Error(s) in re-building vignettes:
--- re-building 'glrnb.Rnw' using Sweave
Loading required package: sp
Loading required package: xtable
This is surveillance 1.19.1. For overview type 'help(surveillance)'.
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting glm.nb model with alpha=0.22596692307607
glrnb: Fitting glm.nb model with alpha=0.22596692307607
glrnb: Fitting glm.nb model with alpha=0.22596692307607
glrnb: Fitting glm.nb model with alpha=0.22596692307607
glrnb: Fitting glm.nb model with alpha=0.22596692307607
glrnb: Fitting glm.nb model with alpha=0.22596692307607
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
--- finished re-building 'glrnb.Rnw'

--- re-building 'hhh4.Rnw' using Sweave
Doing computations: FALSE
--- finished re-building 'hhh4.Rnw'

--- re-building 'monitoringCounts.Rnw' using Sweave
Loading required package: splines
Loading required package: gamlss.data

Attaching package: 'gamlss.data'

The following object is masked from 'package:datasets':

    sleep

Loading required package: gamlss.dist
Loading required package: MASS
Loading required package: nlme
Loading required package: parallel
 **********   GAMLSS Version 5.3-4  ********** 
For more on GAMLSS look at https://www.gamlss.com/
Type gamlssNews() to see new features/changes/bug fixes.

Warning in model.matrix.default(mt, mf, contrasts) :
  non-list contrasts argument ignored
Warning in model.matrix.default(mt, mf, contrasts) :
  non-list contrasts argument ignored
--- finished re-building 'monitoringCounts.Rnw'

--- re-building 'surveillance.Rnw' using Sweave
Doing computations: FALSE
--- finished re-building 'surveillance.Rnw'

--- re-building 'hhh4_spacetime.Rnw' using knitr
Doing computations: FALSE
Loading required namespace: spdep
Note: range of maximum neighbour order by region is 3-5
Loading required package: ggplot2
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "hhh4_spacetime.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'hhh4_spacetime.Rnw' failed with diagnostics:
running 'texi2dvi' on 'hhh4_spacetime.tex' failed

LaTeX errors:
ance/vignettes/hhh4_spacetime.tex:247: LaTeX Error: Command \ttfamily invalid i
n math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:249: LaTeX Error: Command \ttfamily invalid i
n math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:251: LaTeX Error: Command \ttfamily invalid i
n math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:251: LaTeX Error: Command \ttfamily invalid i
n math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:252: LaTeX Error: Command \bfseries invalid i
n math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:259: LaTeX Error: Command \ttfamily invalid i
n math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:259: LaTeX Error: Command \ttfamily invalid i
n math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:260: LaTeX Error: Command \ttfamily invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:262: LaTeX Error: Command \ttfamily invalid i
n math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:263: LaTeX Error: Command \ttfamily invalid i
n math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:263: LaTeX Error: Command \bfseries invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:278: LaTeX Error: Command \ttfamily invalid i
n math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:279: LaTeX Error: Command \bfseries invalid i
n math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:556: LaTeX Error: Command \ttfamily invalid i
n math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:557: LaTeX Error: Command \ttfamily invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:558: LaTeX Error: Command \ttfamily invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:560: LaTeX Error: Command \ttfamily invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:614: LaTeX Error: Command \bfseries invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:614: LaTeX Error: Command \bfseries invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:617: Package amsmath Error: \hat allowed only
 in math mode.

See the amsmath package documentation for explanation.
Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:632: LaTeX Error: Command \ttfamily invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:634: LaTeX Error: Command \ttfamily invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:858: LaTeX Error: Command \ttfamily invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:858: LaTeX Error: Command \ttfamily invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:859: LaTeX Error: Command \ttfamily invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:859: LaTeX Error: Command \ttfamily invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:863: LaTeX Error: Command \bfseries invalid i
n math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:1032: LaTeX Error: Command \ttfamily invalid 
in math mode.

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Type  H <return>  for immediate help.
ance/vignettes/hhh4_spacetime.tex:1032: LaTeX Error: Command \ttfamily invalid 
in math mode.

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Type  H <return>  for immediate help.

--- failed re-building 'hhh4_spacetime.Rnw'

--- re-building 'twinSIR.Rnw' using knitr
Doing computations: FALSE
Warning in `[.epidata`(x, 1:5, , drop = FALSE) :
  dropped class "epidata": subsetting blocks not allowed
Initialized 1 log-baseline interval:  0.00 92.55
Initial parameter vector:  1 1 1 1 0
Computing OSAIC weights for 4 epidemic covariates based on 1000 simulations ...
Initialized 1 log-baseline interval:  0.00 92.55
Initial parameter vector:  1 1 1 1 1 1 0
Computing OSAIC weights for 4 epidemic covariates based on 1000 simulations ...
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "twinSIR.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
--- finished re-building 'twinSIR.Rnw'

--- re-building 'twinstim.Rnw' using knitr
Doing computations: FALSE
Note: auto-generated neighbourhood matrix contains 1 island
no epidemic component in model
Setting up the model environment ...
'imdfit_powerlaw' was fit with disabled 'cumCIF' -> calculate it now ...
Note: added the 'tau' component to object 'imdfit_powerlaw' for future use.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "twinstim.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'twinstim.Rnw' failed with diagnostics:
running 'texi2dvi' on 'twinstim.tex' failed

LaTeX errors:
ance/vignettes/twinstim.tex:636: LaTeX Error: Command \bfseries invalid in math
 mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/twinstim.tex:894: LaTeX Error: Command \ttfamily invalid in math
 mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/twinstim.tex:896: Package amsmath Error: \hat allowed only in ma
th mode.

See the amsmath package documentation for explanation.
Type  H <return>  for immediate help.
ance/vignettes/twinstim.tex:896: Package amsmath Error: \hat allowed only in ma
th mode.

See the amsmath package documentation for explanation.
Type  H <return>  for immediate help.
ance/vignettes/twinstim.tex:1040: LaTeX Error: Command \ttfamily invalid in mat
h mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
ance/vignettes/twinstim.tex:1041: LaTeX Error: Command \ttfamily invalid in mat
h mode.

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Type  H <return>  for immediate help.
ance/vignettes/twinstim.tex:1042: LaTeX Error: Command \ttfamily invalid in mat
h mode.

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Type  H <return>  for immediate help.
ance/vignettes/twinstim.tex:1043: LaTeX Error: Command \ttfamily invalid in mat
h mode.

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Type  H <return>  for immediate help.

--- failed re-building 'twinstim.Rnw'

SUMMARY: processing the following files failed:
  'hhh4_spacetime.Rnw' 'twinstim.Rnw'

Error: Vignette re-building failed.
Execution halted