Running examples in ‘BioMedR-Ex.R’ failed
The error most likely occurred in:

> ### Name: Constitutional
> ### Title: Calculates the Number of Amino Acids Descriptor
> ### Aliases: Constitutional extrDrugAminoAcidCount
> ###   extrDrugAromaticAtomsCount extrDrugAromaticBondsCount
> ###   extrDrugAtomCount extrDrugBondCount extrDrugLargestChain
> ###   extrDrugLargestPiSystem extrDrugLongestAliphaticChain
> ###   extrDrugRotatableBondsCount
> ### Keywords: Acid Aliphatic Amino Aromatic Atom Atoms Bond Bonds Chain
> ###   Count Largest Longest Pi Rotatable extrDrugAminoAcidCount
> ###   extrDrugAromaticAtomsCount extrDrugAromaticBondsCount
> ###   extrDrugAtomCount extrDrugBondCount extrDrugLargestChain
> ###   extrDrugLargestPiSystem extrDrugLongestAliphaticChain
> ###   extrDrugRotatableBondsCount
> 
> ### ** Examples
> 
> # Calculates the Number of Amino Acids Descriptor
> smi = system.file('vignettedata/test.smi', package = 'BioMedR')
> mol = readMolFromSmi(smi, type = 'mol')
> dat = extrDrugAminoAcidCount(mol)
org.openscience.cdk.io.cml.CMLHandler WARN: Detected unknown convention: cdk:substructureList
> head(dat)
                                                        nA nR nN nD nC nF nQ nE
c1ccc2c(c1)oc(=O)c(C(CC(=O)C)c1ccc([N+](=O)[O-])cc1)c2O  0  0  0  0  0  0  0  0
c1(ccc(cc1)O)NC(=O)C                                     0  0  0  0  0  0  0  0
c1ccccc1NC(=O)C                                          0  0  0  0  0  0  0  0
                                                        nG nH nI nP nL nK nM nS
c1ccc2c(c1)oc(=O)c(C(CC(=O)C)c1ccc([N+](=O)[O-])cc1)c2O  0  0  0  0  0  0  0  0
c1(ccc(cc1)O)NC(=O)C                                     0  0  0  0  0  0  0  0
c1ccccc1NC(=O)C                                          0  0  0  0  0  0  0  0
                                                        nT nY nV nW
c1ccc2c(c1)oc(=O)c(C(CC(=O)C)c1ccc([N+](=O)[O-])cc1)c2O  0  0  0  0
c1(ccc(cc1)O)NC(=O)C                                     0  0  0  0
c1ccccc1NC(=O)C                                          0  0  0  0
> 
> # Calculates the Number of Aromatic Atoms Descriptor
> smi = system.file('vignettedata/test.smi', package = 'BioMedR')
> mol = readMolFromSmi(smi, type = 'mol')
> dat = extrDrugAromaticAtomsCount(mol)
> head(dat)
                                                        naAromAtom
c1ccc2c(c1)oc(=O)c(C(CC(=O)C)c1ccc([N+](=O)[O-])cc1)c2O         16
c1(ccc(cc1)O)NC(=O)C                                             6
c1ccccc1NC(=O)C                                                  6
> 
> # Calculates the Number of Aromatic Bonds Descriptor
> smi = system.file('vignettedata/test.smi', package = 'BioMedR')
> mol = readMolFromSmi(smi, type = 'mol')
> dat = extrDrugAromaticBondsCount(mol)
> head(dat)
                                                        nAromBond
c1ccc2c(c1)oc(=O)c(C(CC(=O)C)c1ccc([N+](=O)[O-])cc1)c2O        17
c1(ccc(cc1)O)NC(=O)C                                            6
c1ccccc1NC(=O)C                                                 6
> 
> # Calculates the Number of Atom Descriptor
> smi = system.file('vignettedata/test.smi', package = 'BioMedR')
> mol = readMolFromSmi(smi, type = 'mol')
> dat = extrDrugAtomCount(mol)
> head(dat)
                                                        nAtom
c1ccc2c(c1)oc(=O)c(C(CC(=O)C)c1ccc([N+](=O)[O-])cc1)c2O    41
c1(ccc(cc1)O)NC(=O)C                                       20
c1ccccc1NC(=O)C                                            19
> 
> # Calculates the Descriptor Based on the Number of Bonds of a 
> # Certain Bond Order
> smi = system.file('vignettedata/test.smi', package = 'BioMedR')
> mol = readMolFromSmi(smi, type = 'mol')
> dat = extrDrugBondCount(mol)
> head(dat)
                                                        nB
c1ccc2c(c1)oc(=O)c(C(CC(=O)C)c1ccc([N+](=O)[O-])cc1)c2O 28
c1(ccc(cc1)O)NC(=O)C                                    11
c1ccccc1NC(=O)C                                         10
> 
> # Descriptor that Calculates the Number of Atoms in the Largest Chain
> smi = system.file('vignettedata/test.smi', package = 'BioMedR')
> mol = readMolFromSmi(smi, type = 'mol')
> dat = extrDrugLargestChain(mol)
> head(dat)
                                                        nAtomLC
c1ccc2c(c1)oc(=O)c(C(CC(=O)C)c1ccc([N+](=O)[O-])cc1)c2O      13
c1(ccc(cc1)O)NC(=O)C                                          8
c1ccccc1NC(=O)C                                               7
> 
> # Descriptor that Calculates the Number of Atoms in the Largest Pi Chain
> smi = system.file('vignettedata/test.smi', package = 'BioMedR')
> mol = readMolFromSmi(smi, type = 'mol')
> dat = extrDrugLargestPiSystem(mol)
> head(dat)
                                                        nAtomP
c1ccc2c(c1)oc(=O)c(C(CC(=O)C)c1ccc([N+](=O)[O-])cc1)c2O     12
c1(ccc(cc1)O)NC(=O)C                                        10
c1ccccc1NC(=O)C                                              9
> 
> # Descriptor that Calculates the Number of Atoms in the Longest Aliphatic Chain
> smi = system.file('vignettedata/test.smi', package = 'BioMedR')
> mol = readMolFromSmi(smi, type = 'mol')
> dat = extrDrugLongestAliphaticChain(mol)
Error: segfault from C stack overflow
Execution halted