Running examples in ‘mice-Ex.R’ failed
The error most likely occurred in:

> ### Name: D1
> ### Title: Compare two nested models using D1-statistic
> ### Aliases: D1
> 
> ### ** Examples
> 
> # Compare two linear models:
> imp <- mice(nhanes2, seed = 51009, print = FALSE)
> mi1 <- with(data = imp, expr = lm(bmi ~ age + hyp + chl))
> mi0 <- with(data = imp, expr = lm(bmi ~ age + hyp))
> D1(mi1, mi0)
Package mitml needed. Install from CRAN? (Yes/no/cancel) 
Installing package into ‘/tmp/RtmpkQaaHG/RLIBS_4108b707183’
(as ‘lib’ is unspecified)
also installing the dependencies ‘bit’, ‘prettyunits’, ‘bit64’, ‘progress’, ‘ucminf’, ‘numDeriv’, ‘clipr’, ‘vroom’, ‘tzdb’, ‘ordinal’, ‘forcats’, ‘hms’, ‘readr’, ‘jomo’, ‘haven’

trying URL 'https://cloud.r-project.org/src/contrib/bit_4.0.4.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/prettyunits_1.1.1.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/bit64_4.0.5.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/progress_1.2.2.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/clipr_0.7.1.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/vroom_1.5.3.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/tzdb_0.1.2.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/ordinal_2019.12-10.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/forcats_0.5.1.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/hms_1.1.0.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/haven_2.4.2.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/mitml_0.4-1.tar.gz'
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* installing *source* package ‘bit’ ...
** package ‘bit’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c attrutil.c -o attrutil.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c bit.c -o bit.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c chunkutil.c -o chunkutil.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c clone.c -o clone.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c init.c -o init.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c integerutil.c -o integerutil.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c merge.c -o merge.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c rle.c -o rle.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c sort.c -o sort.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o bit.so attrutil.o bit.o chunkutil.o clone.o init.o integerutil.o merge.o rle.o sort.o
installing to /tmp/RtmpkQaaHG/RLIBS_4108b707183/00LOCK-bit/00new/bit/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bit)
* installing *source* package ‘prettyunits’ ...
** package ‘prettyunits’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (prettyunits)
* installing *source* package ‘ucminf’ ...
** package ‘ucminf’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/f95  -PIC  -O -libmil -xtarget=native -xcache=generic -nofstore  -c fortran.f -o fortran.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c interface.c -o interface.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o ucminf.so fortran.o interface.o -L/home/ripley/R/cc/lib -lRlapack -L/home/ripley/R/cc/lib -lRblas -R/home/ripley/developerstudio12.6/lib -lfsu /home/ripley/developerstudio12.6/lib/compilers/libsunquad.a -lsunmath -lmtsk -lm -R/home/ripley/developerstudio12.6/lib -lfsu /home/ripley/developerstudio12.6/lib/compilers/libsunquad.a -lsunmath -lmtsk -lm -lfsu /home/ripley/developerstudio12.6/lib/libfui.so.2
installing to /tmp/RtmpkQaaHG/RLIBS_4108b707183/00LOCK-ucminf/00new/ucminf/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ucminf)
* installing *source* package ‘numDeriv’ ...
** package ‘numDeriv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (numDeriv)
* installing *source* package ‘clipr’ ...
** package ‘clipr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clipr)
* installing *source* package ‘tzdb’ ...
** package ‘tzdb’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG  -I'/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include' -I/usr/local/include -I../inst/include  -DINSTALL=dummy  -DAUTO_DOWNLOAD=0  -DHAS_REMOTE_API=0  -DUSE_OS_TZDB=0  -DONLY_C_LOCALE=1 -KPIC  -O -xlibmil -xtarget=native -xcache=generic -nofstore  -c api.cpp -o api.o
"api.cpp", line 53: Warning: attribute cpp11::init is unsupported and will be skipped.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 75: Warning: Deducing non-void lambda return type 'SEXPREC*' from lambda without a single return statement.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 158:     Where: While instantiating "void cpp11::unwind_protect<cpp11::detail::closure<extern "C" void()>, void>(cpp11::detail::closure<extern "C" void()>&&)".
