LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metacart/metacart.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetaClean/MetaClean.Rcheck/00install.out' for details.
Package required but not available: 'taxize'

Package suggested but not available for checking: 'traits'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetaComp/MetaComp.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metacom/metacom.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metacor/metacor.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetaCycle/MetaCycle.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metadat/metadat.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Packages required but not available: 'XML', 'SPARQL', 'rlist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaDigitise/metaDigitise.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metadynminer3d/metadynminer3d.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metadynminer/metadynminer.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaEnsembleR/metaEnsembleR.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'e1071' 'gbm' 'ggplot2' 'graphics' 'randomForest'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metafolio/metafolio.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaforest/metaforest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metafor/metafor.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metafuse/metafuse.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metagam/metagam.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metagear/metagear.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaggR/metaggR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetaheuristicFPA/MetaheuristicFPA.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaheuristicOpt/metaheuristicOpt.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetaIntegration/MetaIntegration.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'knitr'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetaIntegrator/MetaIntegrator.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'BiocManager' 'DT' 'GEOmetadb' 'RMySQL' 'RSQLite' 'gplots' 'pheatmap'
  'readr'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'dataone'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rgrass7'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaLik/metaLik.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetaLonDA/MetaLonDA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaMA/metaMA.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
EScombination: no visible global function definition for 'model.matrix'
EScombination: no visible global function definition for 'p.adjust'
EScombination: no visible global function definition for 'pt'
EScombination.paired: no visible global function definition for
  'p.adjust'
EScombination.paired: no visible global function definition for 'pt'
calcfit2Diffrep: no visible global function definition for
  'model.matrix'
directEScombi: no visible global function definition for 'pnorm'
directEScombi: no visible global function definition for 'p.adjust'
directpvalcombi : fstatmeta: no visible global function definition for
  'qnorm'
directpvalcombi: no visible global function definition for 'pnorm'
directpvalcombi: no visible global function definition for 'p.adjust'
pvalcombination: no visible global function definition for
  'model.matrix'
pvalcombination: no visible global function definition for 'p.adjust'
pvalcombination: no visible global function definition for 'pt'
pvalcombination.paired: no visible global function definition for
  'p.adjust'
pvalcombination.paired: no visible global function definition for 'pt'
Undefined global functions or variables:
  model.matrix p.adjust pnorm pt qnorm
Consider adding
  importFrom("stats", "model.matrix", "p.adjust", "pnorm", "pt", "qnorm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metamedian/metamedian.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metamer/metamer.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metamicrobiomeR/metamicrobiomeR.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'lmerTest'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metamisc/metamisc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaMix/metaMix.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metan/metan.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metansue/metansue.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metapack/metapack.Rcheck/00install.out' for details.
Package required but not available: 'GSEABase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaplot/metaplot.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaplotr/metaplotr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaplus/metaplus.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'grImport'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metapost/metapost.Rcheck/00install.out' for details.
Running 'mpost.R'
Running the tests in 'tests/mpost.R' failed.
Complete output:
  > 
  > library(metapost)
  
  Attaching package: 'metapost'
  
  The following object is masked from 'package:stats':
  
      cycle
  
  The following object is masked from 'package:base':
  
      dir
  
  > library(grid)
  > p <- knot(0, 0) + dir(45) + dir(0:9*-10) + knot(unit(6, "cm"), 0)
  > metapost(p, "fig.mp")
  > mpost("fig.mp", tracing=TRUE)
  Error in mpost("fig.mp", tracing = TRUE) : Unable to find 'mpost' program
  Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metapower/metapower.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metap/metap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaprotr/metaprotr.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'ade4' 'dendextend' 'ggforce' 'ggrepel' 'stringr' 'tidyverse'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/meta/meta.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metarep/metarep.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaRMST/metaRMST.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaRNASeq/metaRNASeq.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaSDTreg/metaSDTreg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'semPlot'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaSEM/metaSEM.Rcheck/00install.out' for details.
Package unavailable to check Rd xrefs: 'semPlot'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metasens/metasens.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetaStan/MetaStan.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetaSubtract/MetaSubtract.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaSurvival/metaSurvival.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'survival'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metatest/metatest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metathis/metathis.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Metatron/Metatron.Rcheck/00install.out' for details.
fit.bivar: no visible binding for global variable 'binomial'
summary.fit.bivar: no visible global function definition for 'qt'
summary.fit.bivar: no visible global function definition for 'pt'
Undefined global functions or variables:
  binomial pt qt
Consider adding
  importFrom("stats", "binomial", "pt", "qt")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetaUtility/MetaUtility.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metavcov/metavcov.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metaviz/metaviz.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metawho/metawho.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/meteogRam/meteogRam.Rcheck/00install.out' for details.
crosssection: no visible global function definition for
  'colorRampPalette'
crosssection: no visible global function definition for
  'filled.contour'
crosssection: no visible global function definition for 'axis'
crosssection: no visible global function definition for 'par'
crosssection: no visible global function definition for 'contour'
temperatures: no visible binding for global variable 'time'
Undefined global functions or variables:
  axis colorRampPalette contour filled.contour par time
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("graphics", "axis", "contour", "filled.contour", "par")
  importFrom("stats", "time")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/meteoland/meteoland.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/meteo/meteo.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/meteorits/meteorits.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/meteor/meteor.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/meteR/meteR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MEtest/MEtest.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetFns/MetFns.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetGen/MetGen.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Meth27QC/Meth27QC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MethComp/MethComp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/methcon5/methcon5.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MethodCompare/MethodCompare.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Methplot/Methplot.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
getdata: no visible global function definition for 'read.csv'
plotdata: no visible global function definition for 'head'
Undefined global functions or variables:
  head read.csv
Consider adding
  importFrom("utils", "head", "read.csv")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MethylCapSig/MethylCapSig.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetNorm/MetNorm.Rcheck/00install.out' for details.
RUVRand: no visible global function definition for 'barplot'
RUVRand: no visible global function definition for 'prcomp'
RuvRandIter: no visible global function definition for 'kmeans'
RuvRandIter: no visible global function definition for 'barplot'
RuvRandIter: no visible global function definition for 'prcomp'
opt: no visible global function definition for 'optim'
printdata: no visible global function definition for 'head'
Undefined global functions or variables:
  barplot head kmeans optim prcomp
Consider adding
  importFrom("graphics", "barplot")
  importFrom("stats", "kmeans", "optim", "prcomp")
  importFrom("utils", "head")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metools/metools.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MeTo/MeTo.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetProc/MetProc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/met/met.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metricsgraphics/metricsgraphics.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Metrics/Metrics.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetricsWeighted/MetricsWeighted.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metRology/metRology.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metropolis/metropolis.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metro/metro.Rcheck/00install.out' for details.
Note: found 1 marked UTF-8 string
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metR/metR.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'memoise'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metScanR/metScanR.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'grDevices'
  All declared Imports should be used.
Note: found 5 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MetSizeR/MetSizeR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mets/mets.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/metsyn/metsyn.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mev/mev.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mewAvg/mewAvg.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mexhaz/mexhaz.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mexicolors/mexicolors.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mExplorer/mExplorer.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mfaces/mfaces.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MFAg/MFAg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mfbvar/mfbvar.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mfdb/mfdb.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MFDFA/MFDFA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mfe/mfe.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'ECoL'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mfGARCH/mfGARCH.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MFHD/MFHD.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mFilter/mFilter.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mFLICA/mFLICA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MFPCA/MFPCA.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mfp/mfp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MF/MF.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MFT/MFT.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MfUSampler/MfUSampler.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'MfUSampler.Rnw' using Sweave
MfUSampler 1.0.4
Convenience Functions for Multivariate MCMC Using Univariate Samplers
For citations, please use:
Alireza S. Mahani, Mansour T. A. Sharabiani (2017). Multivariate-From-Univariate MCMC Sampler: The R Package MfUSampler. Journal of Statistical Software, Code Snippets, 78(1), 1-22. doi:10.18637/jss.v078.c01
make cmd is
  make -f "C:/msys64/home/tomas/ucrt3/svn/ucrt3/R_PACK~1/rinst/etc/x64/Makeconf" -f "C:/msys64/home/tomas/ucrt3/svn/ucrt3/R_PACK~1/rinst/share/make/winshlib.mk" CXX='$(CXX11) $(CXX11STD)' CXXFLAGS='$(CXX11FLAGS)' CXXPICFLAGS='$(CXX11PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX11LDFLAGS)' SHLIB_LD='$(SHLIB_CXX11LD)' SHLIB="file32bc39ff7613.dll" WIN=64 TCLBIN= OBJECTS="file32bc39ff7613.o"

make would use
Warning message:
In system(paste(cmd, "-n")) : 'make' not found

Error: processing vignette 'MfUSampler.Rnw' failed with diagnostics:
 chunk 31 
Error in compileCode(f, code, language = language, verbose = verbose) : 
  Warning message:In system(cmd) : 'make' not found

--- failed re-building 'MfUSampler.Rnw'

SUMMARY: processing the following file failed:
  'MfUSampler.Rnw'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mfx/mfx.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mgarchBEKK/mgarchBEKK.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MGBT/MGBT.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mgc/mgc.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'webshot2'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mgcViz/mgcViz.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mgcv/mgcv.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MGDrivE2/MGDrivE2.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MGDrivE/MGDrivE.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mgee2/mgee2.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mglmn/mglmn.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MGLM/MGLM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MGL/MGL.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MGMM/MGMM.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mgm/mgm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'MALDIquantForeign'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mgpd/mgpd.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Packages in Depends field not imported from:
  'corpcor' 'evd' 'fields' 'numDeriv'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MGRASTer/MGRASTer.Rcheck/00install.out' for details.
'library' or 'require' call to 'RJSONIO' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
.onAttach: no visible global function definition for 'packageVersion'
.onAttach: no visible binding for global variable '.MGRAST'
build.MGRAST: no visible binding for global variable '.MGRAST'
build.MGRAST: no visible global function definition for 'fromJSON'
call.MGRAST: no visible binding for global variable '.MGRAST'
call.MGRAST: no visible global function definition for 'download.file'
call.MGRAST: no visible global function definition for 'isValidJSON'
call.MGRAST: no visible global function definition for 'fromJSON'
doc.MGRAST: no visible binding for global variable '.MGRAST'
doc.MGRAST: no visible global function definition for 'str'
load.MGRAST: no visible binding for global variable '.MGRAST'
parse.MGRAST: no visible binding for global variable '.MGRAST'
this.package: no visible binding for global variable '.MGRAST'
Undefined global functions or variables:
  .MGRAST download.file fromJSON isValidJSON packageVersion str
Consider adding
  importFrom("utils", "download.file", "packageVersion", "str")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MGSDA/MGSDA.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mgss/mgss.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mgsub/mgsub.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mGSZ/mGSZ.Rcheck/00install.out' for details.
calc_z_var: no visible binding for global variable 'median'
diffScore: no visible global function definition for 'new'
diffScore: no visible global function definition for 'model.matrix'
logNORMcdf: no visible global function definition for 'pnorm'
mGSZ.adj.mean.std: no visible binding for global variable 'sd'
pick.data.cols: no visible binding for global variable 'var'
plotProfile: no visible binding for global variable 'quantile'
plotProfile: no visible global function definition for 'lines'
plotProfile: no visible global function definition for 'legend'
Undefined global functions or variables:
  legend lines median model.matrix new pnorm quantile sd var
Consider adding
  importFrom("graphics", "legend", "lines")
  importFrom("methods", "new")
  importFrom("stats", "median", "model.matrix", "pnorm", "quantile",
             "sd", "var")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mgwrsar/mgwrsar.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MHadaptive/MHadaptive.Rcheck/00install.out' for details.
File
  LICENSE
is not mentioned in the DESCRIPTION file.
BCI: no visible global function definition for 'quantile'
Metro_Hastings: no visible global function definition for 'optim'
Metro_Hastings: no visible global function definition for 'runif'
Metro_Hastings: no visible global function definition for 'var'
plotMH: no visible global function definition for 'hist'
plotMH: no visible global function definition for 'frame'
plotMH: no visible global function definition for 'text'
Undefined global functions or variables:
  frame hist optim quantile runif text var
Consider adding
  importFrom("graphics", "frame", "hist", "text")
  importFrom("stats", "optim", "quantile", "runif", "var")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mhazard/mhazard.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mhcnuggetsr/mhcnuggetsr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MHCtools/MHCtools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mHG/mHG.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mHMMbayes/mHMMbayes.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MHMM/MHMM.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mhsmm/mhsmm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mhtboot/mhtboot.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MHTcop/MHTcop.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'MCMCpack' 'copula'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MHTdiscrete/MHTdiscrete.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'structSSI'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MHTmult/MHTmult.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MHTrajectoryR/MHTrajectoryR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mhurdle/mhurdle.Rcheck/00install.out' for details.
Package required but not available: 'DAPAR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MIAmaxent/MIAmaxent.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/micar/micar.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miceadds/miceadds.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/micEconAids/micEconAids.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/micEconCES/micEconCES.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/micEconIndex/micEconIndex.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/micEcon/micEcon.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/micEconSNQP/micEconSNQP.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miceFast/miceFast.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/micemd/micemd.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miceMNAR/miceMNAR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miceRanger/miceRanger.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mice/mice.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/michelRodange/michelRodange.Rcheck/00install.out' for details.
Note: found 9345 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miclust/miclust.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/micompr/micompr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miCoPTCM/miCoPTCM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microbats/microbats.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microbenchmark/microbenchmark.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microbial/microbial.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microclass/microclass.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microclustr/microclustr.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'microcontax.data'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microcontax/microcontax.Rcheck/00install.out' for details.
Package unavailable to check Rd xrefs: 'microcontax.data'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MicroDatosEs/MicroDatosEs.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microdemic/microdemic.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'rgexf'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microeco/microeco.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microhaplot/microhaplot.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'DT' 'ggiraph' 'ggplot2' 'grid' 'gtools' 'scales' 'shinyBS'
  'shinyWidgets' 'tidyr'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MicroMacroMultilevel/MicroMacroMultilevel.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/micromap/micromap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/micromapST/micromapST.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MicroNiche/MicroNiche.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/micropan/micropan.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microplot/microplot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microPop/microPop.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microsamplingDesign/microsamplingDesign.Rcheck/00install.out' for details.
Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Hsapiens.UCSC.hg19',
  'BSgenome.Mmusculus.UCSC.mm10'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MicroSEC/MicroSEC.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'GenomicAlignments' 'R.utils' 'data.table' 'magrittr' 'tidyr'
  All declared Imports should be used.
Running examples in 'MicroSEC-Ex.R' failed
The error most likely occurred in:

> ### Name: fun_load_genome
> ### Title: Genome loading function.
> ### Aliases: fun_load_genome
> 
> ### ** Examples
> 
> fun_load_genome("Human")
Error: Install BSgenome.Hsapiens.UCSC.hg38 package.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'my-vignette.Rmd' using rmarkdown
Quitting from lines 118-178 (my-vignette.Rmd) 
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
Install BSgenome.Hsapiens.UCSC.hg38 package.
--- failed re-building 'my-vignette.Rmd'

SUMMARY: processing the following file failed:
  'my-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microseq/microseq.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microservices/microservices.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'config' 'desc' 'dplyr' 'glue' 'withr'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microsimulation/microsimulation.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Microsoft365R/Microsoft365R.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'AzureAuth' 'R6' 'curl' 'jsonlite' 'vctrs'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microSTASIS/microSTASIS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/microsynth/microsynth.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MicSim/MicSim.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MICsplines/MICsplines.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MiDA/MiDA.Rcheck/00install.out' for details.
Running examples in 'MiDA-Ex.R' failed
The error most likely occurred in:

> ### Name: MiStatCount
> ### Title: FDR for microarray gene expression data
> ### Aliases: MiStatCount
> 
> ### ** Examples
> 
> data("IMexpression"); data("IMspecimen") # load data and specimen information
> #sampling data and specimen information
> ExpData<-MiDataSample(IMexpression, IMspecimen$diagnosis,"ebv", "norm")
> Specimens<-MiSpecimenSample(IMspecimen$diagnosis, "ebv", "norm")
> #Counting statistics
> StatRes<-MiStatCount(ExpData, Specimens)
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
  there is no package called 'annotate'
Calls: MiStatCount ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/midasml/midasml.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/midas/midas.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/midasr/midasr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/midastouch/midastouch.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MIDASwrappeR/MIDASwrappeR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MIDN/MIDN.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/midrangeMCP/midrangeMCP.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mifa/mifa.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/migest/migest.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'ggplot2'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/migraph/migraph.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/migrate/migrate.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/migration.indices/migration.indices.Rcheck/00install.out' for details.
migration.cv.in : <anonymous>: no visible global function definition
  for 'sd'
migration.cv.out : <anonymous>: no visible global function definition
  for 'sd'
migration.field.diagram: no visible global function definition for
  'lines'
migration.field.diagram: no visible global function definition for
  'text'
migration.field.diagram: no visible global function definition for
  'polygon'
migration.field.diagram: no visible global function definition for 'lm'
migration.field.diagram: no visible global function definition for
  'predict'
migration.field.diagram: no visible global function definition for
  'points'
migration.field.diagram: no visible global function definition for
  'resid'
migration.field.diagram: no visible global function definition for
  'coef'
migration.field.diagram: no visible global function definition for
  'mtext'
migration.field.diagram: no visible global function definition for
  'density'
migration.field.diagram: no visible global function definition for
  'rug'
migration.gini.col : <anonymous>: no visible global function definition
  for 'dist'
migration.gini.in : <anonymous>: no visible global function definition
  for 'dist'
migration.gini.out : <anonymous>: no visible global function definition
  for 'dist'
migration.gini.row : <anonymous>: no visible global function definition
  for 'dist'
migration.gini.total: no visible global function definition for 'dist'
Undefined global functions or variables:
  coef density dist lines lm mtext points polygon predict resid rug sd
  text
Consider adding
  importFrom("graphics", "lines", "mtext", "points", "polygon", "rug",
             "text")
  importFrom("stats", "coef", "density", "dist", "lm", "predict",
             "resid", "sd")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/migrbc/migrbc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/migui/migui.Rcheck/00install.out' for details.
.default_model: no visible global function definition for 'is'
.guess_type: no visible global function definition for 'is.ts'
.parse_trans: no visible binding for global variable 'qnorm'
do_get_data_from_disk: no visible global function definition for
  'read.csv'
do_get_data_from_mi: no visible global function definition for 'data'
do_get_data_from_r : <anonymous>: no visible global function definition
  for 'is'
do_parametric_eval : <anonymous>: no visible global function definition
  for 'dev.off'
do_parametric_eval : <anonymous>: no visible global function definition
  for 'title'
do_var_options : varHandler2: no visible global function definition for
  'is'
do_var_options : varHandler3: no visible global function definition for
  'getClass'
do_var_options : varHandler3: no visible global function definition for
  'is'
do_var_options : changeHandler: no visible global function definition
  for 'is'
do_var_options : <anonymous>: no visible global function definition for
  'title'
do_var_options: no visible global function definition for 'getClass'
do_var_options: no visible global function definition for 'is'
helpHandler: no visible global function definition for 'browseURL'
is.method_in_mi: no visible global function definition for
  'selectMethod'
is.method_in_mi: no visible global function definition for 'signature'
Undefined global functions or variables:
  browseURL data dev.off getClass is is.ts qnorm read.csv selectMethod
  signature title
Consider adding
  importFrom("grDevices", "dev.off")
  importFrom("graphics", "title")
  importFrom("methods", "getClass", "is", "selectMethod", "signature")
  importFrom("stats", "is.ts", "qnorm")
  importFrom("utils", "browseURL", "data", "read.csv")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MIICD/MIICD.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miic/miic.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MIIPW/MIIPW.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'stats' 'utils'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MIIVsem/MIIVsem.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mikropml/mikropml.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MILC/MILC.Rcheck/00install.out' for details.
nat_hist: no visible global function definition for 'data'
nat_hist: no visible binding for global variable 'current.other'
t_mal: no visible global function definition for 'uniroot'
t_prog: no visible global function definition for 'rlnorm'
tdeath_lung: no visible global function definition for 'data'
tdeath_lung: no visible binding for global variable 'ci.lung'
tdeath_lung: no visible binding for global variable 'current.other'
tdeath_lung: no visible binding for global variable 'former.other'
tdeath_lung: no visible binding for global variable 'never.other'
tdeath_other: no visible global function definition for 'data'
tdeath_other: no visible binding for global variable 'ci.lung'
tdeath_other: no visible binding for global variable 'current.other'
tdeath_other: no visible binding for global variable 'former.other'
tdeath_other: no visible binding for global variable 'never.other'
Undefined global functions or variables:
  ci.lung current.other data former.other never.other rlnorm uniroot
Consider adding
  importFrom("stats", "rlnorm", "uniroot")
  importFrom("utils", "data")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miLineage/miLineage.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/milorGWAS/milorGWAS.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/milr/milr.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mime/mime.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mimi/mimi.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'FactoMineR' 'softImpute'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MImix/MImix.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
MImix.default: no visible binding for global variable 'coef'
MImix.default: no visible binding for global variable 'vcov'
MImix.one: no visible global function definition for 'qnorm'
MImix.one: no visible global function definition for 'uniroot'
mixcdf.target: no visible global function definition for 'pnorm'
print.MImixresult: no visible global function definition for 'coef'
print.MImixresult: no visible global function definition for 'vcov'
summary.MImixresult: no visible global function definition for 'coef'
summary.MImixresult: no visible global function definition for 'vcov'
summary.MImixresult: no visible global function definition for 'qt'
Undefined global functions or variables:
  coef pnorm qnorm qt uniroot vcov
Consider adding
  importFrom("stats", "coef", "pnorm", "qnorm", "qt", "uniroot", "vcov")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MIMSunit/MIMSunit.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mimsy/mimsy.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MinBAR/MinBAR.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'rgdal'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MindOnStats/MindOnStats.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'qdap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mindr/mindr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mineCitrus/mineCitrus.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MinEDfind/MinEDfind.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minerva/minerva.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Miney/Miney.Rcheck/00install.out' for details.
miney : plot.initial.matrix: no visible global function definition for
  'rect'
miney : plot.known.matrix: no visible global function definition for
  'rect'
miney : plot.known.matrix: no visible global function definition for
  'text'
miney: no visible global function definition for 'locator'
miney: no visible global function definition for 'rect'
miney: no visible global function definition for 'title'
Undefined global functions or variables:
  locator rect text title
Consider adding
  importFrom("graphics", "locator", "rect", "text", "title")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miniCRAN/miniCRAN.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minidown/minidown.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'mime'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miniGUI/miniGUI.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minimalRSD/minimalRSD.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'stats'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minimap/minimap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minimaxdesign/minimaxdesign.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minimax/minimax.Rcheck/00install.out' for details.
rminimax: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miniMeta/miniMeta.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'markdown' 'metafor'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minimist/minimist.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Minirand/Minirand.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miniUI/miniUI.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minMSE/minMSE.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minpack.lm/minpack.lm.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minqa/minqa.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minque/minque.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minSNPs/minSNPs.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MINTplates/MINTplates.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MInt/MInt.Rcheck/00install.out' for details.
read_design: no visible global function definition for 'model.frame'
read_design: no visible global function definition for 'read.table'
read_design: no visible global function definition for 'model.matrix'
read_response: no visible global function definition for 'read.table'
update_beta: no visible global function definition for 'update'
update_beta: no visible global function definition for 'glm'
update_beta: no visible global function definition for 'poisson'
Undefined global functions or variables:
  glm model.frame model.matrix poisson read.table update
Consider adding
  importFrom("stats", "glm", "model.frame", "model.matrix", "poisson",
             "update")
  importFrom("utils", "read.table")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minval/minval.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/minxent/minxent.Rcheck/00install.out' for details.
minxent.multiple: no visible global function definition for 'cov.wt'
minxent.single: no visible global function definition for 'optimize'
Undefined global functions or variables:
  cov.wt optimize
Consider adding
  importFrom("stats", "cov.wt", "optimize")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mipfp/mipfp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MIPHENO/MIPHENO.Rcheck/00install.out' for details.
cdf.pval: no visible global function definition for 'median'
cdf.pval: no visible binding for global variable 'ecdf'
find_hits: no visible global function definition for 'na.omit'
mad.scores: no visible global function definition for 'as.formula'
mad.scores: no visible binding for global variable 'median'
mad.scores: no visible binding for global variable 'mad'
rm.outliers: no visible global function definition for 'as.formula'
rm.outliers: no visible binding for global variable 'median'
rm.outliers: no visible binding for global variable 'mad'
Undefined global functions or variables:
  as.formula ecdf mad median na.omit
Consider adding
  importFrom("stats", "as.formula", "ecdf", "mad", "median", "na.omit")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mipplot/mipplot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mipred/mipred.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miraculix/miraculix.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miRada/miRada.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mi/mi.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miRecSurv/miRecSurv.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MIRES/MIRES.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miRetrieve/miRetrieve.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MiRKAT/MiRKAT.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MiRNAQCD/MiRNAQCD.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miRNAss/miRNAss.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MiRSEA/MiRSEA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mirtCAT/mirtCAT.Rcheck/00install.out' for details.
Packages required but not available: 'globaltest', 'GlobalAncova'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mirtjml/mirtjml.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mirt/mirt.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mirtsvd/mirtsvd.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/misaem/misaem.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/misc3d/misc3d.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'BRugs'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miscF/miscF.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miscFuncs/miscFuncs.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miscIC/miscIC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/misclassGLM/misclassGLM.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miscor/miscor.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miscset/miscset.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miscTools/miscTools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/miselect/miselect.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mise/mise.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mispr/mispr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MiSPU/MiSPU.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MisRepARMA/MisRepARMA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/misreport/misreport.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/missCompare/missCompare.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/missDeaths/missDeaths.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/missDiag/missDiag.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/missForest/missForest.Rcheck/00install.out' for details.
missForest: no visible global function definition for 'predict'
missForest: no visible global function definition for 'idiv'
missForest: no visible global function definition for 'var'
nrmse: no visible global function definition for 'var'
Undefined global functions or variables:
  idiv predict var
Consider adding
  importFrom("stats", "predict", "var")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/missingHE/missingHE.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'mcmcr'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/missMDA/missMDA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/missMethods/missMethods.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/missRanger/missRanger.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/missSBM/missSBM.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mistat/mistat.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'grDevices'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mistral/mistral.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MiST/MiST.Rcheck/00install.out' for details.
'library' or 'require' call to 'CompQuadForm' which was already attached by Depends.
  Please remove these calls from your code.
linear.test: no visible global function definition for 'lm'
linear.test: no visible global function definition for 'pchisq'
linear.weight.test: no visible global function definition for 'lm'
linear.weight.test: no visible global function definition for 'dbeta'
linear.weight.test: no visible global function definition for 'pchisq'
logit.test: no visible global function definition for 'glm'
logit.test: no visible global function definition for 'binomial'
logit.test: no visible binding for global variable 'logit'
logit.test: no visible global function definition for 'pchisq'
logit.weight.test: no visible global function definition for 'glm'
logit.weight.test: no visible global function definition for 'binomial'
logit.weight.test: no visible binding for global variable 'logit'
logit.weight.test: no visible global function definition for 'dbeta'
logit.weight.test: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  binomial dbeta glm lm logit pchisq
Consider adding
  importFrom("stats", "binomial", "dbeta", "glm", "lm", "pchisq")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mistr/mistr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/misty/misty.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mitml/mitml.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mitools/mitools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mitre/mitre.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MittagLeffleR/MittagLeffleR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MIWilson/MIWilson.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'rlist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixAK/mixAK.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixAll/MixAll.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixAR/mixAR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixcat/mixcat.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixchar/mixchar.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixComp/mixComp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixcure/mixcure.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixdir/mixdir.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixdist/mixdist.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixedCCA/mixedCCA.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixedClust/mixedClust.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixedIndTests/MixedIndTests.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixedMem/mixedMem.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixedPoisson/MixedPoisson.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixedPsy/MixedPsy.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixedsde/mixedsde.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixedTS/MixedTS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixEMM/mixEMM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixexp/mixexp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MIXFIM/MIXFIM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixfMRI/MixfMRI.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixGHD/MixGHD.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixIndependR/mixIndependR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixKernel/mixKernel.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixlink/mixlink.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixlm/mixlm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixMAP/MixMAP.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixMatrix/MixMatrix.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixmeta/mixmeta.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixOptim/MixOptim.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'rlang'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixPHM/mixPHM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixpoissonreg/mixpoissonreg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixRasch/mixRasch.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixRaschTools/mixRaschTools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mix/mix.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixreg/mixreg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixRF/MixRF.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixR/mixR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixSAL/MixSAL.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixsep/mixsep.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'MASS' 'RODBC' 'tcltk' 'tcltk2'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixSIAR/MixSIAR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixSim/MixSim.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixsmsn/mixsmsn.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixSPE/mixSPE.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixsqp/mixsqp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixtNB/mixtNB.Rcheck/00install.out' for details.
fit.mixtNB: no visible global function definition for 'dnbinom'
fit.mixtNB: no visible global function definition for 'nlminb'
wald.test: no visible global function definition for 'pnorm'
wald.test: no visible global function definition for 'p.adjust'
Undefined global functions or variables:
  dnbinom nlminb p.adjust pnorm
Consider adding
  importFrom("stats", "dnbinom", "nlminb", "p.adjust", "pnorm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixtools/mixtools.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixtox/mixtox.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixtureInf/MixtureInf.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixture/mixture.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixtureRegLTIC/MixtureRegLTIC.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mixtur/mixtur.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'RColorBrewer'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MixTwice/MixTwice.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'ashr' 'fdrtool'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mize/mize.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mizer/mizer.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MKclass/MKclass.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mkde/mkde.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MKdescr/MKdescr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MKinfer/MKinfer.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mkin/mkin.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MKLE/MKLE.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
mkle: no visible global function definition for 'sd'
mkle: no visible global function definition for 'density'
mkle: no visible global function definition for 'optimize'
mkle.ci: no visible global function definition for 'sd'
mkle.ci: no visible binding for global variable 'var'
mkle.ci: no visible global function definition for 'quantile'
mkle.ci: no visible global function definition for 'qnorm'
opt.bw: no visible global function definition for 'sd'
opt.bw : mse: no visible global function definition for 'var'
opt.bw: no visible global function definition for 'optimize'
opt.bw: no visible global function definition for 'var'
Undefined global functions or variables:
  density optimize qnorm quantile sd var
Consider adding
  importFrom("stats", "density", "optimize", "qnorm", "quantile", "sd",
             "var")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MKmisc/MKmisc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mknapsack/mknapsack.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MKomics/MKomics.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MKpower/MKpower.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mkssd/mkssd.Rcheck/00install.out' for details.
mkssd: no visible global function definition for 'txtProgressBar'
mkssd: no visible global function definition for 'setTxtProgressBar'
Undefined global functions or variables:
  setTxtProgressBar txtProgressBar
Consider adding
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ML2Pvae/ML2Pvae.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'reticulate'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlapi/mlapi.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'Matrix' 'R6'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlbench/mlbench.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlbstats/mlbstats.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlbstatsR/mlbstatsR.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'tibble'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLCIRTwithin/MLCIRTwithin.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLCM/MLCM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLDAShiny2/MLDAShiny2.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'DiscriMiner' 'MASS' 'caret' 'datasets' 'dplyr' 'e1071' 'klaR'
  'rhandsontable' 'shiny'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLDAShiny/MLDAShiny.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'DiscriMiner' 'MASS' 'caret' 'datasets' 'dplyr' 'e1071' 'klaR'
  'rhandsontable' 'shiny'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'mldr'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mldr.datasets/mldr.datasets.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLDS/MLDS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mleap/mleap.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlearning/mlearning.Rcheck/00install.out' for details.
Unexported objects imported by ':::' calls:
  'MASS:::lda.default' 'MASS:::qda.default'
  'e1071:::naiveBayes.default' 'e1071:::svm.default'
  'randomForest:::randomForest.default'
  See the note in ?`:::` about the use of this operator.
confusionBarplot: no visible global function definition for 'par'
confusionBarplot: no visible global function definition for 'barplot'
confusionBarplot: no visible global function definition for 'lines'
confusionBarplot: no visible global function definition for 'text'
confusionBarplot: no visible global function definition for 'legend'
confusionBarplot: no visible global function definition for 'axis'
confusionImage: no visible global function definition for 'par'
confusionImage: no visible global function definition for 'image'
confusionImage: no visible global function definition for 'text'
confusionImage: no visible global function definition for 'abline'
confusionImage: no visible global function definition for 'axis'
confusionImage: no visible global function definition for 'mtext'
confusionStars: no visible global function definition for 'par'
confusionStars: no visible global function definition for 'stars'
confusionStars: no visible global function definition for 'rect'
Undefined global functions or variables:
  abline axis barplot image legend lines mtext par rect stars text
Consider adding
  importFrom("graphics", "abline", "axis", "barplot", "image", "legend",
             "lines", "mtext", "par", "rect", "stars", "text")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLEcens/MLEcens.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlegp/mlegp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlergm/mlergm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mle.tools/mle.tools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mleur/mleur.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
dftest: no visible global function definition for 'slot'
mctest: no visible global function definition for 'rnorm'
mleurDiag: no visible global function definition for 'acf'
mleurDiag: no visible global function definition for 'pchisq'
mleurDiag: no visible global function definition for 'par'
mleurDiag: no visible global function definition for 'boxplot'
mleurDiag: no visible global function definition for 'shapiroTest'
mleurDiag: no visible global function definition for 'title'
mleurDiag: no visible global function definition for 'abline'
mleurDiag: no visible global function definition for 'lines'
simar1: no visible global function definition for 'rnorm'
simar1: no visible global function definition for 'rt'
simar1: no visible global function definition for 'convolve'
Undefined global functions or variables:
  abline acf boxplot convolve lines par pchisq rnorm rt shapiroTest
  slot title
Consider adding
  importFrom("graphics", "abline", "boxplot", "lines", "par", "title")
  importFrom("methods", "slot")
  importFrom("stats", "acf", "convolve", "pchisq", "rnorm", "rt")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLeval/MLeval.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'XML'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlfit/mlfit.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlflow/mlflow.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'xml2'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlf/mlf.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLGdata/MLGdata.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLGL/MLGL.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlgt/mlgt.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'methods' 'seqinr'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlica2/mlica2.Rcheck/00install.out' for details.
CheckStability: no visible global function definition for 'cor'
CheckStability: no visible global function definition for 'var'
PriorNormPCA: no visible global function definition for 'barplot'
SortModes: no visible global function definition for 'rnorm'
mlicaMAIN: no visible global function definition for 'runif'
Undefined global functions or variables:
  barplot cor rnorm runif var
Consider adding
  importFrom("graphics", "barplot")
  importFrom("stats", "cor", "rnorm", "runif", "var")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLID/MLID.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'nlme'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlma/mlma.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlmc/mlmc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLmetrics/MLmetrics.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'utils'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlmi/mlmi.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Packages suggested but not available for checking:
  'minfi', 'IlluminaHumanMethylation450kmanifest'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLML2R/MLML2R.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlmm.gwas/mlmm.gwas.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlmmm/mlmmm.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLModelSelection/MLModelSelection.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLMOI/MLMOI.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlmRev/mlmRev.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ML.MSBD/ML.MSBD.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlogitBMA/mlogitBMA.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlogit/mlogit.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlpack/mlpack.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLPA/MLPA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLpreemption/MLpreemption.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLPUGS/MLPUGS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlquantify/mlquantify.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'caret' 'randomForest'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3benchmark/mlr3benchmark.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3cluster/mlr3cluster.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3data/mlr3data.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3db/mlr3db.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3filters/mlr3filters.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3fselect/mlr3fselect.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3hyperband/mlr3hyperband.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3learners/mlr3learners.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3measures/mlr3measures.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3misc/mlr3misc.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3oml/mlr3oml.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3pipelines/mlr3pipelines.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3proba/mlr3proba.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3/mlr3.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3shiny/mlr3shiny.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'DT' 'data.table' 'e1071' 'mlr3' 'mlr3learners' 'mlr3measures' 'plyr'
  'purrr' 'ranger' 'readxl' 'shinyWidgets' 'shinyalert'
  'shinydashboard' 'shinyjs' 'shinythemes' 'stats' 'stringr'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3spatiotempcv/mlr3spatiotempcv.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3tuning/mlr3tuning.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'digest'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3tuningspaces/mlr3tuningspaces.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3verse/mlr3verse.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlr3viz/mlr3viz.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlrCPO/mlrCPO.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlrintermbo/mlrintermbo.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Running examples in 'mlrintermbo-Ex.R' failed
The error most likely occurred in:

