Error(s) in re-building vignettes:
  ...
--- re-building ‘PlottingGuide.Rnw’ using knitr_notangle
Warning in final.x[i] <- rect.x[selected.arcs] :
  number of items to replace is not a multiple of replacement length
Warning in final.y[i] <- rect.y[selected.arcs] :
  number of items to replace is not a multiple of replacement length
Warning in final.x[i] <- rect.x[selected.arcs] :
  number of items to replace is not a multiple of replacement length
Warning in final.y[i] <- rect.y[selected.arcs] :
  number of items to replace is not a multiple of replacement length
Warning in final.x[i] <- rect.x[selected.arcs] :
  number of items to replace is not a multiple of replacement length
Warning in final.y[i] <- rect.y[selected.arcs] :
  number of items to replace is not a multiple of replacement length
Warning in final.x[i] <- rect.x[selected.arcs] :
  number of items to replace is not a multiple of replacement length
Warning in final.y[i] <- rect.y[selected.arcs] :
  number of items to replace is not a multiple of replacement length
Warning in cor.test.default(x = x, y = y, alternative = alternative, method = method,  :
  Cannot compute exact p-value with ties
Warning in final.x[i] <- rect.x[selected.arcs] :
  number of items to replace is not a multiple of replacement length
Warning in final.y[i] <- rect.y[selected.arcs] :
  number of items to replace is not a multiple of replacement length
Warning in final.x[i] <- rect.x[selected.arcs] :
  number of items to replace is not a multiple of replacement length
Warning in final.y[i] <- rect.y[selected.arcs] :
  number of items to replace is not a multiple of replacement length
Warning in cor.test.default(x = x, y = y, alternative = alternative, method = method,  :
  Cannot compute exact p-value with ties
Warning in FUN(X[[i]], ...) : 'x' is NULL so the result will be NULL
Warning in check.greyscale(palette) :
  Colour scheme may not be greyscale compatible.
Warning in check.greyscale(palette) :
  Colour scheme may not be greyscale compatible.
Error: processing vignette ‘PlottingGuide.Rnw’ failed with diagnostics:
Running ‘texi2dvi’ on ‘PlottingGuide.tex’ failed.
LaTeX errors:
! You can't use `macro parameter character #' in horizontal mode.
l.352 library(BoutrosLab.plotting.general);#
                                            # Loading required package: lattice

? 
! Emergency stop.
l.352 library(BoutrosLab.plotting.general);#
                                            # Loading required package: lattice
End of file on the terminal!

!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘PlottingGuide.Rnw’

SUMMARY: processing the following file failed:
  ‘PlottingGuide.Rnw’

Error: Vignette re-building failed.
In addition: There were 11 warnings (use warnings() to see them)
Execution halted