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 158:     Where: Instantiated from void cpp11::protect::function<extern "C" void()>::operator()<>() const.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 195:     Where: Instantiated from non-template code.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 38: Warning: res hides cpp11::unwind_protect<cpp11::unwind_protect<cpp11::detail::closure<extern "C" void()>, void>::{lambda at protect.hpp,75:24}, void>::{lambda at protect.hpp,37:23}::res.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 37:     Where: While instantiating "cpp11::unwind_protect<cpp11::unwind_protect<cpp11::detail::closure<extern "C" void()>, void>::{lambda at protect.hpp,75:24}, void>::{lambda at protect.hpp,37:23}::operator()() const".
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 37:     Where: Instantiated from SEXPREC* cpp11::unwind_protect<cpp11::unwind_protect<cpp11::detail::closure<extern "C" void()>, void>::{lambda at protect.hpp,75:24}, void>(cpp11::unwind_protect<cpp11::detail::closure<extern "C" void()>, void>::{lambda at protect.hpp,75:24}&&).
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 75:     Where: Instantiated from void cpp11::unwind_protect<cpp11::detail::closure<extern "C" void()>, void>(cpp11::detail::closure<extern "C" void()>&&).
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 158:     Where: Instantiated from void cpp11::protect::function<extern "C" void()>::operator()<>() const.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 195:     Where: Instantiated from non-template code.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 37: Warning: Deducing non-void lambda return type 'SEXPREC*' from lambda without a single return statement.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 75:     Where: While instantiating "SEXPREC* cpp11::unwind_protect<cpp11::unwind_protect<cpp11::detail::closure<extern "C" void()>, void>::{lambda at protect.hpp,75:24}, void>(cpp11::unwind_protect<cpp11::detail::closure<extern "C" void()>, void>::{lambda at protect.hpp,75:24}&&)".
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 75:     Where: Instantiated from void cpp11::unwind_protect<cpp11::detail::closure<extern "C" void()>, void>(cpp11::detail::closure<extern "C" void()>&&).
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 158:     Where: Instantiated from void cpp11::protect::function<extern "C" void()>::operator()<>() const.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/protect.hpp", line 195:     Where: Instantiated from non-template code.
4 Warning(s) detected.
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG  -I'/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include' -I/usr/local/include -I../inst/include  -DINSTALL=dummy  -DAUTO_DOWNLOAD=0  -DHAS_REMOTE_API=0  -DUSE_OS_TZDB=0  -DONLY_C_LOCALE=1 -KPIC  -O -xlibmil -xtarget=native -xcache=generic -nofstore  -c cpp11.cpp -o cpp11.o
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 86: Error: enable_if_constructible_from_sexp<T, T> cpp11::as_cpp<T>(SEXPREC*) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 91: Error: enable_if_constructible_from_sexp<T, T> cpp11::as_cpp<T>(SEXPREC*) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 118: Error: enable_if_constructible_from_sexp<T, T> cpp11::as_cpp<T>(SEXPREC*) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 132: Error: enable_if_constructible_from_sexp<T, T> cpp11::as_cpp<T>(SEXPREC*) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 172: Error: enable_if_constructible_from_sexp<T, T> cpp11::as_cpp<T>(SEXPREC*) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 183: Error: enable_if_constructible_from_sexp<T, T> cpp11::as_cpp<T>(SEXPREC*) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 195: Error: enable_if_constructible_from_sexp<T, T> cpp11::as_cpp<T>(SEXPREC*) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 216: Error: enable_if_integral<T, SEXPREC*> cpp11::as_sexp<T>(T) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 221: Error: enable_if_integral<T, SEXPREC*> cpp11::as_sexp<T>(T) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 268: Error: enable_if_integral<T, SEXPREC*> cpp11::as_sexp<Container, T, struct>(const Container&) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 281: Error: Could not find a match for cpp11::as_sexp<T>(std::initializer_list<bool>) needed in cpp11::as_sexp(std::initializer_list<bool>).