> ### Name: OptimizerInterMBO
> ### Title: Tuner and Optimizer using mlrMBO
> ### Aliases: OptimizerInterMBO mlr_optimizers_intermbo mlr_tuners_intermbo
> ###   TunerInterMBO
> 
> ### ** Examples
> 
> library("paradox")
> library("bbotk")
> 
> # silly example function: minimize x^2 for -1 < x < 1
> domain <- ParamSet$new(list(ParamDbl$new("x", lower = -1, upper = 1)))
> codomain <- ParamSet$new(list(ParamDbl$new("y", tags = "minimize")))
> objective <- ObjectiveRFun$new(function(xs) list(y = xs$x^2), domain, codomain)
> 
> # initialize instance
> instance <- OptimInstanceSingleCrit$new(objective, domain, trm("evals", n_evals = 6))
> 
> # use intermbo optimizer
> optser <- opt("intermbo")
> 
> # optimizer has hyperparameters from mlrMBO
> optser$param_set$values$final.method <- "best.predicted"
> 
> # optimization happens here.
> optser$optimize(instance)
INFO  [21:06:44.569] [bbotk] Starting to optimize 1 parameter(s) with '<OptimizerInterMBO>' and '<TerminatorEvals> [n_evals=6, k=0]' 
INFO  [21:06:48.318] [bbotk] Evaluating 4 configuration(s) 
INFO  [21:06:48.349] [bbotk] Result of batch 1: 
INFO  [21:06:48.356] [bbotk]           x          y 
INFO  [21:06:48.356] [bbotk]   0.7410401 0.54914037 
INFO  [21:06:48.356] [bbotk]  -0.2002171 0.04008688 
INFO  [21:06:48.356] [bbotk]   0.2467707 0.06089576 
INFO  [21:06:48.356] [bbotk]  -0.9068912 0.82245165 
Error in encall(self$r.session, vals, n.objectives, still.needs.proposition,  : 
  callr subprocess failed: there is no package called 'XML'
Calls: <Anonymous> ... <Anonymous> -> .__OptimizerInterMBO__.optimize -> encall
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlrMBO/mlrMBO.Rcheck/00install.out' for details.
Package required but not available: 'XML'

Packages suggested but not available for checking: 'mldr', 'rrlda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLRShiny2/MLRShiny2.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'QuantPsyc' 'corrgram' 'dplyr' 'forecast' 'psych' 'shinyAce'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLRShiny/MLRShiny.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'QuantPsyc' 'corrgram' 'dplyr' 'forecast' 'psych' 'shinyAce'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlsbm/mlsbm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlsjunkgen/mlsjunkgen.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlt.docreg/mlt.docreg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mltest/mltest.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mltools/mltools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlt/mlt.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlVAR/mlVAR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLVSBM/MLVSBM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'XML'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mlxR/mlxR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MLZ/MLZ.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MM2Sdata/MM2Sdata.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'MM2Sdata.Rnw' using knitr
texify: C:\jenkins\workspace\miktex\windows\build\source\Libraries\MiKTeX\Core\Utils\Utils.cpp:490: internal error

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 5
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "MM2Sdata.tex" ' had status 1
Error: processing vignette 'MM2Sdata.Rnw' failed with diagnostics:
running 'texi2dvi' on 'MM2Sdata.tex' failed

LaTeX errors:
.Rcheck/vign_test/MM2Sdata/vignettes/MM2Sdata.tex:153: pdfTeX error (font expan
sion): auto expansion is only possible with scalable fonts.
<argument> ...shipout:D \box_use:N \l_shipout_box 
                                                  \__shipout_drop_firstpage_...
l.153 ... 'citation("{}pkgname"{})'.}}\end{kframe}
.Rcheck/vign_test/MM2Sdata/vignettes/MM2Sdata.tex:153:  ==> Fatal error occurre
d, no output PDF file produced!

--- failed re-building 'MM2Sdata.Rnw'

SUMMARY: processing the following file failed:
  'MM2Sdata.Rnw'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MM2S/MM2S.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MM4LMM/MM4LMM.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmabig/mmabig.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MMAC/MMAC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmand/mmand.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmapcharr/mmapcharr.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmap/mmap.Rcheck/00install.out' for details.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mma/mma.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'plotrix'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmb/mmb.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'datasets' 'doParallel' 'parallel'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmcm/mmcm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmc/mmc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MMDai/MMDai.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MMDCopula/MMDCopula.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MMD/MMD.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MMDvariance/MMDvariance.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmeln/mmeln.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MMeM/MMeM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mme/mme.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmeta/mmeta.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MMLR/MMLR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmm2/mmm2.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
mmm2: no visible global function definition for 'model.frame'
mmm2: no visible global function definition for 'model.matrix'
mmm2: no visible global function definition for 'model.response'
mmm2: no visible global function definition for 'as.formula'
Undefined global functions or variables:
  as.formula model.frame model.matrix model.response
Consider adding
  importFrom("stats", "as.formula", "model.frame", "model.matrix",
             "model.response")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmmgee/mmmgee.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmod/mmod.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mMPA/mMPA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmpca/mmpca.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmpf/mmpf.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmpp/mmpp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MMRcaseselection/MMRcaseselection.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MM/MM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmr/mmr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmsample/mmsample.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mmtsne/mmtsne.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MMVBVS/MMVBVS.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MMWRweek/MMWRweek.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MNARclust/MNARclust.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MNB/MNB.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mnis/mnis.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mniw/mniw.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mnj/mnj.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mnlfa/mnlfa.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mnlogit/mnlogit.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MNLpred/MNLpred.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MNLR/MNLR.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'caret' 'datasets' 'e1071' 'nnet' 'shiny' 'stats'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'Flury'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MNM/MNM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mnonr/mnonr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mnormt/mnormt.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MNP/MNP.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mnreadR/mnreadR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MNS/MNS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mnt/mnt.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mobilityIndexR/mobilityIndexR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mobirep/mobirep.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mob/mob.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mobr/mobr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mobsim/mobsim.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MOCCA/MOCCA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mockery/mockery.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mockr/mockr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mockthat/mockthat.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moc/moc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mod09nrt/mod09nrt.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Modalclust/Modalclust.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'highcharter'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modcmfitr/modcmfitr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modeest/modeest.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modehunt/modehunt.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/model4you/model4you.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelbased/modelbased.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'graphics'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Modelcharts/Modelcharts.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelc/modelc.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modeldata/modeldata.Rcheck/00install.out' for details.
Note: found 313 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modeldb/modeldb.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelDown/modelDown.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'DALEX' 'DT' 'auditor' 'breakDown' 'drifter' 'svglite'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Modeler/Modeler.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelfree/modelfree.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'SparseM' which was already attached by Depends.
  Please remove these calls from your code.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ModelGood/ModelGood.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelgrid/modelgrid.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'ggplot2' 'lattice'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelimpact/modelimpact.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'utils'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modeLLtest/modeLLtest.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ModelMap/ModelMap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ModelMatrixModel/ModelMatrixModel.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ModelMetrics/ModelMetrics.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelObj/modelObj.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelplotr/modelplotr.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'modelplotr.Rmd' using rmarkdown
Quitting from lines 198-216 (modelplotr.Rmd) 
Error: processing vignette 'modelplotr.Rmd' failed with diagnostics:
there is no package called 'XML'
--- failed re-building 'modelplotr.Rmd'

SUMMARY: processing the following file failed:
  'modelplotr.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelROC/modelROC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelr/modelr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelStudio/modelStudio.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelsummary/modelsummary.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modeltests/modeltests.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modeltime.ensemble/modeltime.ensemble.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'parsnip'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modeltime.gluonts/modeltime.gluonts.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modeltime.h2o/modeltime.h2o.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modeltime/modeltime.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modeltime.resample/modeltime.resample.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'crayon' 'dials' 'glue' 'parsnip'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modeltools/modeltools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modelwordcloud/modelwordcloud.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moderndive/moderndive.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modernVA/modernVA.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modesto/modesto.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modest/modest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modEvA/modEvA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modgetxl/modgetxl.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modifiedmk/modifiedmk.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modi/modi.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modiscloud/modiscloud.Rcheck/00install.out' for details.
'library' or 'require' calls to packages already attached by Depends:
  'date' 'raster' 'rgdal' 'sfsmisc'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'date' 'raster' 'rgdal' 'sfsmisc' 'sp'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MODISSnow/MODISSnow.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MODISTools/MODISTools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MODIStsp/MODIStsp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modmarg/modmarg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modMax/modMax.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modopt.matlab/modopt.matlab.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modQR/modQR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mod/mod.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ModStatR/ModStatR.Rcheck/00install.out' for details.
Note: found 20578 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ModTools/ModTools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modTurPoint/modTurPoint.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moduleColor/moduleColor.Rcheck/00install.out' for details.
.clustOrder: no visible global function definition for 'hclust'
.clustOrder: no visible global function definition for 'as.dist'
consensusMEDissimilarity: no visible global function definition for
  'cor'
mergeCloseModules: no visible global function definition for 'cor'
mergeCloseModules: no visible global function definition for 'hclust'
mergeCloseModules: no visible global function definition for 'as.dist'
moduleEigengenes: no visible global function definition for 'cor'
moduleEigengenes: no visible global function definition for 'cov'
moduleNumber: no visible global function definition for 'cutree'
orderMEs: no visible global function definition for 'cor'
orderMEs: no visible global function definition for 'as.dist'
plotHclustColors: no visible global function definition for 'barplot'
plotHclustColors: no visible global function definition for 'strwidth'
plotHclustColors: no visible global function definition for 'rect'
plotHclustColors: no visible global function definition for 'text'
plotHclustColors: no visible global function definition for 'lines'
Undefined global functions or variables:
  as.dist barplot cor cov cutree hclust lines rect strwidth text
Consider adding
  importFrom("graphics", "barplot", "lines", "rect", "strwidth", "text")
  importFrom("stats", "as.dist", "cor", "cov", "cutree", "hclust")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modules/modules.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/modygliani/modygliani.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MOEADr/MOEADr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MoEClust/MoEClust.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moexer/moexer.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moezipfR/moezipfR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mogavs/mogavs.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mojson/mojson.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mokken/mokken.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moko/moko.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/molaR/molaR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MoLE/MoLE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MolgenisArmadillo/MolgenisArmadillo.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MolgenisAuth/MolgenisAuth.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MOLHD/MOLHD.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/molic/molic.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/molnet/molnet.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mombf/mombf.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/momentchi2/momentchi2.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/momentfit/momentfit.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moments/moments.Rcheck/00install.out' for details.
agostino.test: no visible global function definition for
  'complete.cases'
agostino.test: no visible global function definition for 'pnorm'
anscombe.test: no visible global function definition for
  'complete.cases'
anscombe.test: no visible global function definition for 'pnorm'
bonett.test: no visible global function definition for 'complete.cases'
bonett.test: no visible global function definition for 'pnorm'
jarque.test: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  complete.cases pchisq pnorm
Consider adding
  importFrom("stats", "complete.cases", "pchisq", "pnorm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/momentuHMM/momentuHMM.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Momocs/Momocs.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MoMPCA/MoMPCA.Rcheck/00install.out' for details.
Note: found 16 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/momr/momr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MomTrunc/MomTrunc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/monaco/monaco.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mondate/mondate.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Mondrian/Mondrian.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MonetDB.R/MonetDB.R.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mongolite/mongolite.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mongopipe/mongopipe.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/monitoR/monitoR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/monmlp/monmlp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/monobin/monobin.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/monobinShiny/monobinShiny.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/monoClust/monoClust.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/monographaR/monographaR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MonoInc/MonoInc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/monomvn/monomvn.Rcheck/00install.out' for details.
Package required but not available: 'taxize'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MonoPoly/MonoPoly.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/monoreg/monoreg.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/monotone/monotone.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/monotonicity/monotonicity.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/monreg/monreg.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MonteCarlo/MonteCarlo.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MonteCarloSEM/MonteCarloSEM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Monte.Carlo.se/Monte.Carlo.se.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moodleR/moodleR.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'here'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moonBook/moonBook.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'ztable'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mopac/mopac.Rcheck/00install.out' for details.
Note: found 13 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mopsocd/mopsocd.Rcheck/00install.out' for details.
mopsocd : initialize_pop: no visible global function definition for
  'runif'
mopsocd : compute_velocity: no visible global function definition for
  'runif'
mopsocd : mutate: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MOQA/MOQA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MOrder/MOrder.Rcheck/00install.out' for details.
checkTH: no visible global function definition for 'pchisq'
getOrderPval: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  pchisq
Consider adding
  importFrom("stats", "pchisq")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moreparty/moreparty.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/morgenstemning/morgenstemning.Rcheck/00install.out' for details.
ametrine : <anonymous>: no visible global function definition for
  'approx'
ametrine: no visible global function definition for 'rgb'
isolum : <anonymous>: no visible global function definition for
  'approx'
isolum: no visible global function definition for 'rgb'
morgenstemning : <anonymous>: no visible global function definition for
  'approx'
morgenstemning: no visible global function definition for 'rgb'
Undefined global functions or variables:
  approx rgb
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("stats", "approx")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/morphemepiece.data/morphemepiece.data.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/morphemepiece/morphemepiece.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/morpheus/morpheus.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/morphomap/morphomap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Morpho/Morpho.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MorseGen/MorseGen.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
cor.gen: no visible global function definition for 'rnorm'
cor.gen: no visible global function definition for 'resid'
cor.gen: no visible global function definition for 'lm'
cor.gen: no visible binding for global variable 'sd'
cor.gen: no visible global function definition for 'cor'
cor.gen: no visible global function definition for 'write.table'
stat.gen: no visible global function definition for 'rexp'
stat.gen: no visible global function definition for 'rnorm'
stat.gen: no visible binding for global variable 'sd'
stat.gen: no visible global function definition for 'write.table'
Undefined global functions or variables:
  cor lm resid rexp rnorm sd write.table
Consider adding
  importFrom("stats", "cor", "lm", "resid", "rexp", "rnorm", "sd")
  importFrom("utils", "write.table")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/morse/morse.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mortAAR/mortAAR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MortalityGaps/MortalityGaps.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MortalityLaws/MortalityLaws.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MortalityTables/MortalityTables.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MortCast/MortCast.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mortyr/mortyr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mosaicCalc/mosaicCalc.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'ggformula' 'magrittr' 'rlang'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mosaicCore/mosaicCore.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mosaicData/mosaicData.Rcheck/00install.out' for details.
Note: found 7 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mosaic.find/mosaic.find.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mosaicModel/mosaicModel.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'MASS' 'caret' 'ggformula' 'knitr' 'testthat' 'tidyverse'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mosaic/mosaic.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'ggridges' 'ggstance'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'mlrCPO'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mosqcontrol/mosqcontrol.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'NlcOptim'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'annotate'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MOSS/MOSS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MOST/MOST.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mosum/mosum.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MoTBFs/MoTBFs.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MOTE/MOTE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/motifcluster/motifcluster.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/motif/motif.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/motifr/motifr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/motmot/motmot.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/motoRneuron/motoRneuron.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moult/moult.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mountainplot/mountainplot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mousetrack/mousetrack.Rcheck/00install.out' for details.
getmouseDV: no visible global function definition for 'tail'
interpltraj: no visible global function definition for 'approx'
trim1: no visible global function definition for 'tail'
Undefined global functions or variables:
  approx tail
Consider adding
  importFrom("stats", "approx")
  importFrom("utils", "tail")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mousetrap/mousetrap.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/movecost/movecost.Rcheck/00install.out' for details.
Note: found 3 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moveHMM/moveHMM.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/move/move.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moveVis/moveVis.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/moveWindSpeed/moveWindSpeed.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'corpus.useR.2008.abstracts'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/movMF/movMF.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mozzie/mozzie.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPAgenomics/MPAgenomics.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mpa/mpa.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File 'mpa/R/zzz.R':
  .First.lib calls:
    cat("\n mpa: CoWords Method")
    cat("\n ")
    cat("\n Universidad Nacional de Colombia")
    cat("\n ")
    cat("\n Elaborado por: Daniel Rodriguez <dhrodriguezt@unal.edu.co>")
    cat("\n                Campo Elias Pardo <cepardot@unal.edu.co>")
    cat("\n For help: ?mpa   \n\n")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.

