Packages required but not available:
  'rrcov', 'tkrplot', 'Rcmdr', 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'RColorBrewer'

Packages suggested but not available for checking:
  'YaleToolkit', 'qgraph', 'maps', 'ade4', 'effects', 'abind', 'vcd',
  'car', 'gpairs', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcmdr', 'demography', 'forecast', 'ftsa', 'ggplot2', 'dplyr',
  'scales', 'zoo', 'data.table'

Packages suggested but not available for checking: 'tkrplot', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcmdr', 'runjags', 'rmeta', 'igraph', 'coda', 'rjags'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcmdr', 'ROCR', 'pROC', 'ResourceSelection'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lpSolve', 'sampling', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SCVA', 'SCRT', 'SCMA', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SLC', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sos', 'Rcmdr', 'tcltk2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'steepness'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'date', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'sutteForecastR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'TeachingDemos', 'Rcmdr'

Packages suggested but not available for checking: 'rgl', 'tkrplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcmdr', 'Hmisc', 'tcltk2', 'randtests', 'tseries', 'IndexNumR',
  'lme4', 'distr', 'distrEx'

Package suggested but not available for checking: 'tkrplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tm', 'NLP', 'slam', 'zoo', 'Rcmdr', 'tcltk2', 'ca', 'R2HTML',
  'RColorBrewer', 'latticeExtra', 'stringi'

Packages suggested but not available for checking:
  'SnowballC', 'ROpenOffice', 'RODBC', 'tm.plugin.factiva',
  'tm.plugin.lexisnexis', 'tm.plugin.europresse', 'tm.plugin.alceste',
  'twitteR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'IQCC', 'qcc', 'qicharts2', 'randtests', 'rmarkdown',
  'TeachingDemos', 'tseries', 'Rcmdr'

Packages suggested but not available for checking:
  'car', 'carData', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Depends: includes the non-default packages:
  'IQCC', 'qcc', 'qicharts2', 'randtests', 'rmarkdown',
  'TeachingDemos', 'tseries'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'WorldFlora', 'Rcmdr'

Packages suggested but not available for checking: 'data.table', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RcmdrMisc', 'car', 'effects', 'tcltk2', 'abind', 'relimp', 'lme4'

Packages suggested but not available for checking:
  'aplpack', 'colorspace', 'e1071', 'Hmisc', 'knitr', 'leaps',
  'lmtest', 'markdown', 'multcomp', 'nortest', 'readxl', 'rgl',
  'rmarkdown', 'sem'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'dplyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
brewer.pal: no visible global function definition for 'rgb'
display.brewer.all: no visible global function definition for 'par'
display.brewer.all: no visible global function definition for 'rect'
display.brewer.all: no visible global function definition for 'text'
display.brewer.pal: no visible global function definition for 'image'
Undefined global functions or variables:
  image par rect rgb text
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "image", "par", "rect", "text")
to your NAMESPACE file.
Package required but not available: 'magrittr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crul', 'tibble', 'jsonlite', 'data.table', 'glue'

Packages suggested but not available for checking: 'testthat', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DescTools', 'multcompView', 'plyr', 'EMT', 'coin', 'lmtest',
  'nortest'

Package suggested but not available for checking: 'FSA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'clisymbols', 'crayon', 'devtools', 'gert', 'gh', 'gtools',
  'rmarkdown', 'rstudioapi', 'stringr', 'usethis', 'xfun'

Packages suggested but not available for checking:
  'fs', 'knitr', 'remotes', 'testthat', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
addLine: no visible global function definition for 'abline'
ellipse: no visible global function definition for 'approx'
ellipse: no visible global function definition for 'tail'
Undefined global functions or variables:
  abline approx tail
Consider adding
  importFrom("graphics", "abline")
  importFrom("stats", "approx")
  importFrom("utils", "tail")
to your NAMESPACE file.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'diffr', 'ggplot2', 'httr', 'knitr', 'markdown',
  'microbenchmark', 'rmarkdown', 'rstudioapi', 'rvest', 'shiny',
  'shinythemes', 'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'crul', 'jsonlite', 'pdftools', 'hoardr'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'knitr', 'rmarkdown', 'rcrossref', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FITSio', 'Rcpp', 'mmap', 'tibble', 'rgl', 'cli', 'entropy', 'geoR',
  'nnls'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'R.rsp', 'gsl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gtools', 'glmnet', 'fishMod'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gmp', 'Rcpp', 'RcppThread'

Packages suggested but not available for checking:
  'testthat', 'numbers', 'microbenchmark', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'minidown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'tinytest', 'pkgKitten', 'reticulate', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gmp', 'Rcpp', 'RcppThread'

Packages suggested but not available for checking:
  'testthat', 'numbers', 'RcppAlgos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppClassic'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pinp', 'reticulate'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'Rcpp'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'inline', 'DEoptim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'wrapr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'tinytest', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppEigen', 'functional', 'memoise', 'readr', 'Rdpack', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'inline', 'tinytest', 'pkgKitten', 'microbenchmark'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'knitr'

Package suggested but not available for checking: 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LinkingTo' for 'Rcpp' is unused as it has no 'include' directory
Packages required but not available: 'data.table', 'Rcpp', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppParallel', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'nloptr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc', 'mvtnorm', 'RcppEigen'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'Rcpp', 'RUnit', 'knitr', 'rmarkdown'
Package unavailable to check Rd xrefs: 'Rcpp'
GNU make is a SystemRequirements.
Running 'doRUnit.R'
Running the tests in 'tests/doRUnit.R' failed.
Complete output:
  > stopifnot(require(RUnit, quietly = TRUE))
  Error: require(RUnit, quietly = TRUE) is not TRUE
  In addition: Warning message:
  In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
    there is no package called 'RUnit'
  Execution halted
Packages suggested but not available for checking:
  'RcppArmadillo', 'devtools', 'roxygen2', 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'tinytest', 'inline', 'rbenchmark', 'pkgKitten'
Package unavailable to check Rd xrefs: 'inline'
Packages required but not available: 'Rcpp', 'RApiSerialize', 'BH'

Packages suggested but not available for checking:
  'RcppMsgPack', 'rredis', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'zoo', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'bit64', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'minidown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'R.rsp', 'Rcpp'

VignetteBuilder package required for checking but not installed: 'R.rsp'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Packages suggested but not available for checking:
  'tinytest', 'uuid', 'microbenchmark'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'xts'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppGSL'

Packages suggested but not available for checking:
  'rbenchmark', 'microbenchmark', 'knitr', 'rmarkdown', 'pinp'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'xml2', 'data.table', 'foreach', 'doParallel', 'selectr',
  'webdriver', 'callr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forecast', 'ggmap', 'htmltools', 'igraph', 'leaflet',
  'leafsync', 'lubridate', 'pals', 'raster', 'Rcpp', 'rgdal', 'sp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'XML', 'httr', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'truncnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'crul', 'xml2', 'plyr', 'dplyr', 'tibble', 'R6', 'shiny',
  'miniUI', 'stringr', 'DT'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'knitr', 'rmarkdown', 'vcr', 'bibtex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RcppAnnoy', 'igraph', 'mclust', 'NbClust', 'Rtsne', 'ggplot2',
  'pracma', 'umap', 'SingleCellExperiment'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/Rcssplot.Rnw'
(Is a VignetteBuilder field missing?)
'LazyData' is specified without a 'data' directory
Files named as vignettes but with no recognized vignette engine:
   'vignettes/Rcssplot.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available:
  'dplyr', 'purrr', 'glue', 'rlang', 'tidyr', 'stringr', 'pracma',
  'lfe', 'broom', 'forcats', 'magrittr', 'ggplot2', 'tidyselect'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'qpdf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bitops'

Package suggested but not available for checking: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tibble', 'magrittr', 'tidyselect', 'tidyr', 'purrr',
  'rlang', 'stringr', 'ggplot2', 'Rdpack'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tcpl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rjson'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'curl', 'httr', 'jsonlite', 'magrittr'

Packages suggested but not available for checking:
  'raster', 'czso', 'units', 'ggplot2', 'stringr', 'rvest', 'xml2',
  'scales', 'knitr', 'testthat', 'roxygen2', 'devtools', 'rmarkdown',
  'dplyr', 'lwgeom', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'roxygen2', 'xfun', 'formatR'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

Package suggested but not available for checking: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'vegan', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'crul', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'webmockr', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reticulate', 'semver'

Packages suggested but not available for checking:
  'testthat', 'DBI', 'devtools', 'RSQLite', 'RPostgreSQL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'data.table', 'jsonlite'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'minpack.lm', 'Rdpack', 'dplyr', 'magrittr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'tibble', 'ggplot2', 'ggpubr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'lpdensity'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sandwich', 'lmtest', 'AER', 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'slam', 'truncreg', 'truncnorm', 'maxLik'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'rlang'

Packages suggested but not available for checking:
  'covr', 'knitr', 'pander', 'rmarkdown', 'testthat', 'utf8'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'clipr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'lintr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
distimage: no visible binding for global variable 'terrain.colors'
distimage: no visible global function definition for 'filled.contour'
distimage: no visible global function definition for 'title'
distimage: no visible global function definition for 'axis'
distimage: no visible global function definition for 'lines'
drawkpc: no visible global function definition for 'segments'
drawkpc: no visible global function definition for 'lines'
modelimage: no visible binding for global variable 'topo.colors'
modelimage: no visible global function definition for 'filled.contour'
modelimage: no visible global function definition for 'title'
modelimage: no visible global function definition for 'axis'
modelimage: no visible global function definition for 'lines'
sincdata: no visible global function definition for 'runif'
sincdata: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  axis filled.contour lines rnorm runif segments terrain.colors title
  topo.colors
Consider adding
  importFrom("grDevices", "terrain.colors", "topo.colors")
  importFrom("graphics", "axis", "filled.contour", "lines", "segments",
             "title")
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Packages required but not available:
  'R.methodsS3', 'R.oo', 'R.utils', 'base64enc'

Packages suggested but not available for checking:
  'digest', 'Cairo', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'redland', 'jsonld', 'stringi', 'readr', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'magrittr', 'covr', 'testthat', 'knitr', 'rmarkdown', 'jqr', 'DT',
  'tibble', 'purrr', 'lubridate', 'httr', 'xml2', 'jsonlite',
  'repurrrsive', 'nycflights13', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'curl', 'plyr', 'XML', 'dplyr', 'xml2', 'readr',
  'data.table', 'purrr', 'lubridate'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'here'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'doParallel', 'foreach'

Packages suggested but not available for checking:
  'pryr', 'rARPACK', 'knitr', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'brio', 'R6', 'httr', 'jsonlite', 'magrittr', 'rappdirs', 'digest',
  'storr', 'xml2', 'qdapRegex', 'rgdal', 'getPass', 'haven', 'iotools'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2', 'survey', 'data.table',
  'microbenchmark', 'sf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'curl'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'descr'
sumry_categorical: no visible global function definition for 'freq'
sumry_continous: no visible global function definition for 'quantile'
Undefined global functions or variables:
  freq quantile
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
Running examples in 'RDIDQ-Ex.R' failed
The error most likely occurred in:

> ### Name: sumry_categorical
> ### Title: Summary of categorical variable
> ### Aliases: sumry_categorical
> 
> ### ** Examples
> 
> library(descr)
Error in library(descr) : there is no package called 'descr'
Execution halted
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/RDieHarder/RDieHarder.Rcheck/00install.out' for details.
Packages required but not available:
  'CVXR', 'RANN', 'Rcpp', 'RcppDE', 'Rcsdp', 'Rdpack', 'RSpectra',
  'maotai', 'mclustcomp', 'RcppArmadillo', 'RcppDist'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'beanplot', 'gplots', 'pdist', 'stringr'

Packages suggested but not available for checking: 'knitr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'binaryLogic', 'reshape2'

Packages suggested but not available for checking:
  'ape', 'testthat', 'knitr', 'rmarkdown', 'covr', 'vcfR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'AER', 'sandwich'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'data.table', 'pipeR', 'readxl', 'rlist', 'R6',
  'stringr', 'xml2', 'lubridate'

Packages suggested but not available for checking:
  'chipPCR', 'magrittr', 'reshape2', 'qpcR', 'dplyr', 'ggplot2',
  'knitr', 'kfigr', 'MBmca', 'shiny', 'shinyjs', 'shinythemes',
  'shinyMolBio', 'V8', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'rdrobust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'Biostrings', 'GOSemSim', 'foreach', 'doParallel', 'RCurl',
  'org.Hs.eg.db'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'brew', 'httr', 'stringr', 'xml2'

Packages suggested but not available for checking: 'knitr', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'crayon', 'cli', 'prettycode'

Packages suggested but not available for checking:
  'testthat', 'mockery', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'proto', 'rjson'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'urltools', 'glmnet', 'XML', 'httr', 'xml2', 'curl', 'virustotal',
  'aws.alexa', 'rlang', 'jsonlite', 'devtools'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr', 'lintr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'devtools'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rbibutils'

Packages suggested but not available for checking:
  'testthat', 'rstudioapi', 'rprojroot', 'gbRd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rdrobust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertive', 'digest', 'dplyr', 'httr', 'jsonlite', 'magrittr',
  'purrr'

Packages suggested but not available for checking: 'testthat', 'uuid'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crul', 'curl', 'tibble', 'hoardr', 'zip', 'jsonlite', 'mime'

Packages suggested but not available for checking: 'testthat', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'library' or 'require' call to 'synchronicity' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages required but not available:
  'gridExtra', 'ggplot2', 'network', 'igraph', 'reshape2', 'scales',
  'anytime', 'Hmisc', 'statnet.common', 'ergm', 'isotone'

Packages suggested but not available for checking: 'survey', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'rjson', 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'mvtnorm', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'digest', 'gtools', 'jsonlite', 'knitr', 'provSummarizeR',
  'provViz', 'rlang', 'rmarkdown', 'sessioninfo', 'stringi', 'XML'

Packages suggested but not available for checking:
  'ggplot2', 'roxygen2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'ggplot2', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'serial'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'berryFunctions', 'pbapply'

Packages suggested but not available for checking:
  'RCurl', 'leaflet', 'knitr', 'rmarkdown', 'testthat', 'roxygen2',
  'devtools', 'remotes', 'bit64', 'data.table', 'OSMscale', 'raster',
  'R.utils', 'ncdf4', 'readr', 'dwdradar', 'XML', 'sp', 'rgdal'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'rgrass7'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reactable', 'dplyr', 'htmltools', 'shiny', 'stringr'

Package suggested but not available for checking: 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'htmltools', 'htmlwidgets', 'jsonlite', 'reactR'

Packages suggested but not available for checking:
  'covr', 'crosstalk', 'dplyr', 'leaflet', 'rmarkdown', 'shiny',
  'sparkline', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

Packages suggested but not available for checking:
  'shiny', 'knitr', 'rmarkdown', 'htmltools', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rootSolve', 'deSolve', 'shape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmltools'

Packages suggested but not available for checking:
  'htmlwidgets', 'rmarkdown', 'shiny', 'V8', 'knitr', 'usethis',
  'jsonlite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Packages required but not available:
  'readxl', 'dplyr', 'hutils', 'fst', 'curl', 'purrr', 'tidyr',
  'stringi', 'rsdmx', 'glue', 'httr', 'rvest', 'xml2', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bmp', 'jpeg', 'png', 'tiff'

Packages suggested but not available for checking: 'pixmap', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages unavailable to check Rd xrefs: 'readMzXmlData', 'MALDIquantForeign'
Packages required but not available: 'plyr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'raster', 'stringr', 'rgdal', 'rgeos', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'NCmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'R.utils'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'data.table', 'zoo', 'readr',
  'lubridate', 'zip'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'haven', 'jsonlite', 'readr', 'readxl'

Packages suggested but not available for checking:
  'devtools', 'dplyr', 'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra', 'pinp'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'base64enc', 'digest', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'cellranger', 'readr', 'stringi'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'rvest', 'purrr', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readxl', 'tidyr', 'dplyr', 'purrr', 'rlang', 'xml2', 'rvest',
  'stringr', 'httr', 'lubridate'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'readr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'gdata'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'clipr', 'crayon', 'hms', 'rlang', 'R6', 'tibble',
  'lifecycle', 'BH', 'cpp11'

Packages suggested but not available for checking:
  'covr', 'curl', 'dplyr', 'knitr', 'rmarkdown', 'spelling', 'stringi',
  'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'xml2', 'purrr', 'dplyr', 'rlang', 'stringi', 'magrittr',
  'deSolve'

Packages suggested but not available for checking:
  'testthat', 'igraph', 'knitr', 'rmarkdown', 'ggplot2', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'tibble', 'purrr', 'readr', 'stringr', 'plyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'antiword', 'data.table', 'digest', 'httr', 'jsonlite', 'pdftools',
  'readODS', 'readxl', 'streamR', 'stringi', 'striprtf', 'tibble',
  'xml2'

Packages suggested but not available for checking:
  'knitr', 'pkgload', 'rmarkdown', 'quanteda', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'curl'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'chk', 'hms', 'DBI', 'RSQLite', 'lifecycle', 'tibble'

Packages suggested but not available for checking:
  'covr', 'pool', 'testthat', 'knitr', 'rmarkdown', 'units', 'sf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cellranger', 'Rcpp', 'tibble', 'progress'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'rprojroot', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'xml2', 'cellranger'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numDeriv', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'dplyr', 'lifecycle', 'plyr', 'purrr', 'rlang', 'tibble'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'knitr', 'plotly', 'testthat', 'tidyr', 'xpectr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'reliaR'

Packages suggested but not available for checking:
  'Rmosek', 'knitr', 'digest'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/Bdecon.Rnw'
   'inst/doc/medde.Rnw'
   'inst/doc/rebayes.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'dplyr', 'assertthat'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking:
  'flexmix', 'mclust', 'mixtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'stringi', 'testthat'
Packages unavailable to check Rd xrefs: 'stringi', 'rebus.unicode'
'LazyData' is specified without a 'data' directory
Running examples in 'rebus.base-Ex.R' failed
The error most likely occurred in:

> ### Name: Anchors
> ### Title: The start or end of a string.
> ### Aliases: Anchors START END exactly
> ### Keywords: datasets
> 
> ### ** Examples
> 
> START
<regex> ^
> END
<regex> $
> 
> # Usage
> x <- c("catfish", "tomcat", "cat")
> (rx_start <- START %R% "cat")
<regex> ^cat
> (rx_end <- "cat" %R% END)
<regex> cat$
> (rx_exact <- exactly("cat"))
<regex> ^cat$
> stringi::stri_detect_regex(x, rx_start)
Error in loadNamespace(x) : there is no package called 'stringi'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'rebus.base'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rebus.base'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rebus.base', 'rebus.datetimes', 'rebus.numbers', 'rebus.unicode'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rebus.base'

Package suggested but not available for checking: 'stringi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kriging', 'Rcpp'

Packages suggested but not available for checking:
  'devtools', 'dplyr', 'knitr', 'magrittr', 'rgl', 'rmarkdown',
  'roxygen2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'RCurl', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ReCiPa: no visible global function definition for 'count.fields'
ReCiPa: no visible global function definition for 'read.table'
Undefined global functions or variables:
  count.fields read.table
Consider adding
  importFrom("utils", "count.fields", "read.table")
to your NAMESPACE file.
Packages required but not available:
  'dplyr', 'ellipsis', 'generics', 'glue', 'gower', 'ipred',
  'lifecycle', 'lubridate', 'magrittr', 'purrr', 'rlang', 'tibble',
  'tidyr', 'tidyselect', 'timeDate', 'withr'

Packages suggested but not available for checking:
  'covr', 'ddalpha', 'dimRed', 'fastICA', 'ggplot2', 'igraph',
  'kernlab', 'knitr', 'modeldata', 'RANN', 'RcppRoll', 'rmarkdown',
  'rsample', 'RSpectra', 'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lvec', 'ldat', 'dplyr', 'stringdist', 'lpSolve', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'vegan', 'picante', 'phangorn', 'phytools', 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GA', 'Rcpp', 'sp'

Packages suggested but not available for checking:
  'doParallel', 'knitr', 'shiny', 'testthat', 'tufte', 'xtable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'crayon'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'recommenderlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'recommenderlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'arules', 'proxy', 'registry', 'irlba', 'recosystem'

Packages suggested but not available for checking: 'ROCR', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rootSolve'

Packages suggested but not available for checking:
  'plot3D', 'dplyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'rlang', 'survminer'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'openssl'

Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'crayon'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DBI', 'RSQLite', 'ff', 'e1071', 'ada', 'ipred', 'evd', 'data.table',
  'xtable'

Packages suggested but not available for checking: 'RUnit', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/BigData.rnw'
   'inst/doc/EVT.rnw'
   'inst/doc/Supervised.rnw'
   'inst/doc/WeightBased.rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'ggpubr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppProgress'

Packages suggested but not available for checking: 'knitr', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'circular', 'prevR', 'scales', 'fields', 'move', 'knitr',
  'rmarkdown', 'sp', 'rgeos'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'visNetwork', 'readr', 'shiny', 'shinyjs',
  'jsonlite', 'DT', 'colourpicker', 'rintrojs', 'markdown',
  'rstudioapi', 'crayon', 'igraph'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'splines2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'car', 'GPArotation', 'mclust', 'psych', 'UsingR', 'vcd'
Packages required but not available:
  'checkmate', 'chron', 'DBI', 'httr', 'labelVector', 'lubridate',
  'readr', 'stringr', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'data.table', 'keyring', 'lubridate'

Packages suggested but not available for checking:
  'devtools', 'fs', 'knitr', 'magrittr', 'qwraps2', 'rmarkdown',
  'rjson', 'secret', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'dplyr', 'httr', 'magrittr', 'readr', 'rlang', 'tibble',
  'tidyr'

Packages suggested but not available for checking:
  'covr', 'DBI', 'kableExtra', 'knitr', 'odbc', 'rmarkdown',
  'sessioninfo', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RJSONIO', 'igraph', 'magrittr', 'dplyr', 'visNetwork', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'snowfall', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'REddyProc'

Packages suggested but not available for checking:
  'ncdf4', 'RNetCDF', 'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'rlang', 'mlegp', 'tibble', 'magrittr',
  'solartime', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'minpack.lm', 'segmented', 'knitr', 'rmarkdown',
  'lognorm', 'ggplot2', 'tidyr', 'bigleaf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'speedglm', 'PoissonBinomial', 'maftools', 'data.table',
  'RColorBrewer'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'RUnit', 'BiocStyle', 'BiocGenerics', 'dplyr',
  'kableExtra', 'TCGAbiolinks', 'magick'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'roxygen2'

Packages suggested but not available for checking:
  'spelling', 'knitr', 'testthat', 'rmarkdown', 'stringi'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'sp', 'plyr', 'rgeos'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rgdal', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppThread'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

Package suggested but not available for checking: 'plumber'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BAT', 'dismo', 'gdistance', 'geosphere', 'jsonlite', 'maptools',
  'raster', 'rgdal', 'rgeos', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'imager'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'storr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'sys', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'AER'
Running examples in 'REEMtree-Ex.R' failed
The error most likely occurred in:

> ### Name: REEMtree
> ### Title: Create a RE-EM tree
> ### Aliases: REEMtree
> ### Keywords: tree models
> 
> ### ** Examples
> 
> data(simpleREEMdata)
> REEMresult<-REEMtree(Y~D+t+X, data=simpleREEMdata, random=~1|ID)
> 
> # Estimation allowing for autocorrelation
> REEMresult<-REEMtree(Y~D+t+X, data=simpleREEMdata, random=~1|ID,
+ 	correlation=corAR1())
> 
> # Random parameters model for the random effects
> REEMresult<-REEMtree(Y~D+t+X, data=simpleREEMdata, random=~1+X|ID)
> 
> # Estimation with a subset
> sub <- rep(c(rep(TRUE, 10), rep(FALSE, 2)), 50)
> REEMresult<-REEMtree(Y~D+t+X, data=simpleREEMdata, random=~1|ID,
+ 	subset=sub)
> 
> # Dataset from the R library "AER"
> data("Grunfeld", package = "AER")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called 'AER'
Calls: data -> find.package
Execution halted
Packages required but not available: 'extremevalues', 'car', 'outliers'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgdal', 'spdep', 'mvtnorm', 'coda', 'MCMCglmm', 'Rdpack'

Packages suggested but not available for checking:
  'maptools', 'maps', 'sp', 'knitr', 'rmarkdown', 'RColorBrewer',
  'captioner', 'rcrossref'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'stringdist', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'jsonlite', 'plyr', 'httr', 'lubridate', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'testthat', 'bibtex'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'jsonlite', 'tibble', 'dplyr', 'httr'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fda', 'magic', 'gamm4', 'lme4', 'RLRsim', 'grpreg', 'ggplot2', 'pbs'

Packages suggested but not available for checking:
  'RColorBrewer', 'reshape2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bestglm', 'leaps', 'VGAM', 'randomForest', 'rpart.plot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
cluster.reg: no visible global function definition for 'rnorm'
cluster.reg: no visible global function definition for 'runif'
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Packages suggested but not available for checking: 'magrittr', 'pipeR'
'LazyData' is specified without a 'data' directory
Running examples in 'regexPipes-Ex.R' failed
The error most likely occurred in:

> ### Name: grep
> ### Title: Overriding grep from base package
> ### Aliases: gregexpr grep grepl gsub regexec regexpr sub
> 
> ### ** Examples
> 
> library(magrittr)
Error in library(magrittr) : there is no package called 'magrittr'
Execution halted
Packages required but not available: 'shiny', 'shinyjs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'config', 'DT', 'RColorBrewer', 'golem', 'shiny', 'shinyBS',
  'shinythemes', 'processx', 'htmltools', 'data.table', 'stringr',
  'tidyr', 'pkgload', 'rvest', 'xml2', 'purrr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'lme4'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'knitr', 'textshaping'

Package suggested but not available for checking: 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'testthat', 'magrittr', 'countrycode', 'tidyselect',
  'purrr', 'rlang', 'glue', 'tidyr', 'readxl', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'tidyr', 'magrittr', 'dplyr', 'gridExtra', 'Rcpp',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Namespace in Imports field not imported from: 'MASS'
  All declared Imports should be used.
Package required but not available: 'mvtnorm'

Package suggested but not available for checking: 'plgp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Deriv', 'assertthat', 'sandwich'

Packages suggested but not available for checking:
  'furrr', 'future', 'geepack', 'knitr', 'mice', 'mitools', 'modelr',
  'purrr', 'rlang', 'stringr', 'testthat', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glasso', 'igraph', 'knitr', 'Rcpp', 'RcppArmadillo', 'lavaan'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'vioplot', 'sm', 'beanplot', 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'denpro'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'sns', 'MfUSampler'
Errors in running code in vignettes:
when running code in 'RegressionFactory.Rnw'
  ...
> y <- rbinom(N, size = 1, prob = 1/(1 + exp(-X %*% 
+     beta)))

> beta.glm <- glm(y ~ X - 1, family = "binomial")$coefficients

> library(sns)

  When sourcing 'RegressionFactory.R':
Error: there is no package called 'sns'
Execution halted

  'RegressionFactory.Rnw' using 'latin1'... failed
Error(s) in re-building vignettes:
  ...
--- re-building 'RegressionFactory.Rnw' using Sweave
RegressionFactory 0.7.4

Error: processing vignette 'RegressionFactory.Rnw' failed with diagnostics:
 chunk 9 
Error in library(sns) : there is no package called 'sns'

--- failed re-building 'RegressionFactory.Rnw'

SUMMARY: processing the following file failed:
  'RegressionFactory.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'shiny', 'shinyAce', 'shinydashboardPlus', 'flexdashboard',
  'shinyWidgets', 'neuralnet', 'rpart.plot', 'e1071', 'kknn',
  'corrplot', 'glmnet', 'ggplot2', 'dplyr', 'htmltools', 'forcats',
  'gbm', 'stringr', 'xtable', 'rattle'

Packages suggested but not available for checking:
  'randomForest', 'DT', 'colourpicker', 'shinyjs', 'gridExtra',
  'tibble', 'scales', 'scatterplot3d', 'psych', 'dummies', 'testthat',
  'pls'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'dplyr', 'magrittr', 'tidyr', 'usdm', 'scales',
  'robustbase', 'stringr', 'MuMIn', 'ggplot2', 'lspline'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rmpi', 'doParallel', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'SSBtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'Rcpp', 'Rsolnp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'snowfall', 'markdown', 'GA', 'caret', 'glmnet', 'ISLR', 'lbfgs',
  'numDeriv', 'psych', 'knitr', 'nloptr', 'NlcOptim', 'optimx',
  'semPlot', 'colorspace', 'plyr', 'matrixStats', 'stringr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'formattable', 'effsize', 'mefa', 'plyr', 'plotrix', 'sjPlot',
  'sjmisc', 'sjlabelled'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FNN', 'mvtnorm', 'dummies', 'sandwich'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gtools', 'psych', 'RGCCA', 'ggplot2', 'mice', 'colorspace'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rehh.data'

Packages suggested but not available for checking:
  'ape', 'bookdown', 'data.table', 'gap', 'knitr', 'qqman',
  'rmarkdown', 'R.utils', 'testthat', 'vcfR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rtweet', 'tibble', 'dplyr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'hash', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'interval', 'Icens'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'data.table', 'dplyr', 'viridis', 'viridisLite', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'survey', 'mitools', 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'compare'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'sets'

Packages suggested but not available for checking:
  'Rgraphviz', 'clue', 'Rglpk', 'lpSolve', 'Rsymphony'

Packages which this enhances but not available for checking:
  'seriation', 'Rcplex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Hmisc'

Package suggested but not available for checking: 'locfit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readxl', 'ggforce', 'ggplot2', 'xlsx', 'dplyr', 'sf', 'rmarkdown'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/relevance-descr.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/relevance-descr.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available: 'trust', 'sna', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'readr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'foreach'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'tidyr', 'ggplot2', 'ggExtra', 'dplyr', 'purrr', 'rlang',
  'tibble', 'vctrs', 'bde'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
duane: no visible global function definition for 'optim'
duane.plot: no visible global function definition for 'lines'
duane.plot: no visible global function definition for 'legend'
duane.plot: no visible global function definition for 'title'
littlewood.verall: no visible global function definition for 'optim'
littlewood.verall.plot: no visible global function definition for
  'lines'
littlewood.verall.plot: no visible global function definition for
  'legend'
littlewood.verall.plot: no visible global function definition for
  'title'
moranda.geometric: no visible global function definition for 'optimize'
moranda.geometric.plot: no visible global function definition for
  'lines'
moranda.geometric.plot: no visible global function definition for
  'legend'
moranda.geometric.plot: no visible global function definition for
  'title'
musa.okumoto: no visible global function definition for 'optimize'
musa.okumoto.plot: no visible global function definition for 'lines'
musa.okumoto.plot: no visible global function definition for 'legend'
musa.okumoto.plot: no visible global function definition for 'title'
rel.plot: no visible global function definition for 'lines'
rel.plot: no visible global function definition for 'segments'
rel.plot: no visible global function definition for 'legend'
rel.plot: no visible global function definition for 'title'
total.plot: no visible global function definition for 'lines'
total.plot: no visible global function definition for 'legend'
total.plot: no visible global function definition for 'title'
Undefined global functions or variables:
  legend lines optim optimize segments title
Consider adding
  importFrom("graphics", "legend", "lines", "segments", "title")
  importFrom("stats", "optim", "optimize")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Packages required but not available:
  'relaimpo', 'Rmisc', 'caret', 'ggplot2', 'reshape2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'Rcmdr'
Packages required but not available:
  'Familias', 'gWidgets2', 'gWidgets2tcltk'

Packages suggested but not available for checking:
  'knitr', 'pander', 'rmarkdown', 'tkrplot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xtable', 'multicool', 'rvest', 'stringr', 'xml2', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'date'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'units'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'knitr', 'lwgeom', 'magrittr', 'maps',
  'rmarkdown', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tibble'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'knitr', 'rstudioapi', 'rematch2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'assertthat'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'proxy', 'igraph', 'clusterGeneration'

Packages suggested but not available for checking:
  'graph', 'Rgraphviz', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'raster', 'gridExtra', 'latticeExtra', 'mapdata', 'scales'

Packages suggested but not available for checking: 'maps', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pbdZMQ', 'getPass', 'argon2', 'png'

Packages suggested but not available for checking: 'sodium', 'pbdRPC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'brew', 'callr', 'curl', 'covr', 'git2r', 'knitr', 'mockery',
  'pkgbuild', 'pingr', 'rmarkdown', 'rprojroot', 'testthat',
  'webfakes', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'curl'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'foreach', 'doParallel'

Packages suggested but not available for checking:
  'texreg', 'statnet', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'data.table', 'Rcpp', 'R6', 'foreach', 'plotly', 'doParallel',
  'scales', 'magrittr', 'concatenate', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'webshot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'optimx', 'mvtnorm', 'AER', 'lme4', 'data.table',
  'corpcor', 'Rcpp', 'lmtest', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'covr', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'evd', 'numDeriv'

Packages suggested but not available for checking: 'ismev', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rsolnp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'R6', 'BiocManager', 'cli', 'covr', 'devtools', 'knitr', 'packrat',
  'remotes', 'reticulate', 'rmarkdown', 'rstudioapi', 'testthat',
  'uuid', 'yaml'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'gplots', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Packages in Depends field not imported from:
  'MASS' 'nlme'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
GlobTestMissing: no visible global function definition for 'lme'
GlobTestMissing: no visible global function definition for 'anova'
TestStatSP: no visible global function definition for 'pf'
TestStatSimple: no visible global function definition for 'ginv'
TestStatSimple: no visible global function definition for 'pf'
Undefined global functions or variables:
  anova ginv lme pf
Consider adding
  importFrom("stats", "anova", "pf")
to your NAMESPACE file.
Package required but not available: 'rmutil'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'dplyr', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'kableExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'modules', 'dat', 'knitr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'txtplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readxl', 'PowerTOST', 'lmerTest', 'pbkrtest'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat', 'spatstat.geom', 'spatstat.core', 'spatstat.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'metafor', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'MBESS', 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'blavaan', 'mice', 'quadprog', 'runjags', 'rjags'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'shiny', 'colourpicker'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'digest', 'httr', 'plyr', 'R.cache'

Package suggested but not available for checking: 'xlsx'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'flextable', 'lme4', 'lmerTest', 'officer', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rstudioapi', 'git2r', 'rmarkdown', 'httr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'digest'

Packages suggested but not available for checking:
  'igraph', 'knitr', 'shiny', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fmtr', 'stringi', 'crayon'

Packages suggested but not available for checking:
  'testthat', 'magrittr', 'dplyr', 'tidyr', 'readr', 'knitr',
  'ggplot2', 'rmarkdown', 'gridExtra', 'survminer', 'logr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rprojroot', 'fs', 'rmarkdown', 'checkpoint', 'yaml', 'callr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bayestestR', 'effectsize', 'insight', 'parameters', 'performance'

Packages suggested but not available for checking:
  'BayesFactor', 'brms', 'dplyr', 'httr', 'knitr', 'lavaan', 'lme4',
  'logspline', 'rmarkdown', 'rstanarm', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'pROC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ore'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'LDRTools'

Packages suggested but not available for checking: 'tourr', 'amap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'DT', 'REPPlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
MBoxtest: no visible global function definition for 'var'
jrparams: no visible global function definition for 'prcomp'
jrparams: no visible global function definition for 'predict'
jrparams: no visible global function definition for 'qchisq'
jrparams: no visible global function definition for 'qf'
Undefined global functions or variables:
  prcomp predict qchisq qf var
Consider adding
  importFrom("stats", "prcomp", "predict", "qchisq", "qf", "var")
to your NAMESPACE file.
Packages required but not available: 'doParallel', 'foreach', 'dplyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'blink', 'ggplot2', 'stringdist'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'whisker'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'callr', 'cli', 'clipr', 'fs', 'glue', 'knitr', 'rlang', 'rmarkdown',
  'rstudioapi', 'withr'

Packages suggested but not available for checking:
  'covr', 'fortunes', 'miniUI', 'mockr', 'rprojroot', 'sessioninfo',
  'shiny', 'spelling', 'styler', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'openxlsx', 'ggplot2', 'gridExtra', 'xtable', 'metafor', 'lme4',
  'reshape', 'GetoptLong', 'dplyr', 'httr', 'jsonlite', 'tidyr',
  'readr', 'stringr', 'tibble'

Packages suggested but not available for checking: 'testthat', 'assertthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'DBI', 'digest', 'fpCompare', 'glue', 'magrittr',
  'Require', 'raster', 'RSQLite', 'rlang', 'sp'

Packages suggested but not available for checking:
  'covr', 'crayon', 'fastdigest', 'fasterize', 'future', 'gdalUtils',
  'googledrive', 'httr', 'qs', 'knitr', 'RCurl', 'rgdal', 'rgeos',
  'rmarkdown', 'sf', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'proj4', 'PROJ', 'crsmeta'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'jsonlite', 'pillar', 'base64enc'

Packages suggested but not available for checking:
  'highr', 'Cairo', 'stringr', 'testthat', 'leaflet'

Packages which this enhances but not available for checking:
  'data.table', 'tibble', 'htmlwidgets', 'vegalite', 'plotly',
  'geojsonio'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'doParallel', 'optparse', 'randomForest', 'flux'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tibble'

Packages suggested but not available for checking:
  'gapminder', 'jsonlite', 'purrr', 'rprojroot', 'testthat',
  'wesanderson', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'assertthat', 'stringi', 'urltools', 'brotli', 'jsonlite',
  'xml2', 'webutils'

Packages suggested but not available for checking:
  'fiery', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'curl', 'jsonlite', 'magrittr', 'lazyeval', 'whisker', 'R6'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'remotes'

Package suggested but not available for checking: 'testit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'crul', 'dplyr', 'data.table', 'jsonlite', 'xml2', 'digest', 'ncdf4',
  'tibble', 'hoardr'

Packages suggested but not available for checking: 'testthat', 'vcr'

Package which this enhances but not available for checking: 'taxize'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'dplyr', 'ggplot2', 'httr', 'maps', 'ncdf4', 'parsedate',
  'plotdap', 'readr', 'rerddap', 'sf', 'sp'

