Running ‘test-all.R’ [99s/126s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  > test_check("EpiModel")
  Loading required package: EpiModel
  Loading required package: deSolve
  Loading required package: networkDynamic
  Loading required package: network
  network: Classes for Relational Data
  Version 1.16.1 created on 2020-10-06.
  copyright (c) 2005, Carter T. Butts, University of California-Irvine
                      Mark S. Handcock, University of California -- Los Angeles
                      David R. Hunter, Penn State University
                      Martina Morris, University of Washington
                      Skye Bender-deMoll, University of Washington
   For citation information, type citation("network").
   Type help("network-package") to get started.
  
  
  networkDynamic: version 0.10.1, created on 2020-01-16
  Copyright (c) 2020, Carter T. Butts, University of California -- Irvine
                      Ayn Leslie-Cook, University of Washington
                      Pavel N. Krivitsky, University of Wollongong
                      Skye Bender-deMoll, University of Washington
                      with contributions from
                      Zack Almquist, University of California -- Irvine
                      David R. Hunter, Penn State University
                      Li Wang
                      Kirk Li, University of Washington
                      Steven M. Goodreau, University of Washington
                      Jeffrey Horner
                      Martina Morris, University of Washington
  Based on "statnet" project software (statnet.org).
  For license and citation information see statnet.org/attribution
  or type citation("networkDynamic").
  
  Loading required package: tergm
  Loading required package: ergm
  
  ergm: version 3.11.0, created on 2020-10-14
  Copyright (c) 2020, Mark S. Handcock, University of California -- Los Angeles
                      David R. Hunter, Penn State University
                      Carter T. Butts, University of California -- Irvine
                      Steven M. Goodreau, University of Washington
                      Pavel N. Krivitsky, UNSW Sydney
                      Martina Morris, University of Washington
                      with contributions from
                      Li Wang
                      Kirk Li, University of Washington
                      Skye Bender-deMoll, University of Washington
                      Chad Klumb
                      Michał Bojanowski, Kozminski University
                      Ben Bolker
  Based on "statnet" project software (statnet.org).
  For license and citation information see statnet.org/attribution
  or type citation("ergm").
  
  NOTE: Versions before 3.6.1 had a bug in the implementation of the bd()
  constraint which distorted the sampled distribution somewhat. In
  addition, Sampson's Monks datasets had mislabeled vertices. See the
  NEWS and the documentation for more details.
  
  NOTE: Some common term arguments pertaining to vertex attribute and
  level selection have changed in 3.10.0. See terms help for more
  details. Use 'options(ergm.term=list(version="3.9.4"))' to use old
  behavior.
  
  
  tergm: version 3.7.0, created on 2020-10-15
  Copyright (c) 2020, Pavel N. Krivitsky, UNSW Sydney
                      Mark S. Handcock, University of California -- Los Angeles
                      with contributions from
                      David R. Hunter, Penn State University
                      Steven M. Goodreau, University of Washington
                      Martina Morris, University of Washington
                      Nicole Bohme Carnegie, New York University
                      Carter T. Butts, University of California -- Irvine
                      Ayn Leslie-Cook, University of Washington
                      Skye Bender-deMoll
                      Li Wang
                      Kirk Li, University of Washington
                      Chad Klumb
  Based on "statnet" project software (statnet.org).
  For license and citation information see statnet.org/attribution
  or type citation("tergm").
  
  Loading required package: tergmLite
  EpiModel NOTE: EpiModel 2.0 implements significant changes to the
  EpiModel application programming interface (API), which may require
  updates to model code written under EpiModel 1.x.  See
  https://epimodel.org/ for migration guidance.
  
  
  Starting Network Simulation...
  Sim = 1/5
  Sim = 2/5
  Sim = 3/5
  Sim = 4/5
  Sim = 5/5
  Starting Network Simulation...
  Sim = 1/5
  Sim = 2/5
  Sim = 3/5
  Sim = 4/5
  Sim = 5/5
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/20
  Prevalence: 14
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/20
  Prevalence: 18
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/20
  Prevalence: 24
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/20
  Prevalence: 31
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/20
  Prevalence: 37
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/20
  Prevalence: 43
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/20
  Prevalence: 52
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/20
  Prevalence: 66
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/20
  Prevalence: 80
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 11/20
  Prevalence: 89
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 12/20
  Prevalence: 96
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 13/20
  Prevalence: 108
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 14/20
  Prevalence: 113
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 15/20
  Prevalence: 126
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 16/20
  Prevalence: 139
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 17/20
  Prevalence: 150
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 18/20
  Prevalence: 159
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 19/20
  Prevalence: 170
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 20/20
  Prevalence: 184
  Population Size: 1000
  ----------------------------
  EpiModel Summary
  =======================
  Model class: netsim
  