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 317: Error: enable_if_integral<T, SEXPREC*> cpp11::as_sexp<Container, T, struct>(const Container&) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/as.hpp", line 331: Error: enable_if_c_string<T, SEXPREC*> cpp11::as_sexp<Container, T>(const Container&) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/r_string.hpp", line 75: Error: enable_if_integral<T, SEXPREC*> cpp11::as_sexp<T>(T) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/r_vector.hpp", line 190: Error: The name cpp11::r_vector<SEXPREC*>::data_ is unusable except in a non-static member function.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/r_vector.hpp", line 193: Error: The name cpp11::r_vector<SEXPREC*>::data_p_ is unusable except in a non-static member function.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/r_vector.hpp", line 192: Error: The name cpp11::r_vector<SEXPREC*>::is_altrep_ is unusable except in a non-static member function.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/r_vector.hpp", line 194: Error: The name cpp11::r_vector<SEXPREC*>::length_ is unusable except in a non-static member function.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/r_vector.hpp", line 190: Error: The name cpp11::r_vector<double>::data_ is unusable except in a non-static member function.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/r_vector.hpp", line 193: Error: The name cpp11::r_vector<double>::data_p_ is unusable except in a non-static member function.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/r_vector.hpp", line 192: Error: The name cpp11::r_vector<double>::is_altrep_ is unusable except in a non-static member function.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/r_vector.hpp", line 194: Error: The name cpp11::r_vector<double>::length_ is unusable except in a non-static member function.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/r_bool.hpp", line 63: Error: enable_if_integral<T, SEXPREC*> cpp11::as_sexp<T>(T) already had a body defined.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/r_vector.hpp", line 190: Error: The name cpp11::r_vector<int>::data_ is unusable except in a non-static member function.
"/tmp/RtmpkQaaHG/RLIBS_4108b707183/cpp11/include/cpp11/r_vector.hpp", line 193: Error: The name cpp11::r_vector<int>::data_p_ is unusable except in a non-static member function.
Compilation aborted, too many Error messages.
*** Error code 2
make: Fatal error: Command failed for target `cpp11.o'
Current working directory /tmp/RtmpkQaaHG/working_dir/RtmpI_a4nB/R.INSTALL366f451842c3/tzdb/src
ERROR: compilation failed for package ‘tzdb’
* removing ‘/tmp/RtmpkQaaHG/RLIBS_4108b707183/tzdb’
Warning in install.packages(pkg, repos = "https://cloud.r-project.org/",  :
  installation of package ‘tzdb’ had non-zero exit status
* installing *source* package ‘forcats’ ...
** package ‘forcats’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (forcats)
* installing *source* package ‘hms’ ...
** package ‘hms’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hms)
* installing *source* package ‘bit64’ ...
** package ‘bit64’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c bsearch.c -o bsearch.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c cache.c -o cache.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c hash64.c -o hash64.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c init.c -o init.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c integer64.c -o integer64.o
"integer64.c", line 270: warning:  attribute "no_sanitize" is unknown, ignored
"integer64.c", line 285: warning:  attribute "no_sanitize" is unknown, ignored
"integer64.c", line 300: warning:  attribute "no_sanitize" is unknown, ignored
"integer64.c", line 347: warning:  attribute "no_sanitize" is unknown, ignored
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c sort64.c -o sort64.o
"sort64.c", line 455: Warning: Likely out-of-bound read: *(shellincs[t+1]) in function ram_integer64_shellsort_asc  
"sort64.c", line 473: Warning: Likely out-of-bound read: *(shellincs[t+1]) in function ram_integer64_shellsort_desc  
"sort64.c", line 495: Warning: Likely out-of-bound read: *(shellincs[t+1]) in function ram_integer64_shellsortorder_asc  
"sort64.c", line 516: Warning: Likely out-of-bound read: *(shellincs[t+1]) in function ram_integer64_shellsortorder_desc  
"sort64.c", line 536: Warning: Likely out-of-bound read: *(shellincs[t+1]) in function ram_integer64_shellorder_asc  
"sort64.c", line 555: Warning: Likely out-of-bound read: *(shellincs[t+1]) in function ram_integer64_shellorder_desc  
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c sortuse64.c -o sortuse64.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o bit64.so bsearch.o cache.o hash64.o init.o integer64.o sort64.o sortuse64.o -lm
installing to /tmp/RtmpkQaaHG/RLIBS_4108b707183/00LOCK-bit64/00new/bit64/libs
** R
** data
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bit64)
* installing *source* package ‘progress’ ...
