Error(s) in re-building vignettes:
--- re-building ‘MeBrPlot.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
--- finished re-building ‘MeBrPlot.Rmd’

--- re-building ‘countDists.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
--- finished re-building ‘countDists.Rmd’

--- re-building ‘timeMortality.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Warning in checkMatrixPackageVersion() :
  Package version inconsistency detected.
TMB was built with Matrix version 1.3.2
Current Matrix version is 1.3.4
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0),  :
  'giveCsparse' has been deprecated; setting 'repr = "T"' for you
Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0),  :
  'giveCsparse' has been deprecated; setting 'repr = "T"' for you
Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0),  :
  'giveCsparse' has been deprecated; setting 'repr = "T"' for you
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0),  :
  'giveCsparse' has been deprecated; setting 'repr = "T"' for you
Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0),  :
  'giveCsparse' has been deprecated; setting 'repr = "T"' for you
Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0),  :
  'giveCsparse' has been deprecated; setting 'repr = "T"' for you
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in (function (start, objective, gradient = NULL, hessian = NULL,  :
  NA/NaN function evaluation
Warning in fitTMB(TMBStruc) :
  Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0),  :
  'giveCsparse' has been deprecated; setting 'repr = "T"' for you
Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0),  :
  'giveCsparse' has been deprecated; setting 'repr = "T"' for you
Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0),  :
  'giveCsparse' has been deprecated; setting 'repr = "T"' for you
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0),  :
  'giveCsparse' has been deprecated; setting 'repr = "T"' for you
Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0),  :
  'giveCsparse' has been deprecated; setting 'repr = "T"' for you
Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0),  :
  'giveCsparse' has been deprecated; setting 'repr = "T"' for you
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Warning in fitTMB(TMBStruc) :
  Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : 
  "FreeADFunObject" not available for .Call() for package "glmmTMB"
Calls: <Anonymous>
Quitting from lines 334-384 (timeMortality.Rmd) 
Error: processing vignette 'timeMortality.Rmd' failed with diagnostics:
cannot pop the top-level viewport ('grid' and 'graphics' output mixed?)
--- failed re-building ‘timeMortality.Rmd’

SUMMARY: processing the following file failed:
  ‘timeMortality.Rmd’

Error: Vignette re-building failed.
Execution halted