  Simulation Details
  -----------------------
  Model type: SI
  No. simulations: 1
  No. time steps: 20
  No. NW groups: 1
  
  Model Statistics
  ------------------------------
  Time: 20 
  ------------------------------ 
            mean  sd    pct
  Suscept.   816   0  0.816
  Infect.    184   0  0.184
  Total     1000   0  1.000
  S -> I      14   0     NA
  ------------------------------ 
  
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 11
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 13
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 18
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 18
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 24
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 26
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 30
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 35
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 39
  Population Size: 1000
  ----------------------------
  EpiModel Summary
  =======================
  Model class: netsim
  
  Simulation Details
  -----------------------
  Model type: SIS
  No. simulations: 1
  No. time steps: 10
  No. NW groups: 1
  
  Model Statistics
  ------------------------------
  Time: 10 
  ------------------------------ 
            mean  sd    pct
  Suscept.   961   0  0.961
  Infect.     39   0  0.039
  Total     1000   0  1.000
  S -> I       4   0     NA
  I -> S       0   0     NA
  ------------------------------ 
  
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 16
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 21
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 27
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 35
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 42
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 47
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 48
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 52
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 57
  Population Size: 1000
  ----------------------------
  EpiModel Summary
  =======================
  Model class: netsim
  
  Simulation Details
  -----------------------
  Model type: SIR
  No. simulations: 1
  No. time steps: 10
  No. NW groups: 1
  
  Model Statistics
  ------------------------------
  Time: 10 
  ------------------------------ 
            mean  sd    pct
  Suscept.   931   0  0.931
  Infect.     57   0  0.057
  Recov.      12   0  0.012
  Total     1000   0  1.000
  S -> I       5   0     NA
  I -> R       0   0     NA
  ------------------------------ 
  
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/20
  Prevalence: 57
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/20
  Prevalence: 72
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/20
  Prevalence: 93
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/20
  Prevalence: 115
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/20
  Prevalence: 146
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/20
  Prevalence: 175
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/20
  Prevalence: 205
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/20
  Prevalence: 238
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/20
  Prevalence: 278
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 11/20
  Prevalence: 323
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 12/20
  Prevalence: 363
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 13/20
  Prevalence: 388
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 14/20
  Prevalence: 418
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 15/20
  Prevalence: 460
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 16/20
  Prevalence: 487
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 17/20
  Prevalence: 516
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 18/20
  Prevalence: 533
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 19/20
  Prevalence: 546
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 20/20
  Prevalence: 565
  Population Size: 1000
  ----------------------------
  EpiModel Summary
  =======================
  Model class: netsim
  
  Simulation Details
  -----------------------
  Model type: SI
  No. simulations: 1
  No. time steps: 20
  No. NW groups: 2
  
  Model Statistics
  ------------------------------------------------------------
  Time: 20 
  ------------------------------------------------------------ 
            mean:g1  sd:g1  pct:g1  mean:g2  sd:g2  pct:g2
  Suscept.      208      0   0.416      227      0   0.454
  Infect.       292      0   0.584      273      0   0.546
  Total         500      0   1.000      500      0   1.000
  S -> I          9      0      NA       10      0      NA
  ------------------------------------------------------------ 
  
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 50
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 59
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 69
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 82
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 88
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 94
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 106
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 115
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 127
  Population Size: 1000
  ----------------------------
  EpiModel Summary
  =======================
  Model class: netsim
  
  Simulation Details
  -----------------------
  Model type: SIS
  No. simulations: 1
  No. time steps: 10
  No. NW groups: 2
  
  Model Statistics
  ------------------------------------------------------------
  Time: 10 
  ------------------------------------------------------------ 
            mean:g1  sd:g1  pct:g1  mean:g2  sd:g2  pct:g2
  Suscept.      430      0    0.86      443      0   0.886
  Infect.        70      0    0.14       57      0   0.114
  Total         500      0    1.00      500      0   1.000
  S -> I          9      0      NA        5      0      NA
  I -> S          0      0      NA        2      0      NA
  ------------------------------------------------------------ 
  
