Error(s) in re-building vignettes:
  ...
Terminated
Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘multivariate_irregular.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


 *** caught segfault ***
address 200, cause 'memory not mapped'
--- re-building ‘univariate_gridded.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 88-101 (univariate_gridded.Rmd) 
Timing stopped at: 0.017 0.004 0.021
Timing stopped at: 1.007 0.011 1.123
Error: processing vignette 'univariate_gridded.Rmd' failed with diagnostics:
Col::subvec(): indices out of bounds or incorrectly used
--- failed re-building ‘univariate_gridded.Rmd’

Segmentation Fault - core dumped
--- re-building ‘univariate_irregular.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


 *** caught segfault ***
address 0, cause 'memory not mapped'

Traceback:
 1: mcmc_run(y, family_id, x, coords, k, parents, children, block_names,     block_groups, indexing_grid, indexing_obs, set_unif_bounds,     beta_Vi, sigmasq_ab, tausq_ab, matern_fix_twonu, start_w,     start_lambda, lambda_mask, start_theta, start_beta, start_tausq,     mcmc_mh_sd, mcmc_keep, mcmc_burn, mcmc_thin, mcmc_startfrom,     n_threads, mcmc_adaptive, use_cache, use_forced_grid, use_ps,     mcmc_verbose, mcmc_debug, mcmc_print_every, sample_beta,     sample_tausq, sample_lambda, sample_theta, sample_w)
 2: system.time({    results <- mcmc_run(y, family_id, x, coords, k, parents,         children, block_names, block_groups, indexing_grid, indexing_obs,         set_unif_bounds, beta_Vi, sigmasq_ab, tausq_ab, matern_fix_twonu,         start_w, start_lambda, lambda_mask, start_theta, start_beta,         start_tausq, mcmc_mh_sd, mcmc_keep, mcmc_burn, mcmc_thin,         mcmc_startfrom, n_threads, mcmc_adaptive, use_cache,         use_forced_grid, use_ps, mcmc_verbose, mcmc_debug, mcmc_print_every,         sample_beta, sample_tausq, sample_lambda, sample_theta,         sample_w)})
 3: spmeshed(y, X, coords, block_size = 25, n_samples = mcmc_keep,     n_burn = mcmc_burn, n_thin = mcmc_thin, n_threads = 4, verbose = 0,     settings = list(forced_grid = FALSE, cache = FALSE), prior = list(phi = c(1,         30)))
 4: system.time({    meshout1 <- spmeshed(y, X, coords, block_size = 25, n_samples = mcmc_keep,         n_burn = mcmc_burn, n_thin = mcmc_thin, n_threads = 4,         verbose = 0, settings = list(forced_grid = FALSE, cache = FALSE),         prior = list(phi = c(1, 30)))})
 5: eval(expr, envir, enclos)
 6: eval(expr, envir, enclos)
 7: withVisible(eval(expr, envir, enclos))
 8: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler,     error = eHandler, message = mHandler)
 9: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir,     enclos)), warning = wHandler, error = eHandler, message = mHandler))
10: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr,     envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
11: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,     debug = debug, last = i == length(out), use_try = stop_on_error !=         2L, keep_warning = keep_warning, keep_message = keep_message,     output_handler = output_handler, include_timing = include_timing)
12: evaluate::evaluate(...)
13: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning),     keep_message = !isFALSE(options$message), stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options))
14: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE,     keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message),     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options)))
15: eng_r(options)
16: block_exec(params)
17: call_block(x)
18: process_group.block(group)
19: process_group(group)
20: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) {        setwd(wd)        cat(res, sep = "\n", file = output %n% "")        message("Quitting from lines ", paste(current_lines(i),             collapse = "-"), " (", knit_concord$get("infile"),             ") ")    })
21: process_file(text, output)
22: knit(input, text = text, envir = envir, quiet = quiet)
23: (if (grepl("\\.[Rr]md$", file)) knit2html else if (grepl("\\.[Rr]rst$",     file)) knit2pandoc else knit)(file, encoding = encoding,     quiet = quiet, envir = globalenv(), ...)
24: vweave(...)
25: engine$weave(file, quiet = quiet, encoding = enc)
26: doTryCatch(return(expr), name, parentenv, handler)
27: tryCatchOne(expr, names, parentenv, handlers[[1L]])
28: tryCatchList(expr, classes, parentenv, handlers)
29: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }}, error = function(e) {    OK <<- FALSE    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
30: tools:::.buildOneVignette("univariate_irregular.Rmd", "/home/ripley/R/packages/tests32/meshed.Rcheck/vign_test/meshed",     TRUE, FALSE, "univariate_irregular", "UTF-8", "/tmp/Rtmp1HayCu/working_dir/RtmpFTaa1e/file9a839565a.rds")
An irrecoverable exception occurred. R is aborting now ...
Terminated
Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘univariate_irregular_poisson.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


 *** caught segfault ***
address c0, cause 'memory not mapped'
SUMMARY: processing the following files failed:
  ‘multivariate_irregular.Rmd’ ‘univariate_gridded.Rmd’
  ‘univariate_irregular.Rmd’ ‘univariate_irregular_poisson.Rmd’

Error: Vignette re-building failed.
Execution halted