diagram.mpa: no visible global function definition for 'abline'
diagram.mpa: no visible global function definition for 'text'
Undefined global functions or variables:
  abline text
Consider adding
  importFrom("graphics", "abline", "text")
to your NAMESPACE file.
Note: found 6 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mpath/mpath.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mpbart/mpbart.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPBoost/MPBoost.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPCI/MPCI.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mpcmp/mpcmp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mpcv/mpcv.Rcheck/00install.out' for details.
mpcv: no visible binding for global variable 'median'
mpcv: no visible global function definition for 'cov'
mpcv: no visible global function definition for 'dist'
plot.mpcv: no visible binding for global variable 'median'
plot.mpcv: no visible global function definition for 'par'
plot.mpcv: no visible global function definition for 'rect'
plot.mpcv: no visible global function definition for 'lines'
plot.mpcv: no visible global function definition for 'points'
plot.mpcv: no visible global function definition for 'legend'
Undefined global functions or variables:
  cov dist legend lines median par points rect
Consider adding
  importFrom("graphics", "legend", "lines", "par", "points", "rect")
  importFrom("stats", "cov", "dist", "median")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPDiR/MPDiR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mpe/mpe.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPGE/MPGE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPINet/MPINet.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
GetExampleData: no visible binding for global variable 'MPINetData'
Getenvir: no visible binding for global variable 'MPINetData'
getPSS: no visible global function definition for 'lines'
performpcls: no visible global function definition for 'binomial'
Undefined global functions or variables:
  MPINetData binomial lines
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "binomial")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPkn/MPkn.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPLikelihoodWB/MPLikelihoodWB.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mplot/mplot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MplusAutomation/MplusAutomation.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MplusTrees/MplusTrees.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mpmcorrelogram/mpmcorrelogram.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mpmi/mpmi.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mpm/mpm.Rcheck/00install.out' for details.
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'KernSmooth' 'MASS'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
export.summary.mpm: warning in complex(real = x$Rows[, FdimsR[1]], imag
  = x$Rows[, FdimsR[2]]): partial argument match of 'imag' to
  'imaginary'
export.summary.mpm: warning in complex(real = x$Columns[, FdimsC[1]],
  imag = x$Columns[, FdimsC[2]]): partial argument match of 'imag' to
  'imaginary'
.onAttach: no visible global function definition for
  'packageDescription'
export.summary.mpm: no visible global function definition for
  'write.table'
mpm: no visible binding for global variable 'median'
plot.mpm: no visible global function definition for 'rainbow'
plot.mpm: no visible global function definition for 'quantile'
plot.mpm: no visible global function definition for 'par'
plot.mpm: no visible global function definition for 'points'
plot.mpm: no visible global function definition for 'smoothScatter'
plot.mpm: no visible global function definition for 'colorRampPalette'
plot.mpm: no visible global function definition for 'symbols'
plot.mpm: no visible global function definition for 'text'
plot.mpm: no visible global function definition for 'lines'
plot.mpm: no visible global function definition for 'box'
Undefined global functions or variables:
  box colorRampPalette lines median packageDescription par points
  quantile rainbow smoothScatter symbols text write.table
Consider adding
  importFrom("grDevices", "colorRampPalette", "rainbow")
  importFrom("graphics", "box", "lines", "par", "points",
             "smoothScatter", "symbols", "text")
  importFrom("stats", "median", "quantile")
  importFrom("utils", "packageDescription", "write.table")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPN/MPN.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mpoly/mpoly.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mppa/mppa.Rcheck/00install.out' for details.
place: no visible global function definition for 'points'
plot,mproc: no visible binding for global variable 'rainbow'
plot,mproc: no visible global function definition for 'plot.default'
plot,mproc: no visible global function definition for 'axis'
plot,mproc: no visible global function definition for 'points'
Undefined global functions or variables:
  axis plot.default points rainbow
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "axis", "plot.default", "points")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mppR/mppR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mp/mp.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPR.genotyping/MPR.genotyping.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPSEM/MPSEM.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mpspline2/mpspline2.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPS/MPS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPsychoR/MPsychoR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPTinR/MPTinR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPTmultiverse/MPTmultiverse.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mptools/mptools.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mpt/mpt.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MPV/MPV.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MQMF/MQMF.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Mqrcm/Mqrcm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mQTL/mQTL.Rcheck/00install.out' for details.
ppersp: no visible global function definition for 'colorRampPalette'
Undefined global functions or variables:
  colorRampPalette
Consider adding
  importFrom("grDevices", "colorRampPalette")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mra/mra.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mratios/mratios.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrbayes/mrbayes.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrbin/mrbin.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrbsizeR/mrbsizeR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRCV/MRCV.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrds/mrds.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mregions/mregions.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mreg/mreg.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
densityfn: no visible global function definition for 'dnbinom'
densityfn: no visible global function definition for 'dpois'
densityfn: no visible global function definition for 'dgeom'
form.add: no visible global function definition for 'formula'
mreg: no visible global function definition for 'model.frame'
mreg: no visible global function definition for 'model.response'
mreg: no visible global function definition for 'model.matrix'
mreg: no visible global function definition for 'model.offset'
mreg: no visible global function definition for 'nlm'
paper: no visible global function definition for 'model.matrix'
randfn: no visible global function definition for 'rnbinom'
randfn: no visible global function definition for 'rpois'
randfn: no visible global function definition for 'rgeom'
randfn: no visible global function definition for 'rbinom'
summary.mreg: no visible global function definition for 'pnorm'
summary.mreg: no visible global function definition for 'printCoefmat'
Undefined global functions or variables:
  dgeom dnbinom dpois formula model.frame model.matrix model.offset
  model.response nlm pnorm printCoefmat rbinom rgeom rnbinom rpois
Consider adding
  importFrom("stats", "dgeom", "dnbinom", "dpois", "formula",
             "model.frame", "model.matrix", "model.offset",
             "model.response", "nlm", "pnorm", "printCoefmat", "rbinom",
             "rgeom", "rnbinom", "rpois")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrf2d/mrf2d.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRFA/MRFA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRFcov/MRFcov.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrfDepth/mrfDepth.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrfse/mrfse.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrgsim.parallel/mrgsim.parallel.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > 
  > Sys.setenv("R_TESTS" = "")
  > 
  > library(testthat)
  > library(mrgsim.parallel)
  Loading required package: mrgsolve
  
  Attaching package: 'mrgsolve'
  
  The following object is masked from 'package:stats':
  
      filter
  
  > test_check("mrgsim.parallel", reporter="summary")
  parallel: 
  basic functionality: 
  ---:: stderr ::---------------------------------------------
  
  ------------------------------------------------------------
  1
  
  ══ Failed ══════════════════════════════════════════════════════════════════════
  ── 1. Error (test-parallel.R:6:1): (code run outside of `test_that()`) ─────────
  Error: the model build step failed.
  Backtrace:
   1. base::suppressMessages(mrgsolve::modlib("pk1", end = 3)) test-parallel.R:6:0
   3. mrgsolve::modlib("pk1", end = 3)
   4. mrgsolve::mread_cache(model, project = modlib(), ...)
   5. mrgsolve::mread(...)
   6. mrgsolve:::build_failed(out, build, x, ignore.stdout)
  
  ══ DONE ════════════════════════════════════════════════════════════════════════
  Error: Test failures
  Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrgsim.sa/mrgsim.sa.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrgsolve/mrgsolve.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRHawkes/MRHawkes.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRH/MRH.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mri/mri.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mritc/mritc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRmediation/MRmediation.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrMLM.GUI/mrMLM.GUI.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrMLM/mrMLM.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mRMRe/mRMRe.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRMR/MRMR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mro/mro.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRPC/MRPC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mRpostman/mRpostman.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRQoL/MRQoL.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mr.raps/mr.raps.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRReg/MRReg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mrregression/mrregression.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MrSGUIDE/MrSGUIDE.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRS/MRS.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRsurv/MRsurv.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
Packages in Depends field not imported from:
  'mvtnorm' 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
MRsurvival: no visible global function definition for 'rmvnorm'
MRsurvival: no visible global function definition for 'optim'
MRsurvival : <anonymous>: no visible global function definition for
  'quantile'
Undefined global functions or variables:
  optim quantile rmvnorm
Consider adding
  importFrom("stats", "optim", "quantile")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRTSampleSizeBinary/MRTSampleSizeBinary.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'dplyr'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MRTSampleSize/MRTSampleSize.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msaeDB/msaeDB.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msaenet/msaenet.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msaeRB/msaeRB.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msae/msae.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msaFACE/msaFACE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msap/msap.Rcheck/00install.out' for details.
msap: no visible global function definition for 'packageVersion'
msap: no visible global function definition for 'read.csv'
msap: no visible global function definition for 'write.csv'
msap: no visible global function definition for 'sd'
msap: no visible global function definition for 'wilcox.test'
msap: no visible global function definition for 'dist'
msap: no visible global function definition for 'rainbow'
msap: no visible global function definition for 'png'
msap: no visible global function definition for 'legend'
msap: no visible global function definition for 'dev.off'
pcoa: no visible global function definition for 'cmdscale'
pcoa: no visible global function definition for 'png'
pcoa: no visible global function definition for 'par'
pcoa: no visible global function definition for 'rainbow'
pcoa: no visible global function definition for 'points'
pcoa: no visible global function definition for 'dev.off'
pcoa: no visible global function definition for 'write.csv'
Undefined global functions or variables:
  cmdscale dev.off dist legend packageVersion par png points rainbow
  read.csv sd wilcox.test write.csv
Consider adding
  importFrom("grDevices", "dev.off", "png", "rainbow")
  importFrom("graphics", "legend", "par", "points")
  importFrom("stats", "cmdscale", "dist", "sd", "wilcox.test")
  importFrom("utils", "packageVersion", "read.csv", "write.csv")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msaR/msaR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSbox/MSbox.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msBP/msBP.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msce/msce.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mschart/mschart.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSCMT/MSCMT.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MScombine/MScombine.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mscp/mscp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSCquartets/MSCquartets.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mscstexta4r/mscstexta4r.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mscstts/mscstts.Rcheck/00install.out' for details.
Note: found 26 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mscsweblm4r/mscsweblm4r.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msda/msda.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MsdeParEst/MsdeParEst.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'MASS' 'moments' 'mvtnorm'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msde/msde.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msd/msd.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSEtool/MSEtool.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSGARCHelm/MSGARCHelm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSGARCH/MSGARCH.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSGLasso/MSGLasso.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msgl/msgl.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msgpackR/msgpackR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msgps/msgps.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSG/MSG.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msgr/msgr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mshap/mshap.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'tidyselect'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msigdbr/msigdbr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msig/msig.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mSimCC/mSimCC.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSiP/MSiP.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'ranger'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msir/msir.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msltrend/msltrend.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msma/msma.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msme/msme.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msm/msm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msmtools/msmtools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSMwRA/MSMwRA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msos/msos.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSPRT/MSPRT.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'datasets' 'grDevices' 'graphics' 'iterators' 'methods'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSQC/MSQC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSRDT/MSRDT.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'utils'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ms.sev/ms.sev.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mssm/mssm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msSPChelpR/msSPChelpR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSSQL/MSSQL.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mssqlR/mssqlR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msSurv/msSurv.Rcheck/00install.out' for details.
BS.var: no visible binding for global variable 'var'
BS.var: no visible global function definition for 'cov'
Dist.CIs: no visible global function definition for 'qnorm'
MSM.CIs: no visible global function definition for 'qnorm'
plot,msSurv-missing: no visible global function definition for 'update'
summary,msSurv: no visible global function definition for 'quantile'
Undefined global functions or variables:
  cov qnorm quantile update var
Consider adding
  importFrom("stats", "cov", "qnorm", "quantile", "update", "var")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mstate/mstate.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mStats/mStats.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'utils'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mstDIF/mstDIF.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mSTEM/mSTEM.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mstherm/mstherm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mstknnclust/mstknnclust.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MST/MST.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mstrio/mstrio.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mstR/mstR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/msu/msu.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MSwM/MSwM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MTA/MTA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MTAR/MTAR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MTDrh/MTDrh.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MTE/MTE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mthapower/mthapower.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MTLR/MTLR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MTPS/MTPS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'measuRing'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mtsdi/mtsdi.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MTS/MTS.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MTSYS/MTSYS.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MUACz/MUACz.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MuChPoint/MuChPoint.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/muckrock/muckrock.Rcheck/00install.out' for details.
Note: found 2632 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mudata2/mudata2.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'ggplot2'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mudens/mudens.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mudfold/mudfold.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mueRelativeRisk/mueRelativeRisk.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MuFiCokriging/MuFiCokriging.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'DiceKriging' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
CrossValidationMuFicokm: no visible global function definition for
  'covMatrix'
CrossValidationMuFicokmAll: no visible global function definition for
  'covMatrix'
MuFicokm: no visible global function definition for 'km'
compute.beta.hat: no visible global function definition for 'lm'
computeAuxVariables: no visible global function definition for
  'covMatrix'
kmCok: no visible global function definition for 'new'
kmCok: no visible global function definition for 'drop.response'
kmCok: no visible global function definition for 'model.matrix'
kmCok: no visible global function definition for 'covStruct.create'
kmCok: no visible global function definition for 'validObject'
kmCok: no visible global function definition for 'covParametersBounds'
kmCok: no visible binding for global variable 'kmEstimate'
kmCok : cv: no visible global function definition for 'leaveOneOut.km'
predict.kmCok: no visible global function definition for 'model.matrix'
predict.kmCok: no visible global function definition for 'covMat1Mat2'
predict.kmCok: no visible global function definition for 'qnorm'
predict.kmCok: no visible global function definition for 'qt'
predict.kmCok: no visible global function definition for 'covMatrix'
summary.MuFicokm: no visible global function definition for
  'covparam2vect'
Undefined global functions or variables:
  covMat1Mat2 covMatrix covParametersBounds covStruct.create
  covparam2vect drop.response km kmEstimate leaveOneOut.km lm
  model.matrix new qnorm qt validObject
Consider adding
  importFrom("methods", "new", "validObject")
  importFrom("stats", "lm", "model.matrix", "qnorm", "qt")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/muhaz/muhaz.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/muHVT/muHVT.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'gtools'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/muir/muir.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MullerPlot/MullerPlot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mully/mully.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'shape'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mulset/mulset.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultAlloc/MultAlloc.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultBiplotR/MultBiplotR.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'polycor'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multbxxc/multbxxc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multcomp/multcomp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multcompView/multcompView.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multDM/multDM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multdyn/multdyn.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultEq/MultEq.Rcheck/00install.out' for details.
multeq.diff: no visible global function definition for 'cov'
multeq.diff: no visible global function definition for 'pt'
multeq.diff: no visible global function definition for 'qt'
multeq.rat: no visible global function definition for 'cov'
multeq.rat: no visible global function definition for 'pt'
multeq.rat: no visible global function definition for 'qt'
Undefined global functions or variables:
  cov pt qt
Consider adding
  importFrom("stats", "cov", "pt", "qt")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multfisher/multfisher.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multgee/multgee.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiApply/multiApply.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiAssetOptions/multiAssetOptions.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiband/multiband.Rcheck/00install.out' for details.
synthetic_multiband: no visible global function definition for 'runif'
synthetic_multiband: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiBD/MultiBD.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multibiplotGUI/multibiplotGUI.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multibridge/multibridge.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiCA/multiCA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multicastR/multicastR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multichull/multichull.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiclassPairs/multiclassPairs.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multicmp/multicmp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiCNVDetect/MultiCNVDetect.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiColl/multiColl.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multicolor/multicolor.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'cowsay'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multicon/multicon.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multicool/multicool.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multicross/multicross.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'Matrix'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiDimBio/multiDimBio.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multidplyr/multidplyr.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'R6'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'multidplyr.Rmd' using rmarkdown
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multifear/multifear.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'ez'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiFit/MultiFit.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multifluo/multifluo.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multifwf/multifwf.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiGHQuad/MultiGHQuad.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multigraph/multigraph.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multigraphr/multigraphr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multigroup/multigroup.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiHorizonSPA/MultiHorizonSPA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiJoin/MultiJoin.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiKink/MultiKink.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'MASS'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multilaterals/multilaterals.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiLCIRT/MultiLCIRT.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multilevelPSA/multilevelPSA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multilevel/multilevel.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multilevelTools/multilevelTools.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multilinguer/multilinguer.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiMarker/multiMarker.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multimark/multimark.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multimode/multimode.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multimorbidity/multimorbidity.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'devtools' 'stats' 'tidyverse'
  All declared Imports should be used.
Note: found 15 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multinbmod/multinbmod.Rcheck/00install.out' for details.
multinb.fit: no visible global function definition for 'nlminb'
multinbmod: no visible global function definition for 'is.empty.model'
multinbmod: no visible global function definition for 'model.matrix'
multinbmod: no visible binding for global variable 'contrasts'
multinbmod: no visible global function definition for 'model.response'
multinbmod: no visible global function definition for 'model.offset'
Undefined global functions or variables:
  contrasts is.empty.model model.matrix model.offset model.response
  nlminb
Consider adding
  importFrom("stats", "contrasts", "is.empty.model", "model.matrix",
             "model.offset", "model.response", "nlminb")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multinet/multinet.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multinets/multinets.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multinma/multinma.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultinomialCI/MultinomialCI.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'rPorta'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multinomineq/multinomineq.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multinomRob/multinomRob.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiOrd/MultiOrd.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multipanelfigure/multipanelfigure.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiPhen/MultiPhen.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiPIM/multiPIM.Rcheck/00install.out' for details.
multiPIM : expand.factors: no visible global function definition for
  'formula'
multiPIM : expand.factors: no visible global function definition for
  'model.matrix'
multiPIM : <anonymous>: no visible global function definition for 'glm'
multiPIM : <anonymous>: no visible binding for global variable
  'binomial'
multiPIM : <anonymous>: no visible global function definition for
  'qlogis'
multiPIM : <anonymous>: no visible global function definition for
  'as.formula'
multiPIM : <anonymous>: no visible global function definition for 'lm'
multiPIM: no visible global function definition for 'glm'
multiPIM: no visible global function definition for 'qlogis'
multiPIM: no visible binding for global variable 'binomial'
multiPIM: no visible global function definition for 'plogis'
multiPIM: no visible global function definition for 'sd'
multiPIM: no visible global function definition for 'lm'
summary.multiPIM: no visible binding for global variable 'sd'
summary.multiPIM: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  as.formula binomial formula glm lm model.matrix plogis pnorm qlogis
  sd
Consider adding
  importFrom("stats", "as.formula", "binomial", "formula", "glm", "lm",
             "model.matrix", "plogis", "pnorm", "qlogis", "sd")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultipleBubbles/MultipleBubbles.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multipleNCC/multipleNCC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiplex/multiplex.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiplierDEA/MultiplierDEA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multipol/multipol.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiRDPG/multiRDPG.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multirich/multirich.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiridge/multiridge.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiRNG/MultiRNG.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiRobust/MultiRobust.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiROC/multiROC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiRR/MultiRR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiselect/multiselect.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multisensi/multisensi.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multisite.accuracy/multisite.accuracy.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultisiteMediation/MultisiteMediation.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiSkew/MultiSkew.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multisom/multisom.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multispatialCCM/multispatialCCM.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultIS/MultIS.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'poweRlaw' 'rmutil'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiSV/MultiSV.Rcheck/00install.out' for details.
PrbMlt.default: no visible binding for global variable 'na.omit'
PrbMlt.default: no visible global function definition for 'anova'
Undefined global functions or variables:
  anova na.omit
Consider adding
  importFrom("stats", "anova", "na.omit")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multitaper/multitaper.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multivariance/multivariance.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultivariateAnalysis/MultivariateAnalysis.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultivariateRandomForest/MultivariateRandomForest.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiVarMI/MultiVarMI.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multivar/multivar.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiVarSel/MultiVarSel.Rcheck/00install.out' for details.
Note: found 6 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multivator/multivator.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiverse/multiverse.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiviewtest/multiviewtest.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiwave/multiwave.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiway/multiway.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultiwayRegression/MultiwayRegression.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multiwayvcov/multiwayvcov.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultNonParam/MultNonParam.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultOrdRS/MultOrdRS.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MultSurvTests/MultSurvTests.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/multxpert/multxpert.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Depends: includes the non-default packages:
  'car', 'pdist', 'pls', 'gplots', 'mvtnorm', 'robustbase', 'gtools',
  'bitops', 'caTools', 'pcaPP', 'rrcov'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/muma/muma.Rcheck/00install.out' for details.
'library' or 'require' calls to packages already attached by Depends:
  'car' 'gplots' 'pdist' 'pls' 'rrcov'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'bitops' 'caTools' 'car' 'gplots' 'gtools' 'mvtnorm' 'pcaPP' 'pdist'
  'pls' 'robustbase' 'rrcov'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MuMIn/MuMIn.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mumm/mumm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/munfold/munfold.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/munsellinterpol/munsellinterpol.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/munsell/munsell.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/muRL/muRL.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/murphydiagram/murphydiagram.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/muRty/muRty.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/musica/musica.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/musicNMR/musicNMR.Rcheck/00install.out' for details.
plotFID: no visible global function definition for 'points'
Undefined global functions or variables:
  points
Consider adding
  importFrom("graphics", "points")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/music/music.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MUS/MUS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mustashe/mustashe.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/muStat/muStat.Rcheck/00install.out' for details.
prentice.test: no visible global function definition for 'is'
Undefined global functions or variables:
  is
Consider adding
  importFrom("methods", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mutossGUI/mutossGUI.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mutoss/mutoss.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mut/mut.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mutSignatures/mutSignatures.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mutualinf/mutualinf.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MuViCP/MuViCP.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvabund/mvabund.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVA/MVA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVar.pt/MVar.pt.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVar/MVar.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MvBinary/MvBinary.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVB/MVB.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvbutils/mvbutils.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvcluster/mvcluster.Rcheck/00install.out' for details.
Package required but not available: 'rattle'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvctm/mvctm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvdalab/mvdalab.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvglmmRank/mvglmmRank.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvGPS/mvGPS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvinfluence/mvinfluence.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVisAGe/MVisAGe.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVLM/MVLM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvLSW/mvLSW.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvmesh/mvmesh.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvmeta/mvmeta.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvMISE/mvMISE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvMonitoring/mvMonitoring.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvMORPH/mvMORPH.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvna/mvna.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVNBayesian/MVNBayesian.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvnfast/mvnfast.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvngGrAd/mvngGrAd.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvnormalTest/mvnormalTest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvnormtest/mvnormtest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvnpermute/mvnpermute.Rcheck/00install.out' for details.
mvnpermute: no visible global function definition for 'lm'
mvnpermute: no visible global function definition for 'coef'
mvnpermute: no visible global function definition for 'resid'
Undefined global functions or variables:
  coef lm resid
Consider adding
  importFrom("stats", "coef", "lm", "resid")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVN/MVN.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVNtestchar/MVNtestchar.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'ggplot2' 'grDevices' 'knitr' 'utils'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvnTest/mvnTest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvord/mvord.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvoutlier/mvoutlier.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvPot/mvPot.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvp/mvp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvProbit/mvProbit.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvprpb/mvprpb.Rcheck/00install.out' for details.
mvorpb: no visible global function definition for 'pnorm'
mvorpb: no visible global function definition for 'dnorm'
Undefined global functions or variables:
  dnorm pnorm
Consider adding
  importFrom("stats", "dnorm", "pnorm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvQuad/mvQuad.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVQuickGraphs/MVQuickGraphs.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVR/MVR.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvrsquared/mvrsquared.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvrtn/mvrtn.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvShapiroTest/mvShapiroTest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvSLOUCH/mvSLOUCH.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'matrixcalc'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvst/mvst.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVTests/MVTests.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvtmeta/mvtmeta.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvtnorm/mvtnorm.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MVT/MVT.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mvtsplot/mvtsplot.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'RColorBrewer' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'RColorBrewer'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mwa/mwa.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mwaved/mwaved.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MWLasso/MWLasso.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MWRidge/MWRidge.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MWright/MWright.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mwshiny/mwshiny.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mxkssd/mxkssd.Rcheck/00install.out' for details.
mxkssd: no visible global function definition for 'txtProgressBar'
mxkssd: no visible global function definition for 'setTxtProgressBar'
Undefined global functions or variables:
  setTxtProgressBar txtProgressBar
Consider adding
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mxmmod/mxmmod.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/MXM/MXM.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'knitr'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mycobacrvR/mycobacrvR.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
abcpred_nmer: no visible global function definition for 'write.table'
algpred: no visible global function definition for 'read.table'
algpred: no visible global function definition for 'write.table'
allermatch: no visible global function definition for 'read.table'
allermatch: no visible global function definition for 'write.table'
bcepred_nmer: no visible global function definition for 'write.table'
bimas_nmer: no visible global function definition for 'write.table'
filter.firstlayer: no visible global function definition for
  'read.table'
filter.firstlayer: no visible global function definition for
  'write.table'
iedb_arb_mhci_nmer: no visible global function definition for
  'write.table'
iedb_arb_mhcii_nmer: no visible global function definition for
  'write.table'
iedb_consensus_mhci_nmer: no visible global function definition for
  'write.table'
iedb_consensus_mhcii_nmer: no visible global function definition for
  'write.table'
netmhcNN_nmer: no visible global function definition for 'write.table'
netmhcWT_nmer: no visible global function definition for 'write.table'
propred_nmer: no visible global function definition for 'write.table'
Undefined global functions or variables:
  read.table write.table
Consider adding
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mycor/mycor.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Myrrixjars/Myrrixjars.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Myrrix/Myrrix.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/My.stepwise/My.stepwise.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'taxize'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/mztwinreg/mztwinreg.Rcheck/00install.out' for details.
abs_dif: no visible global function definition for 'as.formula'
env_dif: no visible global function definition for 'lm'
env_dif: no visible global function definition for 'as.formula'
env_dif_logistic: no visible global function definition for
  'as.formula'
fam_env: no visible global function definition for 'as.formula'
log_dif: no visible global function definition for 'as.formula'
Undefined global functions or variables:
  as.formula lm
Consider adding
  importFrom("stats", "as.formula", "lm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/n1qn1/n1qn1.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/N2H4/N2H4.Rcheck/00install.out' for details.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(N2H4)
  > 
  > test_check("N2H4")
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-func.R:23:3): getContent ────────────────────────────────────────
  Error: missing value where TRUE/FALSE needed
  Backtrace:
      █
   1. └─N2H4::getContent(url) test-func.R:23:2
   2.   └─N2H4::getContentDatetime(html_obj)
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 6 ]
  Error: Test failures
  Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/N2R/N2R.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/naaccr/naaccr.Rcheck/00install.out' for details.
Note: found 50 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nabor/nabor.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NACHO/NACHO.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NADA2/NADA2.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'Kendall' 'perm'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NADA/NADA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NADIA/NADIA.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'glmnet' 'mlr3learners'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package which this enhances but not available for checking: 'asreml'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nadiv/nadiv.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NAEPirtparams/NAEPirtparams.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NAEPprimer/NAEPprimer.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/naijR/naijR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/naivebayes/naivebayes.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/naivereg/naivereg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nakagami/nakagami.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 're2r'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/namedCapture/namedCapture.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NameNeedle/NameNeedle.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/namer/namer.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/namespace/namespace.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nametagger/nametagger.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NAM/NAM.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nandb/nandb.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/naniar/naniar.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nanop/nanop.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nanostringr/nanostringr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nanotime/nanotime.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/naptime/naptime.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nardl/nardl.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/narray/narray.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nasadata/nasadata.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nasapower/nasapower.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nasaweather/nasaweather.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'spatialClust'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/naspaclust/naspaclust.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'Rdpack'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/natcpp/natcpp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/natmanager/natmanager.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nat.nblast/nat.nblast.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/na.tools/na.tools.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Packages suggested but not available for checking: 'XML', 'webshot2'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nat/nat.Rcheck/00install.out' for details.
Package unavailable to check Rd xrefs: 'XML'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/natserv/natserv.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'gurobi'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/natstrat/natstrat.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nat.templatebrains/nat.templatebrains.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/naturaList/naturaList.Rcheck/00install.out' for details.
Note: found 3 marked Latin-1 strings
  Note: found 7187 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/natural/natural.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/naturalsort/naturalsort.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NatureSounds/NatureSounds.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'tuneR'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nat.utils/nat.utils.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nawtilus/nawtilus.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NBAloveR/NBAloveR.Rcheck/00install.out' for details.
Note: found 140 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nbapalettes/nbapalettes.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'DEXSeq'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NBBttest/NBBttest.Rcheck/00install.out' for details.
Package unavailable to check Rd xrefs: 'DEXSeq'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NbClust/NbClust.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nbconvertR/nbconvertR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NBDdirichlet/NBDdirichlet.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NBDesign/NBDesign.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nberwp/nberwp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NBLDA/NBLDA.Rcheck/00install.out' for details.
Package unavailable to check Rd xrefs: 'sSeq'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NB.MClust/NB.MClust.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nbpMatching/nbpMatching.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NBPSeq/NBPSeq.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NB/NB.Rcheck/00install.out' for details.
NB.estimator: no visible global function definition for 'optimize'
NB.estimator: no visible global function definition for 'uniroot'
NB.example.dataset: no visible global function definition for
  'write.table'
Undefined global functions or variables:
  optimize uniroot write.table
Consider adding
  importFrom("stats", "optimize", "uniroot")
  importFrom("utils", "write.table")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NBR/NBR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NBShiny2/NBShiny2.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'caret' 'datasets' 'dplyr' 'e1071' 'rhandsontable' 'shiny'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NBShiny3/NBShiny3.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'caret' 'datasets' 'dplyr' 'e1071' 'rhandsontable' 'shiny'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NBShiny/NBShiny.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'caret' 'datasets' 'dplyr' 'e1071' 'rhandsontable' 'shiny'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nbTransmission/nbTransmission.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nCal/nCal.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncappc/ncappc.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'bookdown'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NCA/NCA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncar/ncar.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncbit/ncbit.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
ncbit : FUN: no visible global function definition for 'read.table'
ncbit : FUN: no visible global function definition for 'head'
Undefined global functions or variables:
  head read.table
Consider adding
  importFrom("utils", "head", "read.table")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncdf4.helpers/ncdf4.helpers.Rcheck/00install.out' for details.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(ncdf4.helpers)
  > 
  > test_check("ncdf4.helpers")
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (test-file-functions.R:61:2): grid mappings are read and applied ────
  (latlon.data$x + 360)%%360 not equal to lon.dat[indices].
  4/4 mismatches (average diff: 112)
  [1] 329 - 233 ==   96.2
  [2] 197 - 293 ==  -96.2
  [3] 208 - 336 == -128.2
  [4] 318 - 190 ==  128.2
  ── Failure (test-file-functions.R:62:2): grid mappings are read and applied ────
  latlon.data$y not equal to lat.dat[indices].
  4/4 mismatches (average diff: 28)
  [1] 49.5 - 12.4 ==  37.1
  [2] 49.5 - 12.4 ==  37.1
  [3] 40.4 - 59.1 == -18.8
  [4] 40.4 - 59.1 == -18.8
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 45 ]
  Error: Test failures
  Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncdf4/ncdf4.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncdfgeom/ncdfgeom.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncdump/ncdump.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nCDunnett/nCDunnett.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncf/ncf.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncg/ncg.Rcheck/00install.out' for details.
d0: no visible global function definition for 'qnorm'
dncgamma: no visible global function definition for 'dpois'
indncgamma: no visible global function definition for 'pgamma'
indncgamma: no visible global function definition for 'dpois'
inxncgamma: no visible global function definition for 'qnorm'
inxncgamma: no visible global function definition for 'pgamma'
inxncgamma: no visible global function definition for 'dpois'
pncgamma: no visible global function definition for 'pgamma'
pncgamma: no visible global function definition for 'dpois'
Undefined global functions or variables:
  dpois pgamma qnorm
Consider adding
  importFrom("stats", "dpois", "pgamma", "qnorm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncmeta/ncmeta.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NCmisc/NCmisc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncodeR/ncodeR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nCopula/nCopula.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'Deriv' 'compiler' 'stringi'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nCov2019/nCov2019.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncpen/ncpen.Rcheck/00install.out' for details.
Package suggested but not available for checking: 're2r'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nc/nc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NCSampling/NCSampling.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NCSCopula/NCSCopula.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NCutYX/NCutYX.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ncvreg/ncvreg.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ndjson/ndjson.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ndl/ndl.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NDP/NDP.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'shiny'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ndtv/ndtv.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nearfar/nearfar.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neariso/neariso.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neatmaps/neatmaps.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neatRanges/neatRanges.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neat/neat.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neatStats/neatStats.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/needmining/needmining.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/needs/needs.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/needy/needy.Rcheck/00install.out' for details.
BugReports field is not a suitable URL but contains an email address:
   use the Contact field instead
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NEff/NEff.Rcheck/00install.out' for details.
population: no visible global function definition for 'weighted.mean'
population: no visible global function definition for 'rpois'
population: no visible global function definition for 'lm'
population: no visible global function definition for 'coefficients'
population: no visible global function definition for 'sd'
population: no visible global function definition for 'par'
population: no visible global function definition for 'lines'
Undefined global functions or variables:
  coefficients lines lm par rpois sd weighted.mean
Consider adding
  importFrom("graphics", "lines", "par")
  importFrom("stats", "coefficients", "lm", "rpois", "sd",
             "weighted.mean")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NegBinBetaBinreg/NegBinBetaBinreg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/negenes/negenes.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Neighboot/Neighboot.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'magrittr'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neighbr/neighbr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neo2R/neo2R.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neo4jshell/neo4jshell.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neo4r/neo4r.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'igraph' 'rlang' 'tidyselect'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NEONiso/NEONiso.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neonstore/neonstore.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neonUtilities/neonUtilities.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neotoma/neotoma.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nephro/nephro.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NEpiC/NEpiC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neptune/neptune.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'dataone'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NestedCategBayesImpute/NestedCategBayesImpute.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nestfs/nestfs.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nestr/nestr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netassoc/netassoc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netchain/netchain.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetCluster/NetCluster.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netClust/netClust.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netCoin/netCoin.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetComp/NetComp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netcom/netcom.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'ggfortify' 'ggplot2' 'ggraph' 'reshape2'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netcontrol/netcontrol.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetData/NetData.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netdiffuseR/netdiffuseR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netgen/netgen.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'RCy3'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netgwas/netgwas.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetIndices/NetIndices.Rcheck/00install.out' for details.
EnvInd: no visible global function definition for 'sd'
Undefined global functions or variables:
  sd
Consider adding
  importFrom("stats", "sd")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netjack/netjack.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'Rdpack'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'fastshp'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetLogoR/NetLogoR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netmeta/netmeta.Rcheck/00install.out' for details.
Note: found 1 marked UTF-8 string
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netmhc2pan/netmhc2pan.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetMix/NetMix.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetOrigin/NetOrigin.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netplot/netplot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetPreProc/NetPreProc.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netrankr/netrankr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netregR/netregR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetRep/NetRep.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetSci/NetSci.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'CoDiNA'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netseg/netseg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netSEM/netSEM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetSimR/NetSimR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nets/nets.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/netstat/netstat.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetSwan/NetSwan.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nettskjemar/nettskjemar.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetWeaver/NetWeaver.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/networkABC/networkABC.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetworkChange/NetworkChange.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'sna'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetworkComparisonTest/NetworkComparisonTest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/networkD3/networkD3.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetworkDistance/NetworkDistance.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/networkDynamicData/networkDynamicData.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/networkDynamic/networkDynamic.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetworkExtinction/NetworkExtinction.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/networkGen/networkGen.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'mgcv' 'stats'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetworkInference/NetworkInference.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/network/network.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetworkReg/NetworkReg.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/networkreporting/networkreporting.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetworkRiskMeasures/NetworkRiskMeasures.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/networkR/networkR.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/networksis/networksis.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/networkTomography/networkTomography.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NetworkToolbox/NetworkToolbox.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/networktools/networktools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/networktree/networktree.Rcheck/00install.out' for details.
Note: found 2 marked Latin-1 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neuralnet/neuralnet.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NeuralNetTools/NeuralNetTools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neural/neural.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
mlptrain : rect: no visible global function definition for 'polygon'
mlptrain : drawnet: no visible global function definition for 'title'
mlptrain : drawnet: no visible global function definition for 'polygon'
mlptrain : drawnet: no visible global function definition for 'text'
mlptrain : drawnet: no visible global function definition for 'lines'
mlptrain: no visible global function definition for 'runif'
mlptrain: no visible global function definition for 'locator'
mlptrain: no visible global function definition for 'polygon'
mlptrain: no visible global function definition for 'text'
rbftrain : rect: no visible global function definition for 'polygon'
rbftrain : drawnet: no visible global function definition for 'title'
rbftrain : drawnet: no visible global function definition for 'polygon'
rbftrain : drawnet: no visible global function definition for 'text'
rbftrain : drawnet: no visible global function definition for 'lines'
rbftrain : graph: no visible global function definition for 'title'
rbftrain : graph: no visible global function definition for 'polygon'
rbftrain : graph: no visible global function definition for 'text'
rbftrain : graph: no visible global function definition for 'lines'
rbftrain : graph: no visible global function definition for 'points'
rbftrain: no visible global function definition for 'runif'
rbftrain: no visible global function definition for 'locator'
rbftrain: no visible global function definition for 'polygon'
rbftrain: no visible global function definition for 'text'
rbftrain: no visible global function definition for 'kmeans'
Undefined global functions or variables:
  kmeans lines locator points polygon runif text title
Consider adding
  importFrom("graphics", "lines", "locator", "points", "polygon", "text",
             "title")
  importFrom("stats", "kmeans", "runif")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NeuralSens/NeuralSens.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neurobase/neurobase.Rcheck/00install.out' for details.
Running examples in 'neurobase-Ex.R' failed
The error most likely occurred in:

