Error(s) in re-building vignettes:
--- re-building 'clinDataReview-dataPreprocessing.Rmd' using rmarkdown
Data annotated with variable(s): ETHNIC ('ETHNIC'), ARM ('ARM') from the 'custom' dataset based on the variable(s):	USUBJID ('USUBJID').
354 records with ARM ('ARM') %in% 'Placebo' are filtered in data.
--- finished re-building 'clinDataReview-dataPreprocessing.Rmd'

--- re-building 'clinDataReview-dataVisualization.Rmd' using rmarkdown
Loading required package: ggplot2

Attaching package: 'plotly'

The following object is masked from 'package:ggplot2':

    last_plot

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:graphics':

    layout

Warning: General config file: 'config.yml' not available in:C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/clinDataReview/clinDataReview.Rcheck/clinDataReview/skeleton/config.
processing file: patientProfilesTemplate.Rmd

Attaching package: 'patientProfilesVis'

The following object is masked from 'package:clinDataReview':

    filterData

Import AE dataset.
Import CM dataset.
Import DM dataset.
Import EX dataset.
Import LB dataset.
Import MH dataset.
Import SV dataset.
Import VS dataset.
Data is available for the datasets: AE, CM, DM, EX, LB, MH, SV, VS.
0 records with Date/Time of First Study Treatment ('RFXSTDTC') %in% '' are filtered in data.
Subject profiles for Demography created for 7 subject(s).
Creation of patient profiles for batch 1.
Filter subjects of interests.
Get maximum number of lines for each page.
Get limits x-axis.
Extract available subjectsID.
Create empty profile.
Extract plot labels.
Check time transformations.
Check time expand.
Prepare subject profiles to be combined.
Combine profiles across subjects/modules.
Combine profile: 01-701-1148 across modules.
Combine profile: 01-701-1192 across modules.
Combine profile: 01-701-1211 across modules.
Adjust margins.
Include plots in multiple pages if required.
Create subject profile report for subject: 01-701-1148
kpsewhich: major issue: User/administrator updates are out-of-sync.
Convert to list with 1 level.
Extract height for each plot.
Extract labels.
Extract title.
Extract bookmarks (if any).
Get width plot.
Export plots.
Export profiles.
Export profile: 01-701-1148 (part: 1)
Include graphics in the report.
texify: C:\jenkins\workspace\miktex\windows\build\source\Libraries\MiKTeX\Core\Utils\Utils.cpp:490: internal error

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 5
Create subject profile report for subject: 01-701-1192
kpsewhich: major issue: User/administrator updates are out-of-sync.
Convert to list with 1 level.
Extract height for each plot.
Extract labels.
Extract title.
Extract bookmarks (if any).
Get width plot.
Export plots.
Export profiles.
Export profile: 01-701-1192 (part: 1)
Include graphics in the report.
texify: C:\jenkins\workspace\miktex\windows\build\source\Libraries\MiKTeX\Core\Utils\Utils.cpp:490: internal error

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 5
Create subject profile report for subject: 01-701-1211
kpsewhich: major issue: User/administrator updates are out-of-sync.
Convert to list with 1 level.
Extract height for each plot.
Extract labels.
Extract title.
Extract bookmarks (if any).
Get width plot.
Export plots.
Export profiles.
Export profile: 01-701-1211 (part: 1)
Include graphics in the report.
texify: C:\jenkins\workspace\miktex\windows\build\source\Libraries\MiKTeX\Core\Utils\Utils.cpp:490: internal error

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 5
Creation of patient profiles for batch 2.
Filter subjects of interests.
Get maximum number of lines for each page.
Get limits x-axis.
Extract available subjectsID.
Create empty profile.
Extract plot labels.
Check time transformations.
Check time expand.
Prepare subject profiles to be combined.
Combine profiles across subjects/modules.
Combine profile: 01-704-1445 across modules.
Combine profile: 01-710-1083 across modules.
Combine profile: 01-718-1371 across modules.
Adjust margins.
Include plots in multiple pages if required.
Create subject profile report for subject: 01-704-1445
kpsewhich: major issue: User/administrator updates are out-of-sync.
Convert to list with 1 level.
Extract height for each plot.
Extract labels.
Extract title.
Extract bookmarks (if any).
Get width plot.
Export plots.
Export profiles.
Export profile: 01-704-1445 (part: 1)
Include graphics in the report.
texify: C:\jenkins\workspace\miktex\windows\build\source\Libraries\MiKTeX\Core\Utils\Utils.cpp:490: internal error

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 5
Create subject profile report for subject: 01-710-1083
kpsewhich: major issue: User/administrator updates are out-of-sync.
Convert to list with 1 level.
Extract height for each plot.
Extract labels.
Extract title.
Extract bookmarks (if any).
Get width plot.
Export plots.
Export profiles.
Export profile: 01-710-1083 (part: 1)
Include graphics in the report.
texify: C:\jenkins\workspace\miktex\windows\build\source\Libraries\MiKTeX\Core\Utils\Utils.cpp:490: internal error

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 5
Create subject profile report for subject: 01-718-1371
kpsewhich: major issue: User/administrator updates are out-of-sync.
Convert to list with 1 level.
Extract height for each plot.
Extract labels.
Extract title.
Extract bookmarks (if any).
Get width plot.
Export plots.
Export profiles.
Export profile: 01-718-1371 (part: 1)
Include graphics in the report.
texify: C:\jenkins\workspace\miktex\windows\build\source\Libraries\MiKTeX\Core\Utils\Utils.cpp:490: internal error

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 5
Creation of patient profiles for batch 3.
Filter subjects of interests.
Get maximum number of lines for each page.
Get limits x-axis.
Extract available subjectsID.
Create empty profile.
Extract plot labels.
Check time transformations.
Check time expand.
Prepare subject profiles to be combined.
Combine profiles across subjects/modules.
Combine profile: 01-718-1427 across modules.
Adjust margins.
Include plots in multiple pages if required.
Create subject profile report for subject: 01-718-1427
kpsewhich: major issue: User/administrator updates are out-of-sync.
Convert to list with 1 level.
Extract height for each plot.
Extract labels.
Extract title.
Extract bookmarks (if any).
Get width plot.
Export plots.
Export profiles.
Export profile: 01-718-1427 (part: 1)
Include graphics in the report.
texify: C:\jenkins\workspace\miktex\windows\build\source\Libraries\MiKTeX\Core\Utils\Utils.cpp:490: internal error

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 5
0 records with Date/Time of First Study Treatment ('RFXSTDTC') %in% '' are filtered in data.
output file: patientProfilesTemplate.knit.md
[WARNING] This document format requires a nonempty <title> element.
  Defaulting to 'patientProfilesTemplate.knit' as the title.
  To specify a title, use 'title' in metadata or --metadata title="...".

Output created: patientProfilesTemplate.html
Warning: Ignoring unknown aesthetics: text
Warning: Ignoring unknown aesthetics: text
Warning: Ignoring unknown aesthetics: text
Quitting from lines 374-447 (clinDataReview-dataVisualization.Rmd) 
Error: processing vignette 'clinDataReview-dataVisualization.Rmd' failed with diagnostics:
there is no package called 'inTextSummaryTable'
--- failed re-building 'clinDataReview-dataVisualization.Rmd'

--- re-building 'clinDataReview-reporting.Rmd' using rmarkdown
--- finished re-building 'clinDataReview-reporting.Rmd'

SUMMARY: processing the following file failed:
  'clinDataReview-dataVisualization.Rmd'

Error: Vignette re-building failed.
Execution halted