Error(s) in re-building vignettes:
--- re-building 'fftw.Rnw' using knitr
--- finished re-building 'fftw.Rnw'

--- re-building 'multivariate.Rnw' using knitr
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/Taper plot" -> "figure/Taper_plot"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/taper specification" -> "figure/taper_specification"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/taper specification" -> "figure/taper_specification"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/taper specification2" -> "figure/taper_specification2"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/taper specification2" -> "figure/taper_specification2"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/transfer gain plot" -> "figure/transfer_gain_plot"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/transfer gain plot" -> "figure/transfer_gain_plot"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/transfer phase plot" -> "figure/transfer_phase_plot"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/transfer phase plot" -> "figure/transfer_phase_plot"
--- finished re-building 'multivariate.Rnw'

--- re-building 'normalization.Rnw' using knitr
--- finished re-building 'normalization.Rnw'

--- re-building 'psd_overview.Rnw' using knitr
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/Load RSEIS package" -> "figure/Load_RSEIS_package"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/AR prewhiten" -> "figure/AR_prewhiten"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/Sampling rate versus interval" -> "figure/Sampling_rate_versus_interval"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/Compute PSD with mtapspec" -> "figure/Compute_PSD_with_mtapspec"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/Structure of mtapspec-psd" -> "figure/Structure_of_mtapspec-psd"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/Comparative spectra: mtapspec vs pspectrum" -> "figure/Comparative_spectra:_mtapspec_vs_pspectrum"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/Interpolate results" -> "figure/Interpolate_results"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figure/Summarize regression statistics" -> "figure/Summarize_regression_statistics"
Quitting from lines 438-441 (psd_overview.Rnw) 
Error: processing vignette 'psd_overview.Rnw' failed with diagnostics:
there is no package called 'ggplot2'
--- failed re-building 'psd_overview.Rnw'

C:/msys64/home/tomas/ucrt3/svn/ucrt3/R_PACK~1/rinst/bin/Rscript -e "if (getRversion() < '3.0.0') knitr::knit2pdf('fftw.Rnw') else tools::texi2pdf('fftw.tex')"
texify: C:\jenkins\workspace\miktex\windows\build\source\Libraries\MiKTeX\Core\Utils\Utils.cpp:490: internal error

Warning message:
In system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 5
C:/msys64/home/tomas/ucrt3/svn/ucrt3/R_PACK~1/rinst/bin/Rscript -e "if (getRversion() < '3.0.0') knitr::knit2pdf('normalization.Rnw') else tools::texi2pdf('normalization.tex')"
texify: C:\jenkins\workspace\miktex\windows\build\source\Libraries\MiKTeX\Core\Utils\Utils.cpp:490: internal error

Warning message:
In system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 5
C:/msys64/home/tomas/ucrt3/svn/ucrt3/R_PACK~1/rinst/bin/Rscript -e "if (getRversion() < '3.0.0') knitr::knit2pdf('psd_overview.Rnw') else tools::texi2pdf('psd_overview.tex')"
texify: C:\jenkins\workspace\miktex\windows\build\source\Libraries\MiKTeX\Core\Utils\Utils.cpp:490: internal error

Error: running 'texi2dvi' on 'psd_overview.tex' failed

LaTeX errors:
figure/Load_library.tex:1: LaTeX Error: Environment knitrout undefined.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
figure/Load_library.tex:2: LaTeX Error: Undefined color `fgcolor'.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
figure/Load_library.tex:2: LaTeX Error: Environment kframe undefined.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
figure/Load_library.tex:3: LaTeX Error: Environment alltt undefined.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
figure/Load_library.tex:5: LaTeX Error: \begin{document} ended b
In addition: Warning messages:
1: In system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 5
2: In system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "psd_overview.tex" ' had status 1
Execution halted
make: *** [Makefile:16: psd_overview.pdf] Error 1
Error in tools:::buildVignettes(dir = "C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/psd/psd.Rcheck/vign_test/psd") : 
  running 'make' failed
Execution halted