Packages suggested but not available for checking:
  'cmocean', 'gganimate', 'knitr', 'mapdata', 'maptools', 'rgdal',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'psych', 'combinat', 'gdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BB', 'nleqslv', 'SQUAREM', 'directlabels', 'ggplot2', 'reda',
  'scam', 'Rcpp', 'rootSolve', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'resample'
Package suggested but not available for checking: 'splus2R'
.resampleMakeFunction: no visible global function definition for 'is'
.resampleSetSeed: no visible global function definition for 'runif'
CI.bca: no visible global function definition for 'is'
CI.bca: no visible global function definition for 'qnorm'
CI.bca: no visible global function definition for 'pnorm'
CI.t: no visible global function definition for 'qt'
ExpandProbs: no visible global function definition for 'pnorm'
ExpandProbs: no visible global function definition for 'qt'
colVars : f: no visible global function definition for 'var'
colVars: no visible global function definition for 'var'
hist.resample: no visible global function definition for 'density'
hist.resample: no visible global function definition for 'lines'
hist.resample: no visible global function definition for 'points'
hist.resample: no visible global function definition for 'approx'
hist.resample: no visible global function definition for 'segments'
resample: no visible global function definition for 'is'
samp.bootknife: no visible global function definition for 'runif'
samp.bootstrap: no visible global function definition for 'runif'
Undefined global functions or variables:
  approx density is lines pnorm points qnorm qt runif segments var
Consider adding
  importFrom("graphics", "lines", "points", "segments")
  importFrom("methods", "is")
  importFrom("stats", "approx", "density", "pnorm", "qnorm", "qt",
             "runif", "var")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Running 'runTests.R'
Running the tests in 'tests/runTests.R' failed.
Last 13 lines of output:
  > 
  > # Run all .t tests in tests/
  > 
  > require("splus2R")
  Loading required package: splus2R
  Warning message:
  In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
    there is no package called 'splus2R'
  > 
  > files <- list.files(pattern = "\\.t$")
  > 
  > for(file in files)
  +   do.test(file)
  Error in do.test(file) : could not find function "do.test"
  Execution halted
Packages required but not available:
  'data.table', 'dbscan', 'igraph', 'irlba', 'reticulate'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rentrez', 'XML', 'plyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'iterators', 'Rcpp', 'mathjaxr', 'magrittr', 'lifecycle',
  'data.table', 'RcppArmadillo'

Packages suggested but not available for checking:
  'prospectr', 'doParallel', 'testthat', 'formatR', 'rmarkdown',
  'bookdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'Rcpp', 'stringr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package which this enhances but not available for checking: 'SmartMeterAnalytics'
Packages required but not available: 'R6', 'httr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'haven', 'readr', 'readxl', 'ssh', 'sys',
  'mongolite', 'dplyr', 'dbplyr', 'DBI', 'RMariaDB', 'RPostgres',
  'sparklyr', 'RPresto', 'nodbi', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'signal', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'PKNCA', 'birk', 'lubridate', 'marelac', 'measurements',
  'minpack.lm', 'seacarb', 'segmented'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'rjson', 'xml2'

Packages suggested but not available for checking:
  'chron', 'knitr', 'rmarkdown', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'XML', 'RCurl', 'rjson', 'S4Vectors', 'yaml'

Packages suggested but not available for checking:
  'getPass', 'rsolr', 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'RJSONIO'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Rcmdr'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/RESTguide.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ic.infer', 'lavaan', 'mvtnorm', 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rserve', 'Rcpp', 'R6', 'uuid', 'checkmate', 'mime', 'jsonlite'

Packages suggested but not available for checking:
  'tinytest', 'lgr', 'lintr', 'knitr', 'rmarkdown', 'curl', 'sys'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'useful', 'dplyr', 'rmarkdown'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rjson'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'jsonlite', 'png', 'rappdirs', 'withr'

Packages suggested but not available for checking:
  'callr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RImageJROI', 'png', 'ttutils', 'sp', 'geometry', 'RTriangle', 'rgl',
  'R.matlab', 'R6'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'gWidgets2RGtk2', 'gWidgets2', 'cairoDevice',
  'RGtk2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'textreadr', 'httr'

Package suggested but not available for checking: 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'gridExtra', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'vctrs', 'haven', 'dplyr', 'magrittr', 'tibble', 'labelled', 'rlang',
  'fs', 'assertthat', 'tidyselect', 'pillar', 'snakecase', 'purrr',
  'tidyr', 'here'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat', 'png'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'stringi', 'httr', 'stringr', 'rvest'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlang', 'later'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'jsonlite', 'RCurl', 'XML', 'tibble'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doParallel', 'foreach'

Packages suggested but not available for checking:
  'knitr', 'ggplot2', 'dplyr', 'rivr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bayesplot', 'Rcpp', 'rust', 'RcppArmadillo'

Packages suggested but not available for checking:
  'evdbayes', 'ggplot2', 'knitr', 'microbenchmark', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'pso', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rmarkdown'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'XML', 'stringr', 'magrittr', 'gtools', 'plyr', 'purrr'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'mipfp', 'dplyr', 'truncdist'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'markdown', 'knitr', 'DT'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'RJSONIO'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bigrquery', 'config', 'dashboardthemes', 'DBI', 'dbplyr', 'dplyr',
  'DT', 'gargle', 'glue', 'golem', 'httr', 'jsonlite', 'magrittr',
  'pkgload', 'purrr', 'redcapAPI', 'REDCapR', 'rlang', 'RPostgres',
  'RSQLite', 'shiny', 'shinycssloaders', 'shinydashboard',
  'shinydashboardPlus', 'shinyjs', 'shinyWidgets', 'snakecase',
  'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'fs', 'gt', 'here', 'htmltools', 'knitr', 'processx', 'readr',
  'rmarkdown', 'rstudioapi', 'spelling', 'testthat', 'usethis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Package unavailable to check Rd xrefs: 'robustbase'
'LazyData' is specified without a 'data' directory
Running 'test-all.r'
Running the tests in 'tests/test-all.r' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ade4', 'modeltools', 'ngram', 'plotly', 'slam', 'shiny',
  'shinydashboard', 'SnowballC', 'stringdist', 'tm', 'topicmodels',
  'viridisLite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'jsonlite', 'purrr', 'httr', 'tidyselect',
  'tidyr', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
plot.reweight: no visible global function definition for 'par'
plot.reweight: no visible global function definition for 'density'
plot.reweight: no visible global function definition for 'rug'
reweight: no visible global function definition for 'aggregate'
search.best.h: no visible global function definition for 'quantile'
Undefined global functions or variables:
  aggregate density par quantile rug
Consider adding
  importFrom("graphics", "par", "rug")
  importFrom("stats", "aggregate", "density", "quantile")
to your NAMESPACE file.
Packages required but not available: 'rockchalk', 'lme4', 'plm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'digest', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lazyeval'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'dplyr', 'ggplot2', 'magrittr',
  'Hmisc', 'stringr', 'rvest', 'roxygen2', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'rjson', 'httpuv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'dplyr', 'purrr', 'tidyr', 'stringr',
  'tidyselect', 'pbapply'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'fs', 'tibble', 'xml2'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'rmarkdown', 'testthat', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rfast', 'RANN', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppZiggurat', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'CCA', 'PMA'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

Package which this enhances but not available for checking: 'RSEIS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mice', 'ranger'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Package required but not available: 'bdsmatrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'dtplyr', 'tidyr', 'stringr', 'sf', 'data.table', 'bit64',
  'tidyselect', 'rlang', 'ggplot2', 'lifecycle'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gganimate', 'R2jags', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'dplyr', 'httr', 'jsonlite', 'lubridate', 'magrittr',
  'purrr', 'tidyr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RJSONIO', 'httr', 'httpuv', 'plyr', 'yaml', 'ggplot2', 'XML'

Packages suggested but not available for checking:
  'testthat', 'gdata', 'uuid'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.oo', 'digest', 'R.methodsS3', 'R.utils', 'R.cache'

Package suggested but not available for checking: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'xts'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ranger'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'memoise', 'readr', 'rlang', 'magrittr', 'stringr',
  'gh', 'DBI', 'arkdb', 'curl', 'dbplyr', 'progress', 'RSQLite'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr', 'covr', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'clisymbols', 'crayon', 'readbitmap', 'rlang', 'settings',
  'stringr', 'tidyr', 'withr'

Packages suggested but not available for checking:
  'FSA', 'covr', 'pkgdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'data.table', 'assertthat', 'ggplot2', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'pracma', 'ggplot2', 'sf', 'rworldmap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'igraph', 'rgdal', 'sp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spdep', 'spData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RColorBrewer'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'MKomics'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'sp', 'sf', 'randomForest', 'zoo', 'pbapply'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rgdal'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'PKI', 'jsonlite', 'XML'

Packages suggested but not available for checking:
  'arules', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggthemes', 'lubridate', 'magrittr',
  'RColorBrewer', 'rlang', 'tibble', 'tidyr', 'xplorerr'

Packages suggested but not available for checking:
  'covr', 'DT', 'kableExtra', 'knitr', 'rmarkdown', 'testthat',
  'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RPMG', 'GEOmap', 'RSEIS', 'splancs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'XML', 'httr', 'plyr', 'RCurl'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'openxlsx'

Packages suggested but not available for checking:
  'fortunes', 'stringr', 'sos', 'XLConnect', 'reshape2', 'ggplot2',
  'covr', 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'visNetwork', 'glmnet', 'onehot', 'RcppArmadillo',
  'RcppThread'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'formatR'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'randomForest', 'abind', 'dplyr', 'ggplot2', 'gridExtra', 'magrittr',
  'rlang', 'scales', 'swfscMisc', 'tibble', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gmp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tibble', 'rPref', 'tidyr', 'hash'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'Rcpp', 'fda', 'plotly', 'shiny', 'Rssa', 'markdown',
  'RcppArmadillo'

Package suggested but not available for checking: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'sjmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'randomForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'randomForest', 'ggplot2', 'binaryLogic', 'dplyr', 'titanic', 'prob',
  'ggpubr', 'magrittr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'randomForest', 'loon'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Package suggested but not available for checking: 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
gabriel.plot: no visible global function definition for 'barplot'
gabriel.plot: no visible global function definition for 'arrows'
rgabriel: no visible binding for global variable 'sd'
rgabriel : psmm_x: no visible global function definition for 'pnorm'
rgabriel : psmm: no visible global function definition for 'integrate'
rgabriel : qsmm: no visible global function definition for 'qnorm'
rgabriel : qsmm: no visible global function definition for 'uniroot'
Undefined global functions or variables:
  arrows barplot integrate pnorm qnorm sd uniroot
Consider adding
  importFrom("graphics", "arrows", "barplot")
  importFrom("stats", "integrate", "pnorm", "qnorm", "sd", "uniroot")
to your NAMESPACE file.
Package required but not available: 'gsl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'httr', 'plyr', 'lubridate'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'ggplot2', 'crul', 'data.table', 'whisker', 'magrittr',
  'jsonlite', 'oai', 'tibble', 'wellknown', 'lazyeval', 'R6',
  'conditionz'

Packages suggested but not available for checking:
  'testthat', 'sp', 'rgeos', 'png', 'raster', 'protolite', 'sf',
  'randgeo', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'plyr', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sn', 'mnormt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'tkrplot'
Package required but not available: 'Deriv'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RNetCDF', 'ptw', 'mixOmics', 'colorRamps', 'Rdpack'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'caret', 'rgl', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

Packages suggested but not available for checking:
  'knitr', 'DBI', 'RSQLite', 'maptools', 'mapview', 'rmarkdown',
  'curl', 'rgeos'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'jsonlite', 'RCurl', 'httr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bit64', 'curl', 'data.table', 'fs', 'getPass', 'ggplot2', 'hdf5r',
  'jsonlite', 'lazyeval', 'raster', 'rgdal', 'rgeos', 'RColorBrewer',
  'sp'

Packages suggested but not available for checking:
  'leaflet', 'leafsync', 'lidR', 'plot3D', 'rasterVis', 'viridis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reticulate', 'magrittr', 'processx', 'crayon', 'cli'

Packages suggested but not available for checking:
  'leaflet', 'leaflet.extras2', 'magick', 'geojsonio', 'sf', 'stars',
  'googledrive', 'googleCloudStorageR', 'rstudioapi', 'jsonlite',
  'leafem', 'raster', 'rgdal', 'httr', 'digest', 'spelling',
  'testthat', 'future', 'covr', 'knitr', 'rmarkdown', 'png'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'copula', 'RGENERATE', 'blockmatrix', 'stringr', 'RMAWGEN'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'lubridate', 'leaflet', 'lmom', 'ggplot2',
  'reshape2', 'RefManageR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RMAWGEN'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'stringr', 'readr', 'tidyr',
  'tibble', 'forcats', 'cowplot', 'egg', 'ggdendro', 'gridExtra',
  'FNN', 'variancePartition', 'Rsamtools', 'IRanges'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'stringr', 'httr', 'rvest', 'foreach', 'tibble',
  'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
genoud: multiple local function definitions for 'fn1.bfgs' with
  different formal arguments
genoud: multiple local function definitions for 'gr1' with different
  formal arguments
genoud: multiple local function definitions for 'hess.fn' with
  different formal arguments
genoud_transform: multiple local function definitions for 'fn1.bfgs'
  with different formal arguments
genoud_transform: multiple local function definitions for 'gr1' with
  different formal arguments
Package unavailable to check Rd xrefs: 'Matching'
Running 'tests.R'
  Comparing 'tests.Rout' to 'tests.Rout.save' ... OK
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'digest', 'sf', 'Rcpp', 'BH'

Packages suggested but not available for checking: 'wkb', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'httr'

Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'readr', 'sf', 'stringr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'aspace', 'geosphere', 'leaflet', 'pals', 'RANN', 'raster', 'sp',
  'spatstat.geom', 'splancs'

Packages suggested but not available for checking:
  'htmlwidgets', 'leafsync', 'knitr', 'rgdal', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

Packages suggested but not available for checking:
  'maptools', 'testthat', 'XML', 'maps', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'igraph', 'servr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reticulate', 'R6'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'dplyr', 'httr', 'jsonlite', 'lazyeval', 'magrittr',
  'memoise', 'readr', 'tibble', 'tidyr', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'sf', 'tmap', 'Rdpack', 'XML', 'xml2', 'fields',
  'urltools', 'rjson', 'rvest', 'curl', 'httr', 'mapview', 'sp',
  'stars'

Package suggested but not available for checking: 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rjson', 'readr', 'RCurl', 'curl'

Packages suggested but not available for checking:
  'testthat', 'openssl', 'httr', 'markdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'htmltools', 'knitr', 'jsonlite', 'shiny', 'magrittr',
  'crosstalk', 'manipulateWidget'

Packages suggested but not available for checking:
  'rmarkdown', 'deldir', 'orientlib', 'misc3d', 'rstudioapi', 'magick',
  'plotrix', 'tripack', 'interp', 'alphashape3d', 'js', 'akima',
  'webshot2', 'downlit', 'pkgdown', 'extrafont'

Package which this enhances but not available for checking: 'waldo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sys', 'tibble', 'jsonlite', 'readr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'lubridate', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lubridate', 'httr', 'digest'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'jsonlite', 'bit64', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'png', 'sp'

Packages suggested but not available for checking:
  'PBSmapping', 'maptools', 'loa', 'RColorBrewer', 'leaflet', 'jpeg',
  'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'assertthat', 'R6'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'grImport', 'grImport2', 'gridBase', 'gridGraphics',
  'gridSVG'

Packages suggested but not available for checking:
  'colorspace', 'jpeg', 'mapdata', 'maps', 'party', 'pixmap', 'png',
  'quantmod', 'rsvg', 'showtext', 'sysfonts', 'tikzDevice', 'XML',
  'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

Packages suggested but not available for checking:
  'rgdal', 'RSQLite', 'sp', 'sf', 'stars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlang', 'xml2', 'rstudioapi', 'cli'

Packages suggested but not available for checking:
  'rgrass7', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'RPostgres'

Packages suggested but not available for checking: 'DBItest', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fastICA'

Package suggested but not available for checking: 'akima'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'magrittr', 'tibble'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found a 'configure.in' file: 'configure.ac' has long been preferred.
File 'RGtk2/libs/x64/RGtk2.dll':
  Found non-API calls to R: 'R_new_custom_connection',
    'Rf_EncodeInteger', 'Rf_EncodeLogical', 'Rf_EncodeReal',
    'Rf_formatInteger', 'Rf_formatLogical', 'Rf_formatReal'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Packages required but not available: 'sf', 'jsonlite', 'openssl'

Packages suggested but not available for checking:
  'curl', 'knitr', 'rmarkdown', 'tibble', 'testthat', 'stars'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'chron', 'RJDBC', 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'htmlwidgets', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shiny', 'miniUI', 'rstudioapi', 'htmltools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'IHSEP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fields', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bit64', 'httr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'shiny', 'stringr'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'purrr', 'ggplot2', 'matrixStats', 'patchwork'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggtree', 'phytools', 'testthat', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'magrittr', 'readr', 'dplyr', 'tidyr', 'rlang'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pso', 'Hmisc', 'network', 'GGally', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'microbenchmark'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rgl', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  > ## it under the terms of the GNU General Public License as published by
  > ## the Free Software Foundation, either version 3 of the License, or
  > ## (at your option) any later version.
  > ##
  > ## This program is distributed in the hope that it will be useful,
  > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
  > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > ## GNU General Public License for more details.
  > ##
  > ## You should have received a copy of the GNU General Public License
  > ## along with this program.  If not, see <https://www.gnu.org/licenses/>.
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  RhpcMPI.c:112:28: warning: ' "' directive output may be truncated writing 2 bytes into a region of size between 1 and 4096 [-Wformat-truncation=]
  fakemaster.c:82:57: warning: embedded '\0' in format [-Wformat-contains-nul]
  fakemaster.c:123:83: warning: '%s' directive output may be truncated writing up to 4095 bytes into a region of size 4046 [-Wformat-truncation=]
  fakemaster.c:109:60: warning: '%s' directive output may be truncated writing up to 4095 bytes into a region of size 4069 [-Wformat-truncation=]
  fakemaster.c:97:68: warning: '%s' directive output may be truncated writing up to 4095 bytes into a region of size 4061 [-Wformat-truncation=]
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Rhpc/Rhpc.Rcheck/00install.out' for details.
Packages required but not available: 'waveslim', 'nonlinearTseries', 'lomb'

Packages suggested but not available for checking:
  'tkrplot', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
RHT.2samp : my.HotellingT2 : my.InvCov2: no visible global function
  definition for 'cov'
RHT.2samp : get.lambda : get.para: no visible global function
  definition for 'optimize'
RHT.2samp : get.lambda : gg: no visible global function definition for
  'qchisq'
RHT.2samp : get.lambda : ggl: no visible global function definition for
  'qnorm'
RHT.2samp : <anonymous>: no visible global function definition for
  'cov'
RHT.fun : my.HotellingT : my.InvCov: no visible global function
  definition for 'cov'
RHT.fun : get.lambda : get.para: no visible global function definition
  for 'optimize'
RHT.fun : get.lambda : gg: no visible global function definition for
  'qchisq'
RHT.fun : get.lambda : ggl: no visible global function definition for
  'qnorm'
RHT.fun : <anonymous>: no visible global function definition for 'cov'
Undefined global functions or variables:
  cov optimize qchisq qnorm
Consider adding
  importFrom("stats", "cov", "optimize", "qchisq", "qnorm")
to your NAMESPACE file.
Packages required but not available:
  'assertthat', 'callr', 'cli', 'crayon', 'desc', 'digest', 'httr',
  'jsonlite', 'parsedate', 'pillar', 'prettyunits', 'processx', 'R6',
  'rappdirs', 'rcmdcheck', 'rematch', 'tibble', 'uuid', 'whoami',
  'withr'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R.methodsS3', 'R.oo', 'R.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'httr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gtools', 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'randomizr', 'estimatr', 'generics', 'ggplot2', 'pbapply'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ri'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'oro.dicom', 'oro.nifti', 'nat'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pedtools', 'slam', 'kinship2', 'glue'

Packages suggested but not available for checking: 'identity', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'riceidconverter'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'random'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'vegan'

Packages suggested but not available for checking:
  'knitr', 'gplots', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'reshape2', 'magrittr', 'metap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'curl', 'assertthat', 'fst', 'readr', 'jsonlite',
  'prt', 'tibble', 'backports', 'rlang', 'vctrs', 'cli', 'glue',
  'fansi'

Packages suggested but not available for checking:
  'openssl', 'xml2', 'covr', 'testthat', 'withr', 'pkgload',
  'mimic.demo', 'eicu.demo', 'progress', 'knitr', 'rmarkdown',
  'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'grImport2', 'rsvg', 'scales', 'tidyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'plyr', 'httr', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ridit.raw: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  pchisq
Consider adding
  importFrom("stats", "pchisq")
to your NAMESPACE file.
Packages required but not available:
  'Rcpp', 'Rdpack', 'RiemBase', 'maotai', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'pracma', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'lubridate', 'tibble', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'zoo', 'TTR', 'tidyr', 'tibble', 'dplyr', 'ggplot2', 'httr',
  'purrr', 'rjson', 'stringr', 'tidyverse', 'urltools', 'quantmod'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
R2ngon: no visible global function definition for 'approx'
plotR2pre: no visible global function definition for 'points'
plotR2pre: no visible global function definition for 'gray'
plotR2pre: no visible global function definition for 'legend'
plotR2pre: no visible global function definition for 'rainbow'
Undefined global functions or variables:
  approx gray legend points rainbow
Consider adding
  importFrom("grDevices", "gray", "rainbow")
  importFrom("graphics", "legend", "points")
  importFrom("stats", "approx")
to your NAMESPACE file.
Packages required but not available:
  'crayon', 'glue', 'httr', 'jsonlite', 'purrr', 'rlang', 'tibble',
  'vctrs'

Packages suggested but not available for checking:
  'covr', 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'imager', 'crayon', 'jsonlite', 'curl'

Package suggested but not available for checking: 'manipulate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'dplyr', 'stringr', 'readr', 'tibble', 'haven', 'xml2',
  'data.table', 'RCurl', 'DT'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'plotly', 'ggplot2', 'shiny',
  'tidyr', 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'spatstat.geom', 'spatstat'

Packages suggested but not available for checking: 'png', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'scales', 'jpeg', 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'httr', 'curl', 'plyr', 'jsonlite', 'ggplot2', 'maps', 'sp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'sf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R6'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'glue', 'httr', 'installr', 'jsonlite', 'magrittr',
  'pkgbuild', 'remotes', 'rmarkdown', 'shiny', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'stringi', 'covr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'glue'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'vegan'

Packages suggested but not available for checking: 'maptools', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'haven', 'curl', 'data.table', 'readxl', 'openxlsx', 'tibble'

Packages suggested but not available for checking:
  'bit64', 'testthat', 'knitr', 'magrittr', 'arrow', 'clipr',
  'feather', 'fst', 'hexView', 'jsonlite', 'pzfx', 'readODS', 'readr',
  'rmarkdown', 'rmatio', 'xml2', 'yaml'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LinkingTo' for 'Rcpp' is unused as it has no 'include' directory
Packages required but not available:
  'httr', 'iptools', 'dplyr', 'amerika', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
desmat.sanitize: no visible global function definition for 'aggregate'
dispdist: no visible global function definition for 'quantile'
dispdist: no visible global function definition for 'hist'
dispdist: no visible global function definition for 'lines'
estate: no visible global function definition for 'weighted.mean'
estate: no visible global function definition for 'lm'
genperms: no visible global function definition for 'combn'
genprobexact: no visible global function definition for 'ave'
invert.ci: no visible global function definition for 'quantile'
invert.ci: no visible global function definition for 'uniroot'
omni.ate: no visible global function definition for 'hist'
omni.ate: no visible global function definition for 'lines'
omni.ate: no visible global function definition for 'quantile'
resresplot: no visible global function definition for 'lm'
resresplot: no visible global function definition for 'symbols'
resresplot: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline aggregate ave combn hist lines lm quantile symbols uniroot
  weighted.mean
Consider adding
  importFrom("graphics", "abline", "hist", "lines", "symbols")
  importFrom("stats", "aggregate", "ave", "lm", "quantile", "uniroot",
             "weighted.mean")
  importFrom("utils", "combn")
to your NAMESPACE file.
Packages required but not available: 'ggplot2', 'Rcpp', 'reshape2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'relsurv', 'date', 'mvtnorm', 'statmod', 'doParallel', 'foreach',
  'kernlab', 'glmnet', 'caret', 'SuperLearner'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'dplyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'data.table', 'RcppEigen'

Packages suggested but not available for checking: 'igraph', 'IsingSampler'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'aod', 'mlogit', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'dplyr', 'knitr', 'usethis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'gridExtra', 'magrittr', 'purrr', 'rlang',
  'tidyr', 'tidyselect', 'tidyverse'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'printr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'alabama', 'nloptr', 'quadprog', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'ggplot2', 'numDeriv', 'pagedown', 'portfolioBacktest',
  'prettydoc', 'rmarkdown', 'R.rsp', 'testthat', 'viridisLite'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'nloptr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gee', 'Hmisc', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cmprsk', 'data.table', 'doParallel', 'foreach', 'ggplot2', 'lava',
  'mets', 'mvtnorm', 'plotrix', 'prodlim', 'Publish', 'ranger', 'Rcpp',
  'rms', 'timereg', 'RcppArmadillo'

Packages suggested but not available for checking:
  'smcfcs', 'casebase', 'ipw', 'gbm', 'flexsurv', 'mstate', 'numDeriv',
  'party', 'pec', 'penalized', 'pROC', 'randomForest',
  'randomForestSRC', 'scam', 'SuperLearner', 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
KM.plot: no visible global function definition for 'lines'
SchoenSmooth: no visible global function definition for 'lm'
llCoxReg: no visible binding for global variable 'time'
risksetAUC: no visible global function definition for 'abline'
risksetROC: no visible global function definition for 'abline'
weightedKM: no visible binding for global variable 'time'
Undefined global functions or variables:
  abline lines lm time
Consider adding
  importFrom("graphics", "abline", "lines")
  importFrom("stats", "lm", "time")
to your NAMESPACE file.
Package required but not available: 'Runuran'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'
Note: found 14 marked UTF-8 strings
Package required but not available: 'minpack.lm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'solrium', 'crul', 'jsonlite', 'data.table', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'webmockr', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SparseM', 'abind', 'xtable', 'svd'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'RSVGTipsDevice'

Package which this enhances but not available for checking: 'optmatch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'rgdal', 'sp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'imputeTS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'utility'
'LazyData' is specified without a 'data' directory
Package required but not available: 'RColorBrewer'

Packages suggested but not available for checking:
  'knitr', 'maptools', 'qpdf', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'signal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rrcov', 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'knitr', 'rmarkdown', 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'V8'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bbmle', 'binom', 'dplyr', 'ggplot2', 'mvtnorm', 'numDeriv',
  'openxlsx', 'readxl', 'Rcpp', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  Rinit.c:251:21: warning: assignment to 'blah1' {aka 'int (*)(const char *, char *, int,  int)'} from incompatible pointer type 'int (*)(const char *, unsigned char *, int,  int)' [-Wincompatible-pointer-types]
  Rinit.c:257:21: warning: assignment to 'blah5' {aka 'int (*)(const char *)'} from incompatible pointer type 'int (*)(char *)' [-Wincompatible-pointer-types]
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/rJava/rJava.Rcheck/00install.out' for details.
Found the following possibly unsafe calls:
File 'rJava/R/import.R':
  unlockBinding(IMPORTER, env = env)
  assignInNamespace(IMPORTER, importer, envir = env)
File 'rJava/R/jinit.R':
  unlockBinding(x, .env)
  unlockBinding(x, pe)
GNU make is a SystemRequirements.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  jri/src/Makefile
  jri/src/Makefile.win
  jri/src/win32/Makefile
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
Note: information on .o files for x64 is not available
File 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/rJava/rJava.Rcheck/rJava/libs/x64/rJava.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'rJava/libs/x64/rJava.dll':
  Found non-API call to R: 'R_GlobalContext'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Package required but not available: 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'matrixStats', 'infotheo', 'rlang', 'profvis', 'mclust',
  'foreach', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RJDemetra', 'knitr', 'kableExtra', 'magrittr'

Packages suggested but not available for checking: 'rmarkdown', 'ggdemetra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RJDemetra', 'plotrix', 'XLConnect'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gplots', 'abind'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'madness', 'coda', 'mvtnorm'

Package suggested but not available for checking: 'FSAdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'chopsticks'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'rJava', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'IRdisplay'
Packages required but not available: 'jsonlite', 'checkmate'

Packages suggested but not available for checking: 'testthat', 'reshape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'RUnit', 'rkafkajars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RKEAjars', 'rJava', 'tm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'downloader'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'XML', 'doParallel', 'foreach', 'gdata', 'RKEELjars',
  'RKEELdata', 'pmml', 'arules', 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LinkingTo' for
  'Rcpp' 'RcppEigen'
are unused as they have no 'include' directory
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'RcppEigen', 'RcppGSL'

Package suggested but not available for checking: 'lhs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'maptools', 'ggplot2', 'sp', 'rgeos'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gmp'

Packages suggested but not available for checking:
  'Hmisc', 'Biobase', 'genefilter', 'golubEsets', 'chemometrics'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgl', 'rSymPy', 'bio3d'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'dplyr', 'glue', 'stringr', 'httr', 'jsonlite', 'magrittr',
  'tidyr', 'purrr', 'rlang', 'urltools'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'stringi', 'ggplot2', 'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ape', 'circlize', 'ComplexHeatmap', 'reshape2', 'dplyr',
  'factoextra', 'FactoMineR', 'ggpubr', 'magrittr', 'stringr'

Package suggested but not available for checking: 'viridis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.cache', 'broom', 'ggplot2', 'tibble', 'magrittr', 'tidyr',
  'dplyr', 'lubridate', 'highcharter', 'jsonlite', 'keyring', 'httr',
  'PTXQC'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
':::' calls which should be '::':
  'stats:::dexp' 'stats:::dgamma' 'stats:::dweibull' 'stats:::pexp'
  'stats:::pgamma' 'stats:::pweibull' 'stats:::qexp' 'stats:::qgamma'
  'stats:::qweibull' 'stats:::rexp' 'stats:::rgamma' 'stats:::rweibull'
  See the note in ?`:::` about the use of this operator.
Package required but not available: 'plyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'cli', 'covr', 'crayon', 'glue', 'magrittr', 'pak', 'pillar',
  'rmarkdown', 'testthat', 'vctrs', 'withr'

Package which this enhances but not available for checking: 'winch'
Found the following significant warnings:
  internal/hash.c:142:16: warning: too many arguments for format [-Wformat-extra-args]
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/rlang/rlang.Rcheck/00install.out' for details.
Package unavailable to check Rd xrefs: 'glue'
'LazyData' is specified without a 'data' directory
Running examples in 'rlang-Ex.R' failed
The error most likely occurred in:

> ### Name: dyn-dots
> ### Title: Dynamic dots
> ### Aliases: dyn-dots tidy-dots
> 
> ### ** Examples
> 
> f <- function(...) {
+   out <- list2(...)
+   rev(out)
+ }
> 
> # Splice
> x <- list(alpha = "first", omega = "last")
> f(!!!x)
$omega
[1] "last"

$alpha
[1] "first"

> 
> # Unquote a name, showing both the `!!` bang bang and `{}` glue style
> nm <- "key"
> f(!!nm := "value")
$key
[1] "value"

> f("{nm}" := "value")
Error: Can't use `{` symbols in LHS of `:=` if glue is not installed.
Backtrace:
    x
 1. \-global::f(`:=`("{nm}", "value"))
 2.   \-rlang::list2(...)
Execution halted
Running 'sink.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # Workaround for loadNamespace() failure on R 3.2
  > requireNamespace("rlang")
  Loading required namespace: rlang
  > 
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'data.table', 'BH'

Packages suggested but not available for checking: 'tinytest', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'stringr', 'hwriter', 'jrc', 'plyr', 'R6'

Packages suggested but not available for checking:
  'magrittr', 'dplyr', 'tidyr', 'RColorBrewer', 'ggplot2', 'testthat',
  'httpuv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppProgress', 'doParallel', 'foreach', 'coda', 'gtools',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'MCMCpack', 'rmarkdown', 'RColorBrewer', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'emdbook'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'knitr', 'sp', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'covr'
Package required but not available: 'V8'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'doParallel', 'ggplot2', 'stabledist', 'reshape2', 'plyr',
  'Rdpack', 'Rcpp'

Packages suggested but not available for checking:
  'elliptic', 'spatstat.core', 'spatstat', 'testthat', 'stringi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'sf'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstantools', 'forecast', 'rstan', 'sn', 'StanHeaders', 'BH',
  'RcppEigen'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cowplot', 'patchwork', 'Rcpp', 'plyr', 'FNN', 'dplyr', 'ggrepel',
  'irlba', 'ica', 'Rtsne', 'ggplot2', 'riverplot', 'foreach',
  'doParallel', 'mclust', 'psych', 'RANN', 'uwot', 'rlang', 'hdf5r',
  'RcppArmadillo', 'RcppEigen', 'RcppProgress'

Packages suggested but not available for checking:
  'Seurat', 'knitr', 'reticulate', 'rmarkdown', 'testthat',
  'GenomicRanges', 'S4Vectors', 'IRanges', 'org.Hs.eg.db',
  'reactome.db', 'fgsea', 'AnnotationDbi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'XML', 'httpuv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'Rdpack', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'yaml', 'jsonlite', 'XML', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'stringdist', 'pipeR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tseries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantreg', 'stringr', 'magic', 'robustbase', 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doParallel', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'rstackdeque'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'lme4'

Packages which this enhances but not available for checking:
  'SemiPar', 'lmerTest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'randomForest'
Packages required but not available:
  'magrittr', 'abind', 'doParallel', 'foreach', 'khroma', 'Rcpp',
  'scatterplot3d', 'RcppArmadillo'

Packages suggested but not available for checking:
  'spelling', 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Luminescence', 'deSolve', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Luminescence', 'shiny', 'rhandsontable', 'data.table', 'googleVis',
  'shinydashboard', 'shinyjs', 'RCarb', 'rmarkdown', 'readxl', 'DT',
  'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'futile.logger'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'msm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GA', 'seriation'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'metafor', 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ma.filter: no visible global function definition for 'par'
ma.filter: no visible global function definition for 'lines'
ma.filter: no visible global function definition for 'abline'
qn: no visible global function definition for 'lm'
qn: no visible global function definition for 'var'
qn: no visible global function definition for 'resid'
ss.filter: no visible global function definition for 'smooth.spline'
ss.filter: no visible global function definition for 'par'
ss.filter: no visible global function definition for 'lines'
ss.filter: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline lines lm par resid smooth.spline var
Consider adding
  importFrom("graphics", "abline", "lines", "par")
  importFrom("stats", "lm", "resid", "smooth.spline", "var")
to your NAMESPACE file.
Packages required but not available: 'reticulate', 'ggplot2'

Packages suggested but not available for checking:
  'Seurat', 'readr', 'viridis', 'phateR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pryr', 'assertthat', 'rmarkdown', 'visNetwork'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'combinat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'inline'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geojsonio', 'geojsonlint', 'jsonlite', 'readr', 'sf', 'sp', 'V8'

Packages suggested but not available for checking:
  'knitr', 'magrittr', 'rgdal', 'rgeos', 'rmarkdown', 'testthat',
  'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'httr', 'jsonlite', 'maps', 'dplyr', 'assertthat',
  'geojsonio', 'tidyr', 'purrr', 'sp', 'rgdal', 'digest', 'maptools',
  'sf'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'rlang'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bit64', 'DBI', 'hms', 'lubridate', 'Rcpp', 'plogr'

Packages suggested but not available for checking:
  'covr', 'DBItest', 'rprojroot', 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'ggplot2', 'lubridate', 'dplyr', 'zoo', 'tidyr', 'plyr',
  'raster', 'lazyeval', 'rlang'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'knitr', 'yaml', 'htmltools', 'evaluate', 'jsonlite', 'tinytex',
  'xfun', 'stringr'

Packages suggested but not available for checking:
  'shiny', 'tufte', 'testthat', 'digest', 'dygraphs', 'vctrs',
  'tibble', 'fs', 'rsconnect', 'withr', 'bslib', 'sass'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'matrixcalc', 'msm', 'coda'

Package suggested but not available for checking: 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'R.methodsS3', 'R.oo', 'R.utils'

Package suggested but not available for checking: 'SparseM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'chron', 'date', 'vars'

Packages suggested but not available for checking:
  'RgoogleMaps', 'lubridate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pracma', 'gsl', 'magrittr', 'minpack.lm', 'Rdpack'

Packages suggested but not available for checking:
  'Rpvt', 'Rrelperm', 'knitr', 'rmarkdown', 'testthat', 'ggplot2',
  'dplyr', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rJava', 'yaml', 'ggplot2', 'gridExtra', 'reshape2', 'dplyr',
  'stringi', 'igraph', 'data.table'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'psych', 'RColorBrewer'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'plotrix', 'ggplot2', 'lme4', 'merTools',
  'pwr', 'AICcmodavg', 'pals'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reshape', 'pander', 'caret'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'RcppParallel', 'dplyr', 'purrr',
  'tibble', 'tidyr', 'Formula', 'BH', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'assertthat', 'rmarkdown'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'knitr', 'spelling', 'testthat', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'knitr', 'rmarkdown', 'bookdown', 'htmltools'

Packages suggested but not available for checking:
  'questionr', 'DT', 'palmerpenguins', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'knitr', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'knitr', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'rmarkdown', 'pkgdown', 'covr', 'spelling',
  'dplyr', 'DT', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rmarkdown', 'bookdown'

Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rmarkdown'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lavaan', 'e1071'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lpSolve', 'ggplot2'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'R.oo'
Packages required but not available:
  'rugarch', 'Rsolnp', 'zoo', 'xts', 'Bessel', 'ff', 'shape', 'pcaPP',
  'spd', 'Rcpp', 'corpcor', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'mltools', 'reticulate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plotrix', 'kknn', 'pls', 'mda', 'randomForest', 'adabag', 'party',
  'Cubist', 'kernlab', 'e1071', 'glmnet', 'xgboost'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rjson', 'R6', 'checkmate', 'Rcpp', 'rlang', 'rlist'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'stringr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'BH'

Packages suggested but not available for checking: 'testthat', 'tgp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ROC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

Packages suggested but not available for checking: 'latticeExtra', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rmixmod', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'uuid', 'RCurl', 'base64enc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'doParallel', 'foreach', 'RcppEigen', 'BH'

Packages suggested but not available for checking:
  'Rmixmod', 'blockcluster', 'testthat', 'RInside', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RMixtCompUtilities', 'RMixtCompIO', 'ggplot2', 'plotly', 'scales'