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 33
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 38
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 46
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 55
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 71
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 83
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 91
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 102
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 109
  Population Size: 1000
  ----------------------------
  EpiModel Summary
  =======================
  Model class: netsim
  
  Simulation Details
  -----------------------
  Model type: SIR
  No. simulations: 1
  No. time steps: 10
  No. NW groups: 2
  
  Model Statistics
  ------------------------------------------------------------
  Time: 10 
  ------------------------------------------------------------ 
            mean:g1  sd:g1  pct:g1  mean:g2  sd:g2  pct:g2
  Suscept.      424      0   0.848      438      0   0.876
  Infect.        62      0   0.124       47      0   0.094
  Recov.         14      0   0.028       15      0   0.030
  Total         500      0   1.000      500      0   1.000
  S -> I          4      0      NA        7      0      NA
  I -> R          1      0      NA        3      0      NA
  ------------------------------------------------------------ 
  
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 13
  Population Size: 997
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 14
  Population Size: 995
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 18
  Population Size: 990
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 22
  Population Size: 988
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 26
  Population Size: 985
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 32
  Population Size: 987
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 38
  Population Size: 985
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 39
  Population Size: 983
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 42
  Population Size: 976
  ----------------------------
  EpiModel Summary
  =======================
  Model class: netsim
  
  Simulation Details
  -----------------------
  Model type: SI
  No. simulations: 1
  No. time steps: 10
  No. NW groups: 1
  
  Model Statistics
  ------------------------------
  Time: 10 
  ------------------------------ 
                  mean  sd    pct
  Suscept.         934   0  0.957
  Infect.           42   0  0.043
  Total            976   0  1.000
  S -> I             4   0     NA
  Arrival ->         4   0     NA
  S Departure ->    10   0     NA
  I Departure ->     1   0     NA
  ------------------------------ 
  
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 14
  Population Size: 1001
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 17
  Population Size: 1002
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 20
  Population Size: 1003
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 21
  Population Size: 1007
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 26
  Population Size: 1009
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 28
  Population Size: 1011
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 35
  Population Size: 1010
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 39
  Population Size: 1010
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 42
  Population Size: 1011
  ----------------------------
  EpiModel Summary
  =======================
  Model class: netsim
  
  Simulation Details
  -----------------------
  Model type: SIS
  No. simulations: 1
  No. time steps: 10
  No. NW groups: 1
  
  Model Statistics
  ------------------------------
  Time: 10 
  ------------------------------ 
                  mean  sd    pct
  Suscept.         969   0  0.958
  Infect.           42   0  0.042
  Total           1011   0  1.000
  S -> I             5   0     NA
  I -> S             1   0     NA
  Arrival ->         5   0     NA
  S Departure ->     3   0     NA
  I Departure ->     1   0     NA
  ------------------------------ 
  
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 11
  Population Size: 1001
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 14
  Population Size: 998
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 14
  Population Size: 997
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 16
  Population Size: 995
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 18
  Population Size: 993
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 21
  Population Size: 996
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 28
  Population Size: 992
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 34
  Population Size: 992
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 39
  Population Size: 990
  ----------------------------
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 129
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 153
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 180
  Population Size: 1005
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 198
  Population Size: 1002
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 208
  Population Size: 1002
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 226
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 236
  Population Size: 999
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 251
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 269
  Population Size: 1001
  ----------------------------
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 130
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 146
  Population Size: 998
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 168
  Population Size: 997
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 186
  Population Size: 997
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 210
  Population Size: 997
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 224
  Population Size: 998
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 226
  Population Size: 997
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 237
  Population Size: 998
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 248
  Population Size: 995
  ----------------------------
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 28
  Population Size: 998
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 35
  Population Size: 996
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 43
  Population Size: 988
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 46
  Population Size: 987
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 49
  Population Size: 988
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 53
  Population Size: 990
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 57
  Population Size: 992
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 62
  Population Size: 987
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 67
  Population Size: 991
  ----------------------------
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/5
  Prevalence: 15
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/5
  Prevalence: 18
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/5
  Prevalence: 24
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/5
  Prevalence: 32
  Population Size: 1000
  ----------------------------
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/5
  Prevalence: 12
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/5
  Prevalence: 16
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/5
  Prevalence: 21
  Population Size: 1000
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/5
  Prevalence: 28
  Population Size: 1000
  ----------------------------EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 1
  Time Steps per Sim: 10
  
