Error(s) in re-building vignettes:
--- re-building 'hierarchicalmanual.rnw' using knitr
System dimensions inferred from LAMBDA
n.TDpred inferred  inferred from TDpredNames
n.TIpred inferred  inferred from TIpredNames
Custom par cint2 set as: param = cint2; transform = 10 * param; indvarying = TRUE; sdscale = 1; cint2 tipred effects from: TI1
System dimensions inferred from manifestNames and latentNames
n.TDpred inferred  inferred from TDpredNames
n.TIpred inferred  inferred from TIpredNames
LAMBDA vector spec input rowwise into 2 * 2 matrix:
MANIFESTMEANS specified via single value -- filling 2 * 1 matrix:
CINT vector spec input rowwise into 2 * 1 matrix:
Custom par cint2 set as: param = cint2; transform = 10 * param; indvarying = TRUE; sdscale = 1; cint2 tipred effects from: TI1
Free T0VAR parameters as well as indvarying T0MEANS -- fixing T0VAR pars to diag matrix of 1e-3
Free T0VAR parameters as well as indvarying T0MEANS -- fixing T0VAR pars to diag matrix of 1e-3
Maximum a posteriori estimation requested
NA's in TIpreds - imputing 1  NA's to allow optimization -- TIpred effect estimates may be overly confident.
NA's in TDpreds! Replaced by zeroes, consider appropriateness...
Using 1/48 logical CPU cores
Doing 1st pass optimize...
Converged -- lp and par change within tolerances
Including TI predictors...
Converged -- lp and par change within tolerances
Optimizing...
Converged -- lp change within itertol
Estimating Hessian
Computing posterior with 1000 samples
Computing temporal regression coefficients for 100 samples, may take a moment...
pdftex: major issue: So far, you have not checked for updates as a MiKTeX user.
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
Fitting model to empty dataset...
Maximum a posteriori estimation requested
Using 1/48 logical CPU cores
Optimizing...
Estimating Hessian
Computing posterior with 10000 samples
pdftex: major issue: So far, you have not checked for updates as a MiKTeX user.
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
Computing state estimates..
Computing quantities for 1 samples...
Warning: `guides(<scale> = FALSE)` is deprecated. Please use `guides(<scale> = "none")` instead.
Quitting from lines 352-356 (hierarchicalmanual.rnw) 
Error: processing vignette 'hierarchicalmanual.rnw' failed with diagnostics:
invalid line type: must be length 2, 4, 6 or 8
--- failed re-building 'hierarchicalmanual.rnw'

SUMMARY: processing the following file failed:
  'hierarchicalmanual.rnw'

Error: Vignette re-building failed.
Execution halted