Packages suggested but not available for checking:
  'testthat', 'xml2', 'Rmixmod', 'blockcluster', 'knitr', 'ClusVis',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plotly', 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'testthat', 'xml2', 'RMixtCompIO', 'Rmixmod', 'blockcluster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
.pLGP_qvec: no visible global function definition for 'ppois'
.qLGP_pvec: no visible global function definition for 'qpois'
.rLGP.failsafe: no visible global function definition for 'runif'
.subdmg: no visible global function definition for 'dbinom'
dnegbin: no visible global function definition for 'dnbinom'
pLGP: no visible global function definition for 'ppois'
qLGP: no visible global function definition for 'qpois'
rLGP: no visible global function definition for 'rpois'
rLGP: no visible global function definition for 'rnorm'
rLGP: no visible global function definition for 'runif'
rbinegbin: no visible global function definition for 'rnbinom'
rmanaclash: no visible global function definition for 'rbinom'
rmanaclash: no visible global function definition for 'runif'
Undefined global functions or variables:
  dbinom dnbinom ppois qpois rbinom rnbinom rnorm rpois runif
Consider adding
  importFrom("stats", "dbinom", "dnbinom", "ppois", "qpois", "rbinom",
             "rnbinom", "rnorm", "rpois", "runif")
to your NAMESPACE file.
Packages required but not available: 'pracma', 'RSpectra'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RMOAjars', 'rJava'

Packages suggested but not available for checking: 'ff', 'recommenderlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'caret', 'e1071'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'magrittr', 'glue', 'pryr', 'digest'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'readr', 'stringr',
  'tidyr', 'dplyr', 'Nozzle.R1'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ecr', 'ggplot2', 'reshape2', 'dplyr', 'cdata', 'plotly'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'pkgbuild'
Invalid NAMESPACE file, parsing gives:
Error in packageVersion("gmp"): there is no package called 'gmp'

See section 'Package namespaces' in the 'Writing R Extensions' manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'AUC', 'Biobase', 'DESeq2', 'edgeR', 'limma', 'reshape', 'rlang',
  'splineTimeR', 'statmod'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'biglm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rms', 'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'Hmisc',
  'ggplot2', 'digest', 'knitr', 'loo', 'BH', 'RcppEigen', 'StanHeaders'

Package suggested but not available for checking: 'mice'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'fortunes'
Packages required but not available:
  'readr', 'purrr', 'magrittr', 'dplyr', 'tbl2xts',
  'PerformanceAnalytics', 'xts', 'zoo'

Packages suggested but not available for checking:
  'lubridate', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
rms.pval: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Hmisc', 'ggplot2', 'SparseM', 'quantreg', 'polspline', 'multcomp',
  'htmlTable', 'htmltools', 'digest'

Packages suggested but not available for checking:
  'plotly', 'knitr', 'mice', 'rmsb'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'Rata', 'reshape2', 'Rirt'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'psych', 'corpcor', 'doParallel', 'foreach'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
dWishartSpike: no visible global function definition for 'dnorm'
pWishartSpike: no visible global function definition for 'pnorm'
qWishartSpike: no visible global function definition for 'qnorm'
rWishartSpike: no visible global function definition for 'qnorm'
rmp: no visible global function definition for 'runif'
rtw: no visible global function definition for 'runif'
Undefined global functions or variables:
  dnorm pnorm qnorm runif
Consider adding
  importFrom("stats", "dnorm", "pnorm", "qnorm", "runif")
to your NAMESPACE file.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'bigmemory', 'RcppArmadillo', 'RcppEigen', 'RcppProgress',
  'BH'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'magrittr', 'pdp', 'purrr',
  'ranger', 'stringr', 'strucchange', 'tibble', 'viridis'

Packages suggested but not available for checking: 'testthat', 'openair'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'psychotools', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DBI'

Packages suggested but not available for checking:
  'RMariaDB', 'testthat', 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'dplyr', 'lubridate', 'stringr', 'purrr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'igraph', 'hot.deck', 'PoiClaClu', 'glmnet'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RRNA', 'circlize'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'assertthat', 'httptest', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RRNA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

Packages suggested but not available for checking: 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'sf'

Packages suggested but not available for checking:
  'rgdal', 'knitr', 'testthat', 'httr', 'devtools',
  'rnaturalearthdata', 'rnaturalearthhires', 'raster', 'rgeos'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'RJSONIO'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'covr', 'httptest', 'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maps', 'RColorBrewer', 'abind', 'fields', 'tgp', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'progress'

Packages suggested but not available for checking: 'testthat', 'ape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gaston', 'RcppParallel'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gaston', 'qtl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'igraph'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: 'bit64'
Packages unavailable to check Rd xrefs: 'bit64', 'pbdMPI'
Running 'RNetCDF-test.R'
Running the tests in 'tests/RNetCDF-test.R' failed.
Last 13 lines of output:
  Read NC_BYTE_0 ...OK
  OK
  Read NC_BYTE_int_0 ...OK
  OK
  Read NC_BYTE_fill_0 ...OK
  OK
  Read NC_BYTE_intfill_0 ...OK
  OK
  Read NC_BYTE_pack_0 ...OK
  OK
  Read NC_BYTE_intpack_0 ...OK
  OK
  Read NC_BYTE_pack64_0 ...Error in var.inq.nc(ncfile, variable) : NetCDF: Variable not found
  Calls: var.get.nc -> var.inq.nc
  Execution halted
Packages required but not available: 'rJava', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'tm', 'stringi', 'scales', 'wordcloud', 'data.table',
  'quanteda', 'Rcpp', 'RcppEigen', 'RcppProgress'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'XML', 'plyr', 'reshape2', 'httr', 'uuid', 'dplyr',
  'lazyeval', 'tidyr', 'stringr', 'stringi', 'xml2'

Packages suggested but not available for checking:
  'spelling', 'rdflib', 'geiger', 'phytools', 'knitr', 'rfigshare',
  'knitcitations', 'testthat', 'rmarkdown', 'rlang', 'xslt', 'covr',
  'taxadb'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'corpcor', 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'digest'

Packages suggested but not available for checking:
  'covr', 'RUnit', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
well19937.validate: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Packages required but not available: 'survey', 'rvest', 'xml2', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'covr', 'reportr', 'shades'

Packages which this enhances but not available for checking:
  'oro.nifti', 'tractor.base'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RNifti', 'ore', 'RcppEigen'

Packages suggested but not available for checking:
  'jpeg', 'loder', 'mmand', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glue', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nnls', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'base64enc', 'doParallel', 'foreach', 'igraph', 'impute',
  'MassSpecWavelet', 'ptw', 'signal', 'speaq', 'XML', 'ggplot2',
  'plotly', 'plyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sigmoid', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crul', 'lubridate', 'dplyr', 'tidyr', 'tidyselect', 'ggplot2',
  'scales', 'XML', 'xml2', 'jsonlite', 'rappdirs', 'gridExtra',
  'tibble', 'isdparser', 'geonames', 'hoardr', 'data.table'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'taxize', 'ncdf4', 'raster', 'leaflet',
  'rgdal', 'purrr', 'ggmap', 'vcr', 'webmockr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rvest', 'stringr', 'fields', 'GEOmap', 'MBA', 'RCurl', 'XML', 'uuid'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'data.table', 'sp', 'tibble', 'curl', 'raster',
  'rgdal', 'plyr', 'XML', 'magrittr'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'covr', 'knitr', 'markdown', 'rmarkdown',
  'RColorBrewer', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'rvest', 'xml2', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgdal', 'curl', 'jsonlite', 'lubridate', 'httr', 'zoo', 'ggmap',
  'ggplot2', 'sp', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'covr', 'lintr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'purrr', 'assertthat'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'lubridate', 'dplyr', 'tidyr', 'ggplot2', 'purrr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'dplyr', 'plyr', 'purrr', 'tibble', 'miniUI',
  'shiny', 'tidyr', 'rlang'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'knitr', 'covr', 'rmarkdown', 'rcrossref',
  'lintr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'scales', 'robustbase', 'magrittr', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rrcov', 'distr', 'distrEx', 'distrMod', 'RandVar', 'startupmsg'

Packages suggested but not available for checking: 'ROptEst', 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'robeth'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'pls', 'data.table', 'car', 'cvTools', 'e1071', 'fda',
  'rrcov', 'fpc', 'GGally', 'kernlab', 'mclust', 'sROC', 'tidyr',
  'robustbase', 'VIM', 'zCompositions', 'reshape2', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/imputation.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'robustbase', 'sfsmisc'
'library' or 'require' calls in package code:
  'robustbase' 'sfsmisc'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
.BuildPartial: no visible global function definition for 'as.formula'
.BuildPartial: no visible global function definition for 'residuals'
.PairwiseCorrelation : .Standardize : <anonymous>: no visible global
  function definition for 'na.omit'
.PairwiseCorrelation : .Standardize: no visible binding for global
  variable 'median'
.PairwiseCorrelation: no visible global function definition for
  'complete.cases'
.yw: no visible global function definition for 'toeplitz'
FastQn: no visible global function definition for 'median'
FastQn: no visible global function definition for 'mad'
fqn: no visible global function definition for 'median'
fqn: no visible global function definition for 'mad'
psdcor: no visible global function definition for 'posdefify'
psdcor: no visible global function definition for 'nearcor'
robar: no visible global function definition for 'frequency'
robcor: no visible global function definition for 'covMcd'
s_FastQn: no visible global function definition for 'median'
Undefined global functions or variables:
  as.formula complete.cases covMcd frequency mad median na.omit nearcor
  posdefify residuals toeplitz
Consider adding
  importFrom("stats", "as.formula", "complete.cases", "frequency", "mad",
             "median", "na.omit", "residuals", "toeplitz")
to your NAMESPACE file.
Packages unavailable to check Rd xrefs: 'robustbase', 'sfsmisc'
Packages required but not available: 'Rcpp', 'glmnet', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'forecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'distrMod', 'ROptEst', 'robustbase', 'evd', 'RobAStRDA', 'distr',
  'distrEx', 'RandVar', 'RobAStBase', 'startupmsg', 'actuar'

Packages suggested but not available for checking: 'RUnit', 'ismev'

Package which this enhances but not available for checking: 'fitdistrplus'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'foreach', 'doParallel', 'doRNG', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'lubridate', 'profvis', 'magrittr', 'dplyr', 'httr',
  'uuid'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'gprege', 'qpdf', 'ggplot2', 'networkD3', 'DescTools',
  'fdatest', 'gridExtra'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'dplyr', 'jsonlite', 'leaflet', 'ggplot2', 'tidyr',
  'httpcache', 'tibble', 'mapedit', 'sf', 'rlang'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'ggplot2', 'reshape2', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'distr', 'affy', 'Biobase', 'BiocGenerics', 'beadarray', 'RobLox',
  'distrMod', 'RColorBrewer', 'AnnotationDbi'

Packages suggested but not available for checking:
  'affydata', 'hgu95av2cdf', 'beadarrayExampleData',
  'illuminaHumanv3.db'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'distrMod', 'RobAStBase', 'RColorBrewer', 'Biobase', 'RandVar',
  'distr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'runjags', 'bridgesampling', 'rjags', 'coda', 'psych', 'extraDistr',
  'scales', 'DPQ', 'callr', 'Rdpack', 'BH'

Packages suggested but not available for checking:
  'ggplot2', 'rstan', 'metaBMA', 'testthat', 'vdiffr', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'robustbase', 'quantreg', 'shiny', 'sn'

Packages suggested but not available for checking:
  'dplyr', 'tidyr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fastGHQuad', 'bbmle', 'VGAM', 'actuar', 'Rcpp', 'numDeriv',
  'doParallel', 'foreach', 'doRNG'

Packages suggested but not available for checking:
  'R.rsp', 'robustbase', 'forward'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'flexmix', 'robustbase', 'gtools', 'robust', 'lars', 'dplyr',
  'rlang', 'scales', 'gplots', 'RColorBrewer', 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'igraph', 'markovchain', 'tm'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plm', 'dplyr', 'ggplot2', 'broom', 'tidyr', 'tibble'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'httr', 'spiderbar', 'future', 'future.apply', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'robustbase', 'quantreg', 'BB', 'rgenoud'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GSE', 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'magrittr', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ROptRegTS', 'distr', 'RandVar', 'RobAStBase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
RobRSVD: no visible global function definition for 'median'
Undefined global functions or variables:
  median
Consider adding
  importFrom("stats", "median")
to your NAMESPACE file.
Package unavailable to check Rd xrefs: 'svdvisual'
Packages required but not available: 'htmlwidgets', 'jsonlite'

Packages suggested but not available for checking:
  'gapminder', 'knitr', 'rmarkdown', 'readr', 'dplyr', 'tidyr',
  'lubridate', 'stringr'

Package which this enhances but not available for checking: 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fit.models', 'DEoptimR', 'pyinit', 'rrcov', 'robustbase', 'shiny',
  'shinyjs', 'PerformanceAnalytics', 'DT', 'ggplot2', 'gridExtra',
  'xts'

Packages suggested but not available for checking: 'knitr', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/ShinyUI.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'survey'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'clubSandwich', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'
Note: found 6 marked UTF-8 strings
Package required but not available: 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'splusTimeDate', 'splusTimeSeries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DEoptimR'

Packages suggested but not available for checking:
  'robust', 'fit.models', 'MPV', 'xtable', 'ggplot2', 'GGally',
  'RColorBrewer', 'reshape2', 'sfsmisc', 'catdata', 'doParallel',
  'foreach', 'skewt'

Packages which this enhances but not available for checking:
  'robustX', 'rrcov', 'matrixStats', 'quantreg', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'statip', 'rjags'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'Rcpp', 'numDeriv', 'mvtnorm', 'doParallel', 'foreach',
  'iterators', 'RcppArmadillo'

Package suggested but not available for checking: 'devtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RobustGaSP', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mclust', 'Rsolnp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rrcov'

Packages suggested but not available for checking: 'mclust', 'ellipse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'nloptr', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'perry', 'robustbase', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'lme4', 'ggplot2', 'robustbase', 'xtable', 'Rcpp', 'fastGHQuad',
  'RcppEigen', 'cubature'

Packages suggested but not available for checking:
  'digest', 'reshape2', 'microbenchmark', 'emmeans', 'estimability'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'matrixStats'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lmtest', 'robustbase', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
aggregateRanks: no visible binding for global variable 'median'
aggregateRanks: no visible global function definition for 'pnorm'
betaScores: no visible global function definition for 'pbeta'
correctBetaPvaluesExact: no visible binding for global variable 'qbeta'
thresholdBetaScore: no visible global function definition for 'pbeta'
Undefined global functions or variables:
  median pbeta pnorm qbeta
Consider adding
  importFrom("stats", "median", "pbeta", "pnorm", "qbeta")
to your NAMESPACE file.
Package required but not available: 'kyotil'

Packages suggested but not available for checking:
  'RUnit', 'VGAM', 'copula', 'mvtnorm', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'gmp', 'iterpc', 'quadprog', 'igraph', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fit.models', 'robustbase', 'rrcov'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'coda', 'mvtnorm', 'pscl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'limma', 'biomaRt', 'dplyr', 'ggplot2', 'reshape2', 'GGally',
  'ggrepel', 'RColorBrewer', 'gplots', 'ggpubr', 'cccd', 'rslurm',
  'Rtsne', 'igraph', 'scales', 'RANN', 'Rcpp'

Packages suggested but not available for checking:
  'GEOquery', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'robustbase'

Package which this enhances but not available for checking: 'ICS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'tidyr', 'scales'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'pROC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'lme4', 'carData', 'kutils'

Packages suggested but not available for checking: 'tables', 'Hmisc', 'car'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgl', 'EBImage'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'mime', 'progress'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'np', 'moments', 'nor1mix', 'spatstat.geom', 'spatstat', 'pbivnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/rococo.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reportROC', 'pROC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gplots'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgl', 'poibin'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'svmpath'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DiagrammeR', 'data.tree', 'ggplot2', 'flexsurv', 'Rcpp',
  'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RCurl'

Packages suggested but not available for checking:
  'data.tree', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'RODBC'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'numDeriv', 'quadprog', 'rootSolve', 'matrixcalc'

Package suggested but not available for checking: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'deSolve'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'xtable', 'rootSolve'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'ggplot2', 'dplyr', 'tidyr',
  'covr', 'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RODBC'

Packages suggested but not available for checking:
  'RODBC', 'mlbench', 'verification', 'PASWR', 'scatterplot3d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'globalOptTests'

Package suggested but not available for checking: 'Rglpk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R.utils', 'Rglpk', 'ROI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ROI'

Package suggested but not available for checking: 'Rglpk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'alabama'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'clpAPI', 'slam'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'Rcplex', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'DEoptim', 'DEoptimR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'ROI', 'ECOSolveR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'Rglpk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'kernlab', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'lpSolveAPI'

Package suggested but not available for checking: 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'ROI'

Package suggested but not available for checking: 'ROI.plugin.glpk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'xmlrpc2', 'xml2'

Package suggested but not available for checking: 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'nloptr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'optimx'

Packages suggested but not available for checking:
  'BB', 'ucminf', 'minqa', 'dfoptim', 'lbfgsb3c', 'lbfgs', 'subplex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'ROI', 'osqp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'ROI', 'Rcpp', 'checkmate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'ROI', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'ROI', 'scs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'Rsymphony', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'registry', 'slam'

Package suggested but not available for checking: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'magrittr', 'purrr', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'bookdown', 'jsonlite'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'magrittr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'testthat', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'checkmate', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'zoo', 'roll', 'microbenchmark',
  'RcppParallel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'roloc', 'colorspace'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'colorspace'

Packages suggested but not available for checking: 'ggplot2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'evd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'gtools', 'zoo', 'pracma', 'colorspace', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'foreach', 'ggplot2', 'glmnet', 'matrixcalc'

Packages suggested but not available for checking:
  'CompQuadForm', 'knitr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'httr', 'stringr', 'RODBC', 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'httr', 'jsonlite', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'brew'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'Lmoments'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R.methodsS3'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'iterators', 'foreach', 'doParallel', 'inflection'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'animation', 'rARPACK', 'igraph'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen', 'BH'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glue', 'magrittr', 'getPass', 'rstudioapi', 'stringr', 'git2r',
  'RCurl', 'XML', 'cli', 'pingr', 'withr', 'rlang', 'fs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pkgbuild'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RJSONIO', 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'RCurl', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'magrittr', 'knitr', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'RSelenium', 'dplyr', 'haven', 'magrittr', 'readr', 'rio', 'stringr',
  'tibble', 'tidyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fastdigest', 'CodeDepends', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'distr', 'distrEx', 'RandVar', 'evd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'distr', 'distrEx', 'distrMod', 'RandVar', 'RobAStBase', 'startupmsg'

Package suggested but not available for checking: 'RobLox'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'purrr', 'ggplot2', 'plotly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ROptEstOld', 'distr', 'distrEx', 'RandVar'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'Rdpack', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DBI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crul', 'httr', 'fauxpas', 'jsonlite', 'xml2', 'tibble', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rcrossref', 'handlr', 'httpuv', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rglpk', 'ggplot2', 'gridExtra', 'hitandrun'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'tree'
ROSE.eval: no visible global function definition for 'methods'
ROSE.eval: no visible binding for global variable 'model.frame'
ROSE.eval: no visible binding for global variable 'predict'
adj.formula: no visible global function definition for 'terms'
adj.formula: no visible global function definition for 'as.formula'
omnibus.balancing: no visible binding for global variable 'model.frame'
ou.sampl: no visible global function definition for 'rbinom'
over.sampl: no visible global function definition for 'rbinom'
roc.curve: no visible global function definition for 'lines'
roc.curve: no visible global function definition for 'abline'
rose.real: no visible binding for global variable 'sd'
rose.real: no visible global function definition for 'sd'
rose.real: no visible global function definition for 'rnorm'
rose.sampl: no visible global function definition for 'rbinom'
under.sampl: no visible global function definition for 'rbinom'
Undefined global functions or variables:
  abline as.formula lines methods model.frame predict rbinom rnorm sd
  terms
Consider adding
  importFrom("graphics", "abline", "lines")
  importFrom("stats", "as.formula", "model.frame", "predict", "rbinom",
             "rnorm", "sd", "terms")
  importFrom("utils", "methods")
to your NAMESPACE file.
Package unavailable to check Rd xrefs: 'pROC'
Unknown package 'DMwR' in Rd xrefs
Packages required but not available:
  'car', 'diptest', 'ggplot2', 'ggrepel', 'gridExtra', 'lavaan',
  'lme4', 'multcompView', 'pander', 'plyr', 'psych', 'pwr', 'rio',
  'rmdpartials', 'ufs', 'knitr', 'kableExtra', 'viridis'

Packages suggested but not available for checking:
  'GGally', 'GPArotation', 'jmvcore', 'MBESS', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'abind', 'jpeg', 'png', 'sp', 'rgdal', 'rjson', 'plyr',
  'prettymapr'

Packages suggested but not available for checking:
  'cartography', 'raster', 'testthat', 'covr', 'withr', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mrfDepth', 'robustbase', 'pcaPP', 'rrcov', 'rrcovHD', 'elasticnet',
  'mvtnorm', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rgl', 'viridisLite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridExtra', 'Rcpp', 'sphereplot', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'onion', 'orientlib', 'testthat', 'rmarkdown', 'rgl'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/rotations-intro.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GA', 'ftsa'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'assertthat', 'httr', 'jsonlite', 'rentrez', 'rncl'

Packages suggested but not available for checking:
  'fulltext', 'knitr', 'MCMCglmm', 'phylobase', 'readxl', 'rmarkdown',
  'RNeXML', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dint', 'R6'

Packages suggested but not available for checking:
  'covr', 'crayon', 'data.table', 'digest', 'rmarkdown', 'testthat',
  'uuid', 'ulid', 'zip'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
.computeValueReduct: no visible global function definition for 'combn'
.findAllReductsFromCore: no visible global function definition for
  'combn'
.findFirstReductsFromCore: no visible global function definition for
  'combn'
.findSmallestReductFamilyFromCore: no visible global function
  definition for 'combn'
Undefined global functions or variables:
  combn
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'geometry', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'covr', 'httr', 'magick', 'tinytest', 'tuneR'
Package unavailable to check Rd xrefs: 'magick'
Skipping vignette re-building
Packages suggested but not available for checking:
  'gmp', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'httpuv', 'assertthat', 'uuid', 'reqres', 'stringi', 'digest'

Packages suggested but not available for checking:
  'testthat', 'covr', 'fiery'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'roxygen2'

Packages suggested but not available for checking: 'tinytest', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'desc', 'devtools', 'enc', 'rex', 'rlang', 'tibble', 'usethis',
  'withr'

Packages suggested but not available for checking: 'rstudioapi', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'brew', 'commonmark', 'desc', 'digest', 'knitr', 'pkgload', 'purrr',
  'R6', 'Rcpp', 'rlang', 'stringi', 'stringr', 'xml2'

Packages suggested but not available for checking:
  'covr', 'devtools', 'rmarkdown', 'testthat', 'R.methodsS3', 'R.oo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'roxygen2'

Packages suggested but not available for checking:
  'testthat', 'tinytest', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nortest', 'moments'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bnlearn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plotly', 'data.table', 'scales', 'shiny'

Packages suggested but not available for checking:
  'covr', 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'mnormt', 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'agricolae'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'picante', 'ape', 'bipartite', 'coda', 'corpcor', 'deSolve',
  'fields', 'fpc', 'geiger', 'glassoFast', 'igraph', 'mvMORPH',
  'mvtnorm', 'phytools', 'pracma', 'pspline', 'pvclust', 'raster',
  'Rmpfr', 'TESS'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'tkrplot', 'rgl', 'sp', 'geoR', 'RandomFields', 'akima', 'denstrip',
  'sm', 'maps', 'colorspace', 'ggplot2'
Packages required but not available: 'XML', 'xml2', 'Seurat', 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'hash'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'earth'
Package unavailable to check Rd xrefs: 'earth'
Package unavailable to check Rd xrefs: 'tree'
evalMedian: no visible global function definition for 'xtabs'
evalMode: no visible global function definition for 'xtabs'
rpartScore: no visible global function definition for 'model.extract'
rpartScore: no visible global function definition for 'var'
rpartScore: no visible binding for global variable 'var'
splitAbs: no visible global function definition for 'xtabs'
Undefined global functions or variables:
  model.extract var xtabs
Consider adding
  importFrom("stats", "model.extract", "var", "xtabs")
to your NAMESPACE file.
Package suggested but not available for checking: 'RODBC'
Malformed Title field: should not end in a period.
'library' or 'require' call to 'RODBC' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
rpart.rules.push: no visible global function definition for 'sqlSave'
rpart.rules.table : <anonymous>: no visible global function definition
  for 'setNames'
rpart.subrules.table : <anonymous>: no visible global function
  definition for 'setNames'
Undefined global functions or variables:
  setNames sqlSave
Consider adding
  importFrom("stats", "setNames")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
Package required but not available: 'np'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'stringr', 'dplyr', 'combinat', 'xlsx'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'library' or 'require' calls to packages already attached by Depends:
  'MASS' 'survival'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'MASS' 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
GenerateData: no visible global function definition for 'mvrnorm'
GetVarImp : FitPenalizedModel: no visible global function definition
  for 'clogit'
Undefined global functions or variables:
  clogit mvrnorm
Package required but not available: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'chk', 'lifecycle'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rlang', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'minpack.lm', 'pracma', 'ptw'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'clusteval', 'mclust', 'clue'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RPEIF', 'RcppEigen'

Packages suggested but not available for checking: 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xts', 'zoo'

Packages suggested but not available for checking:
  'R.rsp', 'testthat', 'RobStatTM'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'zoo', 'RPEIF', 'RPEGLMEN', 'RobStatTM'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'Rcpp', 'mvtnorm', 'lifecycle', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'ggplot2', 'reshape2', 'gridExtra',
  'numDeriv', 'knitr', 'mirt', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'Rcpp', 'doBy', 'geiger', 'phylolm', 'phytools',
  'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'crul', 'jsonlite', 'gridBase', 'png'

Packages suggested but not available for checking:
  'testthat', 'vcr', 'knitr', 'rmarkdown', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'httr', 'rjson', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

Packages suggested but not available for checking:
  'testthat', 'htmltools', 'knitr', 'rmarkdown', 'devtools', 'dplyr',
  'data.table'

Package which this enhances but not available for checking: 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'crul', 'jsonlite', 'dplyr', 'plyr', 'lubridate',
  'reshape2', 'whisker', 'solrium'

Packages suggested but not available for checking:
  'xml2', 'knitr', 'rmarkdown', 'testthat', 'webmockr', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pcaPP', 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rbacon', 'Rcpp', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rlang'

Packages suggested but not available for checking:
  'dplyr', 'purrr', 'tidyr', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > #' @import testthat
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'jsonlite', 'httr', 'stringr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'R6', 'geometry', 'rgl', 'stringr', 'dplyr', 'XML', 'digest',
  'testthat', 'futile.logger', 'git2r'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xts', 'zoo'

Package suggested but not available for checking: 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'truncdist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RPostgreSQL', 'DBI', 'raster', 'rgeos', 'sp'

Packages suggested but not available for checking:
  'RPostgres', 'rgdal', 'wkb'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DBI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bit64', 'blob', 'DBI', 'hms', 'lubridate', 'Rcpp', 'withr', 'plogr'

Packages suggested but not available for checking:
  'callr', 'covr', 'DBItest', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'ssanv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantreg', 'limma', 'gam', 'gplots', 'ggplot2', 'Hmisc', 'Biobase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'foreach', 'iterators', 'cobs', 'imager', 'bmp',
  'jpeg', 'tiff', 'png', 'robustbase', 'quantreg'

Packages suggested but not available for checking:
  'timeDate', 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'readr', 'plyr', 'httr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'markdown', 'knitr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gamlss.dist', 'lme4', 'mvtnorm', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'stringr', 'readr', 'dygraphs', 'tuneR'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'dplyr', 'DT', 'dygraphs', 'magrittr', 'stringr',
  'quantmod', 'xts', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'dplyr', 'igraph', 'lazyeval'

Packages suggested but not available for checking:
  'testthat', 'graph', 'Rgraphviz', 'knitr', 'ggplot2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DBI', 'httr', 'openssl', 'jsonlite', 'stringi', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'dbplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'ggplot2', 'lazyeval', 'lubridate',
  'magrittr', 'tidyr'

Packages suggested but not available for checking:
  'flexsurv', 'flexsurvcure', 'knitr', 'rms', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'plyr', 'stringi', 'stringr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'readr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringi'

Packages suggested but not available for checking: 'testthat', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'binr', 'ClustOfVar', 'ggplot2', 'gridExtra', 'plyr', 'sqldf',
  'stringr'

Package suggested but not available for checking: 'ISLR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'knitr', 'lifecycle', 'mockr', 'rmarkdown', 'testthat',
  'withr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RCurl'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tableone'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geomorph', 'igraph', 'ape', 'matlab', 'Gmedian'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'randomForest', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'pbapply'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'httr', 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rvest', 'xml2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'Rdpack', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2', 'magrittr', 'ggpubr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reticulate', 'sf', 'raster', 'stringr', 'rmarkdown', 'magrittr',
  'purrr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'spData', 'rstudioapi', 'bookdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'wrapr', 'rquery', 'data.table'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'DBI', 'RSQLite', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'itertools', 'iterators'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr', 'ggplot2', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quantreg', 'regpro'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RPMG', 'RSEIS', 'GEOmap', 'MBA', 'minpack.lm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'zoo'

Packages suggested but not available for checking:
  'tinytest', 'rgl', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'meteor', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'wrapr'

Packages suggested but not available for checking:
  'DBI', 'RSQLite', 'rqdatatable', 'igraph', 'DiagrammeR', 'knitr',
  'rmarkdown', 'yaml', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'phylolm', 'ape'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'diagram'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lars', 'lassoshooting'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pbapply', 'warbleR', 'seewave', 'tuneR', 'NatureSounds'

Packages suggested but not available for checking:
  'knitr', 'vegan', 'dplyr', 'kableExtra', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RobStatTM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rrcov', 'robustbase', 'nnls'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rrcov', 'robustbase', 'norm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'robustbase', 'mvtnorm', 'pcaPP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'registry', 'knitr', 'ggplot2', 'Rcpp'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'RUnit'
Running 'runUnitTests.R'
Running the tests in 'tests/runUnitTests.R' failed.
Last 13 lines of output:
  > ##
  > ## with credits to package fUtilities in RMetrics
  > ## which credits Gregor Gojanc's example in CRAN package  'gdata'
  > ## as per the R Wiki http://wiki.r-project.org/rwiki/doku.php?id=developers:runit
  > ## and changed further by Martin Maechler
  > ## and more changes by Murray Stokely in HistogramTools
  > ##
  > ## Dirk Eddelbuettel, Jan 2014
  > 
  > stopifnot(require(RUnit, quietly=TRUE))
  Error: require(RUnit, quietly = TRUE) is not TRUE
  In addition: Warning message:
  In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
    there is no package called 'RUnit'
  Execution halted
Packages required but not available: 'crul', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'RPostgreSQL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'rlist', 'readr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'directlabels'

Packages suggested but not available for checking:
  'data.table', 'gridExtra', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'nleqslv', 'Rdpack', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2', 'ggtern', 'magrittr',
  'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lhs', 'sensitivity', 'ggplot2', 'digest', 'xlsx', 'doSNOW', 'rJava',
  'gridExtra', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'kernlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'RColorBrewer'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mc2d', 'eha', 'msm', 'tkrplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pcaPP', 'mvoutlier', 'glasso', 'matrixcalc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'zoo', 'biwavelet'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'httr', 'jsonlite', 'magrittr', 'tibble', 'tidyr', 'rlang',
  'purrr', 'glue', 'websocket', 'later', 'lifecycle'

Package suggested but not available for checking: 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'xml2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'vcr', 'ISOcodes', 'mockery'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'glmnet', 'lassoshooting', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'emmeans', 'ape', 'phytools', 'geiger', 'foreach', 'doParallel'

Packages suggested but not available for checking:
  'phangorn', 'rlist', 'scales', 'R.utils', 'RColorBrewer', 'car',
  'smatr', 'picante', 'vegan', 'ddpcr', 'geomorph', 'rmarkdown',
  'knitr', 'kableExtra', 'plotrix', 'pdftools', 'rgl', 'mvMORPH',
  'ggplot2', 'qpdf', 'inflection', 'Rvcg', 'Morpho', 'evolqg',
  'manipulate'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'ape', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dplyr', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'arm', 'coda', 'magic'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doParallel', 'foreach', 'lme4'

Packages suggested but not available for checking: 'knitr', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'magrittr', 'dplyr', 'ggplot2', 'plotly', 'GGally'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'readr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'matrixcalc', 'expm', 'ggplot2', 'magrittr', 'mvtnorm'

Packages suggested but not available for checking:
  'lazybar', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DEoptim', 'nloptr', 'abind'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2', 'reshape2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.methodsS3', 'R.oo', 'R.utils', 'R.cache', 'digest'

Packages suggested but not available for checking:
  'markdown', 'knitr', 'R.devices', 'base64enc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'ggplot2', 'officer', 'purrr', 'flextable', 'rvg',
  'magrittr', 'devEMF', 'moonBook', 'rmarkdown', 'shiny', 'editData',
  'shinyWidgets', 'ggpubr', 'rlang', 'readr', 'ztable'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sampling', 'samplingVarEst'

Packages suggested but not available for checking: 'markdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'simcdm', 'Rcpp', 'RcppArmadillo', 'rgen'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'robustbase'
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'robustbase' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
.computekappa: no visible global function definition for 'pnorm'
.computekappa: no visible global function definition for 'dnorm'
.initmethod : <anonymous>: no visible global function definition for
  'median'
.initmethod: no visible global function definition for 'model.matrix'
.mspe: no visible global function definition for 'rnorm'
.mspe : <anonymous>: no visible global function definition for 'rnorm'
makedata: no visible global function definition for 'rnorm'
makedata : addraneff: no visible global function definition for 'rnorm'
plot.meanssaemodel: no visible global function definition for 'par'
plot.meanssaemodel: no visible global function definition for 'lines'
plot.meanssaemodel: no visible global function definition for 'axis'
plot.meanssaemodel: no visible global function definition for 'grid'
plot.meanssaemodel: no visible global function definition for 'box'
plot.meanssaemodel: no visible global function definition for 'legend'
plot.meanssaemodel: no visible global function definition for 'arrows'
saemodel: no visible global function definition for 'model.frame'
saemodel: no visible global function definition for 'model.response'
saemodel: no visible global function definition for 'model.matrix'
summary.fitsaemodel: no visible global function definition for 'pt'
summary.fitsaemodel: no visible global function definition for
  'printCoefmat'
Undefined global functions or variables:
  arrows axis box dnorm grid legend lines median model.frame
  model.matrix model.response par pnorm printCoefmat pt rnorm
Consider adding
  importFrom("graphics", "arrows", "axis", "box", "grid", "legend",
             "lines", "par")
  importFrom("stats", "dnorm", "median", "model.frame", "model.matrix",
             "model.response", "pnorm", "printCoefmat", "pt", "rnorm")
to your NAMESPACE file.
Errors in running code in vignettes:
when running code in 'rsae.Rnw'
  ...

> fitsaemodel("huberm", bhfmodel, k = 1.2, init = "s")
Loading required package: robustbase
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'robustbase'

  When sourcing 'rsae.R':
Error: You cannot use 'lts' or 's', because the 
 'robustbase' package is not installed! 
Execution halted

  'rsae.Rnw' using 'UTF-8'... failed
Error(s) in re-building vignettes:
  ...
--- re-building 'rsae.Rnw' using Sweave
Loading required package: robustbase
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'robustbase'

Error: processing vignette 'rsae.Rnw' failed with diagnostics:
 chunk 26 
Error in .initmethod(model, control$init) : 
  You cannot use 'lts' or 's', because the 
 'robustbase' package is not installed! 


--- failed re-building 'rsae.Rnw'

SUMMARY: processing the following file failed:
  'rsae.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'DALEX', 'dendextend', 'ggplot2', 'ggpubr', 'ingredients', 'sets'

Packages suggested but not available for checking:
  'gbm', 'knitr', 'pander', 'randomForest', 'rmarkdown', 'spelling',
  'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'XML', 'sf', 'rgdal', 'magrittr', 'stringr', 'rlang',
  'tibble', 'processx'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'covr', 'terra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gstat', 'shapefiles', 'plyr', 'rgdal', 'stringr', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'maptools', 'rgeos'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'lubridate', 'ggplot2', 'hydroGOF', 'cvTools', 'mblm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SNPRelate', 'gdsfmt'

Packages suggested but not available for checking:
  'Rcpp', 'data.table', 'shiny', 'plotly', 'httr', 'biomaRt',
  'ggplot2', 'sp', 'packcircles', 'raster', 'mapplots', 'spdep',
  'rgdal', 'gdalUtils', 'rworldmap', 'doParallel', 'foreach', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'tibble', 'rlang', 'generics', 'tidyselect',
  'furrr', 'tidyr', 'vctrs', 'slider', 'ellipsis'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'rmarkdown', 'knitr', 'AmesHousing',
  'recipes', 'broom', 'xml2', 'covr', 'modeldata'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'lavaan', 'ggplot2', 'plyr', 'RColorBrewer', 'aplpack'

Packages suggested but not available for checking:
  'fields', 'rgl', 'qgraph', 'tkrplot', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'arules'

Package suggested but not available for checking: 'MultiOrd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rgdal', 'sp'

VignetteBuilder package required for checking but not installed: 'knitr'
stripslash: no visible global function definition for 'tail'
Undefined global functions or variables:
  tail
Consider adding
  importFrom("utils", "tail")
to your NAMESPACE file.
Packages required but not available:
  'httr', 'jsonlite', 'xml2', 'whisker', 'data.table'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'xml2', 'reshape2', 'lubridate', 'tidyr',
  'purrr', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gWidgets2', 'RGtk2', 'R2HTML', 'gWidgets2RGtk2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'testthat', 'devtools', 'rstudioapi', 'processx'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/rscala.Rnw'
(Is a VignetteBuilder field missing?)
'LazyData' is specified without a 'data' directory
Files named as vignettes but with no recognized vignette engine:
   'vignettes/rscala.Rnw'
(Is a VignetteBuilder field missing?)
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
    Failure with PATH environment variable.
    Success with rscala package directory.
    ... querying Scala specifics.
  
  Searching the system for SBT.
    Failure with rscala home directory.
    Failure with SBTCMD environment variable.
    Failure with SBT_HOME environment variable.
    Failure with PATH environment variable.
    Failure with rscala package directory.
    Failure with rscala temporary directory.
  