** package ‘progress’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (progress)
* installing *source* package ‘ordinal’ ...
** package ‘ordinal’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c get_fitted.c -o get_fitted.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c init.c -o init.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c links.c -o links.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c utilityFuns.c -o utilityFuns.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o ordinal.so get_fitted.o init.o links.o utilityFuns.o
installing to /tmp/RtmpkQaaHG/RLIBS_4108b707183/00LOCK-ordinal/00new/ordinal/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ordinal)
ERROR: dependency ‘tzdb’ is not available for package ‘vroom’
* removing ‘/tmp/RtmpkQaaHG/RLIBS_4108b707183/vroom’
Warning in install.packages(pkg, repos = "https://cloud.r-project.org/",  :
  installation of package ‘vroom’ had non-zero exit status
* installing *source* package ‘jomo’ ...
** package ‘jomo’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c jomo1C.c -o jomo1C.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c jomo1ranC.c -o jomo1ranC.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c jomo1ranhrC.c -o jomo1ranhrC.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c jomo1ranhrsmcC.c -o jomo1ranhrsmcC.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c jomo1ransmcC.c -o jomo1ransmcC.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c jomo1smcC.c -o jomo1smcC.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c jomo2comC.c -o jomo2comC.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c jomo2hrC.c -o jomo2hrC.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c jomo2hrsmcC.c -o jomo2hrsmcC.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c jomo2smcC.c -o jomo2smcC.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c jomo_init.c -o jomo_init.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c pdflib.c -o pdflib.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG   -I/usr/local/include  -KPIC  -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore  -c wishart.c -o wishart.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o jomo.so jomo1C.o jomo1ranC.o jomo1ranhrC.o jomo1ranhrsmcC.o jomo1ransmcC.o jomo1smcC.o jomo2comC.o jomo2hrC.o jomo2hrsmcC.o jomo2smcC.o jomo_init.o pdflib.o wishart.o
installing to /tmp/RtmpkQaaHG/RLIBS_4108b707183/00LOCK-jomo/00new/jomo/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (jomo)
ERROR: dependencies ‘vroom’, ‘tzdb’ are not available for package ‘readr’
* removing ‘/tmp/RtmpkQaaHG/RLIBS_4108b707183/readr’
Warning in install.packages(pkg, repos = "https://cloud.r-project.org/",  :
  installation of package ‘readr’ had non-zero exit status
ERROR: dependency ‘readr’ is not available for package ‘haven’
* removing ‘/tmp/RtmpkQaaHG/RLIBS_4108b707183/haven’
Warning in install.packages(pkg, repos = "https://cloud.r-project.org/",  :
  installation of package ‘haven’ had non-zero exit status
ERROR: dependency ‘haven’ is not available for package ‘mitml’
* removing ‘/tmp/RtmpkQaaHG/RLIBS_4108b707183/mitml’
Warning in install.packages(pkg, repos = "https://cloud.r-project.org/",  :
  installation of package ‘mitml’ had non-zero exit status

The downloaded source packages are in
	‘/tmp/RtmpkQaaHG/working_dir/RtmpIIaiSb/downloaded_packages’
Error in loadNamespace(x) : there is no package called ‘mitml’
Calls: D1 ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted