Error(s) in re-building vignettes:
  ...
--- re-building 'benchmarking.Rmd' using knitr
--- finished re-building 'benchmarking.Rmd'

--- re-building 'run_bipartite.Rmd' using knitr
--- finished re-building 'run_bipartite.Rmd'

--- re-building 'run_igraph.Rmd' using knitr
Quitting from lines 67-78 (run_igraph.Rmd) 
Error: processing vignette 'run_igraph.Rmd' failed with diagnostics:
data length differs from size of matrix: [4000 != 20 x 20]
--- failed re-building 'run_igraph.Rmd'

--- re-building 'run_leiden.Rmd' using knitr
Quitting from lines 67-78 (run_leiden.Rmd) 
Error: processing vignette 'run_leiden.Rmd' failed with diagnostics:
data length differs from size of matrix: [4000 != 20 x 20]
--- failed re-building 'run_leiden.Rmd'

--- re-building 'run_multiplex.Rmd' using knitr
Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in brewer.pal(max(c(10, partition)), "Pastel1") :
  n too large, allowed maximum for palette Pastel1 is 9
Returning the palette you asked for with that many colors

Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in brewer.pal(max(c(10, partition)), "Pastel1") :
  n too large, allowed maximum for palette Pastel1 is 9
Returning the palette you asked for with that many colors

Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in brewer.pal(max(c(10, partition)), "Pastel1") :
  n too large, allowed maximum for palette Pastel1 is 9
Returning the palette you asked for with that many colors

Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in arrows(x0 = (1 - arrow_clip) * Xn[match(as.character(es$V1),  :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
--- finished re-building 'run_multiplex.Rmd'

SUMMARY: processing the following files failed:
  'run_igraph.Rmd' 'run_leiden.Rmd'

Error: Vignette re-building failed.
Execution halted