  Formation Diagnostics
  ----------------------- 
        Target Sim Mean Pct Diff Sim SD
  edges     15     11.8  -21.333  0.632
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration   20.00    3.000  -85.000     NA
  Pct Edges Diss   0.05    0.034  -31.818  0.044
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 10
  
  Formation Diagnostics
  ----------------------- 
        Target Sim Mean Pct Diff Sim SD
  edges     15    14.45   -3.667  1.504
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration   20.00    5.500   -72.50  2.121
  Pct Edges Diss   0.05    0.049    -1.77  0.046
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 10
  
  Formation Diagnostics
  ----------------------- 
             Target Sim Mean Pct Diff Sim SD
  edges          15    16.45    9.667  1.849
  concurrent     NA     6.95       NA  1.356
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration   20.00      NaN      NaN     NA
  Pct Edges Diss   0.05    0.048   -4.931   0.06
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 10
  
  Formation Diagnostics
  ----------------------- 
          Target Sim Mean Pct Diff Sim SD
  meandeg     NA    0.478       NA  0.083
  edges       15       NA       NA     NA
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration   20.00    2.000  -90.000     NA
  Pct Edges Diss   0.05    0.026  -48.352  0.044
  
  Network Diagnostics
  -----------------------
  - Simulating 2 networks
    |**|
  - Calculating formation statistics
  - Calculating duration statistics
    |**|
  - Calculating dissolution statistics
    |**|
   
  Network Diagnostics
  -----------------------
  - Simulating 1 network
  - Calculating formation statisticsEpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 50
  
  Formation Diagnostics
  ----------------------- 
                      Target Sim Mean Pct Diff Sim SD
  edges                   15     16.9   12.667  5.124
  offset(mix.loc.0.1)     NA      0.0       NA  0.000
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration  40.000   17.462  -56.346 14.432
  Pct Edges Diss  0.025    0.022  -12.744  0.035
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 50
  
  Formation Diagnostics
  ----------------------- 
                Target Sim Mean Pct Diff Sim SD
  edges             15   14.030   -6.467  2.393
  meandeg           NA    0.561       NA  0.096
  concurrent        NA    5.500       NA  2.087
  nodematch.loc     NA   14.030       NA  2.393
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration  40.000    8.348  -79.130  8.172
  Pct Edges Diss  0.025    0.030   20.783  0.045
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 50
  
  Formation Diagnostics
  ----------------------- 
              Target Sim Mean Pct Diff Sim SD
  edges           15    16.89     12.6  2.318
  mix.loc.0.1      0     0.00      NaN  0.000
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration  40.000   13.150  -67.125  8.580
  Pct Edges Diss  0.025    0.029   16.883  0.039
  
  Network Diagnostics
  -----------------------
  - Simulating 250 networks
  - Calculating formation statistics
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/5
  Prevalence: 10
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/5
  Prevalence: 11
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/5
  Prevalence: 13
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/5
  Prevalence: 14
  Population Size: 50
  ----------------------------
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 12
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 17
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 20
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 24
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 26
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 26
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 26
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 26
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 26
  Population Size: 50
  ----------------------------
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 13
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 13
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 13
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 13
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 13
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 13
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 13
  Population Size: 49
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 13
  Population Size: 49
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 13
  Population Size: 49
  ----------------------------
  Starting Network Simulation...
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 2/10
  Prevalence: 12
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 3/10
  Prevalence: 16
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 4/10
  Prevalence: 17
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 5/10
  Prevalence: 17
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 6/10
  Prevalence: 17
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 7/10
  Prevalence: 17
  Population Size: 50
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 8/10
  Prevalence: 18
  Population Size: 49
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 9/10
  Prevalence: 18
  Population Size: 49
  ----------------------------
  Epidemic Simulation
  ----------------------------
  Simulation: 1/1
  Timestep: 10/10
  Prevalence: 18
  Population Size: 49
  ----------------------------
  Starting Network Simulation...
  Sim = 1/1
  1/10	
  2/10	
  3/10	
  4/10	
  5/10	
  6/10	
  7/10	
  8/10	
  9/10	
  10/10	══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (81)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-netdx.R:53:3): Edges only models ────────────────────────────────
  Error: argument of length 0
  Backtrace:
      █
   1. ├─base::plot(dx4, type = "duration") test-netdx.R:53:2
   2. └─EpiModel:::plot.netdx(dx4, type = "duration")
  
  [ FAIL 1 | WARN 0 | SKIP 81 | PASS 329 ]
  Error: Test failures
  Execution halted