  
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'rJava', 'shiny', 'shinycssloaders', 'shinyjs', 'Metrics', 'ggplot2',
  'gridExtra'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'igraph', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'checkmate'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  cli.c:232:44: warning: passing argument 4 of 'setsockopt' from incompatible pointer type [-Wincompatible-pointer-types]
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/RSclient/RSclient.Rcheck/00install.out' for details.
Packages required but not available: 'rjson', 'rsconnect', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'digest', 'jsonlite', 'openssl', 'packrat', 'rstudioapi',
  'yaml'

Packages suggested but not available for checking:
  'RCurl', 'callr', 'httpuv', 'knitr', 'plumber', 'reticulate',
  'rmarkdown', 'shiny', 'sourcetools', 'testthat', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'httr', 'jsonlite', 'plyr', 'tidyr', 'dplyr', 'glue'

Packages suggested but not available for checking:
  'xml2', 'rvest', 'testthat', 'jpeg', 'knitr', 'rmarkdown', 'purrr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httr', 'jsonlite', 'lazyeval', 'magrittr', 'tidyselect',
  'tidyr', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'vctrs', 'dplyr', 'forcats', 'scales', 'stringr', 'rlang', 'purrr',
  'magrittr', 'tidyselect', 'tibble', 'RJSONIO', 'XML', 'ggplot2',
  'ggpolypath', 'reshape', 'glmnet', 'FactoMineR', 'princurve',
  'nloptr', 'sqldf', 'randomcoloR', 'labelled', 'kknn', 'e1071', 'gbm',
  'randomForest', 'neuralnet'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
convexhull: no visible global function definition for 'chull'
convexhull: no visible global function definition for 'rnorm'
drawcompletegraph: no visible global function definition for 'segments'
getbag: no visible global function definition for 'chull'
getbag: no visible global function definition for 'polygon'
getbag: no visible global function definition for 'points'
inflate: no visible global function definition for 'rnorm'
rsmed: no visible global function definition for 'runif'
rsplot: no visible global function definition for 'chull'
rsplot: no visible global function definition for 'polygon'
rsplot: no visible global function definition for 'points'
rsrings: no visible global function definition for 'chull'
rsrings: no visible global function definition for 'polygon'
rsrings: no visible global function definition for 'points'
rstinterval: no visible global function definition for 'runif'
rstinterval: no visible global function definition for 'rnorm'
rstinterval: no visible global function definition for 'chull'
rstinterval: no visible global function definition for 'polygon'
Undefined global functions or variables:
  chull points polygon rnorm runif segments
Consider adding
  importFrom("grDevices", "chull")
  importFrom("graphics", "points", "polygon", "segments")
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Packages required but not available: 'R6', 'XML', 'httr', 'plyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'roxygen2', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'hommel', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sybil', 'RBGL', 'graph'

Package suggested but not available for checking: 'Rgraphviz'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RPMG', 'Rwave'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'XML', 'caTools', 'openssl', 'httr', 'wdman', 'binman'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'Rcompression', 'covr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lavaan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'stringr', 'openNLP', 'NLP'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'RSclient'
Found the following significant warnings:
  RSserver.c:64:44: warning: passing argument 4 of 'setsockopt' from incompatible pointer type [-Wincompatible-pointer-types]
  qap_decode.c:200:41: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  qap_decode.c:200:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  qap_decode.c:238:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  qap_decode.c:238:55: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  qap_decode.c:244:39: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  qap_decode.c:244:60: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Rserve/Rserve.Rcheck/00install.out' for details.
Rserve: no visible global function definition for 'shortPathName'
Undefined global functions or variables:
  shortPathName
Consider adding
  importFrom("utils", "shortPathName")
to your NAMESPACE file.
GNU make is a SystemRequirements.
Note: information on .o files for x64 is not available
File 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Rserve/Rserve.Rcheck/Rserve/libs/x64/Rserve.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'rand', possibly from 'rand' (C)
  Found 'srand', possibly from 'srand' (C)
File 'Rserve/libs/x64/Rserve.dll':
  Found non-API calls to R: 'R_Interactive', 'Rf_initialize_R',
    'setup_Rmainloop'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Packages required but not available:
  'dplyr', 'rlang', 'igraph', 'purrr', 'tibble', 'minpack.lm',
  'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyr', 'ggplot2', 'ggraph'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
addNoisyCopies: no visible global function definition for 'rnorm'
eta: no visible global function definition for 'var'
gaussClassifier: no visible global function definition for 'runif'
getSigma: no visible global function definition for 'sd'
getSigma: no visible binding for global variable 'sd'
sfaClassify: no visible global function definition for 'rainbow'
sfaClassify: no visible global function definition for 'par'
sfaClassify: no visible global function definition for 'points'
sfaClassify: no visible global function definition for 'lines'
Undefined global functions or variables:
  lines par points rainbow rnorm runif sd var
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "lines", "par", "points")
  importFrom("stats", "rnorm", "runif", "sd", "var")
to your NAMESPACE file.
Packages required but not available:
  'bookdown', 'knitr', 'magrittr', 'rlang', 'usethis', 'yaml',
  'ymlthis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'MCMCpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'sn', 'VGAM', 'evd', 'RSQLite', 'DBI', 'foreach',
  'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'xtable', 'network'
Package unavailable to check Rd xrefs: 'xtable'
Packages required but not available: 'jpeg', 'fields', 'RANN'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'ggridges', 'ggplot2', 'knitr', 'rlang', 'scales'

Packages suggested but not available for checking:
  'covr', 'devtools', 'dplyr', 'eha', 'rmarkdown', 'rstpm2',
  'testthat', 'usethis', 'viridis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'httr', 'stringr', 'dplyr', 'lubridate'

Packages suggested but not available for checking:
  'aire.zmvm', 'testthat', 'covr', 'knitr', 'rmarkdown', 'ggplot2',
  'maps', 'mapproj', 'sp', 'ggmap', 'gstat', 'zoo', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'rgdal', 'rasterVis', 'ncdf4', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'httr', 'plyr', 'base64enc', 'digest', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'flexclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rstudioapi', 'berryFunctions'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'edfReader', 'jsonlite', 'ggplot2', 'signal', 'phonTools', 'psd'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'stringi', 'plyr', 'magrittr', 'tokenizers'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'whisker'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ggplot2', 'gridExtra'

Package suggested but not available for checking: 'mlxR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'estimability'

Packages suggested but not available for checking:
  'emmeans', 'Vdgraph', 'conf.design', 'DoE.base', 'FrF2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'scatterplot3d', 'NeuralNetTools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'stringr', 'crul', 'data.table', 'jsonlite', 'RJSONIO',
  'httr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'mime', 'plyr'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'readr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'memoise'

Packages suggested but not available for checking: 'testthat', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'truncnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BiocGenerics', 'restfulr', 'graph', 'S4Vectors', 'rjson', 'XML',
  'RCurl'

Packages suggested but not available for checking: 'nycflights13', 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'validate', 'lintools'

Packages suggested but not available for checking: 'editrules', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'spatialEco', 'geosphere', 'tigris', 'raster', 'sp',
  'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sparklyr', 'h2o'

Packages suggested but not available for checking: 'dplyr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'data.table', 'float', 'RhpcBLASctl', 'lgr', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'INLA', 'testthat', 'rgdal'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'plyr', 'httr', 'jsonlite', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'foreach', 'doParallel', 'igraph', 'tidyr', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bit64', 'blob', 'DBI', 'memoise', 'pkgconfig', 'Rcpp', 'plogr'

Packages suggested but not available for checking:
  'DBItest', 'gert', 'gh', 'knitr', 'rmarkdown', 'hms', 'rvest',
  'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'stringi'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lgr', 'R6', 'DBI', 'RSQLite', 'knitr'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'testthat', 'covr', 'lintr', 'pkgdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SIS', 'GMMAT'

Package suggested but not available for checking: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ncdf4', 'zoo', 'stringr', 'EcoHydRology', 'dplyr', 'gsubfn', 'yaml',
  'mise', 'reshape2', 'qmap', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'Deriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'LearnBayes'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'svd', 'forecast'

Packages suggested but not available for checking:
  'testthat', 'RSpectra', 'PRIMME'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'gridExtra'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'kernlab', 'quadprog', 'dplyr', 'tidyr', 'ggplot2',
  'reshape2', 'scales', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'SparseM', 'numDeriv', 'LiblineaR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'R6'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'crayon', 'magrittr', 'jsonlite'

Packages suggested but not available for checking:
  'covr', 'testthat', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'bayesplot', 'ggplot2', 'lme4', 'loo', 'rstan', 'rstantools',
  'shinystan', 'RcppParallel', 'StanHeaders', 'BH', 'RcppEigen'

Packages suggested but not available for checking:
  'betareg', 'data.table', 'digest', 'gridExtra', 'HSAUR3', 'knitr',
  'rmarkdown', 'roxygen2', 'StanHeaders', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'magrittr', 'dplyr', 'tidyr', 'purrr',
  'ggplot2', 'StanHeaders', 'BH', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'StanHeaders', 'ggplot2', 'inline', 'gridExtra', 'Rcpp',
  'RcppParallel', 'loo', 'pkgbuild', 'withr', 'V8', 'RcppEigen', 'BH'

Packages suggested but not available for checking:
  'RUnit', 'RcppEigen', 'BH', 'shinystan', 'bayesplot', 'rmarkdown',
  'rstantools', 'rstudioapi', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'desc', 'Rcpp', 'RcppParallel'

Packages suggested but not available for checking:
  'rstan', 'usethis', 'testthat', 'knitr', 'pkgbuild', 'pkgload',
  'roxygen2', 'rmarkdown', 'rstudioapi'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'abind', 'bayesplot', 'ggplot2', 'lme4', 'loo', 'rstan',
  'rstantools', 'pracma', 'dplyr', 'StanHeaders', 'BH', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'digest', 'knitr', 'rmarkdown', 'pkgdown', 'fields'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'tidyr', 'purrr', 'broom', 'rlang', 'tibble', 'dplyr', 'magrittr',
  'corrplot', 'tidyselect', 'car', 'generics'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggpubr', 'emmeans', 'coin', 'testthat',
  'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Errors in running code in vignettes:
when running code in 'rstiefel.Rnw'
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  'rstiefel.Rnw'... failed to complete the test
Packages required but not available: 'httr', 'jsonlite', 'curl', 'keyring'

Packages suggested but not available for checking:
  'knitr', 'rstudioapi', 'dplyr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'caret', 'sp', 'XML', 'geosphere', 'ggplot2', 'reshape2',
  'rgeos', 'rgdal', 'doParallel', 'foreach', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'randomForest', 'kernlab', 'e1071', 'gridExtra', 'pls', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'Rcpp', 'xml2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'bbmle', 'fastGHQuad', 'deSolve', 'RcppArmadillo', 'BH'

Packages suggested but not available for checking:
  'eha', 'testthat', 'ggplot2', 'readstata13', 'mstate', 'scales',
  'survPen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'RCurl', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'clipr'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'logging', 'devtools', 'roxygen2', 'git2r', 'jsonlite', 'processx',
  'httr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plotly', 'rsm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'gdata'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'epitools', 'epiR', 'mc2d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'colorspace', 'inlmisc', 'MBA', 'raster', 'rgdal', 'rgeos', 'sp'

Packages suggested but not available for checking:
  'dichromat', 'leaflet', 'rgl', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'ggplot2', 'testthat'
Package unavailable to check Rd xrefs: 'ggplot2'
Running examples in 'rsvd-Ex.R' failed
The error most likely occurred in:

> ### Name: rpca
> ### Title: Randomized principal component analysis (rpca).
> ### Aliases: rpca
> 
> ### ** Examples
> 
> 
> library('rsvd')
> #
> # Load Edgar Anderson's Iris Data
> #
> data('iris')
> 
> #
> # log transform
> #
> log.iris <- log( iris[ , 1:4] )
> iris.species <- iris[ , 5]
> 
> #
> # Perform rPCA and compute only the first two PCs
> #
> iris.rpca <- rpca(log.iris, k=2)
> summary(iris.rpca) # Summary
                         PC1   PC2
Explained variance     2.933 0.907
Standard deviations    1.712 0.952
Proportion of variance 0.733 0.227
Cumulative proportion  0.733 0.960
> print(iris.rpca) # Prints the rotations
Standard deviations:
[1] 1.712 0.952

Eigenvalues:
[1] 2.933 0.907

Rotation:
                PC1    PC2
Sepal.Length -0.504 -0.455
Sepal.Width   0.302 -0.889
Petal.Length -0.577 -0.034
Petal.Width  -0.567 -0.035
> 
> #
> # Use rPCA to compute all PCs, similar to \code{prcomp}
> #
> iris.rpca <- rpca(log.iris)
> summary(iris.rpca) # Summary
                         PC1   PC2   PC3   PC4
Explained variance     2.933 0.907 0.133 0.027
Standard deviations    1.712 0.952 0.365 0.166
Proportion of variance 0.733 0.227 0.033 0.007
Cumulative proportion  0.733 0.960 0.993 1.000
> print(iris.rpca) # Prints the rotations
Standard deviations:
[1] 1.712 0.952 0.365 0.166

Eigenvalues:
[1] 2.933 0.907 0.133 0.027

Rotation:
                PC1    PC2    PC3    PC4
Sepal.Length  0.504 -0.455  0.709  0.191
Sepal.Width  -0.302 -0.889 -0.331 -0.091
Petal.Length  0.577 -0.034 -0.219 -0.786
Petal.Width   0.567 -0.035 -0.583  0.580
> plot(iris.rpca) # Produce screeplot, variable and individuls factor maps.
Error: The package 'ggplot2' is needed for this function to work. Please install it.
Execution halted
Malformed Title field: should not end in a period.
Skipping vignette re-building
Packages suggested but not available for checking:
  'spelling', 'svglite', 'magick', 'webp', 'ggplot2', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'rsvg-Ex.R' failed
The error most likely occurred in:

> ### Name: rsvg
> ### Title: Render SVG into Bitmap
> ### Aliases: rsvg rsvg_raw rsvg_webp rsvg_png rsvg_pdf rsvg_svg rsvg_ps
> 
> ### ** Examples
> 
> # create some svg
> options(example.ask=FALSE)
> tmp <- tempfile()
> svglite::svglite(tmp, width = 10, height = 7)
Error in loadNamespace(x) : there is no package called 'svglite'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'spelling.R'
Running the tests in 'tests/spelling.R' failed.
Complete output:
  > spelling::spell_check_test(vignettes = TRUE, error = FALSE)
  Error in loadNamespace(x) : there is no package called 'spelling'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Running examples in 'RSVGTipsDevice-Ex.R' failed
The error most likely occurred in:

> ### Name: RSVGTipsDevice
> ### Title: A SVG Graphics Driver with dynamic tips
> ### Aliases: RSVGTipsDevice
> ### Keywords: device package
> 
> ### ** Examples
> 
> library("RSVGTipsDevice")
> sessionInfo()
R Under development (unstable) (2021-04-23 r80216)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows Server x64 (build 14393)

Matrix products: default

locale:
[1] LC_COLLATE=C                          
[2] LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] RSVGTipsDevice_1.0-7

loaded via a namespace (and not attached):
[1] compiler_4.2.0
> devSVGTips("svgplot1.svg", toolTipMode=1,
+     title="SVG example plot 1: Shapes and Points, Tooltips are Title + 1 Line")
> plot(c(0,10),c(0,10), type="n", xlab="x", ylab="y",
+     main="Example SVG plot with title + 1 line tips (mode=1)")
> setSVGShapeToolTip(title="A rectangle", desc="that is yellow")
> rect(1,1,4,6, col='yellow')
> setSVGShapeToolTip(title="1st circle with title only")
> points(5.5,7.5,cex=20,pch=19,col='red')
> setSVGShapeToolTip(title="A triangle", desc="big and green")
> polygon(c(3,6,8), c(3,6,3), col='green')
> # no tooltips on these points
> points(2:8, 8:2, cex=3, pch=19, col='black')
> # tooltips on each these points
> invisible(sapply(1:7, function(x)
+ {setSVGShapeToolTip(title=paste("point", x))
+  points(x+1, 8-x, cex=3, pch=1, col='black')}))
> setSVGShapeToolTip(title="Text", desc="can have a tool tip too!")
> text(x=4, y=9, lab="Poke me!", col="blue")
> dev.off()
Packages required but not available: 'ggplot2', 'dplyr', 'downloader'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages which this enhances but not available for checking:
  'slam', 'SparseM'
Packages unavailable to check Rd xrefs: 'lpSolve', 'Rglpk'
Package required but not available: 'rJython'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'RSQLite', 'raster'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'ggplot2', 'Rcpp', 'rgdal', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'tidyselect', 'stringi', 'digest', 'rlang', 'magrittr',
  'tokenbrowser', 'base64enc', 'png', 'data.table'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'partitions', 'aster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'htmltools'

Packages suggested but not available for checking:
  'dplyr', 'tibble', 'tidyr', 'testthat', 'xml2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'matrixStats', 'vegan', 'Rcpp', 'testthat'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
barplot.rtconnect: no visible global function definition for 'rainbow'
barplot.rtconnect: no visible global function definition for 'text'
plot.rtconnect: no visible global function definition for 'par'
plot.rtconnect: no visible global function definition for 'axis.Date'
rtconnect: no visible global function definition for 'read.table'
Undefined global functions or variables:
  axis.Date par rainbow read.table text
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "axis.Date", "par", "text")
  importFrom("utils", "read.table")
to your NAMESPACE file.
Packages required but not available:
  'jsonlite', 'htmlwidgets', 'geojsonsf', 'data.table', 'purrr'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'knitr', 'covr', 'dplyr', 'sf', 'rgeos',
  'rnaturalearth'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'tseries'
Running 'test-EPD.R'
  Running 'test-EUstockmarket.R'
Running the tests in 'tests/test-EUstockmarket.R' failed.
Complete output:
  > data(EuStockMarkets)
  > 
  > 
  > library(RTDE)
  Loading required package: parallel
  > library(tseries)
  Error in library(tseries) : there is no package called 'tseries'
  Execution halted
Packages required but not available: 'evd', 'msm', 'gsl', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'glba', 'knitr', 'rmarkdown', 'dplyr', 'tidyr', 'purrr',
  'latticeExtra', 'binom', 'RWiener'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readr', 'httr', 'dplyr', 'jsonlite', 'RcppMsgPack', 'urltools',
  'uuid', 'purrr'

Packages suggested but not available for checking:
  'testthat', 'mockery', 'openssl', 'webmockr', 'devtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'RCurl', 'plyr', 'gdata'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tm', 'NLP', 'slam', 'FactoMineR', 'explor', 'testthat', 'wordcloud',
  'igraph', 'stringi', 'crayon', 'SnowballC', 'tm.plugin.factiva',
  'tm.plugin.lexisnexis', 'tm.plugin.europresse', 'tm.plugin.alceste'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'knitr', 'rmarkdown', 'bookdown', 'DT', 'ggplot2', 'xfun'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
LazyData DB of 5.7 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
Package suggested but not available for checking: 'rNOMADS'
Packages required but not available:
  'stringb', 'R6', 'hellno', 'magrittr', 'Rcpp', 'digest', 'RSQLite'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'SparseM', 'randomForest', 'tree', 'tm', 'e1071', 'ipred', 'caTools',
  'glmnet', 'tau'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
plotGLCM: no visible global function definition for 'points'
Undefined global functions or variables:
  points
Consider adding
  importFrom("graphics", "points")
to your NAMESPACE file.
Packages required but not available: 'R.oo', 'R.methodsS3'

Packages suggested but not available for checking:
  'ggplot2', 'xtable', 'gsubfn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'logger', 'dplyr'

Packages suggested but not available for checking: 'ggplot2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rmarkdown', 'knitr', 'yaml', 'tinytex', 'xfun'

Packages suggested but not available for checking:
  'testit', 'bookdown', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'glue', 'magrittr', 'purrr', 'readr', 'rlang',
  'stringr', 'tibble', 'tidymv', 'tidyr', 'tidyverse', 'tidyselect'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'abind', 'chk', 'dttr2', 'tibble'

Packages suggested but not available for checking:
  'ggplot2', 'scales', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DataCombine', 'DescTools', 'deSolve', 'dplyr', 'ggplot2',
  'gridExtra', 'interactions', 'lme4', 'mclust', 'plyr', 'zoo'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown', 'sjmisc', 'sjPlot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'sys', 'rappdirs', 'digest'

Packages suggested but not available for checking:
  'jsonlite', 'xml2', 'testthat', 'knitr', 'rmarkdown', 'covr',
  'magrittr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'changepoint', 'dplyr', 'fs', 'ggplot2', 'knitr', 'lazyeval',
  'lubridate', 'R6', 'rbokeh', 'readr', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'DT', 'rmarkdown', 'shiny', 'testthat', 'xtable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'mvtnorm', 'plyr', 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'inline'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'zoo', 'xts', 'magrittr', 'tibble', 'dplyr', 'tidyr', 'ggplot2',
  'httr', 'stringr', 'purrr', 'lubridate', 'timetk',
  'PerformanceAnalytics', 'tibbletime', 'quantmod', 'forecast',
  'tidyquant', 'readr', 'Quandl', 'fitdistrplus', 'tsibble', 'feasts',
  'fabletools', 'jsonlite', 'sp', 'RCurl', 'rugarch', 'lpSolve',
  'rlang'

Package suggested but not available for checking: 'plotly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'data.table', 'loo', 'matrixcalc', 'stringr', 'truncnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'dplyr', 'getPass', 'glue', 'httr', 'keyring', 'magrittr',
  'purrr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RPMG', 'GEOmap', 'RSEIS', 'splancs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'gstat'

Packages suggested but not available for checking:
  'intamap', 'rgeos', 'spacetime', 'data.table', 'rgdal', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reticulate', 'jsonlite', 'rstudioapi'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'Hmisc', 'openxlsx', 'pbapply', 'randomForest', 'raster',
  'readxl', 'rgeos', 'rjson', 'sp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'future', 'future.apply', 'Rcpp'

Packages suggested but not available for checking:
  'data.table', 'ggplot2', 'gridExtra', 'knitr', 'quantmod',
  'rmarkdown', 'testthat', 'vars', 'xts', 'zoo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'stringr'

Packages suggested but not available for checking:
  'askpass', 'knitr', 'rmarkdown', 'testthat', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'jsonlite', 'xml2', 'rvest', 'jpeg', 'purrr',
  'ggplot2', 'memoise', 'tibble', 'tidyr', 'downloader'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'leaflet', 'showtext',
  'sysfonts', 'trekfont', 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lubridate', 'dplyr', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'geometry'
Running 'attributes.R'
  Comparing 'attributes.Rout' to 'attributes.Rout.save' ... OK
  Running 'basic.R'
  Comparing 'basic.Rout' to 'basic.Rout.save' ... OK
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'
Packages required but not available: 'Rcpp', 'RcppParallel'

Packages suggested but not available for checking:
  'covr', 'knitr', 'R.rsp', 'rmarkdown', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'quantmod', 'zoo', 'alfred', 'Quandl', 'anytime',
  'data.table', 'mongolite', 'brotli', 'curl'

Package suggested but not available for checking: 'RQuantLib'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'irlba', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R6'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'quantmod', 'zoo', 'RColorBrewer'

Package suggested but not available for checking: 'TTR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'raster', 'xts', 'zoo', 'RCurl'

Package suggested but not available for checking: 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'RStoolbox', 'moveVis', 'raster', 'dplyr', 'pbapply',
  'sp', 'sf', 'tidyr', 'assertthat'

Package suggested but not available for checking: 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'shiny', 'shinydashboard', 'rmarkdown', 'DT',
  'shinyBS', 'shinyjs', 'ggthemes', 'plotly', 'rlang', 'FSelector',
  'officer', 'colourpicker', 'tidyr', 'devtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'magrittr', 'tibble', 'progress', 'Rcpp',
  'httpuv'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'magick', 'openssl', 'readr', 'rmarkdown',
  'testthat', 'webshot', 'covr', 'igraph'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'glue', 'httr', 'jsonlite', 'lubridate',
  'purrr', 'rlang', 'tibble', 'tidyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'gtools', 'magrittr', 'Rcpp', 'readr', 'rlang', 'stringr',
  'tibble', 'tidyr', 'RcppParallel'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'KFAS'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'dtw', 'rbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rsolnp', 'nloptr', 'ks', 'numDeriv', 'spd', 'xts', 'zoo', 'chron',
  'SkewHyperbolic', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Packages suggested but not available for checking: 'udpipe', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'actuar', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'keyholder', 'rlang', 'tibble', 'tidyr', 'magrittr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'parsnip', 'purrr', 'rlang', 'tibble', 'dials', 'tidyr', 'dplyr',
  'stringr', 'generics'

Packages suggested but not available for checking:
  'testthat', 'C50', 'Cubist', 'xrf', 'covr', 'modeldata', 'spelling',
  'recipes', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maxLik', 'highfrequency', 'roll', 'xts', 'tseries', 'Rdpack',
  'lubridate', 'zoo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'doParallel', 'foreach'

Packages suggested but not available for checking: 'xml2', 'rvest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'XML'
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Package required but not available: 'coda'

Packages suggested but not available for checking:
  'rjags', 'modeest', 'testthat', 'knitr', 'markdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bigassertr', 'urltools'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'rbenchmark', 'cowplot', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'run_testthat.R'
Running the tests in 'tests/run_testthat.R' failed.
Last 13 lines of output:
  > if(! require("testthat", quietly=TRUE)) {
  +   message("\nCannot run unit tests -- package 'testthat' is not available!\n")
  + }
  
  Cannot run unit tests -- package 'testthat' is not available!
  
  Warning message:
  In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
    there is no package called 'testthat'
  > 
  > ## run testthat tests
  > test_check("Runuran", reporter=c("summary","check","fail"))
  Error in test_check("Runuran", reporter = c("summary", "check", "fail")) : 
    could not find function "test_check"
  Execution halted
Packages required but not available:
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  'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggforce', 'ggplot2', 'reshape2', 'shiny', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
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  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Package suggested but not available for checking: 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'ruv', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales', 'gridExtra'

Packages suggested but not available for checking: 'shiny', 'colourpicker'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'vegan'

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  'ordinal', 'RGCCA', 'statmod'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'ComplexHeatmap', 'GSEABase', 'circlize', 'dplyr', 'ggplot2',
  'ggpubr', 'gridExtra', 'haven', 'msigdbr', 'plotly', 'purrr',
  'rWikiPathways', 'stringr', 'tibble', 'tidyr', 'XML', 'rlang'

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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'Morpho', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'BiocManager', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggforce', 'ggplot2', 'magrittr', 'purrr', 'rlang', 'vegan',
  'pheatmap'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'mockery', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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  'spelling', 'stringi', 'testthat', 'webfakes'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Package which this enhances but not available for checking: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'jsonlite', 'httr', 'stringr', 'lgr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'locfit', 'assertthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LinkingTo' for 'Rcpp' is unused as it has no 'include' directory
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Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'CompQuadForm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'spls', 'pls'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking: 'plotly', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'Rcpp'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'htmltools'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/RWinEdt/RWinEdt.Rcheck/00install.out' for details.
File
  LICENSE
is not mentioned in the DESCRIPTION file.
Package required but not available: 'lazyeval'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'sp', 'raster', 'units'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'jiebaR', 'coreNLP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 426306 marked UTF-8 strings
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'jsonlite', 'lubridate', 'magrittr', 'purrr', 'httr', 'stringr',
  'tibble', 'zoo'

Packages suggested but not available for checking:
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  'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'ggdendro', 'GGally'

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VignetteBuilder package required for checking but not installed: 'knitr'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'mvtnorm', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'jpeg', 'png', 'RJSONIO'

Package suggested but not available for checking: 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'kappalab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'httr', 'dplyr', 'tibble'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'PreciseSums', 'Rcpp', 'assertthat', 'backports', 'checkmate', 'cli',
  'dparser', 'ggplot2', 'inline', 'lotri', 'magrittr', 'memoise',
  'rex', 'qs', 'sys', 'RcppEigen', 'RcppArmadillo', 'sitmo',
  'StanHeaders', 'BH'

Packages suggested but not available for checking:
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  'dplyr', 'ggrepel', 'gridExtra', 'htmltools', 'knitr', 'learnr',
  'microbenchmark', 'remotes', 'rlang', 'rmarkdown', 'scales', 'shiny',
  'stringi', 'symengine', 'testthat', 'tidyr', 'usethis', 'vdiffr',
  'xgxr', 'pillar', 'tibble', 'units', 'rsconnect', 'devtools',
  'patchwork'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lars', 'ellipse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'settings', 'xml2'

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  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'testthat', 'unix', 'Rmpfr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'magrittr', 'dplyr', 'tidyr', 'purrr', 'stringr'

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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'RCurl', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'stringr', 'purrr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'stringr', 'car'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'RJSONIO', 'reshape2', 'RCurl'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'magrittr', 'dplyr', 'lubridate', 'purrr',
  'data.table'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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VignetteBuilder package required for checking but not installed: 'knitr'

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  'NbClust', 'ncdf4', 'plyr', 'SpecsVerification'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'ClimProjDiags', 'plyr', 'ncdf4', 'multiApply'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.tree', 'jsonlite', 'Trading'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'testit', 'R6'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
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(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'pbapply', 'Rcpp', 'spdep', 'RcppArmadillo'

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fit.saery.AR1: no visible global function definition for 'qnorm'
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fit.saery.indep: no visible global function definition for 'qnorm'
mse.saery.boot.AR1.typeI: no visible global function definition for
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mse.saery.boot.AR1.typeI: no visible global function definition for
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mse.saery.boot.AR1.typeII: no visible global function definition for
  'rnorm'
mse.saery.boot.AR1.typeII: no visible global function definition for
  'write.table'
mse.saery.boot.MA1.typeI: no visible global function definition for
  'rnorm'
mse.saery.boot.MA1.typeI: no visible global function definition for
  'write.table'
mse.saery.boot.MA1.typeII: no visible global function definition for
  'rnorm'
mse.saery.boot.MA1.typeII: no visible global function definition for
  'write.table'
plot.saery: no visible global function definition for 'devAskNewPage'
plot.saery: no visible global function definition for 'par'
plot.saery: no visible global function definition for 'abline'
plot.saery: no visible global function definition for 'title'
plot.saery: no visible global function definition for 'axis'
plot.saery: no visible global function definition for 'lines'
plot.saery: no visible global function definition for 'legend'
pvalue: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  abline axis devAskNewPage legend lines par pnorm qnorm rnorm title
  write.table
Consider adding
  importFrom("grDevices", "devAskNewPage")
  importFrom("graphics", "abline", "axis", "legend", "lines", "par",
             "title")
  importFrom("stats", "pnorm", "qnorm", "rnorm")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Packages required but not available:
  'dplyr', 'functional', 'ggplot2', 'spdep', 'parallelMap'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'caTools', 'EBImage', 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lpSolveAPI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readxl', 'jsonlite', 'chron', 'curl', 'sf', 'igraph'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ape'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sodium', 'base64enc', 'assertthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 3 marked Latin-1 strings
Packages required but not available:
  'dplyr', 'htmlwidgets', 'purrr', 'stringr', 'jsonlite', 'shiny',
  'magrittr', 'DT', 'shinyjs', 'rmarkdown', 'rlang', 'tibble', 'haven',
  'shinyWidgets', 'tidyr', 'shinybusy'

Packages suggested but not available for checking:
  'testthat', 'shinytest', 'knitr', 'ggplot2', 'plotly'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'MixSim', 'mclust', 'lowmemtkmeans', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'glmnet', 'glasso'
Running examples in 'sAIC-Ex.R' failed
The error most likely occurred in:

> ### Name: sAIC
> ### Title: Compute the Akaike information criterion for the lasso in
> ###   generalized linear models
> ### Aliases: sAIC
> ### Keywords: models regression
> 
> ### ** Examples
> 
> library(MASS)
> library(glmnet)
Error in library(glmnet) : there is no package called 'glmnet'
Execution halted
Packages required but not available: 'glmnet', 'gglasso'

Packages suggested but not available for checking:
  'grpreg', 'truncnorm', 'foreach', 'doParallel', 'testthat', 'covr',
  'vdiffr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'knitr', 'rmarkdown', 'sf', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'dplyr', 'purrr', 'vctrs', 'tibble', 'readr', 'lubridate', 'rlang',
  'httr', 'curl', 'data.table', 'XML', 'xml2', 'jsonlite', 'rlist',
  'zip', 'base64enc', 'mime', 'lifecycle'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'spelling', 'rmarkdown', 'here',
  'microbenchmark', 'ggplot2', 'sessioninfo', 'RForcecom'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'cargo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'knitr', 'coda'
Packages required but not available: 'assertthat', 'purrr', 'stringr'

Packages suggested but not available for checking:
  'charlatan', 'testthat', 'tibble', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'optimx', 'survey'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'dplyr', 'smotefamily', 'e1071', 'ranger', 'pROC', 'FNN'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gdistance', 'raster', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'viridisLite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'pROC', 'abind', 'nloptr', 'foreach', 'doParallel',
  'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking: 'ggplot2', 'lintr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'tidyr', 'reshape', 'purrr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maxLik', 'miscTools', 'systemfit', 'Formula', 'VGAM', 'mvtnorm'

Packages suggested but not available for checking: 'lmtest', 'Ecdat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'TeachingSampling', 'timeDate', 'dplyr', 'magrittr'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'DescTools', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'DescTools'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
propdiff.acc: no visible global function definition for 'rbeta'
propdiff.acc: no visible global function definition for 'rbinom'
propdiff.acc: no visible global function definition for 'pbeta'
propdiff.alc: no visible global function definition for 'rbeta'
propdiff.alc: no visible global function definition for 'rbinom'
propdiff.alc: no visible global function definition for 'qbeta'
propdiff.freq: no visible global function definition for 'qnorm'
propdiff.mblacc: no visible global function definition for 'rbeta'
propdiff.mblacc: no visible global function definition for 'rbinom'
propdiff.mblacc: no visible global function definition for 'pbeta'
propdiff.mblalc: no visible global function definition for 'rbeta'
propdiff.mblalc: no visible global function definition for 'rbinom'
propdiff.mblalc: no visible global function definition for 'qbeta'
propdiff.mblmodwoc: no visible global function definition for 'qchisq'
propdiff.mblmodwoc: no visible global function definition for 'pbeta'
propdiff.mblwoc: no visible global function definition for 'pbeta'
propdiff.modwoc: no visible global function definition for 'qchisq'
propdiff.modwoc: no visible global function definition for 'pbeta'
propdiff.woc: no visible global function definition for 'pbeta'
Undefined global functions or variables:
  pbeta qbeta qchisq qnorm rbeta rbinom
Consider adding
  importFrom("stats", "pbeta", "qbeta", "qchisq", "qnorm", "rbeta",
             "rbinom")
to your NAMESPACE file.
Packages required but not available: 'pps', 'sampling', 'survey'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'lme4'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/my-vignette.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'samplingVarEst'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lpSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'memoise', 'doParallel', 'pbapply', 'formattable'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'raster', 'latticeExtra', 'rasterVis'

Packages suggested but not available for checking: 'rgl', 'rgeos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'impute', 'matrixStats', 'shiny', 'shinyFiles', 'openxlsx', 'GSA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'MSEtool', 'TMB', 'corpcor', 'dplyr', 'gplots', 'rmarkdown',
  'snowfall', 'RcppEigen'

Packages suggested but not available for checking:
  'caret', 'covr', 'ggplot2', 'knitr', 'mvtnorm', 'numDeriv',
  'reshape2', 'shiny', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'BART'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'metafor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Matching'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'igraphdata'

Packages suggested but not available for checking:
  'GO.db', 'GOstats', 'ROCR', 'ape', 'blockmodels', 'car',
  'eigenmodel', 'ergm', 'fdrtool', 'ggplot2', 'huge', 'kernlab',
  'network', 'networkDynamic', 'networkTomography', 'ngspatial',
  'org.Sc.sgd.db', 'sna', 'vioplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

Packages suggested but not available for checking:
  'AER', 'car', 'geepack', 'lmtest', 'multiwayvcov', 'pcse', 'plm',
  'pscl', 'scatterplot3d', 'strucchange'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'rvest', 'lubridate', 'magrittr', 'tibble', 'dplyr', 'readr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'checkmate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'simplegraph'

Packages suggested but not available for checking:
  'covr', 'mockery', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shiny', 'colourpicker', 'manipulateWidget',
  'DT'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'foreach', 'doParallel', 'pcaMethods', 'ggplot2',
  'gridExtra', 'reshape2', 'iterators', 'shiny', 'shinythemes'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pander', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'assertthat', 'lifecycle', 'vctrs'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'lubridate', 'microbenchmark', 'purrr',
  'rmarkdown', 'scales', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ifultools', 'splus2R'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'assertthat', 'dplyr', 'furrr', 'ggplot2', 'glue', 'lubridate',
  'magrittr', 'purrr', 'rlang', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'future', 'knitr', 'remotes', 'rmarkdown', 'testthat', 'xtable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'lubridate', 'dplyr', 'purrr', 'readr', 'tidyr',
  'magrittr', 'httr'

Package suggested but not available for checking: 'openair'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RGtk2', 'raster', 'sp', 'rgdal'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FitAR', 'PolynomF', 'Formula', 'ltsa', 'FitARMA', 'lagged',
  'Rdpack', 'KFAS', 'FKF', 'Rcpp', 'numDeriv', 'dplyr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'fGarch', 'fImport', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'car'

Package suggested but not available for checking: 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'base64enc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sarp.snowprofile', 'dtw', 'shiny'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dendextend', 'smacof'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'xml2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'AzureRMR', 'AzureStor', 'dplyr', 'httr', 'jsonlite', 'R6', 'Rcpp',
  'RcppParallel', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'processx', 'digest', 'BH'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr', 'tidyverse', 'covr', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'nortest', 'crayon', 'cli', 'numDeriv', 'doParallel', 'foreach',
  'AICcmodavg'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
download.sas7bdat.sources : <anonymous>: no visible global function
  definition for 'download.file'
generate.sas7bdat.source: no visible global function definition for
  'download.file'
Undefined global functions or variables:
  download.file
Consider adding
  importFrom("utils", "download.file")
to your NAMESPACE file.
parse.SAScii: no visible binding for global variable 'end'
parse.SAScii: no visible binding for global variable 'start'
read.SAScii: no visible global function definition for 'download.file'
read.SAScii: no visible global function definition for 'unzip'
read.SAScii: no visible global function definition for 'read.fwf'
read.SAScii: no visible global function definition for 'capture.output'
Undefined global functions or variables:
  capture.output download.file end read.fwf start unzip
Consider adding
  importFrom("stats", "end", "start")
  importFrom("utils", "capture.output", "download.file", "read.fwf",
             "unzip")
to your NAMESPACE file.
Packages required but not available:
  'Rcpp', 'fda', 'mclust', 'matrixcalc', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'readr', 'stringr', 'stringi'

