Running 'testthat.R' [36s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > Sys.setenv("R_TESTS" = "")
  > library(testthat)
  > #Need to execute the following for manual checking
  > #Sys.setenv(NOT_CRAN = "true")
  > #setwd("~/Analyses/R/asremlPlus/tests/")
  > #test_check("asremlPlus", filter = "3Wheat")
  > #test_check("asremlPlus", filter = "4Wheat")
  > #test_check("asremlPlus", filter = "3")
  > test_check("asremlPlus", filter = "4")
  Loading required package: asremlPlus
  ASReml-R needs to be loaded if the mixed-model functions are to be used.
  
  ASReml-R is available from VSNi. Please visit http://www.vsni.co.uk/ for more information.
  
  #### Test for changeTerms using wheat example with asreml4
  #### Test estimateV for chick pea example with asreml4
  #### Test estimateV for Wheat example with asreml4
  #### Test estimateV specials for Cane with asreml4
  #### Test estimateV specials for HEB25 with asreml4
  #### Test estimateV at, fa, rr functions for MET data with asreml4
  #### Test estimateV str, spl & dev for orange with asreml4
  #### Test for predictions.frame on Oats with asreml4
  #### Test for Intercept prediction on Oats with asreml4
  #### Test for predictPlus.asreml4
  #### Test for plotPredictions.asreml4
  #### Test for predictPresent.asreml4
  #### Test for error when no predictions.asreml4
  #### Test for plotPvalues.asreml4
  #### Test for plotPvalues.asreml4
  #### Test for factor combinations asreml4
  #### Test for recalcLSD.alldiffs4
  #### Test for LSDby4
  #### Test for REMLRT with asreml4
  #### Test for wheat76 example with asreml4
  #### Test for IC with wheat94 using asreml4
  #### Test for getFormulae with wheat94 using asreml4
  #### Test for chooseModel.data.frame with asreml4
  #### Test for chooseModel.asrtests with asreml4
  #### Test for testing at terms with asreml4
  #### Test for testing MET at terms with asreml4
  #### Test for at terms in testswapran with asreml4
  #### Test for spline testing with asreml4
  #### Test for reparamSigDevn.asrtests with asreml4
  #### Test for changeModelOnIC with wheat94 using asreml4
  #### Test for changeModelOnIC example using asreml4
  #### Test for parallel processing with asreml4
  #### Test for simulate.asreml with asreml4
  #### Test for sort.alldiffs on Smarthouse with asreml4
  #### Test for sort.predictions.frame on WaterRunoff with asreml4
  #### Test for sort.alldiffs on Oats with asreml4
  #### Test for sort in standard order for classify on Oats with asreml4
  #### Test variofaces using Atieno with asreml4
  #### Test for wheat76 example with asreml4
  #### Test for allDifferences.data.frame sort.alldiffs on Oats with asreml4
  #### Test for LSDs and halfLSIs on system data with asreml4
  #### Test for LSD on Oats with asreml4
  #### Test for sort.alldiffs on Smarthouse with asreml4
  #### Test for LSD with sort.alldiffs on Smarthouse with asreml4
  #### Test for LSDsupplied on Oats with asreml4
  #### Test for LSD on WaterRunoff with asreml4
  #### Test for exploreLSDs on WaterRunoff with asreml4
  #### Test for exploreLSDs on Oats with asreml4
  #### Test for sort.alldiffs on WaterRunoff with asreml4
  #### Test for sort.alldiffs on Oats with asreml4
  #### Test for subset.alldiffs on Smarthouse with asreml4
  #### Test for facCombine.alldiffs on Ladybird with asreml4
  #### Test for facRecast.alldiffs on Ladybird with asreml4
  #### Test for linear.transformation on Oats with asreml4
  #### Test for linear.transformation on WaterRunoff with asreml4
  #### Test for addBacktransforms on WaterRunoff with asreml4
  #### Test for ratioTansforms on system data with asreml4
  #### Test for ratioTansforms on the Oats data with asreml4
  #### Test for predictions.frame on Oats with lme4
  #### Test for LSD.frame on Oats with lme4
  #### Test for allDifferences.data.frame on Oats with lme4
  #### Test for alldiffs validity on Oats with lme4
  #### Test for linTransform on WaterRunoff with lme4
  
  Table of information (partially) aliased with previous sources derived from the same formula
  
   Source  df Alias   aefficiency eefficiency order
   Species 1  unknown      0.1667      0.1667     1
  
  
  #### Predictions for  transform(s) transform(s) from Sources:Species
  
  The original predictions, obtained as described below, have
  been linearly transformed. 
  The original predictions, obtained as described below, have
  been linearly transformed to form estimated marginal means. 
       Combination predicted.value standard.error upper.Confidence.limit
  1 S. iqscjbogxah     -0.04097328     0.07296427              0.1028683
  2 S. oymwjrcnepv     -0.26708439     0.07296427             -0.1232428
  3 S. ocphawvtlgi     -0.30086748     0.07347407             -0.1560209
  4 S. hbpgtylxqku     -0.39587830     0.07338042             -0.2512163
  5 S. orcxszbujml     -0.42885687     0.07309091             -0.2847656
  6 S. xeqackngdrt     -0.49632334     0.11711989             -0.2654334
  7 S. tkujbvipoyr     -0.55659120     0.11715667             -0.3256288
    lower.Confidence.limit est.status
  1             -0.1848149  Estimable
  2             -0.4109260  Estimable
  3             -0.4457141  Estimable
  4             -0.5405403  Estimable
  5             -0.5729481  Estimable
  6             -0.7272132  Estimable
  7             -0.7875536  Estimable
  
  
  LSD values 
  
  minimum LSD =  0.1252489 
  
  mean LSD =  0.1868838 
  
  maximum LSD =  0.2751421 
  
  (sed range / mean sed =  0.802 )
  
  #### Test for alldiffs functions on WaterRunoff with lme4
  #### Test for exploreLSD on WaterRunoff with lme4
  #### Test for sort.alldiffs on Smarthouse with lme4
  #### Test for sort.alldiffs on WateRunoff with lme4
  #### Test for facCombine.alldiffs on Ladybird with lme4
  #### Test for as.predictions.frame on Ladybird with lme4
  #### Test for addBacktransforms on WaterRunoff with lme4
  #### Test for boot using wheat example with asreml4
  == Skipped tests ===============================================================
  * On CRAN (1)
  * asreml cannot be loaded (59)
  
  == Failed tests ================================================================
  -- Failure (test4alldiffslme.r:338:5): alldiffs_lme4 ---------------------------
  `... <- NULL` did not produce any warnings.
  
  [ FAIL 1 | WARN 0 | SKIP 60 | PASS 128 ]
  Error: Test failures
  Execution halted