Running ‘testthat.R’ [16s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(openVA)
  ───────────────────── Attaching packages for openVA 1.0.12 ─────────────────────
  ✔ InSilicoVA 1.3.1
  ✔ InterVA4   1.7.6
  ✔ InterVA5   1.1.0
  ✔ Tariff     1.0.5
  ── Optional packages (require manual installation if not attached) ─────────────
  × nbc4va     
  If you need to use these methods, you may need to load or install the packages: nbc4va.
  You can run in your R terminal:
  library('nbc4va')
  
  > 
  > test_check("openVA")
  
  Start re-sampling for significant Tariff cells
  Calculating ranks
  
  Start re-sampling for significant Tariff cells
  Calculating ranks
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (tests.stackplot.R:23:3): Insilico - every symptom is the same broad cause ──
  Error: data length differs from size of matrix: [4368 != 168 x 13]
  Backtrace:
      █
   1. └─openVA::codeVA(...) tests.stackplot.R:23:2
   2.   ├─base::do.call("insilico.train", pairlist(args)[[1]][-1])
   3.   └─InSilicoVA::insilico.train(...)
   4.     └─InSilicoVA::extract.prob(...)
   5.       └─InSilicoVA:::toLevel(cond.prob, rev(levels), freqs)
   6.         └─base::matrix(new, dim(cond.prob)[1], dim(cond.prob)[2])
  ── Error (tests.stackplot.R:42:3): InterVA4 - every symptom is the same broad cause ──
  Error: data length differs from size of matrix: [4368 != 168 x 13]
  Backtrace:
      █
   1. └─openVA::codeVA(...) tests.stackplot.R:42:2
   2.   └─openVA::interVA.train(...)
   3.     └─InSilicoVA::extract.prob(...)
   4.       └─InSilicoVA:::toLevel(cond.prob, rev(levels), freqs)
   5.         └─base::matrix(new, dim(cond.prob)[1], dim(cond.prob)[2])
  ── Error (tests.stackplot.R:61:3): InterVA5 - every symptom is the same broad cause ──
  Error: data length differs from size of matrix: [4368 != 168 x 13]
  Backtrace:
      █
   1. └─openVA::codeVA(...) tests.stackplot.R:61:2
   2.   └─openVA::interVA.train(...)
   3.     └─InSilicoVA::extract.prob(...)
   4.       └─InSilicoVA:::toLevel(cond.prob, rev(levels), freqs)
   5.         └─base::matrix(new, dim(cond.prob)[1], dim(cond.prob)[2])
  ── Error (tests.stackplot.R:116:3): InSilico - list of three identical runs ────
  Error: data length differs from size of matrix: [4368 != 168 x 13]
  Backtrace:
      █
   1. └─openVA::codeVA(...) tests.stackplot.R:116:2
   2.   ├─base::do.call("insilico.train", pairlist(args)[[1]][-1])
   3.   └─InSilicoVA::insilico.train(...)
   4.     └─InSilicoVA::extract.prob(...)
   5.       └─InSilicoVA:::toLevel(cond.prob, rev(levels), freqs)
   6.         └─base::matrix(new, dim(cond.prob)[1], dim(cond.prob)[2])
  ── Error (tests.stackplot.R:133:3): InterVA4 - list of three identical runs ────
  Error: data length differs from size of matrix: [4368 != 168 x 13]
  Backtrace:
      █
   1. └─openVA::codeVA(...) tests.stackplot.R:133:2
   2.   └─openVA::interVA.train(...)
   3.     └─InSilicoVA::extract.prob(...)
   4.       └─InSilicoVA:::toLevel(cond.prob, rev(levels), freqs)
   5.         └─base::matrix(new, dim(cond.prob)[1], dim(cond.prob)[2])
  ── Error (tests.stackplot.R:151:3): InterVA5 - list of three identical runs ────
  Error: data length differs from size of matrix: [4368 != 168 x 13]
  Backtrace:
      █
   1. └─openVA::codeVA(...) tests.stackplot.R:151:2
   2.   └─openVA::interVA.train(...)
   3.     └─InSilicoVA::extract.prob(...)
   4.       └─InSilicoVA:::toLevel(cond.prob, rev(levels), freqs)
   5.         └─base::matrix(new, dim(cond.prob)[1], dim(cond.prob)[2])
  ── Error (tests.stackplot.R:207:3): InterVA4 - category missing from grouping is handled ──
  Error: data length differs from size of matrix: [4368 != 168 x 13]
  Backtrace:
      █
   1. └─openVA::codeVA(...) tests.stackplot.R:207:2
   2.   └─openVA::interVA.train(...)
   3.     └─InSilicoVA::extract.prob(...)
   4.       └─InSilicoVA:::toLevel(cond.prob, rev(levels), freqs)
   5.         └─base::matrix(new, dim(cond.prob)[1], dim(cond.prob)[2])
  
  [ FAIL 7 | WARN 0 | SKIP 0 | PASS 4 ]
  Error: Test failures
  Execution halted