Packages suggested but not available for checking: 'testthat', 'markdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'lme4'
Errors in running code in vignettes:
when running code in 'Usinglmer.Rnw'
  ...
> options(width = 75, contrasts = c(unordered = "contr.SAS", 
+     ordered = "contr.poly"))

> library(SASmixed)

> library(lme4)

  When sourcing 'Usinglmer.R':
Error: there is no package called 'lme4'
Execution halted

  'Usinglmer.Rnw'... failed
Error(s) in re-building vignettes:
  ...
--- re-building 'Usinglmer.Rnw' using Sweave

Error: processing vignette 'Usinglmer.Rnw' failed with diagnostics:
 chunk 1 (label = preliminaries) 
Error in library(lme4) : there is no package called 'lme4'

--- failed re-building 'Usinglmer.Rnw'

SUMMARY: processing the following file failed:
  'Usinglmer.Rnw'

Error: Vignette re-building failed.
Execution halted
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
SASPECT: no visible global function definition for 'dbinom'
my.SOnePro: missing arguments not allowed in calls to 'c'
my.ttest: no visible global function definition for 'var'
Undefined global functions or variables:
  dbinom var
Consider adding
  importFrom("stats", "dbinom", "var")
to your NAMESPACE file.
Packages required but not available:
  'digest', 'fs', 'rlang', 'htmltools', 'R6', 'rappdirs'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'withr', 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'logr', 'fmtr', 'libr', 'reporter'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tidylog', 'magrittr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Hmisc', 'stringi'

Package which this enhances but not available for checking: 'chron'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'plyr', 'Rcpp'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rgdal', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ncdf4', 'maps', 'maptools', 'PBSmapping', 'splancs', 'sp',
  'geosphere', 'lubridate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'RColorBrewer', 'sp', 'SeerMapper'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'coda', 'DiceKriging'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'foreach', 'iterators', 'doParallel'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
loads: no visible global function definition for 'untar'
saves: no visible global function definition for 'tar'
Undefined global functions or variables:
  tar untar
Consider adding
  importFrom("utils", "tar", "untar")
to your NAMESPACE file.
Packages required but not available: 'glue', 'htmltools', 'httr', 'crayon'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gee'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bspec', 'dplyr', 'fftwtools', 'pracma', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MSGARCH', 'forecast', 'rugarch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'R6', 'ROOPSD', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'twang', 'survey'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DiagrammeR', 'Rcpp', 'discretization', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
K: no visible global function definition for 'dnorm'
sBF: no visible global function definition for 'density'
sBF: no visible global function definition for 'txtProgressBar'
sBF: no visible global function definition for 'setTxtProgressBar'
Undefined global functions or variables:
  density dnorm setTxtProgressBar txtProgressBar
Consider adding
  importFrom("stats", "density", "dnorm")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Packages required but not available: 'glmnet', 'network'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'poLCA', 'R.oo', 'R.methodsS3', 'mclust', 'igraph', 'Rcpp',
  'combinat', 'flexmix', 'hash'

Packages suggested but not available for checking:
  'testthat', 'mvtnorm', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'Rcpp', 'Rdpack', 'expm', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'blockmodels', 'R6', 'Rcpp', 'ggplot2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'knitr', 'rmarkdown', 'alluvial', 'igraph',
  'aricode', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales', 'reshape2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'rlang', 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rlang', 'tidyr', 'dplyr', 'testthat'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'cli', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'jsonlite', 'curl', 'httr', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'xml2', 'sf', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'httptest', 'ggplot2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'reticulate'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'stringr', 'tensorflow'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'TAM', 'catR'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'pvclust', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'farver', 'labeling', 'lifecycle', 'munsell', 'R6', 'RColorBrewer',
  'viridisLite'

Packages suggested but not available for checking:
  'bit64', 'covr', 'dichromat', 'ggplot2', 'hms', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.matlab', 'protoclust', 'igraph', 'gam'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'knitr', 'kableExtra', 'readxl', 'mblm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'Hmisc'

Package suggested but not available for checking: 'gdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'neldermead', 'deSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'library' or 'require' call to 'stats' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
plot.scair: no visible global function definition for 'par'
plot.scair: no visible global function definition for 'points'
plot.scar: no visible global function definition for 'par'
plot.scar: no visible global function definition for 'points'
predict.scair: no visible global function definition for 'approx'
predict.scar: no visible global function definition for 'approx'
scair: no visible global function definition for 'gaussian'
scair: no visible global function definition for 'runif'
scair: no visible global function definition for 'rnorm'
scar: no visible global function definition for 'gaussian'
scar: no visible global function definition for 'glm.fit'
scar: no visible global function definition for 'approx'
Undefined global functions or variables:
  approx gaussian glm.fit par points rnorm runif
Consider adding
  importFrom("graphics", "par", "points")
  importFrom("stats", "approx", "gaussian", "glm.fit", "rnorm", "runif")
to your NAMESPACE file.
Packages unavailable to check Rd xrefs: 'Iso', 'scam', 'gam'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'jmvcore', 'R6', 'ggplot2', 'cowplot', 'ggstance', 'ggridges'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmlwidgets', 'digest', 'ellipse'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

Package which this enhances but not available for checking: 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggforce', 'rlang', 'rvcheck', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc', 'maps'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sparcl', 'sigclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'foreach', 'doSNOW', 'raster', 'fields', 'LiblineaR', 'limma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'readxl', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytex'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'pcalg', 'Rgraphviz'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'distances'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggrepel', 'igraph', 'irlba', 'magrittr',
  'pbmcapply', 'pROC', 'Rcpp', 'rlang', 'scales', 'tibble', 'uwot',
  'withr', 'RcppArmadillo', 'RcppProgress', 'RcppEigen'

Packages suggested but not available for checking:
  'ggrastr', 'rmumps', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dummies', 'corpcor', 'fda', 'R.methodsS3', 'gnm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'lpSolve'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'readxl', 'lmeInfo'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown', 'ggplot2', 'plyr', 'shiny', 'glue',
  'janitor', 'rclipboard', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sandwich', 'strucchange', 'mirt', 'zoo'

Packages suggested but not available for checking:
  'mvtnorm', 'psychotree', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Package required but not available: 'SCEPtER'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'expm', 'ggplot2', 'pROC', 'ade4'

Package suggested but not available for checking: 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FNN', 'spData', 'dplyr', 'optimParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'stringr', 'ggplot2', 'magrittr', 'purrr', 'apcluster',
  'OpenImageR'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'crayon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.cache', 'dplyr', 'httr', 'rvest', 'stringr', 'xml2', 'tidygraph',
  'ggraph', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'prettydoc', 'roxygen2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
prime.factor: no visible global function definition for 'data'
prime.factor: no visible binding for global variable 'primlist'
Undefined global functions or variables:
  data primlist
Consider adding
  importFrom("utils", "data")
to your NAMESPACE file.
Package suggested but not available for checking: 'ez'
Package unavailable to check Rd xrefs: 'ez'
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'stringi', 'stringr', 'tibble',
  'tidyr', 'tidytext'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'numDeriv', 'cobs', 'scam', 'rbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'dplyr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'stringr', 'tm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat', 'png'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'gplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forcats', 'ggplot2', 'gghalves', 'purrr', 'stringr',
  'tibble', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'spelling', 'htmlTable', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fitdistrplus', 'lmomco'

Package suggested but not available for checking: 'evd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ellipse'

Packages suggested but not available for checking:
  'covr', 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glasso'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'tibble', 'dplyr', 'rlang', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'pheatmap', 'Seurat', 'GSVA', 'downloader', 'pcaMethods',
  'gProfileR', 'limSolve', 'gprofiler2', 'pbapply', 'ADAPTS', 'reshape'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'gamlss.dist'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'alakazam', 'shazam', 'data.table', 'doParallel', 'dplyr',
  'foreach', 'Rcpp', 'rlang', 'scales', 'stringi', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'behavr', 'data.table', 'readr', 'stringr', 'RSQLite', 'memoise'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'ggetho', 'zeitgebr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'e1071', 'gbm', 'partykit', 'randomForest', 'reshape2',
  'sqldf', 'stringr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ggplot2', 'gridExtra', 'foreach', 'doParallel',
  'openxlsx', 'stringi'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pkgdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
score.GGUM: no visible global function definition for 'dnorm'
score.GGUM: no visible global function definition for 'hist'
score.GGUM: no visible global function definition for 'write.table'
Undefined global functions or variables:
  dnorm hist write.table
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "dnorm")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Packages required but not available: 'checkmate', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'combinat', 'limSolve', 'RSpectra', 'igraph', 'igraphdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
CreatePssm: no visible binding for global variable 'training'
Undefined global functions or variables:
  training
Package required but not available: 'msm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'run-all.R'
Running the tests in 'tests/run-all.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'knitr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'gsl', 'hypergeo', 'rmarkdown', 'testthat', 'crch'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/article.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'discretization', 'sqldf', 'magrittr', 'dplyr'

Packages suggested but not available for checking:
  'Rmixmod', 'mvtnorm', 'ggplot2', 'speedglm', 'knitr', 'rmarkdown',
  'plotly', 'pROC', 'shiny', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'forcats', 'ggplot2', 'goftest', 'scoringRules'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pracma', 'foreach', 'doParallel', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'dynutils', 'dynwrap', 'ggplot2', 'lmds', 'mclust',
  'pbapply', 'pheatmap', 'princurve', 'purrr', 'ranger', 'RANN',
  'RColorBrewer', 'reshape2', 'tidyr', 'TSP'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'R.rsp', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doParallel', 'foreach', 'iterators'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reshape2', 'effsize', 'car', 'forecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'ggpubr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glasso'

Package suggested but not available for checking: 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'RcppProgress', 'doParallel', 'foreach', 'ggplot2', 'dplyr',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'microbenchmark', 'glasso',
  'pkgdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RandomFields', 'interp', 'rgl', 'mvtnorm'

Package which this enhances but not available for checking: 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
License components which are templates and need '+ file LICENSE':
  MIT License
Running 'impossible.points-test.R'
Running the tests in 'tests/impossible.points-test.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'XML', 'RCurl', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'rvest', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'RSQLite', 'oligoClasses', 'DBI'
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'testthat', 'lintr', 'formatR', 'devtools', 'roxygen2',
  'rmarkdown', 'Rd2md'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'scriptexec-Ex.R' failed
The error most likely occurred in:

> ### Name: execute
> ### Title: Executes a script and returns the output. The stdout and stderr
> ###   are captured and returned. In case of errors, the exit code will
> ###   return in the status field.
> ### Aliases: execute
> 
> ### ** Examples
> 
> library('scriptexec')
> library('testthat')
Error in library("testthat") : there is no package called 'testthat'
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'RCy3', 'formatR', 'dplyr', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlang', 'purrr'

Packages suggested but not available for checking: 'testthat', 'devtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'dplyr', 'testthat'
Running examples in 'scriptuRs-Ex.R' failed
The error most likely occurred in:

> ### Name: kjv_bible
> ### Title: Tidy data frame of the King James Version of the Bible
> ### Aliases: kjv_bible
> 
> ### ** Examples
> 
> library(dplyr)
Error in library(dplyr) : there is no package called 'dplyr'
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'ape', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'ALL', 'ConsensusClusterPlus', 'scatterplot3d', 'ggplot2',
  'Rtsne', 'limma', 'edgeR', 'TPEA', 'Rmisc', 'plyr', 'ggthemes',
  'reshape2', 'PerformanceAnalytics', 'corrplot', 'Hmisc', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'glue'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'qlcMatrix', 'data.table', 'fastmatch', 'lazyeval',
  'crul', 'jsonlite', 'tibble', 'hoardr', 'curl'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'rgbif', 'sf', 'mapview',
  'rworldmap', 'maps'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'slam', 'testthat'
GNU make is a SystemRequirements.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'pbapply', 'RSpectra', 'scTenifoldNet'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pbapply', 'RSpectra'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'future', 'ggplot2', 'Synth', 'stringr', 'cvTools', 'furrr', 'dplyr',
  'purrr', 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'tidyr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'future.apply', 'future', 'ggplot2', 'reshape2', 'gridExtra',
  'matrixStats', 'RcppArmadillo', 'Rcpp'

Packages suggested but not available for checking:
  'irlba', 'testthat', 'knitr'

Package which this enhances but not available for checking: 'glmGamPoi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'scales', 'assertthat', 'dplyr', 'viridis', 'viridisLite'

Packages suggested but not available for checking: 'testthat', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggExtra', 'ggplot2', 'plotly', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'survey', 'ggplot2'
lahiri.design: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Errors in running code in vignettes:
when running code in 'SDaA_using_survey.Rnw'
  ...

> options(width = 65)

> library(SDaA)

> library(survey)

  When sourcing 'SDaA_using_survey.R':
Error: there is no package called 'survey'
Execution halted

  'SDaA_using_survey.Rnw' using 'UTF-8'... failed
Error(s) in re-building vignettes:
  ...
--- re-building 'SDaA_using_survey.Rnw' using Sweave

Error: processing vignette 'SDaA_using_survey.Rnw' failed with diagnostics:
 chunk 2 (label = loadPkg) 
Error in library(survey) : there is no package called 'survey'

--- failed re-building 'SDaA_using_survey.Rnw'

SUMMARY: processing the following file failed:
  'SDaA_using_survey.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'glmnet', 'glasso', 'huge', 'POET'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pdist', 'PrevMap', 'raster', 'sp', 'spatstat', 'splancs',
  'maptools', 'progress', 'spacetime', 'mapview', 'geoR',
  'spatstat.geom'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'entropy', 'corpcor', 'fdrtool'

Package suggested but not available for checking: 'crossval'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'linbin', 'grImport2', 'readxl'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shinythemes', 'shiny', 'shinyjs', 'shinyTree', 'jsonlite', 'rlang',
  'data.table', 'cli'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'checkmate', 'crayon', 'data.table'

Packages suggested but not available for checking:
  'covr', 'devtools', 'here', 'knitr', 'rmarkdown', 'skimr',
  'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'carData', 'rmarkdown', 'knitr', 'data.table', 'xtable',
  'robustbase', 'e1071', 'Rcpp', 'ggplot2', 'shiny', 'haven',
  'rhandsontable', 'DT', 'shinyBS', 'prettydoc', 'VIM'

Packages suggested but not available for checking: 'laeken', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/sdc_guidelines.rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rdpack', 'plyr', 'dplyr', 'ggplot2'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'raster'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'sp', 'sf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'sdcHierarchies', 'data.table', 'knitr', 'rlang', 'stringr',
  'Rglpk', 'slam', 'lpSolveAPI'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'webshot', 'digest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magic', 'foreach', 'doParallel', 'tuple'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'doParallel', 'foreach', 'iterators'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Hmisc', 'sm', 'tseries', 'rpanel', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'
Namespace in Imports field not imported from: 'grDevices'
  All declared Imports should be used.
Running examples in 'SDEFSR-Ex.R' failed
The error most likely occurred in:

> ### Name: plot.SDEFSR_Rules
> ### Title: Plot a rule set generated by a SDEFSR algorithm
> ### Aliases: plot.SDEFSR_Rules
> 
> ### ** Examples
> 
> plot(habermanRules)
Package 'ggplot2' is not installed and must be installed to show the rule set plot. Do you want to install it? (Y/n): 
Error in plot.SDEFSR_Rules(habermanRules) : 
  Package ggplot2 is not available
Calls: plot -> plot.SDEFSR_Rules
Execution halted
Packages required but not available: 'fda', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'mvtnorm', 'colorRamps', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rgl', 'Bessel', 'manipulate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bnlearn', 'synthpop', 'reshape', 'ggplot2', 'visNetwork', 'arsenal'

Packages suggested but not available for checking:
  'mlr', 'PostcodesioR', 'reclin', 'dplyr', 'knitr', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'plotKML', 'sp', 'raster', 'trip', 'data.table',
  'gridExtra', 'ggsn', 'maps', 'pracma', 'plyr', 'ggmap', 'lubridate',
  'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'sp', 'biomod2', 'blockCV', 'CENFA', 'dismo', 'DT',
  'kernlab', 'randomForest', 'readxl', 'rhandsontable', 'sf', 'shiny',
  'shinyBS', 'shinyFiles', 'SSDM', 'ggcorrplot', 'ggplot2', 'ggpubr',
  'haven', 'tidyverse', 'data.table', 'rgeos', 'rJava'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat', 'rgdal', 'automap',
  'future.apply'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'dismo', 'gbm'

Packages suggested but not available for checking:
  'maptools', 'testthat', 'knitr', 'rmarkdown', 'ncdf4', 'rgdal', 'sp'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'rgdal', 'R.utils', 'RCurl'

Packages suggested but not available for checking:
  'ggplot2', 'reshape2', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'raster'

Packages suggested but not available for checking:
  'R.rsp', 'shinyBS', 'shiny', 'dismo', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dismo', 'gbm', 'ggplot2', 'jsonlite', 'maxnet', 'progress',
  'randomForest', 'raster', 'Rcpp', 'rlang', 'rstudioapi', 'stringr',
  'whisker'

Packages suggested but not available for checking:
  'cli', 'covr', 'crayon', 'htmltools', 'kableExtra', 'knitr', 'maps',
  'pkgdown', 'plotROC', 'rasterVis', 'reshape2', 'rgdal', 'rJava',
  'rmarkdown', 'scales', 'testthat', 'zeallot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'psych'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rCMA', 'matrixcalc', 'rJava', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GB2', 'pscl', 'mvtnorm', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numDeriv', 'PolynomF', 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'spsurvey', 'rgeos', 'deldir', 'covr'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'devtools', 'roxygen2', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'sp', 'rgdal', 'rgeos', 'rasterVis', 'tidyr',
  'raster', 'dismo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'oce', 'gsw'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'matrixStats', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'googleAuthR', 'stringr'

Packages suggested but not available for checking:
  'shiny', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'doParallel', 'foreach', 'KScorrect', 'kolmim', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
adx: no visible global function definition for 'abline'
adx: no visible global function definition for 'legend'
dx: no visible global function definition for 'abline'
dx: no visible global function definition for 'legend'
maxd: no visible global function definition for 'abline'
maxd: no visible global function definition for 'legend'
pc: no visible global function definition for 'rainbow'
pc: no visible global function definition for 'abline'
pc: no visible global function definition for 'legend'
pc: no visible global function definition for 'points'
pcu: no visible global function definition for 'rainbow'
pcu: no visible global function definition for 'abline'
pcu: no visible global function definition for 'legend'
pcu: no visible global function definition for 'points'
rmsd: no visible global function definition for 'abline'
rmsd: no visible global function definition for 'legend'
rsd: no visible global function definition for 'abline'
rsd: no visible global function definition for 'legend'
Undefined global functions or variables:
  abline legend points rainbow
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "abline", "legend", "points")
to your NAMESPACE file.
Packages required but not available:
  'ggplot2', 'gridExtra', 'TTR', 'magrittr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'x13binary'

Packages suggested but not available for checking:
  'seasonalview', 'testthat', 'covr', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'seasonal', 'shinydashboard', 'shiny', 'dygraphs', 'htmlwidgets',
  'openxlsx', 'xtable', 'xts', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dlnm', 'coda'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 3 marked UTF-8 strings
Packages required but not available: 'xts', 'zoo', 'forecast'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rms', 'lubridate', 'reshape2', 'plyr'

Package suggested but not available for checking: 'waterData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'Hmisc', 'optimization'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'JM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'fdrtool'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'SPSL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'secr', 'abind', 'openCR'

Package suggested but not available for checking: 'secrlinear'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'openssl', 'rprojroot', 'curl', 'jsonlite'

Packages suggested but not available for checking:
  'covr', 'mockery', 'testthat', 'knitr', 'rmarkdown', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'tidyr', 'dplyr', 'magrittr', 'testthat', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'secr', 'sp', 'igraph', 'maptools', 'rgdal'

Packages suggested but not available for checking:
  'knitr', 'rgeos', 'secrdesign'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'sp', 'raster', 'stringr', 'Rcpp', 'RcppParallel',
  'RcppNumerical', 'RcppEigen'

Packages suggested but not available for checking:
  'maptools', 'spsurvey', 'rgdal', 'knitr', 'gdistance', 'rgeos',
  'readxl', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DDD', 'ape', 'foreach', 'doParallel', 'apTreeshape', 'phylobase',
  'geiger', 'deSolve'

Packages suggested but not available for checking:
  'diversitree', 'phytools', 'testthat', 'testit', 'knitr', 'rmarkdown'

Package which this enhances but not available for checking: 'doMC'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'haven', 'readr', 'readxl', 'stringr', 'tibble', 'magrittr', 'purrr',
  'tidyr', 'dplyr', 'rlang', 'lubridate'

Packages suggested but not available for checking:
  'knitr', 'lintr', 'rmarkdown', 'testthat', 'tufte', 'igraph'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'crayon', 'purrr', 'stringr', 'rstudioapi', 'magrittr',
  'ggplot2', 'fansi'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'CCA', 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quanteda', 'Rcpp', 'RcppParallel', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'quanteda.textmodels', 'topicmodels'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'binom'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'deSolve', 'pracma', 'Deriv', 'Ryacas', 'mvtnorm', 'matrixStats',
  'statmod', 'coda', 'ggplot2', 'tidyr', 'dplyr', 'Hmisc', 'R.utils',
  'callr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rsbml'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rpanel'

Package suggested but not available for checking: 'tkrplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages unavailable to check Rd xrefs: 'EDNE.EQ', 'T2EQ'
Packages required but not available:
  'dplyr', 'ggplot2', 'rgl', 'demography', 'Rcpp', 'reshape2',
  'tibble', 'LaF', 'DBI', 'RSQLite', 'openxlsx', 'WriteXLS',
  'labelled', 'scales', 'forcats', 'purrr', 'readr', 'tidyr',
  'stringr', 'plyr'

Package suggested but not available for checking: 'bbmle'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bayestestR', 'dplyr', 'effectsize', 'ggplot2', 'ggridges',
  'insight', 'magrittr', 'parameters', 'rlang'

Packages suggested but not available for checking:
  'brms', 'coda', 'correlation', 'emmeans', 'ggraph', 'ggrepel',
  'glmmTMB', 'gridExtra', 'httr', 'lavaan', 'lme4', 'logspline',
  'mclust', 'metafor', 'modelbased', 'NbClust', 'nFactors',
  'performance', 'psych', 'qqplotr', 'randomForest', 'rmarkdown',
  'rstanarm', 'tidygraph', 'tidyr', 'spelling', 'testthat', 'vdiffr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maptools', 'RColorBrewer', 'rgdal', 'sp', 'stringr',
  'SeerMapperRegs', 'SeerMapperEast', 'SeerMapperWest',
  'SeerMapper2010Regs', 'SeerMapper2010East', 'SeerMapper2010West'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'urca', 'forecast', 'dplyr', 'magrittr', 'randomForest',
  'forecTheta', 'stringr', 'tibble', 'purrr', 'future', 'furrr',
  'tsfeatures'

Packages suggested but not available for checking:
  'testthat', 'covr', 'repmis', 'knitr', 'rmarkdown', 'ggplot2',
  'tidyr', 'Mcomp', 'GGally'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tuneR'

Packages suggested but not available for checking:
  'audio', 'fftw', 'ggplot2', 'rgl', 'rpanel', 'phonTools', 'signal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RColorBrewer', 'dplyr', 'plyr', 'reshape2', 'ggplot2', 'magrittr',
  'Rcpp', 'zoo', 'scales', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dygraphs', 'xts', 'leaflet', 'sp',
  'adehabitatLT', 'depmixS4', 'moveHMM', 'htmltools', 'move',
  'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jointseg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgdal', 'rgeos', 'spdep', 'OasisR', 'outliers'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'plyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'flowMerge', 'flowClust', 'flowCore', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'foreach', 'glue'

Packages suggested but not available for checking:
  'testthat', 'doParallel', 'knitr', 'rmarkdown', 'tidyr', 'tibble',
  'dplyr', 'lubridate', 'magrittr', 'rdwd', 'purrr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'foreach', 'iterators', 'doParallel', 'fGarch', 'corpcor',
  'mvtnorm', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'splancs'

Packages suggested but not available for checking:
  'spdep', 'spgrass6', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'vegan'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pedtools', 'pedprobr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'arm', 'pbapply', 'DescTools', 'patchwork', 'ggpubr',
  'ggplot2', 'knitr', 'rlang', 'magrittr', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
get.infectiousness: no visible global function definition for 'qchisq'
Undefined global functions or variables:
  qchisq
Consider adding
  importFrom("stats", "qchisq")
to your NAMESPACE file.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DBI', 'dplyr', 'tidyr', 'factoextra', 'RPostgreSQL', 'rvest',
  'stringi', 'XML', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available:
  'ape', 'deSolve', 'nloptr', 'data.table', 'expm', 'phangorn',
  'seqinr', 'statmod', 'zoo', 'RColorBrewer', 'GenSA'

Packages suggested but not available for checking:
  'testthat', 'igraph', 'phytools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'lars', 'glmnet', 'igraph', 'msgps', 'Rfast', 'Cascade', 'varbvs',
  'spls', 'abind'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mixOmics', 'CascadeData'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'rmarkdown', 'markdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'glmnet', 'intervals', 'adaptMCMC', 'Rcpp'

Package suggested but not available for checking: 'Rmpfr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DEoptim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rsolnp', 'latticeExtra', 'ade4', 'FD'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'R6'

Packages suggested but not available for checking:
  'testthat', 'XML', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat', 'ecespa', 'spatstat.geom', 'spatstat.core'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking: 'Ecdat', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'xml2', 'magrittr', 'whisker'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'data.table', 'testthat', 'covr', 'RSauceLabs'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pwr', 'plyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lme4'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gamm4', 'lmerTest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'xgboost', 'Rcpp', 'CompareCausalNetworks', 'bnlearn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glasso', 'Rmixmod', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shiny.semantic', 'htmltools', 'glue', 'checkmate'

Packages suggested but not available for checking:
  'testthat', 'lintr', 'shinydashboard', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fields', 'PerformanceAnalytics', 'DescTools', 'msos'

Package suggested but not available for checking: 'kernlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sem'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shinyAce', 'lavaan', 'semPlot', 'dplyr', 'semTools',
  'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'minpack.lm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lme4'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CORElearn', 'RSNNS', 'fpc', 'timeDate', 'robustbase', 'ks',
  'logspline', 'mcclust', 'flexclust', 'StatMatch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Formula'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.oo', 'R.methodsS3', 'igraph', 'R.utils'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numDeriv', 'Rsolnp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'lubridate', 'leaflet', 'magrittr', 'urlshorteneR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'SemNetDictionaries', 'stringdist', 'searcher', 'readxl', 'R.matlab',
  'stringi', 'rstudioapi', 'easycsv'

Packages suggested but not available for checking:
  'knitr', 'htmlTable', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'easycsv', 'knitr'

Packages suggested but not available for checking:
  'htmlTable', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pbapply', 'dplyr', 'plyr', 'RColorBrewer', 'purrr', 'magrittr',
  'ggplot2', 'igraph', 'qgraph', 'scales', 'car', 'broom', 'effects',
  'philentropy'

Packages suggested but not available for checking:
  'shiny', 'shinyjs', 'shinyalert', 'shinyMatrix', 'shinyBS',
  'spreadr', 'animation', 'R.matlab', 'readxl', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lavaan'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'qgraph', 'lavaan', 'sem', 'plyr', 'XML', 'igraph', 'lisrelToR',
  'rockchalk', 'colorspace', 'corpcor', 'OpenMx', 'regsem'

Package suggested but not available for checking: 'MplusAutomation'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'XML', 'sem', 'matrixcalc'
'library' or 'require' calls in package code:
  'XML' 'boot' 'sem'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unexported objects imported by ':::' calls:
  'boot:::const' 'stats:::AIC.logLik' 'stats:::BIC.logLik'
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'addPath.plsm' 'endogenous' 'predecessors' 'qSquared' 'reorder'
  'resempls' 'residuals.sempls'
Package unavailable to check Rd xrefs: 'sem'
Running examples in 'semPLS-Ex.R' failed
The error most likely occurred in:

> ### Name: read.splsm
> ### Title: Import of XML Model Description Specified in SmartPLS
> ### Aliases: read.splsm
> 
> ### ** Examples
> 
> # getting the path to file: 'ECSI_Tenenhaus.splsm' (generated by SmartPLS)
> ptf <- system.file("SmartPLS", "workspace", "ecsi", "ECSI_Tenenhaus.splsm",
+                    package="semPLS")
> 
> # creating the model specification to use with 'sempls()'.
> ECSI <- read.splsm(ptf)
Loading required package: XML
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'XML'
Error in read.splsm(ptf) : Package 'XML' is required.
Execution halted
Errors in running code in vignettes:
when running code in 'semPLS-intro.Rnw'
  ...
Satisfaction     0           0       0     0            0          1       1
Complaints       0           0       0     0            0          0       1
Loyalty          0           0       0     0            0          0       0

> library("matrixcalc", pos = which(search() == "package:semPLS") + 
+     1)

  When sourcing 'semPLS-intro.R':
Error: there is no package called 'matrixcalc'
Execution halted

  'semPLS-intro.Rnw'... failed
Error(s) in re-building vignettes:
  ...
--- re-building 'semPLS-intro.Rnw' using Sweave
Loading required package: lattice

Error: processing vignette 'semPLS-intro.Rnw' failed with diagnostics:
 chunk 33 (label = sem2) 
Error in library("matrixcalc", pos = which(search() == "package:semPLS") +  : 
  there is no package called 'matrixcalc'

--- failed re-building 'semPLS-intro.Rnw'

SUMMARY: processing the following file failed:
  'semPLS-intro.Rnw'

Error: Vignette re-building failed.
Execution halted
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'matrixcalc', 'mi'

Packages suggested but not available for checking: 'polycor', 'DiagrammeR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Package required but not available: 'lavaan'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'np', 'gamlss', 'moments', 'doParallel', 'foreach', 'iterators'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'kutils', 'xtable', 'lavaan', 'plyr', 'stationery'

Package suggested but not available for checking: 'rockchalk'

VignetteBuilder package required for checking but not installed: 'stationery'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lavaan'

Packages suggested but not available for checking:
  'Amelia', 'mice', 'GPArotation', 'mnormt', 'blavaan', 'emmeans',
  'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'OpenMx', 'bitops', 'sets', 'digest', 'rpart.plot', 'plotrix',
  'stringr', 'matrixcalc', 'expm', 'ggplot2', 'tidyr', 'matrixStats',
  'mvtnorm'

Packages suggested but not available for checking:
  'lavaan', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'assertthat'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'foreach'

Packages suggested but not available for checking: 'roxygen2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'stars', 'data.table', 'raster', 'rgdal', 'XML', 'jsonlite',
  'geojsonio', 'foreach', 'doParallel', 'httr', 'RcppTOML'

Packages suggested but not available for checking:
  'leaflet', 'leafpm', 'mapedit', 'shiny', 'shinyFiles',
  'shinydashboard', 'shinyjs', 'shinyWidgets', 'spelling',
  'geojsonlint', 'httptest', 'knitr', 'markdown', 'rmarkdown', 'sys',
  'units', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'base64enc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'png', 'stargazer'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'httr', 'jsonlite', 'glue'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'phylolm', 'ggplot2', 'caper', 'phytools', 'geiger'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'BiasedUrn', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'relaimpo', 'splitstackshape', 'ggrepel', 'stringi',
  'plotly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
gconv: no visible global function definition for 'convolve'
sens.analysis.aberrant.rank: no visible global function definition for
  'pnorm'
sens.analysis.mh: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  convolve pnorm
Consider adding
  importFrom("stats", "convolve", "pnorm")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
mscorev: no visible global function definition for 'quantile'
senmwCI : funcCI: no visible global function definition for 'qnorm'
senmwCI : funcCI2: no visible global function definition for 'qnorm'
separable1k: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  pnorm qnorm quantile
Consider adding
  importFrom("stats", "pnorm", "qnorm", "quantile")
to your NAMESPACE file.
plot.sensitivity.2.0d: no visible global function definition for 'gray'
sensitivitySGD: no visible global function definition for 'tail'
sensitivitySGL: no visible global function definition for 'tail'
Undefined global functions or variables:
  gray tail
Consider adding
  importFrom("grDevices", "gray")
  importFrom("utils", "tail")
to your NAMESPACE file.
Packages required but not available:
  'numbers', 'ggplot2', 'Rcpp', 'foreach', 'RcppArmadillo'

Packages suggested but not available for checking:
  'condMVNorm', 'DiceDesign', 'DiceKriging', 'doParallel', 'evd',
  'ggExtra', 'gplots', 'gtools', 'igraph', 'ks', 'mc2d', 'mvtnorm',
  'pracma', 'randtoolbox', 'RANN', 'reshape2', 'rgl', 'triangle',
  'TSP', 'whitening'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'maxLik', 'mvtnorm'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ggplot2', 'lhs', 'magrittr', 'matrixStats',
  'randtoolbox', 'deSolve', 'Rdpack', 'Rfast', 'rlang', 'scales',
  'stringr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FactoMineR', 'ggplot2', 'reshape2', 'AlgDesign', 'gtools', 'ggrepel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'leaps', 'car'
Packages required but not available: 'multcomp', 'numDeriv'

Packages suggested but not available for checking: 'ordinal', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'BiasedUrn'

Package suggested but not available for checking: 'sensitivitymw'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'lubridate', 'plyr', 'ggmap', 'ggplot2', 'R.utils',
  'openssl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tokenizers.bpe'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tm', 'qdapDictionaries', 'ngramrr', 'moments', 'stringdist',
  'glmnet', 'spikeslab', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'SnowballC', 'XML'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ggplot2', 'lexicon', 'stringi', 'syuzhet',
  'textclean', 'textshape'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caret', 'data.table', 'foreach', 'ggplot2', 'glmnet', 'ISOweek',
  'quanteda', 'Rcpp', 'RcppRoll', 'RcppParallel', 'stringi',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'doParallel', 'e1071', 'lexicon', 'MCS', 'NLP',
  'randomForest', 'stopwords', 'testthat', 'tm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'stringr', 'tibble', 'uuid'

Packages suggested but not available for checking:
  'covr', 'httptest', 'mockery', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RColorBrewer', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'wrapr', 'dplyr', 'rlang', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'clue'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/seqDesignInstructions.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/seqDesignInstructions.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available:
  'Rcpp', 'eventdataR', 'igraph', 'dplyr'

Package suggested but not available for checking: 'xtable'

VignetteBuilder packages required for checking but not installed:
  'xtable', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'geepack', 'mvtnorm', 'VGAM', 'foreach', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tcltk2', 'Biostrings', 'plotrix', 'plyr', 'phangorn', 'qvalue',
  'widgetTools', 'calibrate', 'ggplot2', 'R2jags', 'coda', 'scales',
  'ape'

Package suggested but not available for checking: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'irlba', 'sva', 'pdist', 'matchingR', 'clue', 'cate'

Packages suggested but not available for checking:
  'covr', 'testthat', 'SummarizedExperiment', 'DESeq2', 'knitr',
  'rmarkdown', 'airway', 'limma', 'qvalue', 'edgeR', 'optmatch'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'TraMineR'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'FactoMineR', 'GDAtools', 'RColorBrewer',
  'TraMineRextras', 'WeightedCluster', 'ade4', 'questionr',
  'rmdformats', 'dplyr', 'purrr', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gridBase', 'igraph', 'nloptr', 'numDeriv', 'Rcpp', 'TraMineR',
  'RcppArmadillo'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/seqHMM.Rnw'
   'inst/doc/seqHMM_algorithms.Rnw'
   'inst/doc/seqHMM_estimation.Rnw'
   'inst/doc/seqHMM_visualization.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dHSIC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ade4', 'segmented'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'doMC', 'rmarkdown', 'knitr'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Biostrings', 'magrittr'

Packages suggested but not available for checking:
  'downloader', 'knitr', 'GenomicAlignments', 'GenomicRanges',
  'IRanges', 'muscle', 'Rsamtools', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'SKAT'
GNU make is a SystemRequirements.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
      volume = {39},
      number = {8},
      pages = {1242},
      year = {2015},
      note = {seqminer version 8.0},
      web = {http://seqminer.genomic.codes},
      publisher = {Wiley Online Library},
      url = {http://dx.doi.org/10.1002/gepi.21918},
      doi = {10.1002/gepi.21918},
    }
  
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Malformed Title field: should not end in a period.
plotenz : addmark: no visible global function definition for 'par'
plotenz : addmark: no visible global function definition for 'text'
plotenz : addmark: no visible global function definition for 'segments'
plotenz : addband: no visible global function definition for 'segments'
plotenz : addband: no visible global function definition for 'text'
plotenz: no visible global function definition for 'layout'
plotenz: no visible global function definition for 'text'
plotenz: no visible global function definition for 'dev.new'
Undefined global functions or variables:
  dev.new layout par segments text
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "layout", "par", "segments", "text")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'RcppProgress', 'selectiveInference'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/sequences.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Sequential'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pbapply', 'squash', 'iotools', 'readr', 'seqminer', 'copynumber'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'rmdformats'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

Packages suggested but not available for checking:
  'xlsx', 'knitr', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bit64', 'DBI', 'dplyr', 'dbplyr', 'httr', 'jsonlite', 'htmltools',
  'readr', 'purrr', 'scales', 'tibble', 'magrittr'

Packages suggested but not available for checking:
  'DT', 'stevedore', 'tinytest', 'covr', 'DBItest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'TSP', 'qap', 'gclus', 'dendextend', 'colorspace', 'gplots',
  'registry'

Packages suggested but not available for checking:
  'biclust', 'testthat', 'DendSer', 'GA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'gplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'ordinal'

Packages suggested but not available for checking:
  'covr', 'testthat', 'VGAM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'truncnorm', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'data.table', 'dplyr', 'magrittr', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mime', 'httpuv', 'xfun', 'jsonlite'

Packages suggested but not available for checking:
  'later', 'rstudioapi', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lavaan', 'gplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'cli', 'withr'

