Error(s) in re-building vignettes:
--- re-building 'eQTL_outline.Rmd' using rmarkdown
--- finished re-building 'eQTL_outline.Rmd'

--- re-building 'flash_mash.Rmd' using rmarkdown
--- finished re-building 'flash_mash.Rmd'

--- re-building 'intro_correlations.Rmd' using rmarkdown
--- finished re-building 'intro_correlations.Rmd'

--- re-building 'intro_mash.Rmd' using rmarkdown
--- finished re-building 'intro_mash.Rmd'

--- re-building 'intro_mash_dd.Rmd' using rmarkdown
--- finished re-building 'intro_mash_dd.Rmd'

--- re-building 'intro_mashbaselinemean.Rmd' using rmarkdown
Quitting from lines 19-21 (intro_mashbaselinemean.Rmd) 
Error: processing vignette 'intro_mashbaselinemean.Rmd' failed with diagnostics:
there is no package called 'kableExtra'
--- failed re-building 'intro_mashbaselinemean.Rmd'

--- re-building 'intro_mashcommonbaseline.Rmd' using rmarkdown
--- finished re-building 'intro_mashcommonbaseline.Rmd'

--- re-building 'mash_sampling.Rmd' using rmarkdown
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "cl.lim" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "cl.lim" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "cl.lim" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "cl.lim" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "cl.lim" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "cl.lim" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "cl.lim" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "cl.lim" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "cl.lim" is not a graphical parameter
--- finished re-building 'mash_sampling.Rmd'

--- re-building 'simulate_noncanon.Rmd' using rmarkdown
--- finished re-building 'simulate_noncanon.Rmd'

SUMMARY: processing the following file failed:
  'intro_mashbaselinemean.Rmd'

Error: Vignette re-building failed.
Execution halted