> ### Name: boxplot.nifti
> ### Title: Boxplot of Values in an Image
> ### Aliases: boxplot.nifti boxplot.anlz
> 
> ### ** Examples
> 
> img = nifti(array(rnorm(10^3), dim = rep(10, 3)))
> mask = img > 0
> boxplot(img)
> boxplot(img, mask = mask)
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Error in plot.window(xlim = xlim, ylim = ylim, log = log, yaxs = pars$yaxs) : 
  need finite 'ylim' values
Calls: boxplot ... boxplot.default -> do.call -> <Anonymous> -> plot.window
Execution halted
Error(s) in re-building vignettes:
--- re-building 'neurobase.Rmd' using rmarkdown
Quitting from lines 459-460 (neurobase.Rmd) 
Error: processing vignette 'neurobase.Rmd' failed with diagnostics:
need at least 2 points to select a bandwidth automatically
--- failed re-building 'neurobase.Rmd'

--- re-building 'nifti_basics.Rmd' using rmarkdown
--- finished re-building 'nifti_basics.Rmd'

--- re-building 'simple_io.Rmd' using rmarkdown
trying URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz'
 length 21807043 bytes (20.8 MB)
==================================================
downloaded 20.8 MB

--- finished re-building 'simple_io.Rmd'

SUMMARY: processing the following file failed:
  'neurobase.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neuroblastoma/neuroblastoma.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neurocInstall/neurocInstall.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neurohcp/neurohcp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neuroim/neuroim.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neuromplex/neuromplex.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neuRosim/neuRosim.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neutralitytestr/neutralitytestr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/neverhpfilter/neverhpfilter.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Newdistns/Newdistns.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/newFocus/newFocus.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NewmanOmics/NewmanOmics.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/newsanchor/newsanchor.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'devtools' 'xml2'
  All declared Imports should be used.
Note: found 318 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/newscatcheR/newscatcheR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/newsmap/newsmap.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'stringi'
  All declared Imports should be used.
Note: found 4485 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/newsmd/newsmd.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/newTestSurvRec/newTestSurvRec.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nFactors/nFactors.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nFCA/nFCA.Rcheck/00install.out' for details.
nfca : nFCAmain: no visible global function definition for 'hist'
nfca : nFCAmain: no visible global function definition for
  'flush.console'
nfca : nFCAmain: no visible global function definition for 'qnorm'
nfca : nFCAmain: no visible global function definition for 'read.csv'
nfca : nFCAmain: no visible global function definition for 'cor'
nfca : nFCAmain: no visible global function definition for 'as.dist'
nfca : nFCAmain: no visible global function definition for 'cophenetic'
nfca : nFCAmain: no visible global function definition for 'hclust'
nfca : thresholdTEST: no visible global function definition for
  'read.csv'
nfca : gScript: no visible global function definition for 'read.csv'
nfca : gScript0: no visible global function definition for 'read.csv'
nfca : gMatrix: no visible global function definition for 'read.csv'
nfca: no visible global function definition for 'cor'
Undefined global functions or variables:
  as.dist cophenetic cor flush.console hclust hist qnorm read.csv
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "as.dist", "cophenetic", "cor", "hclust", "qnorm")
  importFrom("utils", "flush.console", "read.csv")
to your NAMESPACE file.
Running examples in 'nFCA-Ex.R' failed
The error most likely occurred in:

> ### Name: nfca
> ### Title: Numerical Formal Concept Analysis for Systematic Clustering
> ### Aliases: nfca
> 
> ### ** Examples
> 
> # View a build-in correlation matrix: nfca_example
> data("nfca_example", package = "nFCA")
> nfca_example
      H    W    S    D   HF   HM   WF   WM   H1   W1    O
1  1.00 0.95 0.90 0.90 0.85 0.85 0.80 0.80 0.40 0.30 0.10
2  0.95 1.00 0.88 0.88 0.70 0.70 0.87 0.87 0.20 0.45 0.15
3  0.90 0.88 1.00 0.82 0.80 0.80 0.76 0.76 0.10 0.10 0.02
4  0.90 0.88 0.82 1.00 0.82 0.82 0.81 0.81 0.10 0.10 0.05
5  0.85 0.70 0.80 0.82 1.00 0.95 0.65 0.65 0.08 0.06 0.01
6  0.85 0.70 0.80 0.82 0.95 1.00 0.60 0.60 0.06 0.07 0.01
7  0.80 0.87 0.76 0.81 0.65 0.60 1.00 0.95 0.03 0.05 0.01
8  0.80 0.87 0.76 0.81 0.65 0.60 0.95 1.00 0.01 0.02 0.01
9  0.40 0.20 0.10 0.10 0.08 0.06 0.03 0.01 1.00 0.02 0.01
10 0.30 0.45 0.10 0.10 0.06 0.07 0.05 0.02 0.02 1.00 0.02
11 0.10 0.15 0.02 0.05 0.01 0.01 0.01 0.01 0.01 0.02 1.00
>      
> # 1. using the default 'histogram' method and choosing threshold
> # automatically   
> nfca(data = nfca_example)
Warning in system("ruby multistagefca.rb") : 'ruby' not found
Warning in file.rename("example.dot", "example.txt") :
  cannot rename file 'example.dot' to 'example.txt', reason 'The system cannot find the file specified'
Warning in file(file, "rt") :
  cannot open file 'example.txt': No such file or directory
Error in file(file, "rt") : cannot open the connection
Calls: nfca ... thresholdTEST -> as.matrix -> read.csv -> read.table -> file
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NFCP/NFCP.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'Rdpack' 'curl' 'mathjaxr'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nfl4th/nfl4th.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nflfastR/nflfastR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nflreadr/nflreadr.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'curl' 'qs'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nflseedR/nflseedR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NFLSimulatoR/NFLSimulatoR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'KEGGgraph'

Package suggested but not available for checking: 'NFPdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NFWdist/NFWdist.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NGBVS/NGBVS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NGLVieweR/NGLVieweR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ngram/ngram.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ngramr/ngramr.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'lifecycle'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ngramrr/ngramrr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ngspatial/ngspatial.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NGSSEML/NGSSEML.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nhanesA/nhanesA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NHANES/NHANES.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nhdplusTools/nhdplusTools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nhdR/nhdR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nhlapi/nhlapi.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NHLData/NHLData.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nhlscrape/nhlscrape.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NHMM/NHMM.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nhm/nhm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NHMSAR/NHMSAR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NHPoisson/NHPoisson.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NHSDataDictionaRy/NHSDataDictionaRy.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'tibble'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nhsnumber/nhsnumber.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nhs.predict/nhs.predict.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NHSRdatasets/NHSRdatasets.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'tibble'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nhstplot/nhstplot.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nicheROVER/nicheROVER.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nichevol/nichevol.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nifti.io/nifti.io.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NightDay/NightDay.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nightmares/nightmares.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'rgdal' 'sp'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nilde/nilde.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NIMAA/NIMAA.Rcheck/00install.out' for details.
Note: found 24 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nima/nima.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nimbleCarbon/nimbleCarbon.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nimbleEcology/nimbleEcology.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'Introduction_to_nimbleEcology.Rmd' using rmarkdown
Quitting from lines 156-160 (Introduction_to_nimbleEcology.Rmd) 
Error: processing vignette 'Introduction_to_nimbleEcology.Rmd' failed with diagnostics:
Failed to create the shared library. Run 'printErrors()' to see the compilation errors.

--- failed re-building 'Introduction_to_nimbleEcology.Rmd'

SUMMARY: processing the following file failed:
  'Introduction_to_nimbleEcology.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nimble/nimble.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nimbleSCR/nimbleSCR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nimbleSMC/nimbleSMC.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nipals/nipals.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nipnTK/nipnTK.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package which this enhances but not available for checking: 'jpndistrict'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NipponMap/NipponMap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NIPTeR/NIPTeR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NIRStat/NIRStat.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NISTnls/NISTnls.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NISTunits/NISTunits.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Note: found 170 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NITPicker/NITPicker.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nitrcbot/nitrcbot.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NitrogenUptake2016/NitrogenUptake2016.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nivm/nivm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nixmass/nixmass.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nJira/nJira.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'rjson'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/njtr1/njtr1.Rcheck/00install.out' for details.
Note: found 4 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlaR/nlaR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NlcOptim/NlcOptim.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'MLInterfaces'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nleqslv/nleqslv.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NlinTS/NlinTS.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlirms/nlirms.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlist/nlist.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlmeODE/nlmeODE.Rcheck/00install.out' for details.
nlmeODE: no visible global function definition for 'deriv'
Undefined global functions or variables:
  deriv
Consider adding
  importFrom("stats", "deriv")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlme/nlme.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlmeU/nlmeU.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
Pwr.lme: no visible global function definition for 'anova'
Pwr.lme: no visible global function definition for 'qf'
Pwr.lme: no visible global function definition for 'pf'
logLik1.lme: no visible global function definition for 'coef'
logLik1.lme: no visible global function definition for 'model.matrix'
logLik1.lme: no visible global function definition for 'predict'
logLik1.lme: no visible global function definition for 'formula'
runScript: no visible binding for global variable 'example'
sigmaTolme: no visible global function definition for 'vcov'
simulateY.lme: no visible global function definition for 'runif'
simulateY.lme: no visible global function definition for 'fitted'
simulateY.lme: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  anova coef example fitted formula model.matrix pf predict qf rnorm
  runif vcov
Consider adding
  importFrom("stats", "anova", "coef", "fitted", "formula",
             "model.matrix", "pf", "predict", "qf", "rnorm", "runif",
             "vcov")
  importFrom("utils", "example")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlmixr/nlmixr.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlmm/nlmm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlmrt/nlmrt.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlMS/nlMS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlnet/nlnet.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nloptr/nloptr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NLPclient/NLPclient.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NLP/NLP.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlpred/nlpred.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'qdap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlraa/nlraa.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlreg/nlreg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NLRoot/NLRoot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlrr/nlrr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nls2/nls2.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'proto'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported objects imported by ':::' calls:
  'stats:::nlsModel' 'stats:::nlsModel.plinear'
  See the note in ?`:::` about the use of this operator.
nls2: no visible global function definition for 'nls.control'
nls2: no visible global function definition for 'as.formula'
nls2: no visible global function definition for 'coef'
nls2: no visible global function definition for 'runif'
nls2 : <anonymous>: no visible global function definition for
  'deviance'
Undefined global functions or variables:
  as.formula coef deviance nls.control runif
Consider adding
  importFrom("stats", "as.formula", "coef", "deviance", "nls.control",
             "runif")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlsem/nlsem.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlshelper/nlshelper.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlshrink/nlshrink.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlsMicrobio/nlsMicrobio.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlsmsn/nlsmsn.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nls.multstart/nls.multstart.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlsrk/nlsrk.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlsr/nlsr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlstac/nlstac.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlstools/nlstools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nltm/nltm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlt/nlt.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlts/nlts.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nLTT/nLTT.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'deSolve'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nlWaldTest/nlWaldTest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nmadb/nmadb.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'devtools' 'jsonlite'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NMADiagT/NMADiagT.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'INLA'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nmaINLA/nmaINLA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NMAoutlier/NMAoutlier.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nmaplateplot/nmaplateplot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nmathresh/nmathresh.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NMdata/NMdata.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NMFN/NMFN.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
nnmf_als: no visible global function definition for 'rnorm'
nnmf_mm: no visible global function definition for 'rnorm'
nnmf_prob: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  rnorm
Consider adding
  importFrom("stats", "rnorm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NMF/NMF.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NMI/NMI.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Nmisc/Nmisc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nmixgof/nmixgof.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nmm/nmm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NMOF/NMOF.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NMproject/NMproject.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nmslibR/nmslibR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NMVANOVA/NMVANOVA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nmw/nmw.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nna/nna.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NNbenchmark/NNbenchmark.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nnetpredint/nnetpredint.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nnet/nnet.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nnfor/nnfor.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'uroot'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nnGarrote/nnGarrote.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'multicool'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nngeo/nngeo.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nnlasso/nnlasso.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nnlib2Rcpp/nnlib2Rcpp.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nnls/nnls.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NNMIS/NNMIS.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nnspat/nnspat.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'Rdpack'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NNS/NNS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NNTbiomarker/NNTbiomarker.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nnTensor/nnTensor.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nnt/nnt.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'mlrCPO'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nntrf/nntrf.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'nntrf.Rmd' using rmarkdown
--- finished re-building 'nntrf.Rmd'

--- re-building 'nntrf_regresion.Rmd' using rmarkdown
Quitting from lines 21-25 (nntrf_regresion.Rmd) 
Error: processing vignette 'nntrf_regresion.Rmd' failed with diagnostics:
there is no package called 'mlrCPO'
--- failed re-building 'nntrf_regresion.Rmd'

--- re-building 'nntrf_tuning.Rmd' using rmarkdown
Quitting from lines 20-24 (nntrf_tuning.Rmd) 
Error: processing vignette 'nntrf_tuning.Rmd' failed with diagnostics:
there is no package called 'mlrCPO'
--- failed re-building 'nntrf_tuning.Rmd'

SUMMARY: processing the following files failed:
  'nntrf_regresion.Rmd' 'nntrf_tuning.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/noaaoceans/noaaoceans.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Packages required but not available: 'choroplethr', 'XML'

Package suggested but not available for checking: 'hurricaneexposuredata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/noah/noah.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'R6' 'crayon' 'digest' 'hash'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NobBS/NobBS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/noctua/noctua.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nodbi/nodbi.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'rlist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nodeHarvest/nodeHarvest.Rcheck/00install.out' for details.
makeRules: no visible global function definition for 'sd'
makeRules: no visible global function definition for 'rnorm'
nodeHarvest: no visible global function definition for 'capture.output'
nodeHarvest: no visible global function definition for 'lm'
nodeHarvest: no visible global function definition for 'coef'
plot.nodeHarvest: no visible global function definition for 'rgb'
Undefined global functions or variables:
  capture.output coef lm rgb rnorm sd
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("stats", "coef", "lm", "rnorm", "sd")
  importFrom("utils", "capture.output")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nodiv/nodiv.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nofrills/nofrills.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/noia/noia.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NoiseFiltersR/NoiseFiltersR.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'rJava'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/noise/noise.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/noisyCE2/noisyCE2.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/noisyr/noisyr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/noisySBM/noisySBM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nombre/nombre.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nomclust/nomclust.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NominalLogisticBiplot/NominalLogisticBiplot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nominatimlite/nominatimlite.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'rsdmx'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nomnoml/nomnoml.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nomogramEx/nomogramEx.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nomogramFormula/nomogramFormula.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nomordR/nomordR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NonCompart/NonCompart.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/noncompliance/noncompliance.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/noncomplyR/noncomplyR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'rlist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nonlinearICP/nonlinearICP.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NonlinearTSA/NonlinearTSA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nonlinearTseries/nonlinearTseries.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nonmem2R/nonmem2R.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nonmemica/nonmemica.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nonneg.cg/nonneg.cg.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nonnest2/nonnest2.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NonNorMvtDist/NonNorMvtDist.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Depends: includes the non-default packages:
  'lpSolve', 'gdata', 'Hmisc', 'rms', 'geometry', 'psych', 'pwt'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nonparaeff/nonparaeff.Rcheck/00install.out' for details.
'library' or 'require' calls to packages already attached by Depends:
  'Hmisc' 'gdata' 'geometry' 'lpSolve' 'psych' 'rms'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'Hmisc' 'gdata' 'geometry' 'lpSolve' 'psych' 'pwt' 'rms'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
additive: no visible global function definition for 'lp'
ar.dual.dea: no visible global function definition for 'lp'
cost.dea: no visible global function definition for 'lp'
ddf: no visible global function definition for 'lp'
dea: no visible global function definition for 'lp'
direc.dea: no visible global function definition for 'lp'
dual.dea: no visible global function definition for 'lp'
effdea.b.f: no visible global function definition for 'convhulln'
effdea.b.f: no visible global function definition for 'lp'
faremalm2: no visible binding for global variable 'Lag'
faremalm2: no visible global function definition for 'na.omit'
int.dea: no visible global function definition for 'lp'
lp2: no visible global function definition for 'lp'
revenue.dea: no visible global function definition for 'lp'
sbm.tone: no visible global function definition for 'lp'
sbm.vrs: no visible global function definition for 'lp'
Undefined global functions or variables:
  Lag convhulln lp na.omit
Consider adding
  importFrom("stats", "na.omit")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Nonpareil/Nonpareil.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nonpar/nonpar.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NonParRolCor/NonParRolCor.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NonpModelCheck/NonpModelCheck.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NonProbEst/NonProbEst.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'Matrix' 'e1071' 'glmnet'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nontargetData/nontargetData.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nontarget/nontarget.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nopaco/nopaco.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NO.PING.PONG/NO.PING.PONG.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nopp/nopp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nor1mix/nor1mix.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nordklimdata1/nordklimdata1.Rcheck/00install.out' for details.
Note: found 3 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nord/nord.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/norm2/norm2.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NormalBetaPrime/NormalBetaPrime.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NormalGamma/NormalGamma.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'histogram' 'optimx'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
dnormgam: no visible global function definition for 'qgamma'
dnormgam: no visible global function definition for 'fft'
dnormgam: no visible global function definition for 'dgamma'
dnormgam: no visible global function definition for 'approx'
normgam.fit : mkdfftNormalGammaOptim : <anonymous>: no visible global
  function definition for 'dnorm'
normgam.fit : estimation_param_normexp_RMA : max.density: no visible
  global function definition for 'density'
normgam.fit: no visible global function definition for 'sd'
normgam.fit: no visible global function definition for 'median'
normgam.fit: no visible global function definition for 'IQR'
normgam.fit: no visible global function definition for 'optimx'
normgam.fit: no visible global function definition for 'coef'
normgam.signal: no visible global function definition for 'approx'
normgam.signal: no visible global function definition for 'hist'
Undefined global functions or variables:
  IQR approx coef density dgamma dnorm fft hist median optimx qgamma sd
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "IQR", "approx", "coef", "density", "dgamma",
             "dnorm", "fft", "median", "qgamma", "sd")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NormalLaplace/NormalLaplace.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/normalp/normalp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/normalr/normalr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NORMA/NORMA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NormExpression/NormExpression.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NormPsy/NormPsy.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/norm/norm.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NORMT3/NORMT3.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/normtest/normtest.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
ajb.norm.test: no visible global function definition for 'rnorm'
frosini.norm.test: no visible global function definition for 'var'
frosini.norm.test: no visible global function definition for 'pnorm'
frosini.norm.test: no visible global function definition for 'rnorm'
geary.norm.test: no visible global function definition for 'rnorm'
hegazy1.norm.test: no visible global function definition for 'var'
hegazy1.norm.test: no visible global function definition for 'qnorm'
hegazy1.norm.test: no visible global function definition for 'rnorm'
hegazy2.norm.test: no visible global function definition for 'var'
hegazy2.norm.test: no visible global function definition for 'qnorm'
hegazy2.norm.test: no visible global function definition for 'rnorm'
jb.norm.test: no visible global function definition for 'rnorm'
kurtosis.norm.test: no visible global function definition for 'rnorm'
skewness.norm.test: no visible global function definition for 'rnorm'
spiegelhalter.norm.test: no visible global function definition for
  'rnorm'
wb.norm.test: no visible global function definition for 'qnorm'
wb.norm.test: no visible global function definition for 'var'
wb.norm.test: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  pnorm qnorm rnorm var
Consider adding
  importFrom("stats", "pnorm", "qnorm", "rnorm", "var")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/normwhn.test/normwhn.test.Rcheck/00install.out' for details.
normality.test1: no visible global function definition for 'cov.wt'
normality.test1: no visible global function definition for 'cor'
normality.test1: no visible global function definition for 'pnorm'
normality.test1: no visible global function definition for 'pchisq'
normality.test2: no visible global function definition for 'cov.wt'
normality.test2: no visible global function definition for 'cor'
normality.test2: no visible global function definition for 'acf'
normality.test2: no visible global function definition for 'pnorm'
normality.test2: no visible global function definition for 'pchisq'
whitenoise.test: no visible global function definition for 'acf'
whitenoise.test: no visible global function definition for 'spec.pgram'
whitenoise.test: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  acf cor cov.wt pchisq pnorm spec.pgram
Consider adding
  importFrom("stats", "acf", "cor", "cov.wt", "pchisq", "pnorm",
             "spec.pgram")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nortestARMA/nortestARMA.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nortest/nortest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nortsTest/nortsTest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nose/nose.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nosoi/nosoi.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nos/nos.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NostalgiR/NostalgiR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/notifyme/notifyme.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/notifyR/notifyR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/not/not.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/novelforestSG/novelforestSG.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nowcasting/nowcasting.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/noweb/noweb.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Nozzle.R1/Nozzle.R1.Rcheck/00install.out' for details.
.newReportId : <anonymous>: no visible global function definition for
  'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nparACT/nparACT.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nparcomp/nparcomp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nparLD/nparLD.Rcheck/00install.out' for details.
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nparMD/nparMD.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nparsurv/nparsurv.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPBayesImputeCat/NPBayesImputeCat.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npbr/npbr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPCD/NPCD.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPCirc/NPCirc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npcopTest/npcopTest.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npcp/npcp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPC/NPC.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npcure/npcure.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npde/npde.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npExact/npExact.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPflow/NPflow.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPHazardRate/NPHazardRate.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPHMC/NPHMC.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Packages in Depends field not imported from:
  'smcure' 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
NPHMC: no visible global function definition for 'integrate'
NPHMC: no visible global function definition for 'qnorm'
NPHMC: no visible global function definition for 'pnorm'
NPHMC: no visible global function definition for 'lines'
NPHMC: no visible global function definition for 'smcure'
NPHMC: no visible global function definition for 'coxph'
Undefined global functions or variables:
  coxph integrate lines pnorm qnorm smcure
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "integrate", "pnorm", "qnorm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nph/nph.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npIntFactRep/npIntFactRep.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPIstats/NPIstats.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'dplyr'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nplplot/nplplot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nplr/nplr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npmlda/npmlda.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPMLEcmprsk/NPMLEcmprsk.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPMLEmix/NPMLEmix.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'CAMAN' 'Hmisc' 'latexpdf' 'spatstat'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npmlreg/npmlreg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npmr/npmr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPMVCP/NPMVCP.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npmv/npmv.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npordtests/npordtests.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nppbib/nppbib.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npphen/npphen.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'rts'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPP/NPP.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nprcgenekeepr/nprcgenekeepr.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'rlang'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/np/np.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPRED/NPRED.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npregderiv/npregderiv.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npregfast/npregfast.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npreg/npreg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nprobust/nprobust.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nproc/nproc.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npROCRegression/npROCRegression.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nprotreg/nprotreg.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npsf/npsf.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NPS/NPS.Rcheck/00install.out' for details.
nps.test: no visible global function definition for 'qnorm'
nps.test: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  pnorm qnorm
Consider adding
  importFrom("stats", "pnorm", "qnorm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npsr/npsr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npst/npst.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npsurv/npsurv.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npsurvSS/npsurvSS.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nptest/nptest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/npwbs/npwbs.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NRejections/NRejections.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nricens/nricens.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'rlist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nsapi/nsapi.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nsarfima/nsarfima.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nscancor/nscancor.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NScluster/NScluster.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nsdr/nsdr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nse2r/nse2r.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nse/nse.Rcheck/00install.out' for details.
Package required but not available: 'RSelenium'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nseval/nseval.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nsga2R/nsga2R.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'mco'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
boundedPolyMutation: no visible global function definition for 'runif'
boundedSBXover: no visible global function definition for 'runif'
nsga2R : <anonymous>: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nsga3/nsga3.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'xgboost'
  All declared Imports should be used.
Running examples in 'nsga3-Ex.R' failed
The error most likely occurred in:

> ### Name: nsga3fs
> ### Title: NSGA III for Multi-Objective Feature Selection
> ### Aliases: nsga3fs
> 
> ### ** Examples
> 
> xgb_learner <- mlr::makeLearner("classif.xgboost", predict.type = "prob",
+                             par.vals = list(
+                             objective = "binary:logistic",
+                             eval_metric = "error",nrounds = 2))
Error in loadNamespace(x) : there is no package called 'XML'
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nsgp/nsgp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NSM3/NSM3.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NSO1212/NSO1212.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nspmix/nspmix.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nsprcomp/nsprcomp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nsRFA/nsRFA.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nsROC/nsROC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nsrr/nsrr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NST/NST.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NSUM/NSUM.Rcheck/00install.out' for details.
.mcmc.bar: no visible global function definition for 'rnorm'
.mcmc.bar: no visible global function definition for 'runif'
.mcmc.comb: no visible global function definition for 'rnorm'
.mcmc.comb: no visible global function definition for 'runif'
.mcmc.rd: no visible global function definition for 'rnorm'
.mcmc.rd: no visible global function definition for 'runif'
.mcmc.trans: no visible global function definition for 'rnorm'
.mcmc.trans: no visible global function definition for 'runif'
.simulate.bar: no visible global function definition for 'rlnorm'
.simulate.bar: no visible global function definition for 'rbeta'
.simulate.bar: no visible global function definition for 'rbinom'
.simulate.comb: no visible global function definition for 'rlnorm'
.simulate.comb: no visible global function definition for 'rbeta'
.simulate.comb: no visible global function definition for 'rbinom'
.simulate.rd: no visible global function definition for 'rlnorm'
.simulate.rd: no visible global function definition for 'rbinom'
.simulate.trans: no visible global function definition for 'rlnorm'
.simulate.trans: no visible global function definition for 'rbinom'
Undefined global functions or variables:
  rbeta rbinom rlnorm rnorm runif
Consider adding
  importFrom("stats", "rbeta", "rbinom", "rlnorm", "rnorm", "runif")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nsyllable/nsyllable.Rcheck/00install.out' for details.
Note: found 1 marked UTF-8 string
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NTS/NTS.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'MASS' 'Rdpack' 'base' 'graphics' 'parallel'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ntwk/ntwk.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nucim/nucim.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NUCOMBog/NUCOMBog.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nullabor/nullabor.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'forecast' 'rlang' 'tsibble' 'viridis'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/numbersBR/numbersBR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/numbers/numbers.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/numDeriv/numDeriv.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Numero/Numero.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/numform/numform.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/numGen/numGen.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/numKM/numKM.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/numOSL/numOSL.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NutrienTrackeR/NutrienTrackeR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nutriNetwork/nutriNetwork.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/NVCSSL/NVCSSL.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nvctr/nvctr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'grImport2'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nVennR/nVennR.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nvmix/nvmix.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nycflights13/nycflights13.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nzelect/nzelect.Rcheck/00install.out' for details.
Note: found 6409 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nzffdr/nzffdr.Rcheck/00install.out' for details.
Note: found 1 marked UTF-8 string
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nzilbb.labbcat/nzilbb.labbcat.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/nzpullover/nzpullover.Rcheck/00install.out' for details.
Note: found 7284 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'socialmixr'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/o2geosocial/o2geosocial.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oaColors/oaColors.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OAIHarvester/OAIHarvester.Rcheck/00install.out' for details.
Errors in running code in vignettes:
when running code in 'oaih.Rnw'

> library("OAIHarvester")

> baseurl <- "http://epub.wu.ac.at/cgi/oai2"

> if (inherits(tryCatch(oaih_identify(baseurl), error = identity), 
+     "error")) q()
> proc.time()
   user  system elapsed 
   0.46    0.10   10.59 

... incomplete output.  Crash?

  'oaih.Rnw' using 'UTF-8'... failed to complete the test
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oai/oai.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oaPlots/oaPlots.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oaqc/oaqc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Oarray/Oarray.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OasisR/OasisR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oaxaca/oaxaca.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/obAnalytics/obAnalytics.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OBASpatial/OBASpatial.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/obfuscatoR/obfuscatoR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/objectProperties/objectProperties.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/objectremover/objectremover.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/objectSignals/objectSignals.Rcheck/00install.out' for details.
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'methods'
A package should be listed in only one of these fields.
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Signal.gen: no visible global function definition for 'new'
Undefined global functions or variables:
  new
Consider adding
  importFrom("methods", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/obliqueRF/obliqueRF.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'ROCR' 'e1071' 'mda' 'pls'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
log_wrapper: no visible global function definition for 'glm'
log_wrapper: no visible global function definition for 'binomial'
log_wrapper: no visible global function definition for 'coef'
log_wrapper: no visible global function definition for 'anova'
obliqueRF.default: no visible binding for global variable 'predict'
obliqueRF.default: no visible global function definition for
  'prediction'
obliqueRF.default: no visible global function definition for
  'performance'
pls_wrapper: no visible global function definition for 'kernelpls.fit'
pls_wrapper: no visible global function definition for 'coef'
ridge_slow_wrapper: no visible global function definition for
  'gen.ridge'
ridge_slow_wrapper: no visible global function definition for 'predict'
ridge_svd_wrapper: no visible global function definition for
  'gen.ridge'
rnd_wrapper: no visible global function definition for 'rnorm'
svm_wrapper: no visible global function definition for 'svm'
svm_wrapper: no visible global function definition for 'predict'
Undefined global functions or variables:
  anova binomial coef gen.ridge glm kernelpls.fit performance predict
  prediction rnorm svm
Consider adding
  importFrom("stats", "anova", "binomial", "coef", "glm", "predict",
             "rnorm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/obliqueRSF/obliqueRSF.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OBMbpkg/OBMbpkg.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/obs.agree/obs.agree.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
IBMD: no visible global function definition for 'runif'
IBMD: no visible global function definition for 'quantile'
RAI: no visible global function definition for 'runif'
RAI: no visible global function definition for 'quantile'
Undefined global functions or variables:
  quantile runif
Consider adding
  importFrom("stats", "quantile", "runif")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Observation/Observation.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/observer/observer.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OBsMD/OBsMD.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/obsSens/obsSens.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
obsSensCCC: no visible global function definition for 'coef'
obsSensCCC: no visible global function definition for 'confint'
obsSensCCN: no visible global function definition for 'coef'
obsSensCCN: no visible global function definition for 'confint'
obsSensCNN: no visible global function definition for 'coef'
obsSensCNN: no visible global function definition for 'confint'
obsSensCNN: no visible global function definition for 'sd'
obsSensCNN: no visible global function definition for 'model.matrix'
obsSensNNN: no visible global function definition for 'coef'
obsSensNNN: no visible global function definition for 'confint'
obsSensNNN: no visible global function definition for 'sd'
obsSensNNN: no visible global function definition for 'model.matrix'
Undefined global functions or variables:
  coef confint model.matrix sd
Consider adding
  importFrom("stats", "coef", "confint", "model.matrix", "sd")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OCA/OCA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'taxize'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/occ/occ.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/occupancy/occupancy.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ocd/ocd.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oceanis/oceanis.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'units'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oceanmap/oceanmap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OceanView/OceanView.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oceanwaves/oceanwaves.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ocedata/ocedata.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'XML'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oce/oce.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ockc/ockc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oclust/oclust.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OCNet/OCNet.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ocomposition/ocomposition.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ocp/ocp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oc/oc.Rcheck/00install.out' for details.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OCSdata/OCSdata.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ODataQuery/ODataQuery.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'R6'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/odbc/odbc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ODB/ODB.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/odds.converter/odds.converter.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/odds.n.ends/odds.n.ends.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'MASS'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OddsPlotty/OddsPlotty.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'caret' 'e1071' 'ggthemes' 'mlbench'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oddsratio/oddsratio.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oddstream/oddstream.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'RColorBrewer' 'graphics'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/odeGUTS/odeGUTS.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/odeintr/odeintr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ODEnetwork/ODEnetwork.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ODEsensitivity/ODEsensitivity.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/odin/odin.Rcheck/00install.out' for details.
Running examples in 'odin-Ex.R' failed
The error most likely occurred in:

> ### Name: can_compile
> ### Title: Test if compilation is possible
> ### Aliases: can_compile
> 
> ### ** Examples
> 
> can_compile() # will take ~0.1s the first time
Loading required namespace: pkgbuild
WARNING: Rtools is required to build R packages, but is not currently installed.

Please download and install Rtools 4.0 from https://cran.r-project.org/bin/windows/Rtools/.
WARNING: Rtools is required to build R packages, but is not currently installed.

Please download and install Rtools 4.0 from https://cran.r-project.org/bin/windows/Rtools/.
Error: Could not find tools necessary to compile a package
Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'discrete.Rmd' using rmarkdown
Quitting from lines 192-194 (discrete.Rmd) 
Error: processing vignette 'discrete.Rmd' failed with diagnostics:
Could not find tools necessary to compile a package
Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.
--- failed re-building 'discrete.Rmd'

--- re-building 'functions.Rmd' using rmarkdown
--- finished re-building 'functions.Rmd'

--- re-building 'odin.Rmd' using rmarkdown
Quitting from lines 58-59 (odin.Rmd) 
Error: processing vignette 'odin.Rmd' failed with diagnostics:
Could not find tools necessary to compile a package
Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.
--- failed re-building 'odin.Rmd'

SUMMARY: processing the following files failed:
  'discrete.Rmd' 'odin.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/odk/odk.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/odpc/odpc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/od/od.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/odr/odr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ODS/ODS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'rsdmx'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OEFPIL/OEFPIL.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oem/oem.Rcheck/00install.out' for details.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OenoKPM/OenoKPM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/officedown/officedown.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/officer/officer.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/offlineChange/offlineChange.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ofGEM/ofGEM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OGI/OGI.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oglmx/oglmx.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ohenery/ohenery.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Ohit/Ohit.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OHPL/OHPL.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ohtadstats/ohtadstats.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oii/oii.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OjaNP/OjaNP.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ojsr/ojsr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/okmesonet/okmesonet.Rcheck/00install.out' for details.
avgokmts: no visible global function definition for 'aggregate'
downloadstn: no visible global function definition for 'read.csv'
nearstn: no visible binding for global variable 'okstations'
nearstn: no visible binding for global variable 'Commissioned'
nearstn: no visible binding for global variable 'Decommissioned'
okcurobs: no visible global function definition for 'read.csv'
okmts: no visible binding for global variable 'okstations'
okmts: no visible binding for global variable 'TIME'
retrievemts: no visible global function definition for 'read.csv'
totalprecip: no visible binding for global variable 'TIME'
totalprecip: no visible global function definition for 'aggregate'
vincenty: no visible global function definition for 'runif'
Undefined global functions or variables:
  Commissioned Decommissioned TIME aggregate okstations read.csv runif
Consider adding
  importFrom("stats", "aggregate", "runif")
  importFrom("utils", "read.csv")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OkNNE/OkNNE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/olctools/olctools.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ollggamma/ollggamma.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/olr/olr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OLScurve/OLScurve.Rcheck/00install.out' for details.
OLScurve: no visible global function definition for 'as.formula'
OLScurve: no visible global function definition for 'na.omit'
OLScurve: no visible global function definition for 'lm'
OLScurve: no visible global function definition for 'predict'
OLScurve: no visible global function definition for 'residuals'
OLScurve: no visible global function definition for 'model.frame'
OLScurve: no visible global function definition for 'model.matrix'
plot.OLScurve : plotOLScurve: no visible global function definition for
  'reshape'
print.OLScurve: no visible global function definition for 'na.omit'
print.OLScurve: no visible global function definition for 'model.frame'
print.OLScurve: no visible global function definition for
  'model.matrix'
print.OLScurve: no visible global function definition for 'cov'
print.OLScurve: no visible global function definition for 'cor'
print.OLScurve: no visible global function definition for 'sd'
subjplot.OLScurve : plotOLScurve: no visible global function definition
  for 'devAskNewPage'
subjplot.OLScurve : plotOLScurve: no visible global function definition
  for 'reshape'
subjplot.OLScurve : plotOLScurve : mypanel: no visible global function
  definition for 'gray'
subjplot.OLScurve: no visible global function definition for
  'devAskNewPage'
Undefined global functions or variables:
  as.formula cor cov devAskNewPage gray lm model.frame model.matrix
  na.omit predict reshape residuals sd
Consider adding
  importFrom("grDevices", "devAskNewPage", "gray")
  importFrom("stats", "as.formula", "cor", "cov", "lm", "model.frame",
             "model.matrix", "na.omit", "predict", "reshape",
             "residuals", "sd")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/olsrr/olsrr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/omd/omd.Rcheck/00install.out' for details.
fhcor: no visible global function definition for 'cor'
Undefined global functions or variables:
  cor
Consider adding
  importFrom("stats", "cor")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OmegaG/OmegaG.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OmicKriging/OmicKriging.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OmicNavigator/OmicNavigator.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OmicsPLS/OmicsPLS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/omics/omics.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/omicwas/omicwas.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Omisc/Omisc.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'base'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OmnibusFisher/OmnibusFisher.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/omopr/omopr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ompr/ompr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ompr.roi/ompr.roi.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/omsvg/omsvg.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'gt'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/omu/omu.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OnAge/OnAge.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onbabynames/onbabynames.Rcheck/00install.out' for details.
Note: found 842 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onbrand/onbrand.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onc.api/onc.api.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'crayon' 'testthat'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OncoBayes2/OncoBayes2.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oncomodel/oncomodel.Rcheck/00install.out' for details.
MLparameters: no visible global function definition for 'optim'
comp.freq: no visible global function definition for 'x11'
comp.freq: no visible global function definition for 'par'
Undefined global functions or variables:
  optim par x11
Consider adding
  importFrom("grDevices", "x11")
  importFrom("graphics", "par")
  importFrom("stats", "optim")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Oncotree/Oncotree.Rcheck/00install.out' for details.
generate.data: no visible global function definition for 'rbinom'
least.common.ancestor: no visible global function definition for
  'na.omit'
oncotree.fit : estimate.error.rates: no visible global function
  definition for 'optim'
plot.boottree: no visible global function definition for 'par'
plot.boottree: no visible global function definition for
  'dev.interactive'
plot.boottree: no visible global function definition for 'mtext'
plot.oncotree: no visible global function definition for 'par'
plot.oncotree: no visible global function definition for 'xinch'
plot.oncotree: no visible global function definition for 'yinch'
plot.oncotree: no visible global function definition for 'lines'
plot.oncotree: no visible global function definition for 'rect'
plot.oncotree: no visible global function definition for 'strwidth'
plot.oncotree: no visible global function definition for 'strheight'
plot.oncotree: no visible global function definition for 'text'
Undefined global functions or variables:
  dev.interactive lines mtext na.omit optim par rbinom rect strheight
  strwidth text xinch yinch
Consider adding
  importFrom("grDevices", "dev.interactive")
  importFrom("graphics", "lines", "mtext", "par", "rect", "strheight",
             "strwidth", "text", "xinch", "yinch")
  importFrom("stats", "na.omit", "optim", "rbinom")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'rlist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ondisc/ondisc.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oneclust/oneclust.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onehot/onehot.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onelogin/onelogin.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'R6' 'safer'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onemap/onemap.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onemapsgapi/onemapsgapi.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onepass/onepass.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OneR/OneR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OneStep/OneStep.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ONEST/ONEST.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OneTwoSamples/OneTwoSamples.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onewaytests/onewaytests.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onion/onion.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onlineBcp/onlineBcp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onlineCOV/onlineCOV.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onlineforecast/onlineforecast.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onlinePCA/onlinePCA.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onlineretail/onlineretail.Rcheck/00install.out' for details.
Note: found 32 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onlineVAR/onlineVAR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onls/onls.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onnx/onnx.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onpoint/onpoint.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/onsr/onsr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ontoFAST/ontoFAST.Rcheck/00install.out' for details.
Note: found 34 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ontologyIndex/ontologyIndex.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ontologyPlot/ontologyPlot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ontologySimilarity/ontologySimilarity.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OOBCurve/OOBCurve.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'randomForest' 'ranger'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Running examples in 'OOBCurve-Ex.R' failed
The error most likely occurred in:

> ### Name: OOBCurve
> ### Title: Out of Bag Learning curve
> ### Aliases: OOBCurve
> 
> ### ** Examples
> 
> 
> library(mlr)
> library(ranger)
> 
> # Classification
> data = getTaskData(sonar.task)
> sonar.task = makeClassifTask(data = data, target = "Class")
> lrn = makeLearner("classif.ranger", keep.inbag = TRUE, par.vals = list(num.trees = 100))
Error in loadNamespace(x) : there is no package called 'XML'
Calls: makeLearner ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OOI/OOI.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
  Warning: closing unused connection 3 (C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/patches_idx.rds)
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oolong/oolong.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'R6' 'dplyr' 'miniUI' 'text2vec'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OOmisc/OOmisc.Rcheck/00install.out' for details.
ci.prop: no visible global function definition for 'qf'
ci.prop: no visible global function definition for 'qnorm'
ePCP: no visible global function definition for 'qnorm'
sevennum: no visible global function definition for 'na.omit'
sevennum: no visible global function definition for 'quantile'
Undefined global functions or variables:
  na.omit qf qnorm quantile
Consider adding
  importFrom("stats", "na.omit", "qf", "qnorm", "quantile")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oompaBase/oompaBase.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oompaData/oompaData.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ooplah/ooplah.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OOR/OOR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OOS/OOS.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opalr/opalr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OpasnetUtils/OpasnetUtils.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opdisDownsampling/opdisDownsampling.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OPDOE/OPDOE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openadds/openadds.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openair/openair.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openblender/openblender.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opencage/opencage.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OpenCL/OpenCL.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'unix'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opencpu/opencpu.Rcheck/00install.out' for details.
Note: found 4 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openCR/openCR.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opencv/opencv.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opendatatoronto/opendatatoronto.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opendotaR/opendotaR.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'dplyr'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openEBGM/openEBGM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OpenImageR/OpenImageR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openintro/openintro.Rcheck/00install.out' for details.
Note: found 2521 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'tmap'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OpenLand/OpenLand.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openmetrics/openmetrics.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'R6'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OpenMPController/OpenMPController.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openMSE/openMSE.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OpenMx/OpenMx.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openNLPdata/openNLPdata.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'openNLPmodels.en'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openNLP/openNLP.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OpenRepGrid.ic/OpenRepGrid.ic.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'formattable' 'rintrojs' 'shinyBS' 'shinyFeedback' 'shinyWidgets'
  'shinycssloaders' 'shinydashboard' 'shinydashboardPlus' 'shinyjs'
  'shinythemes' 'splines' 'testthat' 'tidyverse'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openSkies/openSkies.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OpenSpecy/OpenSpecy.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openssl/openssl.Rcheck/00install.out' for details.
Package required but not available: 'rgrass7'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OpenStreetMap/OpenStreetMap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opentimsr/opentimsr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opentraj/opentraj.Rcheck/00install.out' for details.
Df2SpLinesDf: no visible global function definition for 'slot'
PlotTraj: no visible global function definition for 'par'
PlotTraj: no visible global function definition for 'grid'
PlotTraj: no visible global function definition for 'box'
PlotTrajFreq: no visible global function definition for 'par'
PlotTrajFreq: no visible global function definition for 'grid'
PlotTrajFreq: no visible global function definition for
  'colorRampPalette'
PlotTrajFreq: no visible global function definition for 'legend'
PlotTrajFreq: no visible binding for global variable 'title'
PlotTrajFreq: no visible global function definition for 'dev.off'
ReadFiles: no visible global function definition for 'read.table'
Undefined global functions or variables:
  box colorRampPalette dev.off grid legend par read.table slot title
Consider adding
  importFrom("grDevices", "colorRampPalette", "dev.off")
  importFrom("graphics", "box", "grid", "legend", "par", "title")
  importFrom("methods", "slot")
  importFrom("utils", "read.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opentripplanner/opentripplanner.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'tibble'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'nbc4va'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openVA/openVA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/openxlsx/openxlsx.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opera/opera.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/operators/operators.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/operator.tools/operator.tools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OPI/OPI.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opitools/opitools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Opportunistic/Opportunistic.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'gurobi'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oppr/oppr.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Opt5PL/Opt5PL.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optAUC/optAUC.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'MASS'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
nlsolve: no visible global function definition for 'optim'
nlsolve: no visible global function definition for 'runif'
optAUC: no visible global function definition for 'var'
Undefined global functions or variables:
  optim runif var
Consider adding
  importFrom("stats", "optim", "runif", "var")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optband/optband.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optbdmaeAT/optbdmaeAT.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optbin/optbin.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optBiomarker/optBiomarker.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OptCirClust/OptCirClust.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'annotate'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optCluster/optCluster.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optextras/optextras.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OptGS/OptGS.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OptHedging/OptHedging.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opticskxi/opticskxi.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opticut/opticut.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optifunset/optifunset.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optigrab/optigrab.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OptimalCutpoints/OptimalCutpoints.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package which this enhances but not available for checking: 'gurobi'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OptimalDesign/OptimalDesign.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optimall/optimall.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OptimalRerandExpDesigns/OptimalRerandExpDesigns.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optimalThreshold/optimalThreshold.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OptimalTiming/OptimalTiming.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OptimaRegion/OptimaRegion.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'geometry'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optimCheck/optimCheck.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optim.functions/optim.functions.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optimization/optimization.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optimLanduse/optimLanduse.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optimos.prime/optimos.prime.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optimParallel/optimParallel.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optimr/optimr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optimStrat/optimStrat.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optimus/optimus.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optimx/optimx.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OptInterim/OptInterim.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optinterv/optinterv.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optional/optional.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OptionPricing/OptionPricing.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optionstrat/optionstrat.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optiscale/optiscale.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optiSel/optiSel.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optiSolve/optiSolve.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'Matrix'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optmatch/optmatch.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OptM/OptM.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'boot' 'splines'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optparse/optparse.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optpart/optpart.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optrcdmaeAT/optrcdmaeAT.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optrees/optrees.Rcheck/00install.out' for details.
getMinimumArborescence: no visible global function definition for
  'capture.output'
getMinimumCutTree: no visible global function definition for
  'capture.output'
getMinimumCutTree: no visible global function definition for 'par'
getMinimumSpanningTree: no visible global function definition for
  'capture.output'
getShortestPathTree: no visible global function definition for
  'capture.output'
Undefined global functions or variables:
  capture.output par
Consider adding
  importFrom("graphics", "par")
  importFrom("utils", "capture.output")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optR/optR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OptSig/OptSig.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/optweight/optweight.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/opusminer/opusminer.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OpVaR/OpVaR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'ROracle'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orca/orca.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ORCI/ORCI.Rcheck/00install.out' for details.
Agrestiind.CI: no visible global function definition for 'qnorm'
BPexact.CI: no visible global function definition for 'uniroot'
BPmidp.CI: no visible global function definition for 'uniroot'
Cornfieldexact.CI: no visible global function definition for 'uniroot'
Cornfieldmidp.CI: no visible global function definition for 'uniroot'
Gart.CI: no visible global function definition for 'qnorm'
Invsinh.CI: no visible global function definition for 'qnorm'
Woolf.CI: no visible global function definition for 'qnorm'
Undefined global functions or variables:
  qnorm uniroot
Consider adding
  importFrom("stats", "qnorm", "uniroot")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orclus/orclus.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ORCME/ORCME.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Orcs/Orcs.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orcutt/orcutt.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordcrm/ordcrm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordDisp/ordDisp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ORdensity/ORdensity.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ORDER2PARENT/ORDER2PARENT.Rcheck/00install.out' for details.
'library' or 'require' calls to packages already attached by Depends:
  'Matrix' 'splines'
  Please remove these calls from your code.
bgmm : SplineGMM : moment.conditions: warning in matrix(nr = n.para, nc
  = J): partial argument match of 'nr' to 'nrow'
bgmm : SplineGMM : moment.conditions: warning in matrix(nr = n.para, nc
  = J): partial argument match of 'nc' to 'ncol'
bgmm: no visible global function definition for 'ecdf'
bgmm : SplineGMM: no visible global function definition for
  'constrOptim'
blr: no visible global function definition for 'ecdf'
blr: no visible global function definition for 'constrOptim'
blr: no visible global function definition for 'lm'
parentcdf : combinations: no visible global function definition for
  'combn'
parentcdf : solver: no visible global function definition for 'uniroot'
Undefined global functions or variables:
  combn constrOptim ecdf lm uniroot
Consider adding
  importFrom("stats", "constrOptim", "ecdf", "lm", "uniroot")
  importFrom("utils", "combn")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orderbook/orderbook.Rcheck/00install.out' for details.
'library' or 'require' call to 'methods' which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'grid' 'lattice' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordering/ordering.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orderly/orderly.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orders/orders.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orderstats/orderstats.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OrdFacReg/OrdFacReg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordiBreadth/ordiBreadth.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordinalClust/ordinalClust.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordinalCont/ordinalCont.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordinalForest/ordinalForest.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordinalgmifs/ordinalgmifs.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordinalLBM/ordinalLBM.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'reshape2'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OrdinalLogisticBiplot/OrdinalLogisticBiplot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordinalNet/ordinalNet.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordinalpattern/ordinalpattern.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordinal/ordinal.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordinalRR/ordinalRR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OrdMonReg/OrdMonReg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OrdNor/OrdNor.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ordPens/ordPens.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oreo/oreo.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'ggplot2' 'gridExtra' 'scales' 'tools'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ore/ore.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ores/ores.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orf/orf.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OrgMassSpecR/OrgMassSpecR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/org/org.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orgR/orgR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orgutils/orgutils.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ORIClust/ORIClust.Rcheck/00install.out' for details.
ORICC1: no visible binding for global variable 'sd'
ORICC1: no visible global function definition for 'write.table'
ORICC1: no visible global function definition for 'postscript'
ORICC1: no visible global function definition for 'jpeg'
ORICC1: no visible global function definition for 'points'
ORICC1: no visible global function definition for 'dev.off'
ORICC1: no visible global function definition for 'par'
ORICC2: no visible binding for global variable 'sd'
ORICC2: no visible global function definition for 'write.table'
ORICC2: no visible global function definition for 'postscript'
ORICC2: no visible global function definition for 'jpeg'
ORICC2: no visible global function definition for 'points'
ORICC2: no visible global function definition for 'dev.off'
ORICC2: no visible global function definition for 'par'
Undefined global functions or variables:
  dev.off jpeg par points postscript sd write.table
Consider adding
  importFrom("grDevices", "dev.off", "jpeg", "postscript")
  importFrom("graphics", "par", "points")
  importFrom("stats", "sd")
  importFrom("utils", "write.table")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orientlib/orientlib.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/origami/origami.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ORION/ORION.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orloca.es/orloca.es.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orloca/orloca.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'knitr' 'rmarkdown'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ormBigData/ormBigData.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ORMDR/ORMDR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ormPlot/ormPlot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oro.dicom/oro.dicom.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'XML'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oro.nifti/oro.nifti.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
  'LazyDataCompression' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oro.pet/oro.pet.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'grDevices'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orQA/orQA.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orsifronts/orsifronts.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orsk/orsk.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orthoDr/orthoDr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orthogonalsplinebasis/orthogonalsplinebasis.Rcheck/00install.out' for details.
plot.SplineBasis: no visible global function definition for 'matplot'
plot,SplineBasis-matrix: no visible global function definition for
  'matplot'
plot,SplineBasis-missing: no visible global function definition for
  'matplot'
Undefined global functions or variables:
  matplot
Consider adding
  importFrom("graphics", "matplot")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OrthoPanels/OrthoPanels.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/orthopolynom/orthopolynom.Rcheck/00install.out' for details.
'library' or 'require' call to 'polynom' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'polynom'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
chebyshev.c.polynomials: no visible global function definition for
  'polynomial'
chebyshev.s.polynomials: no visible global function definition for
  'polynomial'
chebyshev.t.polynomials: no visible global function definition for
  'polynomial'
chebyshev.u.polynomials: no visible global function definition for
  'polynomial'
gegenbauer.polynomials: no visible global function definition for
  'polynomial'
ghermite.h.polynomials: no visible global function definition for
  'polynomial'
glaguerre.polynomials: no visible global function definition for
  'polynomial'
hermite.h.polynomials: no visible global function definition for
  'polynomial'
hermite.he.polynomials: no visible global function definition for
  'polynomial'
jacobi.g.polynomials: no visible global function definition for
  'polynomial'
jacobi.p.polynomials: no visible global function definition for
  'polynomial'
legendre.polynomials: no visible global function definition for
  'polynomial'
monic.polynomials: no visible global function definition for
  'polynomial'
orthogonal.polynomials: no visible global function definition for
  'polynomial'
orthonormal.polynomials: no visible global function definition for
  'polynomial'
polynomial.derivatives: no visible global function definition for
  'deriv'
polynomial.integrals: no visible global function definition for
  'integral'
polynomial.values: no visible global function definition for 'predict'
schebyshev.t.polynomials: no visible global function definition for
  'polynomial'
schebyshev.u.polynomials: no visible global function definition for
  'polynomial'
slegendre.polynomials: no visible global function definition for
  'polynomial'
Undefined global functions or variables:
  deriv integral polynomial predict
Consider adding
  importFrom("stats", "deriv", "predict")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ORTSC/ORTSC.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oRus/oRus.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'knitr' 'tibble'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OscillatorGenerator/OscillatorGenerator.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/osc/osc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OSCV/OSCV.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/osDesign/osDesign.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/osd/osd.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OSDR/OSDR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/osfr/osfr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oshka/oshka.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oskeyring/oskeyring.Rcheck/00install.out' for details.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/osmdata/osmdata.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/osmextract/osmextract.Rcheck/00install.out' for details.
Note: found 263 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/osmgeosample/osmgeosample.Rcheck/00install.out' for details.
Package required but not available: 'rlist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/osmplotr/osmplotr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OSMscale/OSMscale.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OSNMTF/OSNMTF.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/osqp/osqp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/osrm/osrm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/osrmr/osrmr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Ostats/Ostats.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OTclust/OTclust.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OTE/OTE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'Rcplex'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/otinference/otinference.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/otp/otp.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'R6' 'openssl'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/otpr/otpr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ot/ot.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OTrecod/OTrecod.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/otrimle/otrimle.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OTRselect/OTRselect.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/otsad/otsad.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/otuSummary/otuSummary.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OTUtable/OTUtable.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/otvPlots/otvPlots.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'quantreg'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ouch/ouch.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/outbreaker2/outbreaker2.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/outbreaks/outbreaks.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/outcomerate/outcomerate.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/outForest/outForest.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OutlierDC/OutlierDC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OutlierDM/OutlierDM.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
odm: no visible binding for global variable 'sd'
odm : <anonymous>: no visible global function definition for 'sd'
odm : <anonymous>: no visible global function definition for 'quantile'
odm: no visible global function definition for 'prcomp'
quant.const: no visible global function definition for 'quantile'
quant.const.D: no visible global function definition for 'reshape'
quant.const.D: no visible global function definition for 'quantile'
quant.linear.D: no visible global function definition for 'reshape'
quant.nonlin : FrankModel: no visible global function definition for
  'qt'
quant.nonlin : FrankModel: no visible global function definition for
  'pt'
quant.nonlin: no visible global function definition for 'predict'
quant.nonlin.D: no visible global function definition for 'reshape'
quant.nonlin.D: no visible global function definition for 'predict'
quant.nonpar.D: no visible global function definition for 'reshape'
rgrubbs.test: no visible global function definition for 'sd'
plot,OutlierDM-missing: no visible binding for global variable 'pch'
summary,OutlierDM: no visible global function definition for 'head'
Undefined global functions or variables:
  head pch prcomp predict pt qt quantile reshape sd
Consider adding
  importFrom("stats", "prcomp", "predict", "pt", "qt", "quantile",
             "reshape", "sd")
  importFrom("utils", "head")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/outlierensembles/outlierensembles.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'rlist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/outliers/outliers.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/outliertree/outliertree.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OutrankingTools/OutrankingTools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/outreg/outreg.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/outsider.base/outsider.base.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/outsider/outsider.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OUwie/OUwie.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ouxy/ouxy.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/overdisp/overdisp.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/overlapping/overlapping.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/overlapptest/overlapptest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/overlap/overlap.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/overture/overture.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/overviewR/overviewR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OVtool/OVtool.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/owdbr/owdbr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/owd/owd.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OWEA/OWEA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OwenQ/OwenQ.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/owmr/owmr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Packages required but not available: 'geometa', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oxcAAR/oxcAAR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oxcgrt/oxcgrt.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/OxyBS/OxyBS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oysteR/oysteR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ozmaps/ozmaps.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/oz/oz.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/p2distance/p2distance.Rcheck/00install.out' for details.
loadCSVtoP2distance: no visible global function definition for
  'read.table'
p2distance : calcularDistancia: no visible binding for global variable
  'sd'
p2distance : ordenarVariables: no visible global function definition
  for 'cor'
p2distance : calculoFactoresPonderacion: no visible global function
  definition for 'lm'
p2distance: no visible global function definition for 'cor'
Undefined global functions or variables:
  cor lm read.table sd
Consider adding
  importFrom("stats", "cor", "lm", "sd")
  importFrom("utils", "read.table")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/p3state.msm/p3state.msm.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'survival' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
p3state: no visible global function definition for 'survfit'
p3state: no visible global function definition for 'terms'
p3state: no visible global function definition for 'as.formula'
p3state: no visible global function definition for 'coxph'
p3state: no visible binding for global variable 'na.exclude'
plot.p3state: no visible global function definition for 'matplot'
plot.p3state: no visible global function definition for 'devAskNewPage'
plot.p3state: no visible global function definition for 'persp'
plot.p3state: no visible global function definition for 'colours'
plot.p3state: no visible global function definition for
  'filled.contour'
Undefined global functions or variables:
  as.formula colours coxph devAskNewPage filled.contour matplot
  na.exclude persp survfit terms
Consider adding
  importFrom("grDevices", "colours", "devAskNewPage")
  importFrom("graphics", "filled.contour", "matplot", "persp")
  importFrom("stats", "as.formula", "na.exclude", "terms")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PabonLasso/PabonLasso.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pacbpred/pacbpred.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
pacbpred : thetaFunc: no visible global function definition for 'lsfit'
pacbpred : thetaFunc: no visible global function definition for 'rnorm'
pacbpred: no visible global function definition for 'var'
pacbpred: no visible global function definition for 'runif'
pacbpred: no visible global function definition for 'rnorm'
pacbpred: no visible global function definition for 'rbinom'
Undefined global functions or variables:
  lsfit rbinom rnorm runif var
Consider adding
  importFrom("stats", "lsfit", "rbinom", "rnorm", "runif", "var")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packageDiff/packageDiff.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packagefinder/packagefinder.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'rstudioapi'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packageRank/packageRank.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packager/packager.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packagetrackr/packagetrackr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packcircles/packcircles.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packClassic/packClassic.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packDAMipd/packDAMipd.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'flexsurv' 'nlme' 'tibble' 'tidyverse' 'tm'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packer/packer.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packHV/packHV.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packMBPLSDA/packMBPLSDA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packrat/packrat.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pack/pack.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/packS4/packS4.Rcheck/00install.out' for details.
[,ClassW: warning in switch(EXP = i, u1 = {: partial argument match of
  'EXP' to 'EXPR'
[,ClassW: warning in return(x@u1): partial argument match of 'EXP' to
  'EXPR'
[,ClassW: warning in }, u2 = {: partial argument match of 'EXP' to
  'EXPR'
[,ClassW: warning in return(x@u2): partial argument match of 'EXP' to
  'EXPR'
[,ClassW: warning in }, w1 = {: partial argument match of 'EXP' to
  'EXPR'
[,ClassW: warning in return(x@w1): partial argument match of 'EXP' to
  'EXPR'
[,ClassW: warning in }): partial argument match of 'EXP' to 'EXPR'
[<-,ClassW: warning in switch(EXP = i, u1 = {: partial argument match
  of 'EXP' to 'EXPR'
[<-,ClassW: warning in x@u1 <- value: partial argument match of 'EXP'
  to 'EXPR'
[<-,ClassW: warning in }, u2 = {: partial argument match of 'EXP' to
  'EXPR'
[<-,ClassW: warning in x@u2 <- value: partial argument match of 'EXP'
  to 'EXPR'
[<-,ClassW: warning in }, w1 = {: partial argument match of 'EXP' to
  'EXPR'
[<-,ClassW: warning in x@w1 <- value: partial argument match of 'EXP'
  to 'EXPR'
[<-,ClassW: warning in }): partial argument match of 'EXP' to 'EXPR'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PACLasso/PACLasso.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'XML'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pacman/pacman.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paco/paco.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'ape'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pacotest/pacotest.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PAC/PAC.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pacs/pacs.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pacviz/pacviz.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'e1071'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'genbankr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Pade/Pade.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/padr/padr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pafdR/pafdR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PAFit/PAFit.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paf/paf.Rcheck/00install.out' for details.
paf: no visible global function definition for 'as.formula'
paf: no visible global function definition for 'model.response'
paf: no visible global function definition for 'model.frame'
paf: no visible global function definition for 'model.matrix'
plot.paf: no visible global function definition for 'lines'
Undefined global functions or variables:
  as.formula lines model.frame model.matrix model.response
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "as.formula", "model.frame", "model.matrix",
             "model.response")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pafr/pafr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pagedown/pagedown.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pagemap/pagemap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pagenum/pagenum.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pageviews/pageviews.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PAGI/PAGI.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
CalGIF: no visible binding for global variable 'PAGIData'
CalGIF2: no visible binding for global variable 'PAGIData'
PAGI.Main: no visible binding for global variable 'PAGIData'
PAGI.Main: no visible global function definition for 'p.adjust'
PAGI.Main: no visible global function definition for 'pt'
getclass.labels: no visible binding for global variable 'ExampleData'
getdataset: no visible binding for global variable 'ExampleData'
Undefined global functions or variables:
  ExampleData PAGIData p.adjust pt
Consider adding
  importFrom("stats", "p.adjust", "pt")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pagoda2/pagoda2.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pagoo/pagoo.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PAGWAS/PAGWAS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/painter/painter.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paintmap/paintmap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pairedCI/pairedCI.Rcheck/00install.out' for details.
paired.Loc: no visible global function definition for 'qt'
paired.Loc: no visible global function definition for 'median'
paired.Loc: no visible global function definition for 'qsignrank'
paired.Loc: no visible global function definition for 'qnorm'
paired.Scale: no visible global function definition for 'var'
paired.Scale: no visible global function definition for 'cor'
paired.Scale: no visible global function definition for 'qt'
paired.Scale: no visible global function definition for 'median'
paired.Scale: no visible global function definition for 'qnorm'
Undefined global functions or variables:
  cor median qnorm qsignrank qt var
Consider adding
  importFrom("stats", "cor", "median", "qnorm", "qsignrank", "qt", "var")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PairedData/PairedData.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pairheatmap/pairheatmap.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'grid'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pairsD3/pairsD3.Rcheck/00install.out' for details.
pairsD3: no visible global function definition for 'gray.colors'
Undefined global functions or variables:
  gray.colors
Consider adding
  importFrom("grDevices", "gray.colors")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PairViz/PairViz.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pairwiseCI/pairwiseCI.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pairwiseComparisons/pairwiseComparisons.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pairwise/pairwise.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PakPC2017/PakPC2017.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'stats'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PakPMICS2014Ch/PakPMICS2014Ch.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'stats'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PakPMICS2014HH/PakPMICS2014HH.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'stats'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PakPMICS2014HL/PakPMICS2014HL.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'stats'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PakPMICS2014Wm/PakPMICS2014Wm.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'stats'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PakPMICS2018bh/PakPMICS2018bh.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PakPMICS2018fs/PakPMICS2018fs.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PakPMICS2018hh/PakPMICS2018hh.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PakPMICS2018mm/PakPMICS2018mm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PakPMICS2018mn/PakPMICS2018mn.Rcheck/00install.out' for details.
Note: found 4 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PakPMICS2018/PakPMICS2018.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pak/pak.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/palaeoSig/palaeoSig.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package which this enhances but not available for checking: 'CorShrink'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/palasso/palasso.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paleobioDB/paleobioDB.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paleofire/paleofire.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paleoMAS/paleoMAS.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' calls to packages already attached by Depends:
  'MASS' 'lattice' 'vegan'
  Please remove these calls from your code.
Note: found 1 marked UTF-8 string
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paleomorph/paleomorph.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paleopop/paleopop.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'trend'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paleotree/paleotree.Rcheck/00install.out' for details.
Note: found 9 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paleoTS/paleoTS.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'iterators'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paletteer/paletteer.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/palettesForR/palettesForR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/palettetown/palettetown.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/palinsol/palinsol.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/palmerpenguins/palmerpenguins.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/palm/palm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/palmtree/palmtree.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/palr/palr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pals/pals.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PAMA/PAMA.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PamBinaries/PamBinaries.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pamctdp/pamctdp.Rcheck/00install.out' for details.
Note: found 34 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PAmeasures/PAmeasures.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PAMhm/PAMhm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'plotKML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pamm/pamm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pammtools/pammtools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'PAMmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pampe/pampe.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pamr/pamr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pAnalysis/pAnalysis.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PanCanVarSel/PanCanVarSel.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'smoothmest'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PANDA/PANDA.Rcheck/00install.out' for details.
GOpredict: no visible global function definition for 'fisher.test'
KEGGpredict: no visible global function definition for 'fisher.test'
ProteinCluster: no visible global function definition for 'ecdf'
ProteinCluster: no visible global function definition for 'as.hclust'
ProteinCluster: no visible global function definition for
  'as.dendrogram'
ProteinCluster : addE: no visible global function definition for
  'is.leaf'
SignificantSubcluster: no visible global function definition for
  'order.dendrogram'
SignificantSubcluster: no visible global function definition for
  'fisher.test'
Undefined global functions or variables:
  as.dendrogram as.hclust ecdf fisher.test is.leaf order.dendrogram
Consider adding
  importFrom("stats", "as.dendrogram", "as.hclust", "ecdf",
             "fisher.test", "is.leaf", "order.dendrogram")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PandemicLP/PandemicLP.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pander/pander.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pandocfilters/pandocfilters.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/panelaggregation/panelaggregation.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/panelAR/panelAR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PanelCount/PanelCount.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Paneldata/Paneldata.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Paneldata.formula: no visible global function definition for
  'model.frame'
Paneldata.formula: no visible global function definition for
  'model.matrix'
Paneldata.formula: no visible global function definition for
  'model.response'
summary.Paneldata: no visible global function definition for 'coef'
summary.Paneldata: no visible global function definition for 'pt'
Undefined global functions or variables:
  coef model.frame model.matrix model.response pt
Consider adding
  importFrom("stats", "coef", "model.frame", "model.matrix",
             "model.response", "pt")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PanelMatch/PanelMatch.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/panelr/panelr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/panelvar/panelvar.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/panelView/panelView.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/panelWranglR/panelWranglR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pangaear/pangaear.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PanJen/PanJen.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pan/pan.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PantaRhei/PantaRhei.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'utils'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/papayar/papayar.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/papci/papci.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'DT'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paperplanes/paperplanes.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/papeR/papeR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parade/parade.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paradox/paradox.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parallelDist/parallelDist.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ParallelDSM/ParallelDSM.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'caret' 'geoR' 'gstat' 'pryr'
  All declared Imports should be used.
Note: found 5 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ParallelLogger/ParallelLogger.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parallelly/parallelly.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parallelMap/parallelMap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parallelMCMCcombine/parallelMCMCcombine.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parallelML/parallelML.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ParallelPC/ParallelPC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parallelPlot/parallelPlot.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
  Warning: closing unused connection 3 (C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/patches_idx.rds)
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ParallelTree/ParallelTree.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/param6/param6.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'EGAnet'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parameters/parameters.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paramGUI/paramGUI.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ParamHelpers/ParamHelpers.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paramhetero/paramhetero.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'survey'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paramlink2/paramlink2.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paramlink/paramlink.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/params/params.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paramtest/paramtest.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paran/paran.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ParBayesianOptimization/ParBayesianOptimization.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parboost/parboost.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parcats/parcats.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'magrittr' 'tibble'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pa/pa.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'grid'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
.formula.make: no visible global function definition for 'formula'
regress: no visible global function definition for 'lm'
regress: no visible global function definition for 'model.matrix'
Undefined global functions or variables:
  formula lm model.matrix
Consider adding
  importFrom("stats", "formula", "lm", "model.matrix")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parcoords/parcoords.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ParDNAcopy/ParDNAcopy.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ParetoPosStable/ParetoPosStable.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Pareto/Pareto.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parfm/parfm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parglm/parglm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parlitools/parlitools.Rcheck/00install.out' for details.
Note: found 16 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parma/parma.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parmigene/parmigene.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parmsurvfit/parmsurvfit.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'flexsurv'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paropt/paropt.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parqr/parqr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parsec/parsec.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parsedate/parsedate.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parsermd/parsermd.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parseRPDR/parseRPDR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parSim/parSim.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'parallel'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parsnip/parsnip.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PartCensReg/PartCensReg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partDSA/partDSA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partialAR/partialAR.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partialCI/partialCI.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Partiallyoverlapping/Partiallyoverlapping.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partialOR/partialOR.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'nnet'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
fitOR: no visible global function definition for 'multinom'
fitOR: no visible global function definition for 'formula'
fitOR: no visible global function definition for 'coef'
fitOR: no visible global function definition for 'optim'
reportOR: no visible global function definition for 'qnorm'
reportOR: no visible global function definition for 'pchisq'
reportOR: no visible global function definition for 'coef'
simData: no visible global function definition for 'rnorm'
simData: no visible global function definition for 'runif'
Undefined global functions or variables:
  coef formula multinom optim pchisq qnorm rnorm runif
Consider adding
  importFrom("stats", "coef", "formula", "optim", "pchisq", "qnorm",
             "rnorm", "runif")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/particles/particles.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/particle.swarm.optimisation/particle.swarm.optimisation.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partitionBEFsp/partitionBEFsp.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partitionComparison/partitionComparison.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partitionMap/partitionMap.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Namespace in Imports field not imported from: 'stats'
  All declared Imports should be used.
partitionMap: no visible global function definition for 'predict'
partitionMap: no visible global function definition for 'rnorm'
partitionMap: no visible binding for global variable 'sd'
partitionMap: no visible global function definition for 'sd'
partitionMap: no visible global function definition for 'quantile'
Undefined global functions or variables:
  predict quantile rnorm sd
Consider adding
  importFrom("stats", "predict", "quantile", "rnorm", "sd")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partitionMetric/partitionMetric.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partition/partition.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partitions/partitions.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partools/partools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partR2/partR2.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partsm/partsm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Packages suggested but not available for checking: 'XML', 'pmml'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/partykit/partykit.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/party/party.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parviol/parviol.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
parviol: no visible global function definition for 'plot.new'
parviol: no visible global function definition for 'plot.window'
parviol: no visible global function definition for 'title'
parviol: no visible global function definition for 'lines'
parviol: no visible global function definition for 'text'
parviol: no visible global function definition for 'rgb'
selecto: no visible global function definition for 'lines'
Undefined global functions or variables:
  lines plot.new plot.window rgb text title
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "lines", "plot.new", "plot.window", "text",
             "title")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/parzer/parzer.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pasadr/pasadr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PASenseWear/PASenseWear.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PAS/PAS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PASSED/PASSED.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pass.lme/pass.lme.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PAsso/PAsso.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/passport/passport.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/passt/passt.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/password/password.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pastecs/pastecs.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pastis/pastis.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'ape' 'caper'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
conch: no visible global function definition for 'read.tree'
conch: no visible global function definition for 'reorder'
conch: no visible global function definition for 'read.nexus'
conch: no visible global function definition for '.compressTipLabel'
conch: no visible global function definition for 'drop.tip'
conch: no visible global function definition for 'extract.clade'
conch: no visible global function definition for 'which.edge'
conch: no visible global function definition for 'write.tree'
pastis_main: no visible global function definition for 'combn'
read_input: no visible global function definition for 'read.tree'
read_input: no visible global function definition for 'reorder'
read_input: no visible global function definition for 'read.csv'
read_input: no visible global function definition for 'read.dna'
Undefined global functions or variables:
  .compressTipLabel combn drop.tip extract.clade read.csv read.dna
  read.nexus read.tree reorder which.edge write.tree
Consider adding
  importFrom("stats", "reorder")
  importFrom("utils", "combn", "read.csv")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PASWR2/PASWR2.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PASWR/PASWR.Rcheck/00install.out' for details.
'library' or 'require' calls to packages already attached by Depends:
  'MASS' 'e1071'
  Please remove these calls from your code.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/patchDVI/patchDVI.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/patchSynctex/patchSynctex.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/patchwork/patchwork.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/patentr/patentr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/patentsview/patentsview.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/path.chain/path.chain.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'logger'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pathdiagram/pathdiagram.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pathfindR.data/pathfindR.data.Rcheck/00install.out' for details.
Package unavailable to check Rd xrefs: 'pathfindR'
Note: found 1 marked UTF-8 string
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'KEGGgraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pathlibr/pathlibr.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'R6' 'glue' 'logging' 'purrr'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pathlit/pathlit.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'testthat' 'usethis' 'utils'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pathmapping/pathmapping.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pathmodelfit/pathmodelfit.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PathSelectMP/PathSelectMP.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paths/paths.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pathviewr/pathviewr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'GenomicFeatures'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/patientProfilesVis/patientProfilesVis.Rcheck/00install.out' for details.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(patientProfilesVis)
  > 
  > test_check("patientProfilesVis")
  Fontconfig error: Cannot load default config file
  ══ Skipped tests ═══════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════
  • On CRAN (20)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════
  ── Error (test_createSubjectProfileReport.R:34:2): report is created with custom file name ──
  Error: pdflatex is not available
  Backtrace:
       █
    1. ├─testthat::expect_silent(...) test_createSubjectProfileReport.R:34:8
    2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
    3. │   ├─testthat:::.capture(...)
    4. │   │ ├─withr::with_output_sink(...)
    5. │   │ │ └─base::force(code)
    6. │   │ ├─base::withCallingHandlers(...)
    7. │   │ └─base::withVisible(code)
    8. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. └─patientProfilesVis::createSubjectProfileReport(...)
   10.   └─patientProfilesVis:::subjectProfileExport(...)
   11.     └─tools::texi2pdf(file = texFile, clean = TRUE)
   12.       └─tools::texi2dvi(...)
  
  [ FAIL 1 | WARN 0 | SKIP 20 | PASS 365 ]
  Error: Test failures
  Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/patPRO/patPRO.Rcheck/00install.out' for details.
Checking should be performed on sources prepared by 'R CMD build'.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/patrick/patrick.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/patternator/patternator.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'graphics'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PatternClass/PatternClass.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/patternize/patternize.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/patternplot/patternplot.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'biomaRt'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Patterns/Patterns.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'KernSmooth' 'Mfuzz' 'SelectBoost' 'gplots' 'grid' 'jetset' 'magic'
  'msgps' 'splines' 'stats4' 'survival'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PAutilities/PAutilities.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pauwels2014/pauwels2014.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pavo/pavo.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pawacc/pawacc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.analytics/paws.analytics.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.application.integration/paws.application.integration.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.common/paws.common.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.compute/paws.compute.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.cost.management/paws.cost.management.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.customer.engagement/paws.customer.engagement.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.database/paws.database.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.developer.tools/paws.developer.tools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.end.user.computing/paws.end.user.computing.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.machine.learning/paws.machine.learning.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.management/paws.management.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.networking/paws.networking.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws/paws.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.security.identity/paws.security.identity.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/paws.storage/paws.storage.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbapply/pbapply.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbatR/pbatR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbbd/pbbd.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbdBASE/pbdBASE.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbdMPI/pbdMPI.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbdPROF/pbdPROF.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PBD/PBD.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'ade4'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbdRPC/pbdRPC.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbdSLAP/pbdSLAP.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbdZMQ/pbdZMQ.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PBIBD/PBIBD.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PBImisc/PBImisc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PBIR/PBIR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbivnorm/pbivnorm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbixr/pbixr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbkrtest/pbkrtest.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'knitr'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbmcapply/pbmcapply.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbm/pbm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PBNPA/PBNPA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbo/pbo.Rcheck/00install.out' for details.
'library' or 'require' call to 'foreach' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
dotplot.pbo: no visible global function definition for 'reorder'
pbo: no visible global function definition for '%dopar%'
pbo: no visible global function definition for 'foreach'
pbo: no visible global function definition for 'lm'
xyplot.pbo: no visible global function definition for 'ecdf'
xyplot.pbo: no visible global function definition for 'doubleYScale'
xyplot.pbo: no visible global function definition for 'reorder'
Undefined global functions or variables:
  %dopar% doubleYScale ecdf foreach lm reorder
Consider adding
  importFrom("stats", "ecdf", "lm", "reorder")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pBrackets/pBrackets.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PBRF/PBRF.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PBSadmb/PBSadmb.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PBSddesolve/PBSddesolve.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PBSmapping/PBSmapping.Rcheck/00install.out' for details.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbs/pbs.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pbv/pbv.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pca3d/pca3d.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCA4TS/PCA4TS.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcaBootPlot/pcaBootPlot.Rcheck/00install.out' for details.
draw.pcaBootPlot: no visible global function definition for 'grid'
draw.pcaBootPlot: no visible global function definition for 'points'
draw.pcaBootPlot: no visible global function definition for 'symbols'
draw.pcaBootPlot: no visible global function definition for 'legend'
pcaBootPlot: no visible global function definition for 'prcomp'
pcaBootPlot: no visible global function definition for 'cor'
pcaBootPlot: no visible global function definition for 'quantile'
pcaBootPlot: no visible global function definition for 'pdf'
pcaBootPlot: no visible global function definition for 'dev.off'
Undefined global functions or variables:
  cor dev.off grid legend pdf points prcomp quantile symbols
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("graphics", "grid", "legend", "points", "symbols")
  importFrom("stats", "cor", "prcomp", "quantile")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcadapt/pcadapt.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCADSC/PCADSC.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'Matrix' 'pander'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcaL1/pcaL1.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcalg/pcalg.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pCalibrate/pCalibrate.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcalls/pcalls.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcal/pcal.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCAmatchR/PCAmatchR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCAmixdata/PCAmixdata.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcaPP/pcaPP.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pccc/pccc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCDimension/PCDimension.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcdpca/pcdpca.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'fda'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcds/pcds.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcensmix/pcensmix.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcev/pcev.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcFactorStan/pcFactorStan.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCFAM/PCFAM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcgen/pcgen.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcg/pcg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCGSE/PCGSE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pchc/pchc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pch/pch.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCICt/PCICt.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcIRT/pcIRT.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcLasso/pcLasso.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCL/PCL.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcmabc/pcmabc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCMBaseCpp/PCMBaseCpp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCMBase/PCMBase.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCMRS/PCMRS.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcnetmeta/pcnetmeta.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pCODE/pCODE.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'base'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pco/pco.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCovR/PCovR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcoxtime/pcoxtime.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCPS/PCPS.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'RDML'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCRedux/PCRedux.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcr/pcr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcse/pcse.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCSinR/PCSinR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PCS/PCS.Rcheck/00install.out' for details.
PdofCSGt.bootstrap5: no visible global function definition for 'rnorm'
PdofCSGt.bootstrap5: no visible global function definition for 'rt'
PdofCSt.T1or2: no visible global function definition for 'combn'
PofCSGt: no visible global function definition for 'combn'
PofCSLt.bootstrap5: no visible global function definition for 'rnorm'
PofCSLt.bootstrap5: no visible global function definition for 'rt'
PofCSt: no visible global function definition for 'pnorm'
tindep: no visible binding for global variable 'var'
tindep: no visible global function definition for 'pt'
Undefined global functions or variables:
  combn pnorm pt rnorm rt var
Consider adding
  importFrom("stats", "pnorm", "pt", "rnorm", "rt", "var")
  importFrom("utils", "combn")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcsstools/pcsstools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcSteiner/pcSteiner.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'tmap'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pct/pct.Rcheck/00install.out' for details.
Note: found 11 marked UTF-8 strings
Running examples in 'pct-Ex.R' failed
The error most likely occurred in:

> ### Name: uptake_pct_govtarget
> ### Title: Calculate cycling uptake for UK 'Government Target' scenario
> ### Aliases: uptake_pct_govtarget uptake_pct_govtarget_2020
> ###   uptake_pct_godutch_2020 uptake_pct_ebike_2020
> ###   uptake_pct_govtarget_school2 uptake_pct_godutch_school2
> 
> ### ** Examples
> 
> distance = 15
> gradient = 2
> logit_pcycle = -3.959 + # alpha
+   (-0.5963 * distance) + # d1
+   (1.866 * sqrt(distance)) + # d2
+   (0.008050 * distance^2) + # d3
+   (-0.2710 * gradient) + # h1
+   (0.009394 * distance * gradient) + # i1
+   (-0.05135 * sqrt(distance) * gradient) # i2
> boot::inv.logit(logit_pcycle)
[1] 0.0107377
> uptake_pct_govtarget(15, 2)
[1] 0.0107377
> l = routes_fast_leeds
> pcycle_scenario = uptake_pct_govtarget(l$length, l$av_incline)
> pcycle_scenario_2020 = uptake_pct_govtarget_2020(l$length, l$av_incline)
> plot(l$length, pcycle_scenario, ylim = c(0, 0.2))
> points(l$length, pcycle_scenario_2020, col = "blue")
> 
> # compare with published PCT data:
> l_pct_2020 = get_pct_lines(region = "isle-of-wight")
Warning in CPL_read_ogr(dsn, layer, query, as.character(options), quiet,  :
  GDAL Error 1: SSL certificate problem: unable to get local issuer certificate
Error: Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/lsoa/isle-of-wight/l.geojson"; The file doesn't seem to exist.
Execution halted
Running 'skip-heavy.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(pct)
  > 
  > test_check("pct")
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-get-pct.R:11:3): get_pct_ works ─────────────────────────────────
  Error: Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/lsoa/isle-of-wight/z.geojson"; The file doesn't seem to exist.
  Backtrace:
      █
   1. └─pct::get_pct_zones("isle-of-wight") test-get-pct.R:11:2
   2.   └─pct::get_pct(...)
   3.     └─sf::read_sf(u_file)
   4.       ├─sf::st_read(...)
   5.       └─sf:::st_read.character(...)
   6.         └─sf:::CPL_read_ogr(...)
  
  [ FAIL 1 | WARN 1 | SKIP 1 | PASS 14 ]
  Error: Test failures
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'cycling-potential-uk.Rmd' using rmarkdown
--- finished re-building 'cycling-potential-uk.Rmd'

--- re-building 'km-cycled.Rmd' using rmarkdown
Quitting from lines 21-24 (km-cycled.Rmd) 
Error: processing vignette 'km-cycled.Rmd' failed with diagnostics:
there is no package called 'tmap'
--- failed re-building 'km-cycled.Rmd'

--- re-building 'pct-international.Rmd' using rmarkdown
--- finished re-building 'pct-international.Rmd'

--- re-building 'pct.Rmd' using rmarkdown
Linking to GEOS 3.9.1, GDAL 3.0.4, PROJ 7.2.1

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 115-117 (pct.Rmd) 
Error: processing vignette 'pct.Rmd' failed with diagnostics:
Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/msoa/isle-of-wight/c.geojson"; The file doesn't seem to exist.
--- failed re-building 'pct.Rmd'

--- re-building 'pct_training.Rmd' using rmarkdown
Quitting from lines 229-233 (pct_training.Rmd) 
Error: processing vignette 'pct_training.Rmd' failed with diagnostics:
there is no package called 'tmap'
--- failed re-building 'pct_training.Rmd'

--- re-building 'uk-cities.Rmd' using rmarkdown
Quitting from lines 30-34 (uk-cities.Rmd) 
Error: processing vignette 'uk-cities.Rmd' failed with diagnostics:
there is no package called 'tmap'
--- failed re-building 'uk-cities.Rmd'

SUMMARY: processing the following files failed:
  'km-cycled.Rmd' 'pct.Rmd' 'pct_training.Rmd' 'uk-cities.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pcts/pcts.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pda/pda.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdc/pdc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PDE/PDE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pder/pder.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdfCluster/pdfCluster.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PDFEstimator/PDFEstimator.Rcheck/00install.out' for details.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'PythonInR'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdfminer/pdfminer.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdfsearch/pdfsearch.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdftables/pdftables.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'tesseract'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdftools/pdftools.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdi/pdi.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdist/pdist.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdmod/pdmod.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PDM/PDM.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PDN/PDN.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'glmnet'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PdPDB/PdPDB.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdp/pdp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdqr/pdqr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PDQutils/PDQutils.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdR/pdR.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'car' 'sandwich'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pds3/pds3.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PDSCE/PDSCE.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PDShiny/PDShiny.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdSpecEst/pdSpecEst.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdxTrees/pdxTrees.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pdynmc/pdynmc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/peacesciencer/peacesciencer.Rcheck/00install.out' for details.
Note: found 243 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PEACH/PEACH.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Peacock.test/Peacock.test.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/peacots/peacots.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PeakError/PeakError.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/peakPick/peakPick.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/peakRAM/peakRAM.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PeakSegDisk/PeakSegDisk.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PeakSegDP/PeakSegDP.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PeakSegJoint/PeakSegJoint.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PeakSegOptimal/PeakSegOptimal.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pearson7/pearson7.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PearsonDS/PearsonDS.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PearsonICA/PearsonICA.Rcheck/00install.out' for details.
PearsonICA: no visible global function definition for 'rnorm'
PearsonICAdemo: no visible global function definition for 'rnorm'
PearsonICAdemo: no visible global function definition for 'dev.new'
PearsonICAdemo: no visible global function definition for 'par'
PearsonICAdemo: no visible global function definition for 'axis'
PearsonICAdemo: no visible global function definition for 'title'
PearsonICAdemo: no visible global function definition for 'lines'
Undefined global functions or variables:
  axis dev.new lines par rnorm title
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "axis", "lines", "par", "title")
  importFrom("stats", "rnorm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pec/pec.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pedbuildr/pedbuildr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PedCNV/PedCNV.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pedgene/pedgene.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pedigreemm/pedigreemm.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pedigree/pedigree.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pedigreeTools/pedigreeTools.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pedmut/pedmut.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pedometrics/pedometrics.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pedprobr/pedprobr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pedquant/pedquant.Rcheck/00install.out' for details.
Note: found 7240 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pedSimulate/pedSimulate.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pedsuite/pedsuite.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'dvir' 'ibdsim2' 'paramlink2' 'pedbuildr' 'segregatr'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pedtools/pedtools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/peermodels/peermodels.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PeerPerformance/PeerPerformance.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pegas/pegas.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PEGroupTesting/PEGroupTesting.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PEIP/PEIP.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PELVIS/PELVIS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PEMM/PEMM.Rcheck/00install.out' for details.
PEMM_fun : find.lambda: no visible global function definition for
  'optimize'
PEMM_fun: no visible global function definition for 'cov'
Undefined global functions or variables:
  cov optimize
Consider adding
  importFrom("stats", "cov", "optimize")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pems.utils/pems.utils.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/penalizedclr/penalizedclr.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'tidyverse'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/penalizedLDA/penalizedLDA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'globaltest'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/penalized/penalized.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/penalizedSVM/penalizedSVM.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'lhs'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/penaltyLearning/penaltyLearning.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pencal/pencal.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pencopulaCond/pencopulaCond.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PenCoxFrail/PenCoxFrail.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pendensity/pendensity.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/penDvine/penDvine.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/penfa/penfa.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PenIC/PenIC.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/penMSM/penMSM.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/penPHcure/penPHcure.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/penppml/penppml.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pense/pense.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pensim/pensim.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/peopleanalyticsdata/peopleanalyticsdata.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/peperr/peperr.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/peppm/peppm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pepr/pepr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PepSAVIms/PepSAVIms.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/peptider/peptider.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Peptides/Peptides.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pequod/pequod.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/perARMA/perARMA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/perccalc/perccalc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/perccal/perccal.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/percentiles/percentiles.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Perc/Perc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/perfectphyloR/perfectphyloR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PerFit/PerFit.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PerfMeas/PerfMeas.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PerformanceAnalytics/PerformanceAnalytics.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'DMwR'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/performanceEstimation/performanceEstimation.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/performance/performance.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'dendextendRcpp'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pergola/pergola.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/peRiodiCS/peRiodiCS.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'rms'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PeriodicTable/PeriodicTable.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/periscope/periscope.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PermAlgo/PermAlgo.Rcheck/00install.out' for details.
permalgorithm: no visible global function definition for 'is'
Undefined global functions or variables:
  is
Consider adding
  importFrom("methods", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PerMallows/PerMallows.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PERMANOVA/PERMANOVA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/permGS/permGS.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/permimp/permimp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/permPATH/permPATH.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/perm/perm.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
ksample.pclt: no visible global function definition for 'pchisq'
pCI: no visible global function definition for 'qbeta'
permKS.formula: no visible global function definition for 'terms'
permTREND.default: no visible global function definition for 'cor'
permTREND.formula: no visible global function definition for 'terms'
permTS.formula: no visible global function definition for 'terms'
trend.pclt: no visible global function definition for 'pnorm'
twosample.pclt: no visible global function definition for 'pnorm'
twosample.pclt: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  cor pchisq pnorm qbeta terms
Consider adding
  importFrom("stats", "cor", "pchisq", "pnorm", "qbeta", "terms")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/permubiome/permubiome.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/permuco/permuco.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/permutations/permutations.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/permute/permute.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/permutes/permutes.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/perry/perry.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/persiandictionary/persiandictionary.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Note: found 63777 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PersianStemmer/PersianStemmer.Rcheck/00install.out' for details.
Note: found 1 marked UTF-8 string
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PersomicsArray/PersomicsArray.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/personalized2part/personalized2part.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/personalized/personalized.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/personalr/personalr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'grImport'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/personr/personr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/perspectev/perspectev.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'rlist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/perturbR/perturbR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/peruse/peruse.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pesel/pesel.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PesticideLoadIndicator/PesticideLoadIndicator.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pestr/pestr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PetfindeR/PetfindeR.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'R6'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/petitr/petitr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/petrinetR/petrinetR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'RSelenium'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pexm/pexm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pez/pez.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pfa/pfa.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pfica/pfica.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pgam/pgam.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pgdraw/pgdraw.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pgee.mixed/pgee.mixed.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PGEE/PGEE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pgirmess/pgirmess.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pglm/pglm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PGM2/PGM2.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pGMGM/pGMGM.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pgmm/pgmm.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pgnorm/pgnorm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pGPx/pGPx.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pgraph/pgraph.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'XML'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PGRdup/PGRdup.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pgsc/pgsc.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pgTools/pgTools.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pguIMP/pguIMP.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'rJava' 'shinyWidgets' 'shinydashboard' 'shinyjs'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PH1XBAR/PH1XBAR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ph2bayes/ph2bayes.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ph2bye/ph2bye.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ph2mult/ph2mult.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/ph2rand/ph2rand.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PhageCocktail/PhageCocktail.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phangorn/phangorn.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pharmaRTF/pharmaRTF.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PharmPow/PharmPow.Rcheck/00install.out' for details.
PharmPow_crossover: no visible global function definition for
  'read.table'
PharmPow_crossover: no visible global function definition for
  'write.csv'
PharmPow_crossover: no visible global function definition for 'pdf'
PharmPow_crossover: no visible global function definition for 'dev.off'
PharmPow_parallel: no visible global function definition for
  'read.table'
PharmPow_parallel: no visible global function definition for
  'write.csv'
PharmPow_parallel: no visible global function definition for 'pdf'
PharmPow_parallel: no visible global function definition for 'dev.off'
fig_PharmPow_crossover: no visible global function definition for
  'read.csv'
fig_PharmPow_parallel: no visible global function definition for
  'read.csv'
Undefined global functions or variables:
  dev.off pdf read.csv read.table write.csv
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("utils", "read.csv", "read.table", "write.csv")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Phase123/Phase123.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Phase12Compare/Phase12Compare.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phase1PRMD/phase1PRMD.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phase1RMD/phase1RMD.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phase/phase.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phaseR/phaseR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phateR/phateR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
  Warning: closing unused connection 3 (C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/patches_idx.rds)
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phd/phd.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pheatmap/pheatmap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PheCAP/PheCAP.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PHEindicatormethods/PHEindicatormethods.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phenability/phenability.Rcheck/00install.out' for details.
fox: no visible binding for global variable 'sd'
fox: no visible global function definition for 'cor'
fox: no visible global function definition for 'interaction.plot'
fox: no visible global function definition for 'reorder'
kang: no visible global function definition for 'var'
kang: no visible binding for global variable 'sd'
kang: no visible global function definition for 'cor'
kang: no visible global function definition for 'interaction.plot'
kang: no visible global function definition for 'reorder'
nahu: no visible global function definition for 'interaction.plot'
nahu: no visible global function definition for 'reorder'
thsu: no visible global function definition for 'median'
thsu: no visible binding for global variable 'sd'
thsu: no visible global function definition for 'cor'
thsu: no visible global function definition for 'interaction.plot'
thsu: no visible global function definition for 'reorder'
Undefined global functions or variables:
  cor interaction.plot median reorder sd var
Consider adding
  importFrom("stats", "cor", "interaction.plot", "median", "reorder",
             "sd", "var")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phenesse/phenesse.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phenex/phenex.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PHENIX/PHENIX.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phenModel/phenModel.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phenmod/phenmod.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phenocamr/phenocamr.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'jsonlite' 'memoise'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phenoCDM/phenoCDM.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phenofit/phenofit.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phenology/phenology.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phenomap/phenomap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phenopix/phenopix.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pheno/pheno.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PheNorm/PheNorm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Phenotype/Phenotype.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PhenotypeSimulator/PhenotypeSimulator.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PHeval/PHeval.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PheVis/PheVis.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phia/phia.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phiDelta/phiDelta.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/philentropy/philentropy.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PHInfiniteEstimates/PHInfiniteEstimates.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PhitestR/PhitestR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phm/phm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phonenumber/phonenumber.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phonfieldwork/phonfieldwork.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phonics/phonics.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phonR/phonR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phonTools/phonTools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phosphoricons/phosphoricons.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/photobiologyFilters/photobiologyFilters.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/photobiologyInOut/photobiologyInOut.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/photobiologyLamps/photobiologyLamps.Rcheck/00install.out' for details.
Note: found 1 marked Latin-1 string
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/photobiologyLEDs/photobiologyLEDs.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/photobiologyPlants/photobiologyPlants.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/photobiology/photobiology.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/photobiologySensors/photobiologySensors.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/photobiologySun/photobiologySun.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/photobiologyWavebands/photobiologyWavebands.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PhotosynQ/PhotosynQ.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/photosynthesis/photosynthesis.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'future'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phreeqc/phreeqc.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PHSMM/PHSMM.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phuassess/phuassess.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PhViD/PhViD.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Phxnlme/Phxnlme.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phyclust/phyclust.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phyext2/phyext2.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phylin/phylin.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'RNeXML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phylocanvas/phylocanvas.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phyloclim/phyloclim.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phylocomr/phylocomr.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PhylogeneticEM/PhylogeneticEM.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phylogram/phylogram.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PHYLOGR/PHYLOGR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phyloland/phyloland.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phylolm/phylolm.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PhyloMeasures/PhyloMeasures.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phylometrics/phylometrics.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phylopath/phylopath.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phyloregion/phyloregion.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'rgdal'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phyloseqGraphTest/phyloseqGraphTest.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'intergraph'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phylosignal/phylosignal.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phylotate/phylotate.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phylotools/phylotools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phyloTop/phyloTop.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phyreg/phyreg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'INLA'
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phyr/phyr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PhysActBedRest/PhysActBedRest.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PhysicalActivity/PhysicalActivity.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/physiology/physiology.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PhySortR/PhySortR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phytools/phytools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/phytotools/phytotools.Rcheck/00install.out' for details.
incident: no visible global function definition for 'splinefun'
incident: no visible global function definition for 'integrate'
phytoprod: no visible global function definition for 'approx'
phytoprod: no visible global function definition for 'splinefun'
phytoprod: no visible global function definition for 'integrate'
reflectance: no visible global function definition for 'approx'
Undefined global functions or variables:
  approx integrate splinefun
Consider adding
  importFrom("stats", "approx", "integrate", "splinefun")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/picante/picante.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/picasso/picasso.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PICBayes/PICBayes.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pid/pid.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'FrF2.catlg128'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PieceExpIntensity/PieceExpIntensity.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/piecemaker/piecemaker.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'grImport2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/piecewiseSEM/piecewiseSEM.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/piggyback/piggyback.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PIGShift/PIGShift.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Pijavski/Pijavski.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pillar/pillar.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pimeta/pimeta.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pim/pim.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pinbasic/pinbasic.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pinfsc50/pinfsc50.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pingers/pingers.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pingr/pingr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pinnacle.API/pinnacle.API.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pinnacle.data/pinnacle.data.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pinochet/pinochet.Rcheck/00install.out' for details.
Note: found 2048 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pinp/pinp.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PINSPlus/PINSPlus.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pins/pins.Rcheck/00install.out' for details.
Note: found 36 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pinyin/pinyin.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pipe.design/pipe.design.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pipefittr/pipefittr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pipeGS/pipeGS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pipeliner/pipeliner.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pipenostics/pipenostics.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pipeR/pipeR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PIPS/PIPS.Rcheck/00install.out' for details.
plot.pred.int: no visible global function definition for 'plot.default'
plot.pred.int: no visible global function definition for 'axis'
plot.pred.int: no visible global function definition for 'box'
plot.pred.int : cidist: no visible global function definition for
  'ecdf'
plot.pred.int : negcidist: no visible global function definition for
  'ecdf'
plot.pred.int : pi.col.fun: no visible global function definition for
  'gray'
plot.pred.int: no visible global function definition for 'segments'
plot.pred.int: no visible global function definition for 'points'
plot.pred.int: no visible global function definition for 'abline'
pred.int: no visible binding for global variable 'sd'
prop.test.mult: no visible global function definition for 'qnorm'
sim.basic: no visible global function definition for 'rbinom'
sim.basic: no visible global function definition for 'rnorm'
t.test.mult: no visible global function definition for 'qt'
Undefined global functions or variables:
  abline axis box ecdf gray plot.default points qnorm qt rbinom rnorm
  sd segments
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "abline", "axis", "box", "plot.default",
             "points", "segments")
  importFrom("stats", "ecdf", "qnorm", "qt", "rbinom", "rnorm", "sd")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pirate/pirate.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/piratings/piratings.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'ggplot2'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/piRF/piRF.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pisaRT/pisaRT.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML2R'

Package suggested but not available for checking: 'ggsubplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/piton/piton.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pivmet/pivmet.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PivotalR/PivotalR.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pivotaltrackR/pivotaltrackR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pivottabler/pivottabler.Rcheck/00install.out' for details.
Running 'testthat-1.R'
Running the tests in 'tests/testthat-1.R' failed.
Complete output:
  > library(testthat)
  > library(pivottabler)
  > 
  > test_check("pivottabler", filter="A-")
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (test-A-07-calculationTests.R:639:5): calculation tests:  filter overrides - custom function 1: batch dplyr ──
  sum(pt$cells$asMatrix(), na.rm = TRUE) not equal to 39486.
  1/1 mismatches
  [1] 26324 - 39486 == -13162
  ── Failure (test-A-07-calculationTests.R:640:5): calculation tests:  filter overrides - custom function 1: batch dplyr ──
  as.character(pt$getHtml()) not identical to `html`.
  1/1 mismatches
  x[1]: "<table class=\"Table\">\n  <tr>\n    <th class=\"RowHeader\" rowspan=\"2\
  x[1]: " colspan=\"1\">&nbsp;</th>\n    <th class=\"ColumnHeader\" colspan=\"3\">
  x[1]: Express Passenger</th>\n    <th class=\"ColumnHeader\" colspan=\"3\">Ordin
  x[1]: ary Passenger</th>\n    <th class=\"ColumnHeader\" colspan=\"3\">Total</th
  x[1]: >\n  </tr>\n  <tr>\n    <th class=\"ColumnHeader\" colspan=\"1\">Curren...
  y[1]: "<table class=\"Table\">\n  <tr>\n    <th class=\"RowHeader\" rowspan=\"2\
  y[1]: " colspan=\"1\">&nbsp;</th>\n    <th class=\"ColumnHeader\" colspan=\"3\">
  y[1]: Express Passenger</th>\n    <th class=\"ColumnHeader\" colspan=\"3\">Ordin
  y[1]: ary Passenger</th>\n    <th class=\"ColumnHeader\" colspan=\"3\">Total</th
  y[1]: >\n  </tr>\n  <tr>\n    <th class=\"ColumnHeader\" colspan=\"1\">Curren...
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 94 ]
  Error: Test failures
  Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/piwikproR/piwikproR.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'urltools'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pixarfilms/pixarfilms.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pixelpuzzle/pixelpuzzle.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pixels/pixels.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pixiedust/pixiedust.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pixmap/pixmap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PKconverter/PKconverter.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkdata/pkdata.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgbuild/pkgbuild.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Running examples in 'pkgbuild-Ex.R' failed
The error most likely occurred in:

> ### Name: has_build_tools
> ### Title: Are build tools are available?
> ### Aliases: has_build_tools check_build_tools with_build_tools
> ###   local_build_tools
> 
> ### ** Examples
> 
> has_build_tools(debug = TRUE)
Scanning R CMD config CC...
cc_path:  
'' does not exist
Scanning path...
ls: C:\msys64\usr\bin\ls.exe 
gcc_path: C:\msys64\home\tomas\ucrt3\svn\ucrt3\R_PACK~1\X86_64~2.POS\bin\gcc.exe 
Scanning registry...
WARNING: Rtools is required to build R packages, but is not currently installed.

Please download and install Rtools 4.0 from https://cran.r-project.org/bin/windows/Rtools/.
Scanning R CMD config CC...
cc_path:  
'' does not exist
Scanning path...
ls: C:\msys64\usr\bin\ls.exe 
gcc_path: C:\msys64\home\tomas\ucrt3\svn\ucrt3\R_PACK~1\X86_64~2.POS\bin\gcc.exe 
Scanning registry...
WARNING: Rtools is required to build R packages, but is not currently installed.

Please download and install Rtools 4.0 from https://cran.r-project.org/bin/windows/Rtools/.
> check_build_tools()
WARNING: Rtools is required to build R packages, but is not currently installed.

Please download and install Rtools 4.0 from https://cran.r-project.org/bin/windows/Rtools/.
WARNING: Rtools is required to build R packages, but is not currently installed.

Please download and install Rtools 4.0 from https://cran.r-project.org/bin/windows/Rtools/.
Error: Could not find tools necessary to compile a package
Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.
Execution halted
Running 'build-tools.R'
Running the tests in 'tests/build-tools.R' failed.
Complete output:
  > library(pkgbuild)
  > 
  > check_build_tools(debug = TRUE)
  Scanning R CMD config CC...
  cc_path:  
  '' does not exist
  Scanning path...
  Scanning registry...
  WARNING: Rtools is required to build R packages, but is not currently installed.
  
  Please download and install Rtools 4.0 from https://cran.r-project.org/bin/windows/Rtools/.
  Scanning R CMD config CC...
  cc_path:  
  '' does not exist
  Scanning path...
  Scanning registry...
  WARNING: Rtools is required to build R packages, but is not currently installed.
  
  Please download and install Rtools 4.0 from https://cran.r-project.org/bin/windows/Rtools/.
  Error: Could not find tools necessary to compile a package
  Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.
  Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgcache/pkgcache.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgcond/pkgcond.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgconfig/pkgconfig.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgdepends/pkgdepends.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgdown/pkgdown.Rcheck/00install.out' for details.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(pkgdown)
  > 
  > test_check("pkgdown")
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (11)
  • dir_exists(path(pkg, ".github"))[[1]] is not TRUE (1)
  • dir_exists(path(test_path("assets/site-dot-github"), ".github"))[[1]] is not TRUE (1)
  • dir_exists(path)[[1]] is not TRUE (1)
  • file_exists("../../DESCRIPTION") is not TRUE (3)
  • is.null(rsconnect::accounts()) is TRUE (1)
  • rmarkdown::pandoc_available("1.12.3") is not TRUE (14)
  • rmarkdown::pandoc_available() is not TRUE (2)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-build-search-docs.R:9:3): docsearch.json and sitemap.xml are valid ──
  Error: Total path length must be less than PATH_MAX: 260
  Backtrace:
       █
    1. ├─testthat::expect_output(init_site(search)) test-build-search-docs.R:9:2
    2. │ └─testthat:::quasi_capture(...)
    3. │   ├─testthat:::.capture(...)
    4. │   │ └─testthat::capture_output_lines(code, print, width = width)
    5. │   │   └─testthat:::eval_with_output(code, print = print, width = width)
    6. │   │     ├─withr::with_output_sink(temp, withVisible(code))
    7. │   │     │ └─base::force(code)
    8. │   │     └─base::withVisible(code)
    9. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   10. └─pkgdown::init_site(search)
   11.   └─pkgdown:::build_docsearch_json(pkg)
   12.     └─pkgdown:::write_if_different(pkg, json, json_path, check = FALSE)
   13.       └─pkgdown:::path_abs(path, start = pkg$dst_path)
   14.         ├─fs::path_abs(path(start, path))
   15.         │ └─fs::path_norm(path(getwd(), start))
   16.         └─fs::path(start, path)
   17.           └─fs::path_tidy(...)
  
  [ FAIL 1 | WARN 0 | SKIP 34 | PASS 295 ]
  Error: Test failures
  Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgfilecache/pkgfilecache.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkggraph/pkggraph.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgKitten/pkgKitten.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkglite/pkglite.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgload/pkgload.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgmaker/pkgmaker.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgndep/pkgndep.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgnet/pkgnet.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgnews/pkgnews.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgsearch/pkgsearch.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkgverse/pkgverse.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PKI/PKI.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkmon/pkmon.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PKNCA/PKNCA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PKPDmodels/PKPDmodels.Rcheck/00install.out' for details.
PKmod: no visible global function definition for 'deriv'
Undefined global functions or variables:
  deriv
Consider adding
  importFrom("stats", "deriv")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PK/PK.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PKreport/PKreport.Rcheck/00install.out' for details.
PKadjust: no visible binding for global variable 'jpeg'
PKadjust: no visible binding for global variable 'bmp'
PKadjust: no visible binding for global variable 'png'
PKadjust: no visible binding for global variable 'tiff'
PKadjust: no visible binding for global variable 'dev.new'
PKadjust: no visible global function definition for 'dev.off'
PKfigure: no visible global function definition for 'dev.cur'
PKfigure: no visible global function definition for 'dev.off'
PKoutput: no visible global function definition for 'heatmap'
PKoutput: no visible global function definition for
  'packageDescription'
PKshow: no visible global function definition for 'browseURL'
addList1: no visible global function definition for 'formula'
addList1.old: no visible global function definition for 'formula'
addList2: no visible global function definition for 'formula'
generate.plot: no visible global function definition for 'dev.off'
writeHTML: no visible global function definition for
  'packageDescription'
writeLst: no visible global function definition for
  'packageDescription'
writeLst.tab: no visible global function definition for
  'packageDescription'
writeTable: no visible global function definition for
  'packageDescription'
writeTable: no visible global function definition for 'quantile'
initialize,nonmem: no visible global function definition for
  'read.table'
Undefined global functions or variables:
  bmp browseURL dev.cur dev.new dev.off formula heatmap jpeg
  packageDescription png quantile read.table tiff
Consider adding
  importFrom("grDevices", "bmp", "dev.cur", "dev.new", "dev.off", "jpeg",
             "png", "tiff")
  importFrom("stats", "formula", "heatmap", "quantile")
  importFrom("utils", "browseURL", "packageDescription", "read.table")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pkr/pkr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pKSEA/pKSEA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pksensi/pksensi.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pks/pks.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PL94171/PL94171.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/placer/placer.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/places/places.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PlackettLuce/PlackettLuce.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plac/plac.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plainview/plainview.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/planar/planar.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PlaneGeometry/PlaneGeometry.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Planesmuestra/Planesmuestra.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PlanetNICFI/PlanetNICFI.Rcheck/00install.out' for details.
Running examples in 'PlanetNICFI-Ex.R' failed
The error most likely occurred in:

> ### Name: proj_info_extract
> ### Title: Extract the Projection from a (virtual) raster file
> ### Aliases: proj_info_extract
> 
> ### ** Examples
> 
> 
> require(PlanetNICFI)
> 
> pth_vrt = system.file('data_files/virt_rast.vrt', package = "PlanetNICFI")
> 
> proj_info = proj_info_extract(path_to_raster = pth_vrt)
Warning in gdal_setInstallation(ignore.full_scan = ignore.full_scan, verbose = verbose) :
  No GDAL installation found. Please install 'gdal' before continuing:
	- www.gdal.org (no HDF4 support!)
	- trac.osgeo.org/osgeo4w/ (with HDF4 support RECOMMENDED)
	- www.fwtools.maptools.org (with HDF4 support)

Warning in gdal_setInstallation(ignore.full_scan = ignore.full_scan, verbose = verbose) :
  If you think GDAL is installed, please run:
gdal_setInstallation(ignore.full_scan=FALSE)
Error in proj_info_extract(path_to_raster = pth_vrt) : 
  trying to get slot "projargs" from an object of a basic class ("NULL") with no slots
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(PlanetNICFI)
  > 
  > test_check("PlanetNICFI")
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-planet_nicfi.R:30:3): the 'proj_info_extract()' function is of type character and it starts with the term '+proj' ──
  Error: trying to get slot "projargs" from an object of a basic class ("NULL") with no slots
  Backtrace:
      █
   1. └─PlanetNICFI::proj_info_extract(path_to_raster = pth_vrt) test-planet_nicfi.R:30:2
  
  [ FAIL 1 | WARN 3 | SKIP 0 | PASS 1 ]
  Error: Test failures
  Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/planets/planets.Rcheck/00install.out' for details.
Note: found 150 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plan/plan.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plantecophys/plantecophys.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plantecowrap/plantecowrap.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plaqr/plaqr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PlasmaMutationDetector/PlasmaMutationDetector.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Plasmidprofiler/Plasmidprofiler.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Plasmode/Plasmode.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'MASS' 'Matrix' 'RColorBrewer' 'arm' 'epiDisplay' 'foreign' 'gbm'
  'grid' 'lattice' 'latticeExtra' 'lme4' 'nnet' 'parallel' 'splines'
  'survey' 'twang' 'xtable'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plater/plater.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/platetools/platetools.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/platowork/platowork.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PlayerRatings/PlayerRatings.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plde/plde.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pleio/pleio.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pleiotest/pleiotest.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pleLMA/pleLMA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PLFD/PLFD.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plfMA/plfMA.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plfm/plfm.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plgp/plgp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pliman/pliman.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plinkFile/plinkFile.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plinkQC/plinkQC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plink/plink.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PLIS/PLIS.Rcheck/00install.out' for details.
bwfw.hmm: no visible global function definition for 'dnorm'
bwfw1.hmm: no visible global function definition for 'dnorm'
Undefined global functions or variables:
  dnorm
Consider adding
  importFrom("stats", "dnorm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PLmixed/PLmixed.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PLMIX/PLMIX.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plmm/plmm.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'Formula' 'sm'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plm/plm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PLNmodels/PLNmodels.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pln/pln.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plogr/plogr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Running examples in 'plogr-Ex.R' failed
The error most likely occurred in:

> ### Name: plogr-package
> ### Title: plogr: The 'plog' C++ Logging Library
> ### Aliases: plogr plogr-package
> 
> ### ** Examples
> 
> plogr_demo <- Rcpp::cppFunction(depends = "plogr", '
+ // C++ code begin
+ #include <plogr.h>
+ 
+ RObject plogr_demo() {
+   plog::init_r(plog::info);
+   LOG_INFO << "shown";
+   LOG_DEBUG << "not shown";
+   plog::init_r("DEBUG");
+   LOG_DEBUG << "shown now";
+   return R_NilValue;
+ }
+ 
+ #include <Rcpp.h> // not necessary to use plogr
+ // C++ code end
+ '
+ )
Warning message:
In system(cmd) : 'make' not found

Error in sourceCpp(code = code, env = env, rebuild = rebuild, cacheDir = cacheDir,  : 
  Error 1 occurred building shared library.
Calls: <Anonymous> -> sourceCpp

WARNING: The tools required to build C++ code for R were not found.

Please download and install the appropriate version of Rtools:

http://cran.r-project.org/bin/windows/Rtools/

Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PLordprob/PLordprob.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plot3D/plot3D.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plot3Drgl/plot3Drgl.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plot3logit/plot3logit.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotbb/plotbb.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PlotContour/PlotContour.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotdap/plotdap.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotfunctions/plotfunctions.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotGMM/plotGMM.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plothelper/plothelper.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Packages required but not available: 'XML', 'landmap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotluck/plotluck.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'hexbin' 'quantreg'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotlyGeoAssets/plotlyGeoAssets.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotly/plotly.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plot.matrix/plot.matrix.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotMCMC/plotMCMC.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotMElm/plotMElm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotmm/plotmm.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'dplyr' 'patchwork'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotmo/plotmo.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotpc/plotpc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PlotPrjNetworks/PlotPrjNetworks.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PlotRegionHighlighter/PlotRegionHighlighter.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
generateEnvelope: no visible global function definition for 'tail'
Undefined global functions or variables:
  tail
Consider adding
  importFrom("utils", "tail")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotrix/plotrix.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'gridSVG'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotrr/plotrr.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'dplyr' 'stats'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotscale/plotscale.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'graphics'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotSEMM/plotSEMM.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plotwidgets/plotwidgets.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plpoisson/plpoisson.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plRasch/plRasch.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
llla.bi: no visible global function definition for 'as.formula'
llla.bi: no visible global function definition for 'glm'
llla.bi: no visible global function definition for 'binomial'
llla.bi: no visible binding for global variable 'logit'
llla.bi: no visible global function definition for 'vcov'
llla.bi: no visible global function definition for 'coef'
llla.mc: no visible global function definition for 'model.matrix'
llla.mc: no visible global function definition for 'as.formula'
llla.mc: no visible global function definition for 'coxph'
llla.mc: no visible global function definition for 'vcov'
llla.mc: no visible global function definition for 'coef'
llla.mle: no visible global function definition for 'as.formula'
llla.mle: no visible global function definition for 'glm'
llla.mle: no visible global function definition for 'poisson'
llla.mle: no visible global function definition for 'coef'
llla.mle: no visible global function definition for 'vcov'
mclgen: no visible global function definition for 'reshape'
simRasch.1D: no visible global function definition for 'rnorm'
simRasch.1D: no visible global function definition for 'runif'
vcov.sandwich.glm: no visible global function definition for
  'model.matrix'
vcov.sandwich.glm: no visible global function definition for 'weights'
vcov.sandwich.glm: no visible global function definition for
  'residuals'
vcov.sandwich.glm: no visible global function definition for 'vcov'
Undefined global functions or variables:
  as.formula binomial coef coxph glm logit model.matrix poisson reshape
  residuals rnorm runif vcov weights
Consider adding
  importFrom("stats", "as.formula", "binomial", "coef", "glm",
             "model.matrix", "poisson", "reshape", "residuals", "rnorm",
             "runif", "vcov", "weights")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PLRModels/PLRModels.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'plspm'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plsdepot/plsdepot.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plsdof/plsdof.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plsgenomics/plsgenomics.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plsmod/plsmod.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plsmselect/plsmselect.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plsRbeta/plsRbeta.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pls/pls.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plsRcox/plsRcox.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plsRglm/plsRglm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plsr/plsr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plsVarSel/plsVarSel.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pltesim/pltesim.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plugdensity/plugdensity.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plumberDeploy/plumberDeploy.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'ssh'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plumber/plumber.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plumbertableau/plumbertableau.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'glue'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plumbr/plumbr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pluralize/pluralize.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plu/plu.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pluscode/pluscode.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plus/plus.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plusser/plusser.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/plyr/plyr.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pm4py/pm4py.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PMA/PMA.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmcgd/pmcgd.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
.MCM: no visible global function definition for 'runif'
.MCM: no visible global function definition for 'rmultinom'
.MCM: no visible global function definition for 'mahalanobis'
.MCM: no visible global function definition for 'optimize'
.MCM : f: no visible global function definition for 'mahalanobis'
.MCM: no visible global function definition for 'alarm'
.igpark: no visible global function definition for 'kmeans'
.loglik: no visible global function definition for 'mahalanobis'
.plot.gpcm: no visible global function definition for 'lines'
.plot.gpcm: no visible global function definition for 'legend'
.rwgpar: no visible global function definition for 'rexp'
.weights: no visible global function definition for 'mahalanobis'
Undefined global functions or variables:
  alarm kmeans legend lines mahalanobis optimize rexp rmultinom runif
Consider adding
  importFrom("graphics", "legend", "lines")
  importFrom("stats", "kmeans", "mahalanobis", "optimize", "rexp",
             "rmultinom", "runif")
  importFrom("utils", "alarm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmclust/pmclust.Rcheck/00install.out' for details.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PMCMRplus/PMCMRplus.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PMCMR/PMCMR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmc/pmc.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmdplyr/pmdplyr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmd/pmd.Rcheck/00install.out' for details.
Note: found 62 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmetar/pmetar.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmhtutorial/pmhtutorial.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmlbr/pmlbr.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmledecon/pmledecon.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'XML'

Package suggested but not available for checking: 'rattle'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'pmml'
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmmlTransformations/pmmlTransformations.Rcheck/00install.out' for details.
Package unavailable to check Rd xrefs: 'pmml'
Running examples in 'pmmlTransformations-Ex.R' failed
The error most likely occurred in:

> ### Name: DiscretizeXform
> ### Title: Discretizes a continuous variable to a discrete one as indicated
> ###   by interval mappings. This is in accordance to the PMML element:
> ###   *Discretize*
> ### Aliases: DiscretizeXform
> ### Keywords: manip
> 
> ### ** Examples
> 
> # Load the pmmlTransformations package
>     library(pmmlTransformations)
>     library(pmml)
Error in library(pmml) : there is no package called 'pmml'
Execution halted
Error(s) in re-building vignettes:
--- re-building 'FunctionXform.Rmd' using rmarkdown
Quitting from lines 31-34 (FunctionXform.Rmd) 
Error: processing vignette 'FunctionXform.Rmd' failed with diagnostics:
there is no package called 'pmml'
--- failed re-building 'FunctionXform.Rmd'

SUMMARY: processing the following file failed:
  'FunctionXform.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmpp/pmpp.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmr/pmr.Rcheck/00install.out' for details.
dbm: no visible global function definition for 'optim'
dbm: no visible global function definition for 'new'
destat: no visible global function definition for 'weighted.mean'
local.knn: no visible global function definition for 'sd'
local.knn: no visible global function definition for 'optim'
mdpref: no visible global function definition for 'sd'
mdpref: no visible global function definition for 'text'
mdpref: no visible global function definition for 'lines'
phicom: no visible global function definition for 'optim'
phicom: no visible global function definition for 'new'
pl: no visible global function definition for 'optim'
pl: no visible global function definition for 'new'
rol: no visible global function definition for 'nlm'
rol: no visible global function definition for 'new'
wdbm: no visible global function definition for 'optim'
wdbm: no visible global function definition for 'new'
Undefined global functions or variables:
  lines new nlm optim sd text weighted.mean
Consider adding
  importFrom("graphics", "lines", "text")
  importFrom("methods", "new")
  importFrom("stats", "nlm", "optim", "sd", "weighted.mean")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmsampsize/pmsampsize.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmultinom/pmultinom.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmwg/pmwg.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PMwR/PMwR.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pmxTools/pmxTools.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'ggrepel' 'gridExtra'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PNADcIBGE/PNADcIBGE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/png/png.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pnmtrem/pnmtrem.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'MASS'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
pnmtrem1: no visible global function definition for 'pnorm'
pnmtrem1: no visible global function definition for 'dnorm'
pnmtrem1: no visible global function definition for 'ginv'
pnmtrem1 : fun: no visible global function definition for 'pnorm'
pnmtrem1 : derf: no visible global function definition for 'dnorm'
pnmtrem1 : derf: no visible global function definition for 'pnorm'
pnmtrem1 : fun: no visible global function definition for 'dnorm'
Undefined global functions or variables:
  dnorm ginv pnorm
Consider adding
  importFrom("stats", "dnorm", "pnorm")
to your NAMESPACE file.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pnn/pnn.Rcheck/00install.out' for details.
'library' or 'require' call to 'rgenoud' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
smooth: no visible global function definition for 'genoud'
Undefined global functions or variables:
  genoud
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PNSIBGE/PNSIBGE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PNWColors/PNWColors.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PoA/PoA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pocketapi/pocketapi.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'dplyr'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/POCRE/POCRE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pocrm/pocrm.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/POD/POD.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/podr/podr.Rcheck/00install.out' for details.
Namespace in Imports field not imported from: 'plogr'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/poems/poems.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'abc' 'doParallel' 'gdistance' 'geosphere' 'lhs' 'metRology' 'raster'
  'trend'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PO.EN/PO.EN.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/POET/POET.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/POFIBGE/POFIBGE.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pogit/pogit.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PogromcyDanych/PogromcyDanych.Rcheck/00install.out' for details.
Note: found 7256 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/poibin/poibin.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PoiClaClu/PoiClaClu.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/poilog/poilog.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pointblank/pointblank.Rcheck/00install.out' for details.
Note: found 1 marked UTF-8 string
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pointdensityP/pointdensityP.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PointFore/PointFore.Rcheck/00install.out' for details.
Namespaces in Imports field not imported from:
  'car' 'lubridate'
  All declared Imports should be used.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/POINT/POINT.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pointRes/pointRes.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/pointr/pointr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/poio/poio.Rcheck/00install.out' for details.
Note: found 8 marked UTF-8 strings
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PoisBinNonNor/PoisBinNonNor.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/poisbinom/poisbinom.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PoisBinOrdNonNor/PoisBinOrdNonNor.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PoisBinOrdNor/PoisBinOrdNor.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/PoisBinOrd/PoisBinOrd.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/poisDoubleSamp/poisDoubleSamp.Rcheck/00install.out' for details.
Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/poisFErobust/poisFErobust.Rcheck/00install.out' for details.