Packages suggested but not available for checking:
  'callr', 'covr', 'mockery', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
capture: no visible binding for global variable 'resultText'
restore.session: no visible binding for global variable
  '.save.session.packages'
restore.session: no visible binding for global variable
  '.save.session.search'
save.session: no visible global function definition for 'dev.list'
save.session: no visible binding for '<<-' assignment to
  '.save.session.search'
save.session: no visible binding for '<<-' assignment to
  '.save.session.packages'
Undefined global functions or variables:
  .save.session.packages .save.session.search dev.list resultText
Consider adding
  importFrom("grDevices", "dev.list")
to your NAMESPACE file.
Packages required but not available: 'checkmate', 'Rcpp', 'R6'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'devtools', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'QCA', 'admisc', 'ggplot2', 'ggrepel', 'stargazer', 'scatterplot3d',
  'fmsb', 'betareg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
setpath: no visible global function definition for 'cov'
setpath: no visible global function definition for 'median'
setpath: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  cov median pchisq
Consider adding
  importFrom("stats", "cov", "median", "pchisq")
to your NAMESPACE file.
Packages required but not available: 'XML', 'data.table', 'igraph'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'do'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
random.number.test: no visible global function definition for 'runif'
random.number.test: no visible global function definition for 'rnorm'
setRNG: no visible global function definition for 'runif'
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Package suggested but not available for checking: 'proxy'
Errors in running code in vignettes:
when running code in 'sets.Rnw'
  ...
$x9
{"fuzzy" [{0.2, 0.6, 1}], "image" [{0.6}], "neural network" [{0.2,
 0.6, 1}]}


> library("proxy")

  When sourcing 'sets.R':
Error: there is no package called 'proxy'
Execution halted

  'sets.Rnw'... failed
Error(s) in re-building vignettes:
  ...
--- re-building 'sets.Rnw' using Sweave

Error: processing vignette 'sets.Rnw' failed with diagnostics:
 chunk 69 
Error in library("proxy") : there is no package called 'proxy'

--- failed re-building 'sets.Rnw'

SUMMARY: processing the following file failed:
  'sets.Rnw'

Error: Vignette re-building failed.
Execution halted
Package required but not available: 'assertive.base'

Packages suggested but not available for checking: 'magrittr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Skipping vignette re-building
Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'rlang', 'sctransform', 'RcppEigen'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cowplot', 'fitdistrplus', 'future', 'future.apply', 'ggplot2',
  'ggrepel', 'ggridges', 'httr', 'ica', 'igraph', 'irlba', 'jsonlite',
  'leiden', 'lmtest', 'matrixStats', 'miniUI', 'patchwork', 'pbapply',
  'plotly', 'png', 'RANN', 'RColorBrewer', 'Rcpp', 'RcppAnnoy',
  'reticulate', 'rlang', 'ROCR', 'Rtsne', 'scales', 'scattermore',
  'sctransform', 'SeuratObject', 'shiny', 'spatstat.core',
  'spatstat.geom', 'tibble', 'uwot', 'RcppEigen', 'RcppProgress'

Packages suggested but not available for checking:
  'ape', 'rsvd', 'testthat', 'hdf5r', 'S4Vectors',
  'SummarizedExperiment', 'SingleCellExperiment', 'MAST', 'DESeq2',
  'BiocGenerics', 'GenomicRanges', 'GenomeInfoDb', 'IRanges',
  'rtracklayer', 'Rfast2', 'monocle', 'Biobase', 'VGAM', 'limma',
  'metap', 'enrichR', 'mixtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'library' or 'require' call to 'graphics' which was already attached by Depends.
  Please remove these calls from your code.
severity: no visible global function definition for 'qnorm'
severity: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  pnorm qnorm
Consider adding
  importFrom("stats", "pnorm", "qnorm")
to your NAMESPACE file.
Packages required but not available: 'cli', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gmm', 'minpack.lm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
L_exp: no visible global function definition for 'pnorm'
L_hNV: no visible global function definition for 'pnorm'
L_trunc: no visible global function definition for 'pnorm'
L_trunc_mufest: no visible global function definition for 'pnorm'
dgp: no visible global function definition for 'runif'
dgp: no visible global function definition for 'rnorm'
eff.sfa: no visible global function definition for 'predict'
fitted.sfa: no visible global function definition for 'predict'
predict.sfa: no visible global function definition for 'coef'
print.sfa: no visible global function definition for 'coef'
residuals.sfa: no visible global function definition for 'fitted'
sfa: no visible global function definition for 'model.frame'
sfa: no visible global function definition for 'model.response'
sfa.fit: no visible global function definition for 'lm'
sfa.fit: no visible global function definition for 'resid'
sfa.fit: no visible global function definition for 'var'
sfa.fit: no visible global function definition for 'optim'
summary.sfa: no visible global function definition for 'logLik'
summary.sfa: no visible global function definition for 'pchisq'
te.eff.sfa: no visible global function definition for 'residuals'
te.eff.sfa: no visible global function definition for 'pnorm'
u.sfa: no visible global function definition for 'residuals'
u.sfa: no visible global function definition for 'dnorm'
u.sfa: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  coef dnorm fitted lm logLik model.frame model.response optim pchisq
  pnorm predict resid residuals rnorm runif var
Consider adding
  importFrom("stats", "coef", "dnorm", "fitted", "lm", "logLik",
             "model.frame", "model.response", "optim", "pchisq", "pnorm",
             "predict", "resid", "residuals", "rnorm", "runif", "var")
to your NAMESPACE file.
Packages required but not available:
  'dplyr', 'emdbook', 'fBasics', 'Formula', 'gsl', 'marqLevAlg',
  'maxLik', 'moments', 'nleqslv', 'numDeriv', 'primes', 'qrng',
  'randtoolbox', 'trustOptim', 'ucminf'

Package suggested but not available for checking: 'mlogit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'triangle', 'zoo', 'sna'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'expm', 'forcats', 'igraph', 'kableExtra', 'magrittr',
  'purrr', 'Rdpack', 'rootSolve', 'rlang', 'tibble', 'tidyr',
  'tidyselect', 'stringr', 'vctrs', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ggraph', 'ggplot2', 'knitr', 'pkgdown', 'rmarkdown', 'RColorBrewer',
  'testthat', 'tidygraph', 'tidyverse', 'networkD3'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'RTriangle', 'sf', 'sp', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'maps', 'rmarkdown', 'viridisLite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DoE.base', 'conf.design', 'R6'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'geometries', 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'crayon', 'dplyr', 'igraph', 'lwgeom', 'rlang', 'sf', 'sfheaders',
  'tibble', 'tidygraph', 'units'

Packages suggested but not available for checking:
  'spatstat.geom', 'dbscan', 'fansi', 'ggplot2', 'knitr', 'rmarkdown',
  'spatstat', 'testthat', 'tidyverse', 'TSP', 'spatstat.linnet'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'dplyr', 'magrittr', 'plotly', 'knitr', 'rmarkdown', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'sfo-Ex.R' failed
The error most likely occurred in:

> ### Name: sfo_passengers
> ### Title: SFO Airport Air Traffic Passenger Statistics
> ### Aliases: sfo_passengers
> ### Keywords: SFO airline datasets passengers timeseries
> 
> ### ** Examples
> 
> data(sfo_passengers)
> 
> require(dplyr)
Loading required package: dplyr
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'dplyr'
> 
> # Get summary of total number of passengers by activity type
> # in most recent month
> sfo_passengers %>%
+   filter(activity_period == max(activity_period)) %>%
+   group_by(activity_type_code) %>%
+   summarise(total = sum(passenger_count), .groups = "drop")
Error in sfo_passengers %>% filter(activity_period == max(activity_period)) %>%  : 
  could not find function "%>%"
Execution halted
Packages required but not available:
  'classInt', 'DBI', 'magrittr', 'Rcpp', 'units'

Packages suggested but not available for checking:
  'blob', 'covr', 'dplyr', 'ggplot2', 'knitr', 'lwgeom', 'maps',
  'mapview', 'microbenchmark', 'odbc', 'pillar', 'pool', 'raster',
  'rgdal', 'rgeos', 'rlang', 'rmarkdown', 'RPostgres', 'RPostgreSQL',
  'RSQLite', 's2', 'sp', 'spatstat', 'spatstat.geom', 'spatstat.core',
  'spatstat.linnet', 'spatstat.utils', 'stars', 'terra', 'testthat',
  'tibble', 'tidyr', 'tidyselect', 'tmap', 'vctrs'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'lokern'

Packages which this enhances but not available for checking:
  'nor1mix', 'polycor', 'sm', 'tikzDevice', 'e1071', 'Hmisc', 'gmp',
  'pastecs', 'polynom', 'robustbase'
Packages unavailable to check Rd xrefs: 'e1071', 'Hmisc', 'gmp', 'pastecs', 'polycor', 'polynom', 'robustbase'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'seriation'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'wordspace', 'doParallel', 'ff'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sf'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'adehabitatLT', 'knitr', 'geosphere',
  'scales', 'covr', 'rmarkdown', 'lwgeom'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fda', 'SuppDists'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RSelenium', 'RCurl', 'qdapRegex', 'dplyr', 'stringr', 'data.table',
  'plyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'numDeriv', 'alabama'

Packages suggested but not available for checking: 'knitr', 'goftest'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/vignette.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'BH', 'bigmemory', 'RcppArmadillo'

Packages suggested but not available for checking:
  'bigmemory', 'glmnet', 'gridExtra', 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'copula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'tripack'
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'AdequacyModel', 'ggplot2', 'moments', 'gridExtra',
  'pracma'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'doParallel', 'Rcpp', 'RcppProgress', 'RcppArmadillo',
  'BH'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tensorflow', 'reticulate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'ggplot2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'ramify', 'Rtauchen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'glasso', 'mvtnorm', 'tidyr', 'zoo'

Packages suggested but not available for checking:
  'dplyr', 'ModelMetrics', 'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'poibin'

Package suggested but not available for checking: 'discreteMTP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'crayon', 'data.table'

Packages suggested but not available for checking:
  'SGP', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mixOmics', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Cairo', 'callr', 'colorspace', 'crayon', 'data.table', 'digest',
  'doParallel', 'doRNG', 'equate', 'foreach', 'gridBase', 'iterators',
  'gtools', 'jsonlite', 'matrixStats', 'plotly', 'quantreg',
  'randomNames', 'rngtools', 'RSQLite', 'sn', 'toOrdinal'

Packages suggested but not available for checking:
  'SGPdata', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'polycor'
amse: no visible global function definition for 'na.omit'
arb: no visible global function definition for 'na.omit'
rdatagen: no visible global function definition for 'qnorm'
rdatagen: no visible global function definition for 'pbinom'
rdatagen: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  na.omit pbinom pnorm qnorm
Consider adding
  importFrom("stats", "na.omit", "pbinom", "pnorm", "qnorm")
to your NAMESPACE file.
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'optimx', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'ggplot2'

Package which this enhances but not available for checking: 'colorspace'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'sp', 'rgeos', 'raster'

Packages suggested but not available for checking:
  'R.rsp', 'maptools', 'testthat', 'reshape2', 'threejs', 'rgdal'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rscala', 'commonsMath'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coneproj', 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'foreign' which was already attached by Depends.
  Please remove these calls from your code.
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mvtnorm', 'mice'
Namespace in Imports field not imported from: 'stats'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Running examples in 'shapeNA-Ex.R' failed
The error most likely occurred in:

> ### Name: barplot.shapeNA
> ### Title: Barplot Showcasing Missingness Proportion of the Original Data
> ### Aliases: barplot.shapeNA
> 
> ### ** Examples
> 
>     S <- toeplitz(seq(1, 0.1, length.out = 3))
>     x <- mvtnorm::rmvt(100, S, df = 5)
Error in loadNamespace(x) : there is no package called 'mvtnorm'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available:
  'sp', 'igraph', 'rgdal', 'landscapemetrics', 'rgeos', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'plot3D'

Package suggested but not available for checking: 'geomorph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gplots', 'jpeg', 'pixmap', 'wavethresh', 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coneproj', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'minpack.lm', 'scatterplot3d', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'xgboost', 'data.table', 'ggforce', 'ggExtra',
  'RColorBrewer', 'ggpubr', 'BBmisc'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gridExtra', 'here', 'lightgbm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reticulate', 'DALEX', 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'knitr', 'randomForest', 'testthat', 'markdown', 'qpdf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'Rcpp', 'condMVNorm', 'mvnfast', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ranger', 'xgboost', 'testthat', 'knitr', 'rmarkdown', 'roxygen2',
  'ggplot2', 'caret', 'gbm', 'party', 'partykit'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ghyp', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'matrixcalc', 'sadists'

Packages suggested but not available for checking:
  'xtable', 'xts', 'timeSeries', 'quantmod', 'TTR', 'testthat',
  'sandwich', 'txtplot', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/AsymptoticMarkowitz.Rnw'
   'inst/doc/SharpeR.Rnw'
   'inst/doc/SharpeRatio.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'np'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'aqp', 'ape', 'soilDB', 'igraph', 'vegan', 'sp', 'reshape2', 'Hmisc',
  'scales', 'circular', 'RColorBrewer', 'plyr', 'digest', 'e1071',
  'stringi', 'curl'

Packages suggested but not available for checking:
  'rgdal', 'spdep', 'circlize', 'rvest', 'xml2', 'rgeos', 'raster',
  'httr', 'jsonlite', 'dendextend', 'testthat', 'hydromad',
  'latticeExtra', 'farver'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'classInt', 'raster', 'spatstat.core', 'spatstat.geom', 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'testthat', 'knitr', 'rmarkdown', 'spatstat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'dcmle', 'dclone'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tree', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FNN', 'pdist', 'slam', 'Ryacas', 'rmarkdown', 'pracma'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'alakazam', 'ape', 'diptest', 'doParallel', 'dplyr',
  'foreach', 'igraph', 'iterators', 'kedd', 'lazyeval', 'progress',
  'rlang', 'scales', 'seqinr', 'stringi', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'shiny', 'tidyr', 'ggExtra', 'gridExtra', 'scales',
  'rmarkdown', 'shinyMatrix', 'ggridges', 'Hmisc'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'GGally'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rtop', 'zoo', 'ggplot2', 'ggpubr', 'tidyverse', 'tidyr', 'scales',
  'dplyr', 'magrittr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xlsx', 'bmp', 'tiff'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pander'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'Formula'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'AER', 'spelling', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'attempt', 'DT', 'dygraphs', 'ggplot2', 'magrittr', 'plotly'

Packages suggested but not available for checking:
  'covr', 'pkgdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'scales', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'shiny', 'uuid'

Packages suggested but not available for checking:
  'colourpicker', 'knitr', 'rmarkdown', 'shinydisconnect'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'jsonlite', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'brms', 'rstan'

Packages suggested but not available for checking:
  'ggplot2', 'shinystan', 'callr', 'rstanarm', 'lme4', 'testthat',
  'shinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'shiny', 'jsonlite', 'htmlwidgets'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'shiny', 'reactR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'glue', 'shiny'

Packages suggested but not available for checking:
  'shinydisconnect', 'shinyjs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glue', 'shiny'

Package suggested but not available for checking: 'shinycssloaders'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'htmltools', 'shinydashboard', 'fresh', 'lifecycle',
  'waiter'

Packages suggested but not available for checking:
  'styler', 'shinyAce', 'shinyWidgets', 'shinyEffects', 'shinyjqui',
  'knitr', 'rmarkdown', 'jsonlite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools', 'promises'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'glue', 'htmltools', 'shiny'

Package suggested but not available for checking: 'colourpicker'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shinyBS', 'shiny', 'shinyjs', 'plotly', 'htmlwidgets', 'htmltools'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'shiny', 'yaml', 'DT', 'R.utils', 'knitr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'shiny', 'shinydashboard'

Packages suggested but not available for checking:
  'shinydashboardPlus', 'bs4Dash', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'jsonlite', 'shiny'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'jsonlite', 'shiny', 'fs', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'reactable', 'shinyBS', 'shinyjs', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'heatmaply', 'shiny', 'htmltools', 'plotly', 'dplyr', 'xtable',
  'rmarkdown', 'readxl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'markdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shinyWidgets', 'httr'

Package which this enhances but not available for checking: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'yaml', 'jsonlite', 'stringr', 'R6', 'glue', 'shiny', 'rstudioapi'

Packages suggested but not available for checking:
  'knitr', 'googleLanguageR', 'rmarkdown', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'EBImage', 'R6', 'shiny', 'shinyjs'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'git2r', 'glue', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'lintr', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'shiny', 'shinydashboard', 'shinycssloaders', 'readxl',
  'mirt', 'psych', 'irtoys'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'deltaPlotR', 'difNLR', 'difR', 'dplyr', 'DT',
  'ggdendro', 'ggplot2', 'gridExtra', 'knitr', 'latticeExtra', 'lme4',
  'ltm', 'magrittr', 'mirt', 'msm', 'plotly', 'psych', 'psychometric',
  'purrr', 'rlang', 'rmarkdown', 'rstudioapi', 'scales', 'shiny',
  'shinyBS', 'shinydashboard', 'shinyjs', 'stringr', 'tibble', 'tidyr',
  'VGAM', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'htmltools', 'htmlwidgets', 'jsonlite'

Packages suggested but not available for checking:
  'ggplot2', 'highcharter', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'htmltools', 'jsonlite', 'shiny'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shinyAce', 'shinydisconnect', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pracma', 'pspline', 'shiny', 'shinyjs', 'ggplot2', 'reshape2',
  'gridExtra', 'mvtnorm', 'KGode', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'curl', 'dplyr', 'ggplot2', 'httpuv', 'jsonlite', 'magrittr',
  'rlang', 'scales', 'stringr', 'svglite', 'vroom', 'websocket', 'xml2'

Packages suggested but not available for checking:
  'getPass', 'glue', 'gtable', 'htmltools', 'lubridate', 'progress',
  'rmarkdown', 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'shiny', 'jsonlite', 'data.table', 'bit64', 'nanotime',
  'digest', 'anytime', 'DBI', 'RSQLite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'shiny', 'htmltools', 'DT', 'DBI', 'RSQLite', 'openssl',
  'R.utils', 'billboarder', 'scrypt'

Packages suggested but not available for checking:
  'keyring', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite', 'sass'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

Packages suggested but not available for checking:
  'shinyjqui', 'shinythemes', 'uchardet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'data.table', 'shiny', 'argonDash', 'argonR', 'shinyjs',
  'h2o', 'shinyWidgets', 'dygraphs', 'plotly', 'sparklyr', 'tidyr',
  'DT', 'ggplot2', 'shinycssloaders', 'lubridate'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'htmltools', 'jsonlite', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'cli', 'testthat', 'rstudioapi',
  'shinyWidgets', 'apexcharter', 'ggplot2', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'checkmate', 'RDML', 'shiny', 'stringr', 'whisker',
  'plotly', 'RColorBrewer'

Packages suggested but not available for checking: 'knitr', 'chipPCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

Packages suggested but not available for checking:
  'shinythemes', 'styler', 'formatR', 'uchardet', 'shinyjqui', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shinyjs', 'shiny', 'shinyWidgets', 'dplyr', 'DBI', 'dbplyr',
  'RSQLite', 'magrittr', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'glue', 'knitr', 'magrittr', 'pander', 'purrr', 'readr',
  'rlang', 'rstudioapi', 'shiny', 'stringr', 'styler', 'tibble',
  'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'mockery', 'spelling', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shinyjs', 'shiny', 'shinyBS', 'htmltools', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'glue', 'shiny', 'shinyjs'

Packages suggested but not available for checking: 'rlang', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pivottabler', 'shiny', 'openxlsx', 'colourpicker', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'shiny', 'ggplot2', 'DT',
  'shinythemes', 'ggthemes', 'Epi'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'shiny', 'htmltools', 'readr', 'urltools'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shinydashboard', 'shinyWidgets', 'shinyjs', 'shinyFiles',
  'shinyalert', 'data.table', 'colourpicker', 'plotly', 'ggplot2',
  'stringi', 'stringr', 'styler', 'dplyr', 'reshape2', 'fs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httpuv', 'mime', 'jsonlite', 'xtable', 'digest', 'htmltools', 'R6',
  'sourcetools', 'later', 'promises', 'crayon', 'rlang', 'fastmap',
  'withr', 'commonmark', 'glue', 'bslib', 'cachem', 'ellipsis',
  'lifecycle'

Packages suggested but not available for checking:
  'Cairo', 'testthat', 'knitr', 'markdown', 'rmarkdown', 'ggplot2',
  'reactlog', 'magrittr', 'shinytest', 'yaml', 'future', 'dygraphs',
  'ragg', 'showtext', 'sass'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcapture', 'shiny', 'shinycssloaders', 'conting', 'ggplot2',
  'reshape', 'CARE1', 'dga', 'LCMCR', 'ipc', 'future', 'promises',
  'coda', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'recipes', 'dplyr', 'purrr', 'stringr', 'shiny', 'miniUI',
  'shinyWidgets', 'shinyglide', 'sortable', 'rstudioapi', 'DT',
  'tidyr', 'esquisse'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools', 'R6'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgl', 'shiny'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'shiny', 'htmltools'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'shiny', 'uuid'

Packages suggested but not available for checking: 'rmarkdown', 'timevis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'htmltools', 'htmlwidgets', 'purrr', 'magrittr', 'jsonlite',
  'glue', 'R6'

Packages suggested but not available for checking:
  'dplyr', 'tibble', 'knitr', 'testthat', 'lintr', 'DT', 'covr',
  'leaflet', 'plotly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'digest', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'shiny', 'deSolve'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'bayesplot', 'colourpicker', 'DT', 'dygraphs', 'ggplot2',
  'gridExtra', 'gtools', 'markdown', 'reshape2', 'rsconnect', 'rstan',
  'shinyjs', 'shinythemes', 'threejs', 'xtable', 'xts'

Packages suggested but not available for checking:
  'coda', 'knitr', 'rmarkdown', 'rstanarm', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'shinyjs', 'sass'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'readr', 'stringr', 'tidyr', 'visNetwork'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'callr', 'crayon', 'debugme', 'digest', 'htmlwidgets',
  'httpuv', 'httr', 'jsonlite', 'parsedate', 'pingr', 'R6', 'rematch',
  'rlang', 'rstudioapi', 'shiny', 'testthat', 'webdriver', 'withr'

Packages suggested but not available for checking:
  'flexdashboard', 'globals', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'htmlwidgets', 'jsonlite', 'stringr', 'promises'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bslib', 'sass', 'shiny', 'htmltools', 'jsonlite'

Packages suggested but not available for checking:
  'shinydashboard', 'testthat', 'covr', 'shinydashboardPlus',
  'bs4Dash', 'argonR', 'argonDash', 'tablerDash', 'ggplot2', 'DT',
  'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'future', 'shiny', 'R6'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'chk', 'lifecycle', 'shiny', 'ypr', 'shinyjs', 'dplyr', 'purrr',
  'readr', 'ggplot2', 'magrittr', 'DT', 'bsplus', 'waiter'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
shrink.estim: no visible global function definition for 'cov'
shrink.estim: no visible global function definition for 'cor'
shrink.estim: no visible global function definition for 'cov2cor'
targetCor: no visible global function definition for 'cor.test'
targetCor: no visible global function definition for 'cor'
targetCor: no visible global function definition for 'sd'
targetCor: no visible global function definition for 'cov'
targetD: no visible binding for global variable 'var'
targetF: no visible global function definition for 'cov'
targetF: no visible global function definition for 'cor'
targetG: no visible global function definition for 'cor'
targetG: no visible global function definition for 'sd'
targetG: no visible global function definition for 'cov'
targetGpos: no visible global function definition for 'cor'
targetGpos: no visible global function definition for 'sd'
targetGpos: no visible global function definition for 'cov'
targetGstar: no visible global function definition for 'cor'
targetGstar: no visible global function definition for 'sd'
targetGstar: no visible global function definition for 'cov'
Undefined global functions or variables:
  cor cor.test cov cov2cor sd var
Consider adding
  importFrom("stats", "cor", "cor.test", "cov", "cov2cor", "sd", "var")
to your NAMESPACE file.
Package required but not available: 'PBSmapping'

Packages suggested but not available for checking:
  'apcluster', 'ape', 'dbscan', 'e1071', 'effsize', 'ips', 'kernlab',
  'mclust', 'meanShiftR', 'phangorn', 'randomForest', 'smirnov',
  'StatMatch', 'tapkee', 'tree', 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glasso', 'mvtnorm', 'capushe', 'GGMselect', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'curl', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rstudioapi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'ggplot2', 'tidyr', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'MplusAutomation', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'LambertW', 'tidyr', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coin', 'CompQuadForm', 'robustbase'

Packages suggested but not available for checking:
  'knitr', 'energy', 'mvoutlier', 'shiny', 'jsonlite', 'interp', 'MBA',
  'bs4Dash'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/shotGroups.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'png'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sysfonts'

Package suggested but not available for checking: 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sysfonts', 'showtextdb'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc', 'curl', 'jsonlite'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'maptools', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rms', 'mfp'

Packages suggested but not available for checking:
  'aod', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'GIGrvg', 'stochvol', 'coda', 'zoo', 'RcppArmadillo',
  'RcppProgress'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'fastclime', 'pracma', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'httptest', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'hdrcde', 'coda', 'bayesm', 'mnormt', 'spatstat'

Depends: includes the non-default packages:
  'hdrcde', 'coda', 'MASS', 'bayesm', 'mnormt', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mclust'

Packages suggested but not available for checking: 'edgeR', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat', 'hdrcde', 'mnormt', 'rjags', 'spatstat.geom',
  'spatstat.utils', 'tidyr', 'dplyr', 'ggplot2', 'magrittr', 'purrr'

Packages suggested but not available for checking:
  'coda', 'ellipse', 'knitr', 'rmarkdown', 'tidyverse', 'viridis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'minpack.lm', 'fBasics', 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'cowplot', 'testthat', 'vdiffr', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'tidyr', 'tibble', 'dplyr', 'magrittr', 'purrr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'corpcor', 'mmap', 'ade4', 'infotheo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'memoise', 'multicool', 'doParallel', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'network', 'igraph', 'gridBase', 'ggmap', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'RCurl', 'rjson', 'rvest', 'stringr', 'xml2'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pcalg', 'igraph', 'RBGL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ramcmc', 'smfsb', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
.cluster: no visible global function definition for 'kmeans'
.plot.sigclust: no visible global function definition for 'par'
.plot.sigclust: no visible global function definition for 'density'
.plot.sigclust: no visible global function definition for 'runif'
.plot.sigclust: no visible global function definition for 'dnorm'
.plot.sigclust: no visible global function definition for 'lines'
.plot.sigclust: no visible global function definition for 'points'
.plot.sigclust: no visible global function definition for 'title'
.plot.sigclust: no visible global function definition for 'text'
.plot.sigclust: no visible global function definition for 'qnorm'
.plot.sigclust: no visible global function definition for 'abline'
.plot.sigclust: no visible global function definition for 'quantile'
.plot.sigclust: no visible global function definition for 'legend'
.simnull: no visible global function definition for 'rnorm'
.vareigen: no visible global function definition for 'mad'
.vareigen: no visible global function definition for 'cov'
sigclust: no visible global function definition for 'sd'
sigclust: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  abline cov density dnorm kmeans legend lines mad par pnorm points
  qnorm quantile rnorm runif sd text title
Consider adding
  importFrom("graphics", "abline", "legend", "lines", "par", "points",
             "text", "title")
  importFrom("stats", "cov", "density", "dnorm", "kmeans", "mad",
             "pnorm", "qnorm", "quantile", "rnorm", "runif", "sd")
to your NAMESPACE file.
Packages required but not available:
  'formula.tools', 'msm', 'plyr', 'survey'

Packages suggested but not available for checking:
  'car', 'data.table', 'ggplot2', 'kableExtra', 'knitr', 'readxl',
  'reshape2', 'rmarkdown', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'randomForest', 'stringr', 'pbivnorm', 'Formula', 'maxLik', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'dplyr', 'magrittr', 'shiny', 'jsonlite', 'igraph',
  'htmltools', 'purrr', 'scales', 'crosstalk'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'igraph', 'jsonlite', 'RColorBrewer'

Packages suggested but not available for checking:
  'magrittr', 'knitr', 'rmarkdown', 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'cowplot', 'data.table', 'dplyr', 'furrr', 'future',
  'ggplot2', 'ggpubr', 'maftools', 'magrittr', 'NMF', 'purrr', 'Rcpp',
  'rlang', 'tidyr'

Packages suggested but not available for checking:
  'Biobase', 'Biostrings', 'BSgenome', 'BSgenome.Hsapiens.UCSC.hg19',
  'circlize', 'covr', 'digest', 'GenomicRanges', 'GenSA', 'ggalluvial',
  'ggcorrplot', 'ggfittext', 'ggplotify', 'ggrepel', 'IRanges',
  'knitr', 'lpSolve', 'markdown', 'matrixStats', 'nnls', 'patchwork',
  'pheatmap', 'quadprog', 'R.utils', 'RColorBrewer', 'reticulate',
  'rmarkdown', 'roxygen2', 'scales', 'synchronicity', 'testthat',
  'tibble', 'UCSCXenaTools', 'copynumber'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'ggplot2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'GenomeInfoDb', 'GenomicRanges', 'IRanges', 'Rsamtools', 'S4Vectors',
  'Seurat', 'SeuratObject', 'data.table', 'dplyr', 'future',
  'future.apply', 'ggplot2', 'ggseqlogo', 'irlba', 'pbapply', 'tidyr',
  'patchwork', 'BiocGenerics', 'Biostrings', 'ggrepel', 'stringi',
  'ggbio', 'biovizBase', 'AnnotationFilter', 'fastmatch', 'lsa',
  'RcppRoll', 'scales', 'Rcpp', 'ggforce'

Packages suggested but not available for checking:
  'testthat', 'chromVAR', 'SummarizedExperiment', 'TFBSTools',
  'motifmatchr', 'BSgenome', 'shiny', 'miniUI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'neuralnet', 'lme4', 'pbmcapply', 'Seurat', 'RJSONIO', 'igraph',
  'jsonlite', 'RColorBrewer'

Packages suggested but not available for checking:
  'hdf5r', 'rhdf5', 'knitr', 'rmarkdown', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'seqinr', 'shiny', 'Rcpp'

Packages suggested but not available for checking:
  'DT', 'rmarkdown', 'shinythemes'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'pracma'
Package unavailable to check Rd xrefs: 'matlab'
Running examples in 'signal-Ex.R' failed
The error most likely occurred in:

> ### Name: roots
> ### Title: Roots of a polynomial
> ### Aliases: roots
> ### Keywords: math
> 
> ### ** Examples
> 
> roots(1:3)
[1] -1+1.414214i -1-1.414214i
> polyroot(3:1) # should be the same
[1] -1+1.414214i -1-1.414214i
> poly(roots(1:3))
[1] 1+0i 2+0i 3-0i
> 
> roots(1:3, method="eigen") # using eigenvalues
Error in roots(1:3, method = "eigen") : 
  method 'eigen' is only available if package 'pracma' is installed
Execution halted
Running 'TestLevinson.R'
  Comparing 'TestLevinson.Rout' to 'TestLevinson.Rout.save' ... OK
  Running 'signal.R'
Running the tests in 'tests/signal.R' failed.
Last 13 lines of output:
  > Test216 <- signal:::postpad(c(1,2), 4)
  > Test217 <- signal:::postpad(c(1,-2), 3)
  > Test218 <- signal:::postpad(c(1,2), 3)
  > # ppval see pchip
  > # remez
  > Test219 <- remez(15, c(0, 0.3, 0.4, 1), c(1,1,0,0))        
  > # resample
  > Test220 <- resample(sin(2*pi*(0:10)/5), 1, 0.05)
  > # roots
  > Test221 <- roots(1:3)
  > Test222 <- poly(roots(1:3))   
  > Test223 <- roots(1:3, method="eigen") 
  Error in roots(1:3, method = "eigen") : 
    method 'eigen' is only available if package 'pracma' is installed
  Execution halted
signmedian.test: no visible global function definition for 'median'
signmedian.test: no visible global function definition for 'binom.test'
signmedian.test: no visible global function definition for 'pbinom'
signmedian.test: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  binom.test median pbinom pnorm
Consider adding
  importFrom("stats", "binom.test", "median", "pbinom", "pnorm")
to your NAMESPACE file.
Packages required but not available: 'igraph', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'ggplot2', 'ggraph', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'survcomp', 'GSVA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'scales', 'rlang'

Packages suggested but not available for checking:
  'ggplot2', 'dplyr', 'ggrepel', 'testthat', 'knitr', 'rmarkdown',
  'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gridGraphics', 'biclust', 'gplots', 'ComplexHeatmap', 'RankProd',
  'fmsb', 'moments', 'mclust', 'GSVA', 'circlize'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'wrapr'

Packages suggested but not available for checking:
  'pwr', 'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'phylobase', 'phyext2', 'RColorBrewer', 'phyloseq', 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'gdata', 'xtable'
'library' or 'require' calls in package code:
  'gdata' 'splines'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
plot.SII: no visible global function definition for 'lines'
plot.SII: no visible global function definition for 'abline'
plot.SII: no visible global function definition for 'legend'
sii : approx.l: no visible global function definition for 'approx'
sii.excel: no visible global function definition for 'predict'
sii.excel : approx.l: no visible global function definition for
  'approx'
Undefined global functions or variables:
  abline approx legend lines predict
Consider adding
  importFrom("graphics", "abline", "legend", "lines")
  importFrom("stats", "approx", "predict")
to your NAMESPACE file.
Packages required but not available:
  'sf', 'lme4', 'sp', 'raster', 'ggplot2', 'ggforce', 'fasterize',
  'reshape2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'Hmisc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'glasso', 'reshape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'gibble', 'purrr', 'rlang', 'decido', 'tibble', 'unjoin',
  'magrittr', 'gridBase', 'crsmeta'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'sp', 'testthat', 'trip', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'scalreg', 'glmnet', 'hdi', 'SIS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'hapsim', 'stringr', 'readr'

Packages suggested but not available for checking:
  'knitr', 'prettydoc', 'testthat', 'gplots', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'prettydoc', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'ggplot2', 'Rdpack', 'spam', 'tidyverse', 'tibble', 'dplyr',
  'magrittr', 'matrixcalc'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'vegan'

Packages suggested but not available for checking:
  'gplots', 'geoR', 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'tibble', 'ggplot2', 'tidyr', 'mvtnorm',
  'RColorBrewer', 'Rcpp', 'RcppXPtrUtils', 'coda', 'RcppArmadillo'

Packages suggested but not available for checking: 'GGally', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'multcomp', 'mratios'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'evd'

Packages suggested but not available for checking:
  'bookdown', 'gee', 'knitr', 'markdown', 'multgee', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'SimMultiCorrData', 'BB', 'nleqslv', 'mvtnorm', 'VGAM', 'triangle',
  'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'printr', 'bookdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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  'extraDistr', 'RPushbullet', 'renv', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'crayon', 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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  'geepack', 'rmarkdown', 'future', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'rstudioapi', 'Rdpack', 'tidyr'

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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'rlang'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
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  'GenomicRanges', 'IRanges', 'XVector'

Package suggested but not available for checking: 'BSgenome.Hsapiens.UCSC.hg38'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R2jags', 'ggplot2', 'compositions', 'reshape2', 'viridis',
  'bayesplot', 'checkmate'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'glmnet', 'doParallel', 'foreach', 'randomForestSRC'

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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'htmlwidgets', 'shiny', 'shinydashboard'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'data.table', 'dplyr', 'ggplot2', 'gridExtra', 'lazyeval', 'stringr',
  'quadprog'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
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(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
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Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'readr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'verification'
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'hdrcde', 'locfit', 'MCMCpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'DT', 'forcats', 'ggplot2', 'htmltools', 'leaflet',
  'leafpop', 'leaflet.extras', 'janitor', 'jsonlite', 'lubridate',
  'magrittr', 'plotly', 'readr', 'rgdal', 'rlang', 'rmarkdown',
  'scales', 'sf', 'shiny', 'shinycssloaders', 'stars', 'stringr',
  'tibble', 'tidyr', 'viridis'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'doParallel', 'foreach', 'colorspace', 'VIM', 'party', 'EnvStats',
  'fitdistrplus', 'ranger', 'wrswoR', 'data.table'

Packages suggested but not available for checking:
  'haven', 'microbenchmark', 'stringr', 'testthat', 'surveysd',
  'sampling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'RLRsim', 'stringr', 'car'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'magrittr', 'rlang'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
  'Rmpi', 'Hmisc', 'copula', 'foreach', 'doParallel', 'fGarch',
  'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'lavaan'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fdrtool'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking:
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  'stringr', 'testthat', 'covr', 'badger'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking:
  'covr', 'dplyr', 'formatR', 'gee', 'ggplot2', 'gridExtra',
  'hedgehog', 'knitr', 'magrittr', 'ordinal', 'pracma', 'rmarkdown',
  'scales', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'raster', 'rgeos', 'data.table', 'magrittr', 'progress',
  'doParallel', 'foreach', 'plotly', 'rlang'

Packages suggested but not available for checking:
  'fields', 'rmarkdown', 'flexdashboard', 'shiny', 'crosstalk',
  'htmltools', 'viridis', 'lme4', 'ggplot2', 'INLA', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
Packages unavailable to check Rd xrefs: 'BB', 'eha', 'flexsurv'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'metafor', 'mvtnorm', 'ICC', 'miscTools', 'car', 'plyr', 'corpcor',
  'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'tidyr', 'tibble', 'vctrs'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'robcor', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ks', 'mvtnorm'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'magrittr'

Packages suggested but not available for checking:
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  'mvtnorm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lpSolve', 'pcaPP', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'wBoot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'arrangements', 'matrixStats', 'igraph', 'crqa', 'plot3D', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rstudioapi', 'shiny', 'miniUI', 'sos', 'stringi', 'yaml', 'crayon',
  'cli', 'rematch2'

Packages suggested but not available for checking: 'roxygen2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'CholWishart', 'withr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'magrittr', 'dplyr', 'tidyr', 'rlang', 'tidyselect'

Packages suggested but not available for checking:
  'spelling', 'shiny', 'ggplot2', 'purrrlyr', 'testthat', 'markdown',
  'knitr', 'rmarkdown', 'prettydoc', 'kableExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'SummarizedExperiment', 'SingleCellExperiment',
  'SeuratObject', 'Rtsne', 'cowplot', 'testthat', 'wrswoR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'fdrtool'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
plotBGpvalues: no visible global function definition for 'par'
plotBGpvalues: no visible global function definition for 'title'
plotBGpvalues: no visible global function definition for 'axis'
plotBGpvalues: no visible binding for global variable 'abline'
plotBGpvalues: no visible global function definition for 'box'
plotCGpvalues: no visible global function definition for 'par'
plotCGpvalues: no visible global function definition for 'title'
plotCGpvalues: no visible global function definition for 'axis'
plotCGpvalues: no visible binding for global variable 'abline'
plotCGpvalues: no visible global function definition for 'box'
plotDAGpvalues: no visible global function definition for 'par'
plotDAGpvalues: no visible global function definition for 'title'
plotDAGpvalues: no visible global function definition for 'axis'
plotDAGpvalues: no visible binding for global variable 'abline'
plotDAGpvalues: no visible global function definition for 'box'
plotUGpvalues: no visible global function definition for 'par'
plotUGpvalues: no visible global function definition for 'title'
plotUGpvalues: no visible global function definition for 'axis'
plotUGpvalues: no visible binding for global variable 'abline'
plotUGpvalues: no visible global function definition for 'box'
simpvalueVec: no visible binding for global variable 'pnorm'
sinBG: no visible global function definition for 'cov2cor'
sinCG : sinAMP: no visible global function definition for 'cov2cor'
sinCG : sinLWF: no visible global function definition for 'cov2cor'
sinDAG: no visible global function definition for 'cov2cor'
sinUG: no visible global function definition for 'cov2cor'
Undefined global functions or variables:
  abline axis box cov2cor par pnorm title
Consider adding
  importFrom("graphics", "abline", "axis", "box", "par", "title")
  importFrom("stats", "cov2cor", "pnorm")
to your NAMESPACE file.
Packages required but not available:
  'PNADcIBGE', 'POFIBGE', 'PNSIBGE', 'COVIDIBGE', 'tidyverse', 'cli',
  'purrr', 'rstudioapi', 'png', 'tibble'

Packages suggested but not available for checking:
  'survey', 'readr', 'dplyr', 'magrittr', 'projmgr', 'httr', 'RCurl',
  'timeDate', 'readxl', 'convey'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'spatstat'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/cindex.Rnw'
   'inst/doc/gentle.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'zoo', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'systemfit', 'psych', 'igraph', 'matrixcalc', 'numDeriv', 'stringr',
  'Rsolnp', 'dplyr', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CDM', 'Rcpp', 'TAM', 'pbv', 'RcppArmadillo'

Packages suggested but not available for checking:
  'coda', 'igraph', 'lavaan', 'lavaan.survey', 'miceadds', 'mirt',
  'mvtnorm', 'pbivnorm', 'pbv', 'psych', 'sfsmisc', 'sm', 'survey'

Package which this enhances but not available for checking: 'immer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ROCR', 'ggplot2', 'glmnet', 'RcppEigen'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'R.matlab', 'R.methodsS3'

Packages suggested but not available for checking:
  'graph', 'Rgraphviz', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'zoo', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'doParallel', 'expm', 'RSpectra', 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'XRJulia', 'truncnorm', 'tictoc', 'dplyr', 'magrittr', 'stringr',
  'XR', 'jsonlite', 'tidyr', 'ggpubr', 'ggplot2', 'rlang', 'igraph',
  'scales'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'ncvreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'openxlsx', 'rlang', 'shiny', 'stringi', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forcats', 'ggplot2', 'glue', 'purrr', 'rlang', 'rsample',
  'tibble', 'tidyr', 'magrittr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
* DONE
Status: 1 ERROR
ION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmulti', 'solaR', 'hyfo', 'hydroGOF', 'RColorBrewer', 'ggplot2',
  'ggpubr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'ymlthis', 'magrittr', 'yaml', 'stringr',
  'lubridate', 'rmarkdown', 'rlist', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'spelling', 'pkgdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'scatterplot3d'

Packages suggested but not available for checking:
  'rgl', 'igraph', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'sitree', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'latticeExtra'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'foreach', 'glmnet', 'pROC', 'varhandle'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'qcc', 'ggplot2', 'reshape2', 'nortest', 'e1071', 'scales',
  'testthat', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'msm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'matrixStats'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'dplyr', 'ggplot2'
Running examples in 'SiZer-Ex.R' failed
The error most likely occurred in:

> ### Name: Arkansas
> ### Title: Time Series of Macroinvertabrates Abundance in the Arkansas
> ###   River.
> ### Aliases: Arkansas
> ### Keywords: datasets
> 
> ### ** Examples
> 
> require(ggplot2)
Loading required package: ggplot2
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'ggplot2'
> 
> data(Arkansas)
> ggplot(Arkansas, aes(x=year, y=sqrt.mayflies)) + 
+    geom_point()
Error in ggplot(Arkansas, aes(x = year, y = sqrt.mayflies)) : 
  could not find function "ggplot"
Execution halted
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'insight'

Packages suggested but not available for checking:
  'dplyr', 'haven', 'magrittr', 'sjmisc', 'sjPlot', 'knitr', 'rlang',
  'rmarkdown', 'snakecase', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'insight', 'magrittr', 'purrr', 'rlang', 'sjlabelled',
  'tidyselect'

Packages suggested but not available for checking:
  'ggplot2', 'haven', 'mice', 'sjPlot', 'sjstats', 'knitr',
  'rmarkdown', 'stringdist', 'testthat', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bayestestR', 'dplyr', 'effectsize', 'ggeffects', 'ggplot2', 'knitr',
  'insight', 'parameters', 'performance', 'purrr', 'rlang', 'scales',
  'sjlabelled', 'sjmisc', 'sjstats', 'tidyr'

Packages suggested but not available for checking:
  'brms', 'car', 'clubSandwich', 'cowplot', 'GPArotation', 'ggrepel',
  'glmmTMB', 'gridExtra', 'ggridges', 'httr', 'lme4', 'nFactors',
  'pscl', 'psych', 'rmarkdown', 'rstanarm', 'sandwich', 'survey',
  'TMB', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bayestestR', 'broom', 'dplyr', 'effectsize', 'emmeans', 'insight',
  'lme4', 'magrittr', 'modelr', 'parameters', 'performance', 'purrr',
  'rlang', 'sjlabelled', 'sjmisc', 'tidyr'

Packages suggested but not available for checking:
  'brms', 'car', 'coin', 'ggplot2', 'pscl', 'pwr', 'sjPlot', 'survey',
  'rstan', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'SPAtest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'parallel'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
cvskda: no visible global function definition for 'detectCores'
cvskda: no visible global function definition for 'makeCluster'
cvskda: no visible global function definition for 'clusterApplyLB'
cvskda: no visible global function definition for 'mclapply'
cvskda: no visible global function definition for 'stopCluster'
Undefined global functions or variables:
  clusterApplyLB detectCores makeCluster mclapply stopCluster
Packages required but not available:
  'Rdpack', 'broom', 'pracma', 'gmp', 'Rmpfr', 'arrangements',
  'cubature', 'quantreg', 'CompQuadForm', 'qpdf', 'berryFunctions',
  'bazar', 'expm', 'mvtnorm', 'data.table', 'dplyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'lmtest', 'car', 'tseries',
  'tibble', 'het.test', 'testthat', 'mlbench'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'VGAM'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/skellam.rnw'
(Is a VignetteBuilder field missing?)
Package unavailable to check Rd xrefs: 'VGAM'
Files named as vignettes but with no recognized vignette engine:
   'vignettes/skellam.rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available:
  'jpeg', 'png', 'readbitmap', 'downloader', 'imager', 'magrittr',
  'stringr', 'dplyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'rlang', 'purrr', 'rstudioapi', 'glue', 'htmltools',
  'base64enc', 'jsonlite', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'zipfR', 'optimr', 'purrr', 'matrixStats', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DistributionUtils', 'GeneralizedHyperbolic'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'moments', 'mvtnorm', 'numDeriv', 'purrr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
dskt: no visible global function definition for 'dt'
pskt: no visible global function definition for 'pt'
qskt: no visible global function definition for 'qt'
rskt: no visible global function definition for 'runif'
Undefined global functions or variables:
  dt pt qt runif
Consider adding
  importFrom("stats", "dt", "pt", "qt", "runif")
to your NAMESPACE file.
Package required but not available: 'matrixcalc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'crayon', 'dplyr', 'knitr', 'magrittr', 'purrr', 'repr',
  'rlang', 'stringr', 'tibble', 'tidyr', 'tidyselect', 'vctrs', 'withr'

Packages suggested but not available for checking:
  'covr', 'data.table', 'dtplyr', 'extrafont', 'lubridate',
  'rmarkdown', 'sf', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'extraDistr', 'hash', 'LaplacesDemon', 'mcmcse', 'numDeriv', 'spam'

Package suggested but not available for checking: 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'clue'

Package which this enhances but not available for checking: 'kmndirs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'data.table', 'plyr', 'Rcpp', 'RcppParallel',
  'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'iterators', 'lme4', 'Rcpp', 'rintrojs', 'shinythemes',
  'foreach', 'doParallel', 'knitr', 'kableExtra', 'doRNG', 'future',
  'promises', 'shinyjs', 'car', 'viridis', 'magrittr', 'lmerTest',
  'lazyeval', 'base64enc', 'crayon', 'RcppEigen'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgeos', 'RColorBrewer', 'sp', 'GD', 'rtop', 'FitAR'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'igraph', 'dplyr', 'ggplot2', 'ggrepel', 'stringr',
  'maps', 'httr', 'geosphere', 'leaflet'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'kableExtra', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'EBImage'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'ggplot2', 'dplyr', 'xtable', 'tibble',
  'magrittr', 'memoise', 'cachem'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'texPreview'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages which this enhances but not available for checking:
  'SparseM', 'spam'
Packages required but not available: 'pheatmap', 'pracma'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'lcmm', 'globaltest', 'magic', 'reshape2', 'ggplot2',
  'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'corpcor', 'forecast', 'gsarima', 'fGarch', 'imputeTS',
  'MTS', 'TSclust', 'tsoutliers', 'matrixcalc', 'rnn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
slcestimates: no visible global function definition for 'par'
slcestimates: no visible global function definition for 'abline'
slcestimates: no visible global function definition for 'lines'
slcestimates: no visible global function definition for 'axis'
slcestimates: no visible global function definition for 'points'
slcestimates: no visible global function definition for 'title'
Undefined global functions or variables:
  abline axis lines par points title
Consider adding
  importFrom("graphics", "abline", "axis", "lines", "par", "points",
             "title")
to your NAMESPACE file.
Package unavailable to check Rd xrefs: 'RcmdrPlugin.SLC'
'LazyData' is specified without a 'data' directory
Package required but not available: 'lmom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'plyr', 'stringr', 'viridis', 'devtools'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'behavr', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jrc', 'cowplot', 'httpuv', 'jsonlite', 'scales', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'e1071', 'ggplot2', 'ggthemes', 'gridExtra', 'Hmisc', 'reshape2',
  'stringr', 'doParallel', 'caret', 'corrplot', 'foreach'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'data.table', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'agricolae', 'car', 'gmodels', 'leaps', 'mosaic'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/chapter01-HortonMosaic.Rnw'
   'inst/doc/chapter02-HortonMosaic.Rnw'
   'inst/doc/chapter03-HortonMosaic.Rnw'
   'inst/doc/chapter04-HortonMosaic.Rnw'
   'inst/doc/chapter05-HortonMosaic.Rnw'
   'inst/doc/chapter06-HortonMosaic.Rnw'
   'inst/doc/chapter07-HortonMosaic.Rnw'
   'inst/doc/chapter08-HortonMosaic.Rnw'
   'inst/doc/chapter09-HortonMosaic.Rnw'
   'inst/doc/chapter10-HortonMosaic.Rnw'
   'inst/doc/chapter11-HortonMosaic.Rnw'
   'inst/doc/chapter12-HortonMosaic.Rnw'
   'inst/doc/chapter13-HortonMosaic.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/chapter01-HortonMosaic.Rnw'
   'vignettes/chapter02-HortonMosaic.Rnw'
   'vignettes/chapter03-HortonMosaic.Rnw'
   'vignettes/chapter04-HortonMosaic.Rnw'
   'vignettes/chapter05-HortonMosaic.Rnw'
   'vignettes/chapter06-HortonMosaic.Rnw'
   'vignettes/chapter07-HortonMosaic.Rnw'
   'vignettes/chapter08-HortonMosaic.Rnw'
   'vignettes/chapter09-HortonMosaic.Rnw'
   'vignettes/chapter10-HortonMosaic.Rnw'
   'vignettes/chapter11-HortonMosaic.Rnw'
   'vignettes/chapter12-HortonMosaic.Rnw'
   'vignettes/chapter13-HortonMosaic.Rnw'
(Is a VignetteBuilder field missing?)
Skipping vignette re-building
Packages suggested but not available for checking:
  'CCA', 'Hmisc', 'agricolae', 'car', 'gmodels', 'knitr', 'leaps',
  'mosaic', 'multcomp'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/chapter01-HortonMosaic.Rnw'
   'inst/doc/chapter02-HortonMosaic.Rnw'
   'inst/doc/chapter03-HortonMosaic.Rnw'
   'inst/doc/chapter04-HortonMosaic.Rnw'
   'inst/doc/chapter05-HortonMosaic.Rnw'
   'inst/doc/chapter06-HortonMosaic.Rnw'
   'inst/doc/chapter07-HortonMosaic.Rnw'
   'inst/doc/chapter08-HortonMosaic.Rnw'
   'inst/doc/chapter09-HortonMosaic.Rnw'
   'inst/doc/chapter10-HortonMosaic.Rnw'
   'inst/doc/chapter11-HortonMosaic.Rnw'
   'inst/doc/chapter12-HortonMosaic.Rnw'
   'inst/doc/chapter13-HortonMosaic.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/chapter01-HortonMosaic.Rnw'
   'vignettes/chapter02-HortonMosaic.Rnw'
   'vignettes/chapter03-HortonMosaic.Rnw'
   'vignettes/chapter04-HortonMosaic.Rnw'
   'vignettes/chapter05-HortonMosaic.Rnw'
   'vignettes/chapter06-HortonMosaic.Rnw'
   'vignettes/chapter07-HortonMosaic.Rnw'
   'vignettes/chapter08-HortonMosaic.Rnw'
   'vignettes/chapter09-HortonMosaic.Rnw'
   'vignettes/chapter10-HortonMosaic.Rnw'
   'vignettes/chapter11-HortonMosaic.Rnw'
   'vignettes/chapter12-HortonMosaic.Rnw'
   'vignettes/chapter13-HortonMosaic.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available: 'Rcpp', 'coda', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'raster', 'sf', 'xml2'

Packages suggested but not available for checking:
  'covr', 'knitr', 'pkgdown', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rdpack', 'numDeriv'

Packages suggested but not available for checking:
  'knitr', 'captioner', 'formatR', 'rcrossref', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'alphahull', 'igraph', 'lle'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'lifecycle', 'xml2', 'base64enc', 'htmlwidgets'

Packages suggested but not available for checking:
  'jsonlite', 'knitr', 'pdftools', 'rmarkdown', 'svglite', 'leaflet',
  'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'ellipsis', 'glue', 'rlang', 'vctrs', 'warp'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'knitr', 'lubridate', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'raster', 'viridisLite'

Package suggested but not available for checking: 'jpeg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DCCA', 'PerformanceAnalytics', 'nonlinearTseries', 'TSEntropies'

Packages suggested but not available for checking: 'xts', 'zoo', 'quantmod'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'lme4', 'jmcm', 'gee', 'ggplot2', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'glmnet', 'bigmemory', 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'purrr', 'png'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ltsa', 'capushe', 'sandwich', 'expm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'crayon', 'purrr', 'rlang', 'tibble'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'caret', 'covr', 'glmnet', 'knitr', 'rmarkdown', 'spelling',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'crayon', 'ape', 'memoise'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SnowballC', 'NLP', 'openNLP'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'gam'
Package unavailable to check Rd xrefs: 'gam'
Running examples in 'slp-Ex.R' failed
The error most likely occurred in:

> ### Name: slp.gam
> ### Title: Generate a Basis Matrix for Discrete Prolate Spheroidal
> ###   (Slepian) Sequences
> ### Aliases: slp.gam slp
> ### Keywords: models smooth regression Slepian gam
> 
> ### ** Examples
> 
>     # Examples using pkg:gam
>     library("gam")
Error in library("gam") : there is no package called 'gam'
Execution halted
Packages required but not available: 'geepack', 'VGAM', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'rslurm', 'knitr', 'rmarkdown', 'covr', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'hitandrun'
Package unavailable to check Rd xrefs: 'hitandrun'
Packages required but not available:
  'plotrix', 'colorspace', 'e1071', 'polynom', 'Hmisc', 'nnls',
  'weights', 'ellipse', 'wordcloud', 'candisc', 'foreach', 'doParallel'

Packages suggested but not available for checking:
  'knitr', 'prefmod', 'MPsychoR', 'calibrate', 'ggplot2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/smacof.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat.geom', 'spatstat.core', 'spatstat', 'plotrix', 'abind',
  'pbapply', 'sp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'SSBtools'

Packages suggested but not available for checking:
  'knitr', 'kableExtra', 'sdcHierarchies', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'nloptr', 'Rcpp', 'RcppParallel', 'doParallel', 'foreach', 'doSNOW',
  'numDeriv', 'EnvStats', 'RcppGSL'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'rappdirs', 'raster', 'rhdf5', 'rvest', 'xml2'

Packages suggested but not available for checking:
  'knitr', 'rgdal', 'rmarkdown', 'roxygen2', 'sp', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'data.table'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'ggplot2', 'sampling', 'scales', 'rmarkdown', 'ISLR', 'data.table',
  'gridExtra', 'GGally', 'qpdf'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'covr', 'psych', 'DataExplorer'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'httr', 'htmltools', 'jsonlite', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'leaflet', 'magrittr', 'sf'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'futile.logger', 'FNN', 'stinepack', 'zoo'

Packages suggested but not available for checking:
  'stringr', 'knitr', 'rmarkdown', 'ROCR', 'randomForest', 'caret',
  'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'covr', 'sn', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'rjags', 'maptools', 'mapdata', 'PBSmapping', 'gWidgets2',
  'gWidgets2RGtk2', 'gstat', 'plyr', 'sp', 'maps', 'spdep', 'marmap',
  'shape', 'jpeg', 'ggplot2', 'sqldf', 'gsubfn', 'chron', 'reshape2',
  'ROCR', 'caret', 'nnls', 'mtsdi', 'gridExtra', 'rgeos', 'scales',
  'ggthemes', 'vegan', 'ggrepel', 'rgdal', 'RColorBrewer', 'jsonlite',
  'igraph', 'mapproj'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'bootSVD', 'data.table', 'foreach', 'Rfast', 'RSpectra', 'vegan',
  'vroom', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sva', 'isva', 'RSpectra', 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sqldf', 'partykit', 'Formula', 'gsubfn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'PMA', 'pbapply', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'VGAM', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mitools', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
File 'smco/R/smco.R':
  .onAttach calls:
    cat(paste("This is smco package", version, "\n"))

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.

smco: no visible global function definition for 'runif'
smco: no visible global function definition for 'rnorm'
smco: no visible global function definition for 'qnorm'
smco: no visible global function definition for 'pnorm'
smco: no visible global function definition for 'optim'
Undefined global functions or variables:
  optim pnorm qnorm rnorm runif
Consider adding
  importFrom("stats", "optim", "pnorm", "qnorm", "rnorm", "runif")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
File 'SMC/R/zzz.R':
  .onLoad calls:
    packageStartupMessage("##\n", "## Sequential Monte Carlo Package (SMC)\n",     "##\n", "## Functionality: sequential Monte Carlo (SMC) or sequential importance\n",     "## sampling (SIS) or hidden Markov models (HMM), particle filter (PF)\n",     "## and auxiliary particle filter (APF)\n", "##\n", "## Use: \"help(package = SMC)\" at the R prompt for more info\n",     "##\n", "## Copyright (C) 2006-", this.year, " Gopi Goswami\n",     "##\n", "##    Created by: Gopi Goswami <goswami@stat.harvard.edu>\n",     "## Maintained by: Gopi Goswami <grgoswami@gmail.com>\n",     "##\n")

See section 'Good practice' in '?.onAttach'.

.MHUpdateFuncGen.PF : MHUpdateFunc: no visible global function
  definition for 'runif'
MarkovSwitchingFuncGenerator : generateNextStreamsFunc: no visible
  global function definition for 'runif'
MarkovSwitchingFuncGenerator: no visible global function definition for
  'rnorm'
MarkovSwitchingFuncGenerator: no visible global function definition for
  'runif'
MarkovSwitchingFuncGenerator : logObsDensFunc: no visible global
  function definition for 'dnorm'
MarkovSwitchingFuncGenerator : propagateFunc: no visible global
  function definition for 'dnorm'
MarkovSwitchingFuncGenerator : propagateFunc: no visible global
  function definition for 'runif'
Undefined global functions or variables:
  dnorm rnorm runif
Consider adding
  importFrom("stats", "dnorm", "rnorm", "runif")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
em: no visible global function definition for 'coxph'
em: no visible global function definition for 'optim'
plotpredictsmcure: no visible global function definition for 'matplot'
plotpredictsmcure: no visible global function definition for 'lines'
smcure: no visible binding for global variable 'na.omit'
smcure: no visible global function definition for 'model.frame'
smcure: no visible global function definition for 'model.extract'
smcure: no visible global function definition for 'model.matrix'
smcure: no visible global function definition for 'coxph'
smcure: no visible global function definition for 'survreg'
smcure: no visible binding for global variable 'var'
smcure: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  coxph lines matplot model.extract model.frame model.matrix na.omit
  optim pnorm survreg var
Consider adding
  importFrom("graphics", "lines", "matplot")
  importFrom("stats", "model.extract", "model.frame", "model.matrix",
             "na.omit", "optim", "pnorm", "var")
to your NAMESPACE file.
Packages required but not available:
  'GSVA', 'samr', 'e1071', 'preprocessCore', 'pheatmap', 'maftools',
  'survminer', 'pracma', 'quadprog', 'RColorBrewer', 'backports'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'stddiff', 'tableone', 'knitr', 'dplyr', 'purrr',
  'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Grad.sph: no visible global function definition for 'dist'
IMDS: no visible global function definition for 'cmdscale'
IMDS: no visible global function definition for 'as.dist'
IMDS: no visible global function definition for 'runif'
IMDS: no visible global function definition for 'optim'
idistSph: no visible global function definition for 'dist'
obj.sph: no visible global function definition for 'dist'
plot.imds: no visible binding for global variable 'lines'
plot.imds: no visible global function definition for 'text'
plot.imds: no visible global function definition for 'rect'
Undefined global functions or variables:
  as.dist cmdscale dist lines optim rect runif text
Consider adding
  importFrom("graphics", "lines", "rect", "text")
  importFrom("stats", "as.dist", "cmdscale", "dist", "optim", "runif")
to your NAMESPACE file.
Packages required but not available:
  'MESS', 'pbapply', 'randtoolbox', 'sp', 'Rcpp', 'RcppProgress'

Packages suggested but not available for checking:
  'crayon', 'lintr', 'maps', 'testthat', 'SpatialEpi', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape', 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'pracma', 'fs', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'abind'

Package suggested but not available for checking: 'deSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ineq', 'truncnorm', 'lme4', 'MuMIn', 'formula.tools', 'mvtnorm',
  'Hmisc', 'laeken', 'weights'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mlmRev', 'R.rsp', 'Kernelheaping'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Malformed Description field: should contain one or more complete sentences.
lines.SmithWilsonYieldCurve: no visible global function definition for
  'lines'
points.SmithWilsonYieldCurve: no visible global function definition for
  'points'
Undefined global functions or variables:
  lines points
Consider adding
  importFrom("graphics", "lines", "points")
to your NAMESPACE file.
Running 'testall.R'
Running the tests in 'tests/testall.R' failed.
Complete output:
  > library( "testthat" )
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'sf', 'Biostrings'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'htmlwidgets', 'yaml', 'jsonlite', 'magrittr'

Packages suggested but not available for checking:
  'SMITIDstruct', 'knitr', 'shiny', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'foreach', 'mvnfast', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'seqinr', 'DiscreteWeibull'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DiscreteWeibull', 'Rcpp', 'seqinr', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'XML', 'tibble', 'curl', 'rvest', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'PerformanceAnalytics'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SSN', 'RSQLite', 'spam'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'foreach', 'doParallel', 'dplyr', 'tidyr', 'magrittr',
  'ggplot2', 'Rdpack', 'rmarkdown', 'RcppArmadillo'

Packages suggested but not available for checking: 'roxygen2', 'pkgdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ParamHelpers', 'checkmate', 'BBmisc', 'ggplot2', 'RColorBrewer',
  'plot3D', 'plotly', 'mco', 'Rcpp', 'RJSONIO', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rPython'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantreg', 'SparseM', 'lmtest', 'rgl', 'colorspace'

Packages suggested but not available for checking: 'testthat', 'demography'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'TTR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'prodlim', 'lava', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'SpatialVx', 'fields'
Malformed Description field: should contain one or more complete sentences.
Fourier2d: no visible global function definition for 'fft'
kernel2dsmooth: no visible global function definition for 'fft'
Undefined global functions or variables:
  fft
Consider adding
  importFrom("stats", "fft")
to your NAMESPACE file.
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
Packages required but not available:
  'greybox', 'Rcpp', 'pracma', 'statmod', 'nloptr', 'zoo',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'Mcomp', 'numDeriv', 'testthat', 'knitr', 'rmarkdown', 'doMC',
  'doParallel', 'foreach'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ks'

Package suggested but not available for checking: 'KMsurv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'sf', 'units'

Packages suggested but not available for checking:
  'covr', 'knitr', 'lwgeom', 'rmarkdown', 'sp', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'logcondens'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rfast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'fGarch'
Packages required but not available: 'FNN', 'dbscan', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rpanel'

Packages suggested but not available for checking:
  'knitr', 'numDeriv', 'revdbayes', 'tkrplot', 'testthat', 'rmarkdown',
  'SuppDists'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'imager', 'ggplot2', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ellipse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'rgl', 'misc3d', 'akima', 'gam', 'tkrplot', 'rpanel'
Running examples in 'sm-Ex.R' failed
The error most likely occurred in:

> ### Name: sm.surface3d
> ### Title: Adding a regression surface to an rgl plot.
> ### Aliases: sm.surface3d
> ### Keywords: nonparametric regression smooth
> 
> ### ** Examples
> 
> with(trawl, {
+    Zone93    <- (Year == 1 & Zone == 1)
+    Position  <- cbind(Longitude - 143, Latitude)
+    model1 <- sm.regression(Position[Zone93,], Score1[Zone93],
+         h= c(0.1, 0.1), display = "rgl", xlab="Longitude - 143")
+    model2 <- sm.regression(Position[Zone93,], Score1[Zone93],
+         h= c(0.2, 0.2), display = "none")
+    sm.surface3d(model2$eval.points, model2$est, model1$scaling, col = "red")
+ })
Error in sm.surface3d(model2$eval.points, model2$est, model1$scaling,  : 
  a scaling must be specified.
Calls: with -> with.default -> eval -> eval -> sm.surface3d
Execution halted
Malformed Description field: should contain one or more complete sentences.
dNMR: no visible global function definition for 'pnorm'
dNMR: no visible global function definition for 'dnorm'
pNMR: no visible global function definition for 'pnorm'
pNMR: no visible global function definition for 'dnorm'
rMR: no visible global function definition for 'rnorm'
rMR: no visible global function definition for 'rchisq'
Undefined global functions or variables:
  dnorm pnorm rchisq rnorm
Consider adding
  importFrom("stats", "dnorm", "pnorm", "rchisq", "rnorm")
to your NAMESPACE file.
Packages required but not available: 'doParallel', 'foreach', 'iterators'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'devtools'
Packages required but not available:
  'catdata', 'glmnet', 'RColorBrewer', 'Rcpp', 'speedglm',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'bookdown', 'knitr', 'rmarkdown', 'roxygen2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'SKAT', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
SMVar.paired : <anonymous>: no visible global function definition for
  'var'
SMVar.paired: no visible global function definition for 'var'
SMVar.paired: no visible global function definition for 'pt'
SMVar.paired: no visible global function definition for 'p.adjust'
SMVar.paired: no visible global function definition for 'write.table'
SMVar.unpaired : <anonymous>: no visible global function definition for
  'var'
SMVar.unpaired: no visible global function definition for 'var'
SMVar.unpaired: no visible global function definition for 'pt'
SMVar.unpaired: no visible global function definition for 'p.adjust'
SMVar.unpaired: no visible global function definition for 'write.table'
Undefined global functions or variables:
  p.adjust pt var write.table
Consider adding
  importFrom("stats", "p.adjust", "pt", "var")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Packages required but not available:
  'ggraph', 'graphlayouts', 'igraph', 'formatR', 'miniUI',
  'rstudioapi', 'ggplot2', 'shiny', 'colourpicker', 'DT'

Package suggested but not available for checking: 'ggforce'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'covr', 'tibble', 'purrrlyr', 'knitr', 'rmarkdown',
  'magrittr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'statnet.common', 'network'

Packages suggested but not available for checking:
  'rgl', 'numDeriv', 'SparseM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Package suggested but not available for checking: 'sn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'ggplot2', 'prodlim', 'quadprog', 'Rdpack', 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridExtra', 'zoo', 'plyr', 'reshape2'

Packages suggested but not available for checking: 'mvtnorm', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/pairwiseSNHT.Rnw'
   'inst/doc/snht.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'mvtnorm', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'xml2', 'httr', 'rvest', 'magrittr', 'wdman', 'RSelenium',
  'memoise'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat', 'shinydashboard',
  'leaflet', 'plotly', 'DT'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'Rcpp', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'snow'

Package suggested but not available for checking: 'Rmpi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'rlecuyer', 'snow'

Package suggested but not available for checking: 'Rmpi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'Rmpi', 'rlecuyer', 'nws'
KS.test: no visible global function definition for 'quantile'
KS.test : Fgaus: no visible global function definition for 'pnorm'
KS.test: no visible global function definition for 'setNames'
cs.test: no visible global function definition for 'pbinom'
cs.test: no visible global function definition for 'pnorm'
cs.test: no visible global function definition for 'setNames'
kde: no visible global function definition for 'quantile'
kde : Fgaus: no visible global function definition for 'pnorm'
kde: no visible global function definition for 'par'
kre: no visible global function definition for 'quantile'
kre: no visible global function definition for 'lines'
ns.test: no visible global function definition for 'complete.cases'
ns.test: no visible global function definition for 'qnorm'
ns.test: no visible global function definition for 'pnorm'
ns.test: no visible global function definition for 'pchisq'
ns.test: no visible global function definition for 'setNames'
ns.test: no visible global function definition for 'qt'
quant.test: no visible global function definition for 'complete.cases'
quant.test: no visible global function definition for 'pbinom'
quant.test: no visible global function definition for 'pnorm'
quant.test: no visible global function definition for 'setNames'
quant.test: no visible global function definition for 'quantile'
quant.test: no visible global function definition for 'phyper'
runs.test: no visible global function definition for 'median'
runs.test: no visible global function definition for 'setNames'
runs.test: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  complete.cases lines median par pbinom pchisq phyper pnorm qnorm qt
  quantile setNames
Consider adding
  importFrom("graphics", "lines", "par")
  importFrom("stats", "complete.cases", "median", "pbinom", "pchisq",
             "phyper", "pnorm", "qnorm", "qt", "quantile", "setNames")
to your NAMESPACE file.
Packages required but not available:
  'haplo.stats', 'mvtnorm', 'tidyr', 'plyr', 'ggplot2', 'BiocStyle',
  'poisbinom'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'biomaRt'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'snpStats', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'RcppArmadillo', 'RcppProgress'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'doParallel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RSQLite', 'biomaRt', 'Rcpp', 'R.utils', 'DBI'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/snplist.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'clickR', 'future', 'future.apply', 'ggplot2', 'ggrepel', 'ks',
  'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'combinat'

Packages suggested but not available for checking: 'mvtnorm', 'combinat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'genetics'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'matrixcalc', 'stringr', 'rgl', 'impute'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'reshape2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gaston', 'data.table', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages in Depends field not imported from:
  'colorspace' 'snpStats'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Package unavailable to check Rd xrefs: 'snpStats'
Packages required but not available: 'mnormt', 'numDeriv', 'quantreg'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'poweRlaw', 'Rmpfr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'magic', 'emdbook', 'plyr', 'statmod', 'knitr', 'progress'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'coda', 'numDeriv'

Packages suggested but not available for checking:
  'RegressionFactory', 'MfUSampler'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'raster', 'rlang', 'scales', 'sp', 'statmod', 'tidyr',
  'dplyr', 'stringr', 'DescTools', 'devtools', 'usethis'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'np', 'minqa', 'pbmcapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridExtra', 'ellipse', 'shiny', 'reshape2', 'ggrepel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'curl', 'httr', 'jsonlite', 'oai', 'wpp2015',
  'countrycode', 'stringr', 'XML', 'lubridate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2', 'reshape2', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'censusapi', 'dplyr', 'magrittr', 'mice', 'psych', 'purrr', 'rlang',
  'stringr', 'tidycensus', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'sf', 'testthat', 'tibble', 'tigris'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'fs', 'magrittr', 'rlang', 'tibble'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'crul', 'jsonlite', 'R6', 'mime'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'sampling'

Packages suggested but not available for checking:
  'ggplot2', 'VGAM', 'shinyjs', 'ggExtra', 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'arrayhelpers', 'svUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Malformed Description field: should contain one or more complete sentences.
Ssimpute.als: no visible global function definition for 'rnorm'
Ssvd.als: no visible global function definition for 'rnorm'
cs.default: no visible binding for global variable 'weighted.mean'
simpute.als: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  rnorm weighted.mean
Consider adding
  importFrom("stats", "rnorm", "weighted.mean")
to your NAMESPACE file.
Packages required but not available:
  'arm', 'caret', 'Cubist', 'deSolve', 'e1071', 'FuzzyAHP', 'Hmisc',
  'kernlab', 'maptools', 'quantregForest', 'qrnn', 'randomForest',
  'ranger', 'raster', 'rgdal', 'soiltexture', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'openxlsx', 'devtools', 'ggplot2', 'shiny'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'aqp', 'plyr', 'xml2', 'sp', 'reshape2', 'raster', 'curl',
  'data.table', 'DBI'

Packages suggested but not available for checking:
  'rgdal', 'jsonlite', 'httr', 'sf', 'rgeos', 'rvest', 'odbc',
  'RSQLite', 'testthat', 'gridExtra', 'ggplot2', 'viridisLite',
  'mapview', 'rasterVis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'lubridate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'shinydashboard', 'fields'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rpanel', 'tkrplot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'ncvreg', 'brglm2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'deSolve', 'RUnit'

Package suggested but not available for checking: 'FME'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

Package suggested but not available for checking: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'raster'
Package suggested but not available for checking: 'caret'
Found the following significant warnings:
  Warning: namespace 'caret' is not available and has been replaced
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/Sojourn.Data/Sojourn.Data.Rcheck/00install.out' for details.
Packages required but not available:
  'dplyr', 'magrittr', 'lubridate', 'PAutilities', 'rlang',
  'svDialogs', 'zoo', 'Rcpp'

Packages suggested but not available for checking:
  'data.table', 'Sojourn.Data', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'zoo', 'latticeExtra', 'RColorBrewer'

Packages suggested but not available for checking:
  'sp', 'raster', 'rasterVis', 'tdr', 'meteoForecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lubridate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ranger', 'data.table', 'igraph', 'future.apply', 'R6', 'lgr'

Package suggested but not available for checking: 'mvoutlier'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'plyr', 'crul', 'xml2', 'jsonlite', 'tibble', 'R6'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'dplyr', 'mime'

Packages suggested but not available for checking:
  'testthat', 'shiny', 'shinyjs', 'openssl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Package required but not available: 'reportr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'markdown', 'scatterplot3d', 'shiny', 'ggplot2',
  'ggwordcloud', 'metR', 'interp'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr', 'hexbin', 'shinycssloaders',
  'shinyBS', 'shinyjs', 'shinyjqui'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
bm: no visible global function definition for 'rnorm'
bm: no visible global function definition for 'ts'
fbm: no visible global function definition for 'fft'
fbm: no visible global function definition for 'rnorm'
fbm: no visible global function definition for 'ts'
gbm: no visible global function definition for 'rnorm'
gbm: no visible global function definition for 'ts'
Undefined global functions or variables:
  fft rnorm ts
Consider adding
  importFrom("stats", "fft", "rnorm", "ts")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
getAlpha: no visible global function definition for 'pbinom'
kfweOrd: no visible global function definition for 'qnbinom'
Undefined global functions or variables:
  pbinom qnbinom
Consider adding
  importFrom("stats", "pbinom", "qnbinom")
to your NAMESPACE file.
Packages required but not available:
  'rlist', 'kohonen', 'shiny', 'dplyr', 'plyr', 'openair',
  'colourpicker', 'shinycssloaders', 'shinycustomloader'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'Rcpp', 'RcppArmadillo', 'RcppProgress'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'plyr', 'orthopolynom'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'hexbin', 'kohonen', 'som'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'hexbin'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'geosphere', 'sp'

Packages suggested but not available for checking:
  'reshape2', 'Hmisc', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tuneR', 'seewave', 'ggplot2', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'covr', 'WaveletComp', 'devtools', 'googleCloudStorageR',
  'googleLanguageR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tuneR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'rgl', 'testthat'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'circular', 'ADGofTest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'magrittr'
Packages required but not available: 'MCMCpack', 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'testthat', 'brew'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'learnr', 'shiny', 'assertthat',
  'jsonlite', 'ellipsis'

Packages suggested but not available for checking:
  'base64', 'knitr', 'testthat', 'withr', 'rmarkdown', 'magrittr',
  'webshot', 'spelling', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Hmisc', 'pbapply', 'quantreg', 'rlist', 'SparseM', 'dummies'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'RColorBrewer', 'dplyr', 'reshape2'

Packages suggested but not available for checking:
  'gdata', 'knitr', 'rmarkdown', 'RCurl', 'rjson', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'brew'

Packages suggested but not available for checking:
  'RODBC', 'WriteXLS', 'fda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'rjson'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'testthat', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shiny', 'shinyjqui'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'pracma', 'oce', 'ineq', 'vegan', 'tuneR', 'seewave'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'SciencesPo', 'stringr'

Package which this enhances but not available for checking: 'RecordLinkage'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'shinyBS', 'tuneR', 'seewave', 'zoo', 'reshape2', 'mvtnorm', 'dtw',
  'phonTools', 'signal', 'shiny', 'shinyjs'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'geomorph', 'plot3D', 'reshape2', 'seewave', 'tuneR'

Packages suggested but not available for checking:
  'vegan', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tensor'

Package suggested but not available for checking: 'flip'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tensorA', 'assertthat', 'Rcpp', 'gtools', 'R6', 'gplots',
  'SPIn', 'reshape2'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gRbase', 'progress', 'reshape2', 'graph', 'igraph', 'gtools',
  'plyr', 'scales'

Packages suggested but not available for checking:
  'networkD3', 'ggplot2', 'Rgraphviz', 'knitr', 'rmarkdown',
  'r2cytoscape', 'BiocStyle', 'Biobase', 'graphite', 'hgu95av2.db',
  'ALL', 'mvtnorm', 'org.Hs.eg.db'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'broom', 'dplyr', 'ggplot2', 'gridExtra', 'lmtest', 'lubridate',
  'magrittr', 'mclust', 'purrr', 'randomForest', 'sandwich', 'stringr',
  'strucchange', 'tidyr', 'xts', 'zoo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'quantmod', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'NAM', 'lme4', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'tibble', 'pbmcapply', 'purrr', 'rlist', 'XML', 'xml2',
  'DT', 'urltools'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'vegan'
Packages required but not available:
  'abind', 'dplyr', 'ggplot2', 'Rcpp', 'tidyr', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mclust', 'permute', 'RcppTN', 'Rfast', 'sna', 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'spacesXYZ', 'rgl', 'microbenchmark', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'rgl'
'LazyData' is specified without a 'data' directory
Running 'test-ACES.R'
Running the tests in 'tests/test-ACES.R' failed.
Last 13 lines of output:
  +     }
  + 
  + if( 0 < length(listbad) )
  +     {
  +     print( listbad )
  +     
  +     stop( "testACES() failed !", call.=FALSE )
  +     }
  + 
  + printf(  "\nPassed all ACES tests !" )
  + }
  spacesRGB::composition.TransferFunction(). WARN .  The metadata has 1 duplicates (e.g. 'gamma'); latter items are removed. 
  Error in loadNamespace(x) : there is no package called 'spacesXYZ'
  Calls: testACES ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/isotherms.rnw'
(Is a VignetteBuilder field missing?)
Package unavailable to check Rd xrefs: 'colorSpec'
Files named as vignettes but with no recognized vignette engine:
   'vignettes/isotherms.rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available: 'sp', 'zoo', 'xts', 'intervals'

Packages suggested but not available for checking:
  'adehabitatLT', 'cshapes', 'diveMove', 'gstat', 'maps', 'mapdata',
  'maptools', 'plm', 'raster', 'RColorBrewer', 'rgdal', 'rgeos',
  'RPostgreSQL', 'knitr', 'googleVis', 'ISOcodes', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'raster', 'rayshader', 'magrittr', 'png', 'jsonlite', 'rgdal'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'future', 'pkgload'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'reticulate'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'quanteda', 'R.rsp', 'rmarkdown', 'spelling',
  'testthat', 'tidytext', 'tibble'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mapproj', 'RCEIM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rstudioapi', 'magrittr', 'stringr', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rebus'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'devtools', 'magrittr', 'miniUI', 'reproducible', 'rstudioapi',
  'shiny', 'SpaDES.core', 'stringi'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quickPlot', 'reproducible', 'crayon', 'data.table', 'fastdigest',
  'igraph', 'qs', 'raster', 'Require', 'whisker'

Packages suggested but not available for checking:
  'covr', 'DiagrammeR', 'dplyr', 'future', 'future.callr',
  'googledrive', 'httr', 'knitr', 'logging', 'magrittr', 'png',
  'RandomFields', 'RColorBrewer', 'rgdal', 'rstudioapi', 'sp',
  'SpaDES.tools', 'rmarkdown', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quickPlot', 'reproducible', 'SpaDES.addins', 'SpaDES.core',
  'SpaDES.tools'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat', 'spelling'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'backports', 'checkmate', 'CircStats', 'data.table', 'fastmatch',
  'fpCompare', 'magrittr', 'quickPlot', 'raster', 'Rcpp',
  'reproducible', 'rgeos', 'sp'

Packages suggested but not available for checking:
  'animation', 'DEoptim', 'dplyr', 'fasterize', 'ff', 'ffbase',
  'gdalUtils', 'knitr', 'RandomFields', 'RColorBrewer', 'rmarkdown',
  'sf', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'earlywarnings', 'knitr', 'moments', 'np', 'pomp',
  'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Namespace in Imports field not imported from: 'utils'
  All declared Imports should be used.
Packages unavailable to check Rd xrefs: 'pomp', 'moments', 'earlywarnings'
'LazyData' is specified without a 'data' directory
Running examples in 'spaero-Ex.R' failed
The error most likely occurred in:

> ### Name: create_simulator
> ### Title: Create surveillance data simulator.
> ### Aliases: create_simulator
> 
> ### ** Examples
> 
> 
> foo <- create_simulator()
Error: The pomp package is needed for this function to work. Please install it.
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'spatstat.geom', 'spatstat.core', 'spatstat.linnet', 'spatstat',
  'RandomFields', 'abind', 'sparr', 'mvtnorm'

Package suggested but not available for checking: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'spam'
Packages required but not available:
  'proxy', 'Rcpp', 'nloptr', 'minqa', 'pbapply', 'crayon', 'gmp',
  'ROI', 'RcppEigen'

Packages suggested but not available for checking:
  'maps', 'testthat', 'lme4', 'rsae', 'rcdd', 'pedigreemm', 'foreach',
  'multilevel', 'Infusion', 'IsoriX', 'blackbox', 'RSpectra',
  'ROI.plugin.glpk'

Packages which this enhances but not available for checking:
  'multcomp', 'RLRsim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dotCall64'

Packages suggested but not available for checking:
  'spam64', 'fields', 'testthat', 'R.rsp', 'truncdist', 'knitr',
  'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'R.rsp', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
hausman: no visible global function definition for 'pchisq'
span.formula: no visible global function definition for 'model.frame'
span.formula: no visible global function definition for 'model.matrix'
span.formula: no visible global function definition for
  'model.response'
spbe: no visible global function definition for 'cor'
spbe: no visible global function definition for 'pt'
spfe: no visible global function definition for 'cor'
spfe: no visible global function definition for 'pt'
sprandom: no visible global function definition for 'cor'
sprandom: no visible global function definition for 'pt'
summary.span: no visible global function definition for 'printCoefmat'
Undefined global functions or variables:
  cor model.frame model.matrix model.response pchisq printCoefmat pt
Consider adding
  importFrom("stats", "cor", "model.frame", "model.matrix",
             "model.response", "pchisq", "printCoefmat", "pt")
to your NAMESPACE file.
Packages required but not available: 'magrittr', 'xml2'

Packages suggested but not available for checking: 'testthat', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geoR', 'shiny', 'ScottKnott', 'car', 'gtools', 'multcomp',
  'multcompView', 'mvtnorm', 'DT', 'shinyBS', 'xtable', 'shinythemes',
  'rmarkdown', 'knitr', 'spdep', 'ape', 'spatialreg', 'shinycssloaders'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'plyr', 'foreach', 'pracma', 'stringr', 'complexplus',
  'signal', 'matrixcalc', 'minpack.lm', 'nnls', 'smoother', 'readr',
  'magrittr', 'ptw', 'mmand', 'RNifti', 'RNiftyReg', 'fields',
  'numDeriv', 'nloptr', 'irlba', 'tibble', 'jsonlite'

Packages suggested but not available for checking:
  'viridisLite', 'shiny', 'miniUI', 'knitr', 'rmarkdown', 'testthat',
  'doParallel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sparklyr', 'dplyr', 'DBI'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sparklyr'

Package suggested but not available for checking: 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'sparklyr', 'sparklyr.nested'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'htmlwidgets'

Packages suggested but not available for checking:
  'formattable', 'knitr', 'rmarkdown', 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dbplyr', 'dplyr', 'rlang', 'sparklyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sparklyr', 'jsonlite', 'listviewer', 'dplyr', 'rlang', 'purrr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Invalid NAMESPACE file, parsing gives:
Error in utils::packageVersion("dbplyr"): there is no package called 'dbplyr'

See section 'Package namespaces' in the 'Writing R Extensions' manual.
Package required but not available: 'sparklyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sparklyr'

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'sparklyr', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sparklyr', 'forge'

Packages suggested but not available for checking:
  'dplyr', 'purrr', 'rlang', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
f.I2.cont: no visible global function definition for 'combn'
f.I2.dich: no visible global function definition for 'combn'
f.pstar.cont: no visible global function definition for 'combn'
f.pstar.dich: no visible global function definition for 'combn'
Undefined global functions or variables:
  combn
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
Packages required but not available:
  'spatstat.geom', 'spatstat.core', 'spatstat.linnet', 'spatstat',
  'doFuture', 'doRNG', 'fields', 'foreach', 'future', 'iterators',
  'lifecycle', 'raster', 'sp', 'sparr'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat', 'spatstat.utils', 'spatstat.geom', 'spatstat.core',
  'doParallel', 'foreach', 'misc3d'

Package suggested but not available for checking: 'fftwtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glasso', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggrepel', 'gtable', 'rlang', 'sparsepca', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sparsebnUtils', 'ccdrAlgorithm', 'discretecdAlgorithm'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mvtnorm', 'igraph', 'graph', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'bnlearn', 'graph', 'igraph', 'network', 'RCy3', 'testthat'
Packages unavailable to check Rd xrefs: 'RCy3', 'graph', 'igraph', 'network', 'bnlearn', 'sparsebn'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'directlabels', 'proto', 'ggplot2', 'Rcpp', 'VGAM', 'truncnorm',
  'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'refund', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'statmod', 'mvtnorm'
Malformed Description field: should contain one or more complete sentences.
Package unavailable to check Rd xrefs: 'mvtnorm'
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'numDeriv', 'scales', 'knitr', 'xtable', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/sparseHessianFD.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'bookdown', 'knitr', 'prettydoc', 'rmarkdown', 'R.rsp', 'xts'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown', 'R.rsp'
Running examples in 'sparseIndexTracking-Ex.R' failed
The error most likely occurred in:

> ### Name: spIndexTrack
> ### Title: Sparse Index Tracking
> ### Aliases: spIndexTrack
> 
> ### ** Examples
> 
> library(sparseIndexTracking)
> library(xts)
Error in library(xts) : there is no package called 'xts'
Execution halted
Packages required but not available: 'Rcpp', 'spam'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'elasticnet', 'mda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'gtools', 'vegan', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RSpectra'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'robustHD', 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glasso'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doRNG', 'foreach', 'doParallel'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'future.apply', 'data.table', 'future', 'tidyverse',
  'lubridate', 'viridis', 'geosphere'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lpSolve', 'Rcapture'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'mvtnorm', 'plyr', 'knitr', 'testthat', 'dplyr', 'scales',
  'reshape2', 'trustOptim', 'xtable', 'ggplot2', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/sparseMVN.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/sparseMVN.Rnw'
(Is a VignetteBuilder field missing?)
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'shape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rsvd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'Rcpp'
Packages required but not available:
  'ggplot2', 'Rcpp', 'msm', 'VGAM', 'MCMCpack', 'coda', 'glmnet',
  'gridExtra', 'GIGrvg', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'glasso', 'longitudinal', 'huge', 'mvtnorm', 'network', 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ncvreg', 'doParallel', 'glmnet', 'ggplot2', 'reshape2', 'mvtnorm',
  'picasso', 'corpcor'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'selectiveInference', 'glmnet', 'RcppArmadillo',
  'RcppEnsmallen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FactoMineR', 'dplyr', 'tidyr', 'ggplot2', 'plotly', 'stringr',
  'colorspace', 'crayon', 'shiny', 'shinydashboard', 'shinyjs',
  'shinyjqui', 'fpc', 'ggdendro', 'rstudioapi', 'htmlwidgets',
  'shinythemes', 'markdown', 'explor', 'shinyWidgets', 'scatterD3',
  'sp', 'ks', 'rgdal', 'maptools', 'leaflet', 'ape', 'mapview'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BB', 'msm', 'numDeriv', 'plyr', 'TMB', 'RcppEigen'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'mvtnorm', 'multcomp', 'geepack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat', 'spatstat.geom', 'spatstat.core', 'spatstat.linnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'truncnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pracma', 'igraph', 'matrixStats', 'Rtsne', 'knitr', 'rmarkdown',
  'irlba'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'hexbin', 'ggplot2', 'lubridate', 'RColorBrewer'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'JADE', 'sp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'sf', 'RandomFields', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgeos', 'sp', 'ggplot2', 'maptools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'sf', 'raster', 'spatstat.geom', 'spatstat.core', 'spdep',
  'rgeos'

Packages suggested but not available for checking:
  'exactextractr', 'readr', 'RCurl', 'RANN', 'rms', 'yaImpute',
  'SpatialPack', 'EnvStats', 'maptools', 'GeNetIt', 'gstat',
  'RStoolbox', 'terra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'dygraphs', 'ggplot2', 'htmlwidgets', 'knitr', 'leaflet',
  'mapproj', 'maptools', 'RColorBrewer', 'rgdal', 'rgeos', 'rmarkdown',
  'shiny', 'shinyjs', 'SpatialEpi', 'spdep', 'xts'

Packages suggested but not available for checking: 'INLA', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'Rcpp', 'maptools', 'spdep', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'maps', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fields', 'reshape2', 'taRifx', 'blocksdesign'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'sp', 'SDraw', 'fields'

Packages suggested but not available for checking:
  'INLA', 'geoR', 'testthat', 'tmap', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'rgeos', 'shape', 'sp', 'splancs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'sf', 'dplyr', 'glue', 'magrittr', 'rlang', 'vctrs', 'raster'

Packages suggested but not available for checking:
  'tmap', 'sp', 'knitr', 'rgdal', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'randomForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SocialNetworks', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'ICSNP', 'MNM'
Packages unavailable to check Rd xrefs: 'ICSNP', 'MNM'
Package required but not available: 'fastmatrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'sp', 'isoband', 'raster'

Packages suggested but not available for checking:
  'lwgeom', 'doParallel', 'foreach', 'cartography', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'spdep', 'mvtnorm', 'tmvtnorm'

Packages suggested but not available for checking: 'RUnit', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'spdep', 'quantreg', 'GWmodel', 'plm'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spData', 'spdep', 'expm', 'coda', 'LearnBayes', 'gmodels'

Packages suggested but not available for checking:
  'RSpectra', 'sf', 'tmap', 'spam', 'knitr', 'lmtest', 'sandwich'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'automap', 'classInt', 'dplyr', 'fs', 'ggplot2', 'gstat',
  'lubridate', 'Rcpp', 'RcppProgress', 'sf', 'sp', 'tmap', 'viridis',
  'vroom'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'rlang', 'rsample', 'tibble', 'tidyselect', 'vctrs'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'modeldata', 'rmarkdown', 'tidyr', 'testthat',
  'yardstick', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'spBayes', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat', 'fields', 'smoothie', 'smatr', 'turboEM',
  'spatstat.geom', 'spatstat.core', 'spatstat.linnet', 'distillery',
  'maps', 'CircStats', 'fastcluster', 'waveslim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'future', 'Rcpp', 'ggplot2', 'plyr', 'tidyr', 'future.apply', 'gsl',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'moments', 'poweRlaw', 'testthat', 'covr', 'acss'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'BH', 'colourvalues', 'geojsonsf', 'geometries', 'jsonify',
  'rapidjsonr', 'sfheaders'

Packages suggested but not available for checking:
  'colourvalues', 'covr', 'geojsonsf', 'jsonify', 'sfheaders', 'knitr',
  'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pomp', 'doParallel', 'foreach', 'dplyr', 'tidyr', 'stringr',
  'ggplot2', 'abind', 'rlang', 'magrittr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'sp', 'rgeos', 'adehabitatHR', 'igraph'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'asnipe', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fields', 'plot3Drgl', 'spam', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat.data', 'spatstat.geom', 'spatstat.utils',
  'spatstat.sparse', 'abind', 'tensor', 'goftest'

Packages suggested but not available for checking:
  'sm', 'maptools', 'gsl', 'locfit', 'RandomFields',
  'RandomFieldsUtils', 'fftwtools', 'spatstat.linnet', 'spatstat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'spatstat.utils'

Packages suggested but not available for checking:
  'spatstat.geom', 'spatstat.core', 'spatstat.linnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat.data', 'spatstat.utils', 'deldir', 'polyclip'

Packages suggested but not available for checking:
  'spatstat.core', 'spatstat.linnet', 'maptools', 'fftwtools',
  'spatstat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat.geom', 'spatstat.core', 'spatstat.linnet', 'spatstat.data',
  'rpanel', 'spatstat.utils'

Depends: includes the non-default packages:
  'spatstat.geom', 'spatstat.core', 'spatstat.linnet', 'spatstat.data',
  'rpanel', 'tcltk'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat.data', 'spatstat.sparse', 'spatstat.geom', 'spatstat.core',
  'spatstat.linnet', 'spatstat.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat.data', 'spatstat.geom', 'spatstat.core', 'spatstat.utils'

Packages suggested but not available for checking:
  'goftest', 'locfit', 'spatstat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat.data', 'spatstat.sparse', 'spatstat.geom', 'spatstat.core',
  'tensor', 'spatstat.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat.data', 'spatstat.geom', 'spatstat.core', 'spatstat.linnet',
  'spatstat.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'abind', 'tensor', 'spatstat.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'spatstat.core'
Package unavailable to check Rd xrefs: 'spatstat.core'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'sp', 'spatstat.geom', 'spatstat.core', 'spatstat', 'raster',
  'iterators', 'RandomFields', 'fields', 'stringr', 'rgeos',
  'RColorBrewer', 'lubridate'

Packages suggested but not available for checking:
  'rgdal', 'rgl', 'OpenStreetMap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'sp', 'tibble', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'maptools', 'raster', 'sf', 'rmarkdown',
  'knitr', 'covr', 'trip', 'viridis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'sp', 'magic', 'Formula'

Packages suggested but not available for checking: 'MBA', 'geoR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'coda', 'fields', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'LS2Wstat', 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'lme4', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
GenerateCliquesCovariance: no visible global function definition for
  'rnorm'
Undefined global functions or variables:
  rnorm
Consider adding
  importFrom("stats", "rnorm")
to your NAMESPACE file.
Packages required but not available:
  'msm', 'mvtnorm', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'coda', 'classInt', 'knitr', 'rmarkdown', 'womblR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'raster'

Packages suggested but not available for checking:
  'maptools', 'rgdal', 'sf', 'spDataLarge', 'spdep', 'spatialreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rcarbon', 'data.table', 'dplyr', 'gdistance', 'ggplot2', 'raster',
  'smatr', 'viridisLite', 'magrittr', 'rlang', 'sp', 'gstat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'spData', 'sf', 'deldir', 'LearnBayes', 'coda', 'expm',
  'gmodels'

Packages suggested but not available for checking:
  'spatialreg', 'dbscan', 'rgeos', 'RColorBrewer', 'xtable',
  'maptools', 'igraph', 'RSpectra', 'knitr', 'rgdal', 'classInt',
  'tmap', 'spam', 'ggplot2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Invalid NAMESPACE file, parsing gives:
Error in utils::packageVersion("dplyr"): there is no package called 'dplyr'

See section 'Package namespaces' in the 'Writing R Extensions' manual.
Packages required but not available:
  'corpcor', 'forecast', 'plyr', 'Rcpp', 'separationplot', 'xtable',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'devtools', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'sp', 'deSolve', 'animation'

Packages suggested but not available for checking:
  'knitr', 'roxygen2', 'igraph', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'lifecycle', 'readr', 'stringr', 'tibble'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'MassSpecWavelet', 'mQTL', 'doSNOW', 'data.table', 'foreach',
  'Rfast', 'ggplot2', 'gridExtra', 'reshape2', 'rvest', 'xml2',
  'missForest', 'impute'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gridBase'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'emplik'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
bartlett: no visible global function definition for 'pchisq'
local.rbfdot: no visible binding for global variable 'sd'
local.rbfdot: no visible global function definition for 'dist'
local.rbfdot : <anonymous>: no visible global function definition for
  'median'
speccalt: no visible global function definition for 'kmeans'
Undefined global functions or variables:
  dist kmeans median pchisq sd
Consider adding
  importFrom("stats", "dist", "kmeans", "median", "pchisq", "sd")
to your NAMESPACE file.
Package required but not available: 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gsubfn', 'splancs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ChaoBunge: no visible global function definition for 'qnorm'
ChaoLee1992: no visible global function definition for 'qnorm'
Pmix: no visible global function definition for 'dpois'
PmixSCon: no visible global function definition for 'dbeta'
bootPCG: no visible global function definition for 'flush.console'
bootPCG: no visible global function definition for 'quantile'
bootPnpmle: no visible global function definition for 'flush.console'
bootPnpmle: no visible global function definition for 'quantile'
bootUnpmle: no visible global function definition for 'flush.console'
bootUnpmle: no visible global function definition for 'quantile'
chao1984: no visible global function definition for 'qnorm'
jackknife: no visible global function definition for 'dbinom'
jackknife: no visible global function definition for 'qnorm'
pcg: no visible global function definition for 'flush.console'
unpmle: no visible global function definition for 'flush.console'
untrunPmix: no visible global function definition for 'dpois'
Undefined global functions or variables:
  dbeta dbinom dpois flush.console qnorm quantile
Consider adding
  importFrom("stats", "dbeta", "dbinom", "dpois", "qnorm", "quantile")
  importFrom("utils", "flush.console")
to your NAMESPACE file.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'imager', 'tidyverse', 'rgl', 'fftw', 'mrbsizeR', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xcms'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caret', 'e1071', 'ggplot2', 'impute', 'ellipse', 'GGally', 'pcaPP',
  'compare', 'baseline', 'pls', 'readJDX', 'speaq', 'genefilter',
  'RColorBrewer', 'Metrics', 'imputeTS', 'specmine.datasets', 'mrbin',
  'plotly', 'narray'

Packages suggested but not available for checking:
  'ggdendro', 'reticulate', 'qdap', 'scatterplot3d', 'MAIT', 'xcms',
  'KEGGgraph', 'KEGGREST', 'rcytoscapejs', 'rgl', 'curl', 'RCurl',
  'pins', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'encode', 'csv', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'cowplot', 'dplyr', 'ggplot2', 'ggraph', 'glue', 'igraph',
  'lme4', 'magrittr', 'purrr', 'rlang', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'tidyverse', 'performance', 'progress',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'plyr', 'reshape2', 'stringr', 'baseline', 'signal',
  'epiR'

Packages suggested but not available for checking:
  'caret', 'pls', 'RColorBrewer', 'knitr', 'rmarkdown', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'baseline', 'BiocGenerics', 'data.table', 'ggplot2', 'jsonlite',
  'magrittr', 'nnls', 'NMF', 'plotly', 'plyr', 'RColorBrewer',
  'signal', 'viridis', 'hNMF'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'progress', 'rlist', 'RcppArmadillo', 'RcppEigen'

Packages suggested but not available for checking:
  'bookdown', 'knitr', 'prettydoc', 'rmarkdown', 'R.rsp', 'testthat',
  'patrick', 'corrplot', 'igraph', 'kernlab', 'pals', 'clusterSim',
  'viridis', 'quadprog', 'matrixcalc'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'scatterplot3d', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rasterImage', 'RhpcBLASctl', 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httpuv', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'prospectr', 'RColorBrewer', 'shiny', 'shinyjs'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ClusterR', 'Rfast', 'diptest'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'beanplot', 'raster', 'plotrix', 'TeachingDemos'
Packages unavailable to check Rd xrefs: 'beanplot', 'raster', 'plotrix'
Note: found 5 marked Latin-1 strings
Package required but not available: 'pooh'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'magrittr', 'purrr', 'tabulizer', 'stringr',
  'tibble', 'tm', 'tidyr', 'pdftools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'biglm'
Package required but not available: 'leaps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BB', 'SQUAREM', 'ggplot2', 'sm', 'plyr', 'nleqslv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lmomco', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'dplyr', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'commonmark', 'xml2', 'hunspell', 'knitr'

Package suggested but not available for checking: 'pdftools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'spdep', 'MBA'

Package suggested but not available for checking: 'gstat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
spe: warning in matrix(retlist[[10]], nr = nobs, nc = edim): partial
  argument match of 'nr' to 'nrow'
spe: warning in matrix(retlist[[10]], nr = nobs, nc = edim): partial
  argument match of 'nc' to 'ncol'
spe: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Packages required but not available: 'sp', 'rgdal', 'foreach'

Package suggested but not available for checking: 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'future', 'future.apply', 'ROCR', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'ranger', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quadmesh', 'raster', 'reproj', 'sp', 'crsmeta'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mathjaxr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'moments', 'tmvtnorm', 'mvtnorm', 'spdep', 'ezsim', 'optimx',
  'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mlr', 'parallelMap', 'tictoc', 'ggplot2', 'mlbench'

Packages suggested but not available for checking:
  'caret', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'truncnorm', 'Rsolnp', 'spdep', 'nleqslv', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'XML'

Package suggested but not available for checking: 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package which this enhances but not available for checking: 'seqinr'
Package unavailable to check Rd xrefs: 'seqinr'
Packages required but not available: 'sp', 'spData'

Packages suggested but not available for checking:
  'spdep', 'maptools', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'geosphere', 'rgl', 'sphereplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cubature', 'SimplicialCubature', 'mvmesh', 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'spdep', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'robotstxt', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'pegas'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'rgbif', 'rworldmap', 'rworldxtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'GA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'akima', 'coda', 'ggplot2', 'gridExtra', 'MCMCpack', 'mvtnorm',
  'R2WinBUGS', 'reshape', 'scales'

Packages suggested but not available for checking:
  'mboost', 'mlbench', 'gtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lars', 'randomForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'emdbook'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'vars', 'zoo', 'fastSOM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'glmnet', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gee', 'geepack', 'splancs', 'waveslim', 'rje', 'stringr', 'ggplot2',
  'RColorBrewer', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gridExtra', 'testthat', 'PresenceAbsence',
  'sp', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tourr', 'ggplot2', 'gganimate', 'plotly', 'shiny', 'Rdimtools'

Packages suggested but not available for checking:
  'dplyr', 'GGally', 'rmarkdown', 'htmlwidgets', 'knitr', 'testthat',
  'covr', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'httr', 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'pkgdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gsheet', 'dplyr', 'reshape2', 'ggplot2', 'ggsci', 'readr',
  'lubridate'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'curl', 'httr', 'dplyr', 'purrr', 'stevedore', 'magick',
  'scales', 'formatR', 'openssl', 'stringi', 'HARtools', 'jsonlite',
  'lubridate'

Packages suggested but not available for checking:
  'testthat', 'tibble', 'jpeg', 'png', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mosaic', 'ggplot2', 'treeClust', 'mclust'

Packages suggested but not available for checking:
  'R.rsp', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'corpcor', 'matrixStats'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lbfgs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'vctrs', 'mvnfast', 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tidyr', 'dplyr', 'Rcpp', 'robustbase', 'ggplot2', 'plyr',
  'patchwork'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tibble', 'psych', 'bcaboot', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'multicool', 'glmnet', 'doParallel', 'foreach', 'caret'

Packages suggested but not available for checking: 'testthat', 'mvnfast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'gsl'

Package which this enhances but not available for checking: 'tree'
Package required but not available: 'data.table'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ranger'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'emulator', 'miscTools', 'penalized', 'ggplot2', 'gridExtra',
  'plot3D', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spdep', 'plm', 'maxLik', 'bdsmatrix', 'ibdreg', 'spam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Package required but not available: 'pls'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'splusTimeDate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.utils', 'neurobase', 'matlabr', 'oro.nifti', 'git2r'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kirby21.t1', 'kirby21.fmri', 'scales', 'httr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'raster', 'rgeos'

Packages suggested but not available for checking:
  'testthat', 'covr', 'antaresViz'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'nleqslv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'fields', 'vegan', 'doParallel', 'foreach', 'ggplot2', 'spdep',
  'rARPACK', 'RColorBrewer'

Packages suggested but not available for checking: 'R.rsp', 'rgdal'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gstat', 'sp', 'randomForest', 'psy', 'gbm', 'biomod2', 'ranger'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat.geom', 'spatstat.core', 'spatstat.linnet', 'spatstat',
  'leaflet', 'shiny', 'sp', 'raster', 'maptools', 'rgdal',
  'shinythemes', 'prodlim'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'shape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spdep', 'maptools', 'rgeos', 'sp', 'sf', 'raster', 'igraph',
  'cubature', 'future.apply', 'ggplot2', 'progressr', 'data.table',
  'SearchTrees', 'Rcpp', 'RcppProgress', 'RcppArmadillo'

Packages suggested but not available for checking:
  'future', 'testthat', 'knitr', 'kableExtra', 'rmarkdown',
  'RColorBrewer', 'classInt', 'reshape2', 'dplyr', 'rlang', 'rgdal',
  'plot3D'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'NMF'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'Formula', 'RANN'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgbif', 'rbison', 'rebird', 'rvertnet', 'ridigbio', 'lubridate',
  'crul', 'whisker', 'jsonlite', 'data.table', 'tibble', 'wellknown'

Packages suggested but not available for checking:
  'testthat', 'taxize', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgdal', 'sp', 'tree'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'fortunes', 'ggplot2'
Packages unavailable to check Rd xrefs: 'fortunes', 'ggplot2'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  > # Note that you would never run this file directly. This is used by tools::testInstallPackages()
  > # and other packages like covr.
  > # To actually run the tests, you need to set the working directory then run
  > # devtools::test()
  > 
  > # This line ensures that R CMD check can run tests.
  > # See https://github.com/hadley/testthat/issues/144
  > Sys.setenv("R_TESTS" = "")
  > 
  > library(spongebob)
  > 
  > testthat::test_check('spongebob')
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Packages required but not available: 'magrittr', 'ggplot2', 'jpeg', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'png', 'latexpdf'

Packages suggested but not available for checking:
  'testthat', 'magrittr', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'data.table', 'ggplot2'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'lobstr', 'magrittr', 'pkgdown', 'rmarkdown',
  'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'archetypes'
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
fetch_NBAPlayerStatistics: no visible global function definition for
  'read.table'
Undefined global functions or variables:
  read.table
Consider adding
  importFrom("utils", "read.table")
to your NAMESPACE file.
Note: found 8 marked Latin-1 strings
  Note: found 83 marked UTF-8 strings
Packages required but not available: 'CausalImpact', 'keras'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'glue', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shinyBS', 'smoof', 'shiny', 'shinydashboard', 'SPOT', 'gridExtra',
  'shinyjs', 'rhandsontable', 'XML', 'rclipboard', 'plotly', 'httpuv',
  'shinyFiles', 'batchtools'

Packages suggested but not available for checking:
  'testthat', 'shinytest', 'devtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'dplyr', 'purrr', 'httr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geodist', 'progress', 'dplyr', 'cli', 'patchwork', 'ggrepel',
  'ggExtra', 'ggbeeswarm', 'ggplot2'

Packages suggested but not available for checking:
  'sf', 'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'randomForest', 'ranger', 'DEoptim', 'rgenoud', 'rsm', 'nloptr',
  'ggplot2', 'glmnet', 'SimInf', 'rpart.plot', 'smoof', 'laGP', 'plgp',
  'sensitivity'

Packages suggested but not available for checking:
  'car', 'plotly', 'testthat', 'batchtools', 'knitr', 'microbenchmark',
  'rmarkdown', 'readr', 'party', 'babsim.hospital', 'RColorBrewer'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BalancedSampling', 'sampling', 'pracma', 'WaveSampling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'nleqslv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LinkingTo' for
  'Rcpp' 'BH'
are unused as they have no 'include' directory
Packages required but not available:
  'Rcpp', 'partitions', 'magic', 'mathjaxr'

Packages suggested but not available for checking: 'polynom', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'RColorBrewer', 'rgdal', 'rgeos', 'gstat', 'maptools', 'deldir'
Packages unavailable to check Rd xrefs: 'rgdal', 'rgeos', 'maptools'
Running examples in 'sp-Ex.R' failed
The error most likely occurred in:

> ### Name: disaggregate-methods
> ### Title: disaggregate SpatialLines, SpatialLinesDataFrame,
> ###   SpatialPolygons, or SpatialPolygonsDataFrame objects
> ### Aliases: disaggregate disaggregate-methods
> ###   disaggregate,SpatialPolygons-method
> ###   disaggregate,SpatialPolygonsDataFrame-method
> ###   disaggregate,SpatialLines-method
> ###   disaggregate,SpatialLinesDataFrame-method
> ### Keywords: methods
> 
> ### ** Examples
> 
> Sr1 = Polygon(cbind(c(2,4,4,1,2),c(2,3,5,4,2)), hole = FALSE)
> Sr2 = Polygon(cbind(c(5,4,2,5),c(2,3,2,2)), hole = FALSE)
> Sr3 = Polygon(cbind(c(4,4,5,10,4),c(5,3,2,5,5)), hole = FALSE)
> Sr4 = Polygon(cbind(c(5,6,6,5,5),c(4,4,3,3,4)), hole = TRUE)
> 
> Srs1 = Polygons(list(Sr1, Sr2), "s1/2")
> Srs3 = Polygons(list(Sr3, Sr4), "s3/4")
> sp = SpatialPolygons(list(Srs1,Srs3), 1:2)
> length(sp) ## [1] 2
[1] 2
> length(disaggregate(sp)) ## [1] 3 
Error in explodePolygons(x, ...) : 
  package rgeos is needed to relate holes to their corresponding polygons
Calls: disaggregate -> disaggregate -> explodePolygons
Execution halted
Running 'agg.R'
Running the tests in 'tests/agg.R' failed.
Complete output:
  > options("rgdal_show_exportToProj4_warnings"="none")
  > library(sp)
  > g = SpatialGrid(GridTopology(c(5,5), c(10,10), c(3,3)))
  > p = as(g, "SpatialPolygons")
  > p$z = c(1,0,1,0,1,0,1,0,1)
  > cc = coordinates(g)
  > p$ag1 = aggregate(p, p, mean)[[1]]
  Error in over(by, x, fn = FUN, ...) : 
    package rgeos is required for additional over methods
  Calls: aggregate -> aggregate.Spatial -> over -> over
  Execution halted
Errors in running code in vignettes:
when running code in 'csdacm.Rnw'
  ...

> .iheight <- 6

> .ipointsize <- 12

> library(gstat)

  When sourcing 'csdacm.R':
Error: there is no package called 'gstat'
Execution halted
when running code in 'over.Rnw'
  ...

> pol = SpatialPolygons(list(Polygons(list(Polygon(cbind(xpol - 
+     1.05, ypol))), ID = "x1"), Polygons(list(Polygon(cbind(xpol, 
+     ypol))), ID .... [TRUNCATED] 

> library(RColorBrewer)

  When sourcing 'over.R':
Error: there is no package called 'RColorBrewer'
Execution halted

  'csdacm.Rnw'... failed
  'intro_sp.Rnw'... OK
  'over.Rnw'... failed
Error(s) in re-building vignettes:
--- re-building 'csdacm.Rnw' using Sweave

Error: processing vignette 'csdacm.Rnw' failed with diagnostics:
 chunk 70 
Error in library(gstat) : there is no package called 'gstat'

--- failed re-building 'csdacm.Rnw'

--- re-building 'intro_sp.Rnw' using Sweave
--- finished re-building 'intro_sp.Rnw'

--- re-building 'over.Rnw' using Sweave

Error: processing vignette 'over.Rnw' failed with diagnostics:
 chunk 5 
Error in library(RColorBrewer) : 
  there is no package called 'RColorBrewer'

--- failed re-building 'over.Rnw'

SUMMARY: processing the following files failed:
  'csdacm.Rnw' 'over.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'Rcpp', 'igraph', 'extrafont', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sn', 'ucminf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'swfscMisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'glmnet', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'cvTools', 'pcaPP', 'reshape2', 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
plot.SPRT: no visible global function definition for 'par'
plot.SPRT: no visible global function definition for 'abline'
print.SPRT: no visible global function definition for 'head'
Undefined global functions or variables:
  abline head par
Consider adding
  importFrom("graphics", "abline", "par")
  importFrom("utils", "head")
to your NAMESPACE file.
Packages required but not available:
  'pedometrics', 'Rcpp', 'sp', 'SpatialTools'

Packages suggested but not available for checking: 'gstat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/spsann.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'spsUtil', 'assertthat', 'stringr', 'glue', 'magrittr',
  'bsplus', 'shinyFiles', 'shinyWidgets', 'shinytoastr', 'shinyAce',
  'htmltools', 'vroom', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'shinyjqui'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tester', 'magic', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DEoptim', 'lhs', 'pracma', 'FME', 'hypergeo', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plot3D'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'Formula', 'ggplot2', 'gmodels', 'gridExtra', 'knitr',
  'lmtest', 'minqa', 'numDeriv', 'rlang', 'Rdpack', 'rmarkdown',
  'sparseMVN', 'spatialreg', 'spdep'

Packages suggested but not available for checking:
  'bookdown', 'dplyr', 'sf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crossdes', 'deldir', 'Hmisc', 'rgeos', 'sf', 'sp'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'lwgeom'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'loo', 'coda', 'Rcpp', 'rstan', 'rstantools', 'BH', 'RcppEigen',
  'StanHeaders'

Packages suggested but not available for checking:
  'knitr', 'devtools', 'roxygen2', 'testthat', 'KMsurv'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'assertthat', 'stringr', 'glue', 'magrittr', 'crayon'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'spTimer', 'coda', 'sp', 'spacetime'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'spam', 'fields', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'sp', 'spacetime', 'extraDistr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'survey', 'kyotil'

Packages suggested but not available for checking: 'RUnit', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'matrixcalc', 'mvtnorm', 'ggplot2', 'viridis', 'tibble', 'sp'

Packages suggested but not available for checking:
  'gstat', 'rmarkdown', 'knitr', 'testthat', 'prettydoc', 'rgeos'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gstat', 'magrittr', 'mvtnorm', 'purrr', 'raster', 'sp', 'whisker'

Packages suggested but not available for checking:
  'dplyr', 'GGally', 'gridExtra', 'knitr', 'png', 'readr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'e1071', 'edgeR', 'spatstat', 'spatstat.core', 'spatstat.geom',
  'spatstat.data', 'spatstat.sparse', 'spatstat.utils',
  'spatstat.linnet', 'viridis', 'ggplot2', 'reshape', 'imager',
  'infotheo', 'irlba', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'caret', 'pls'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'limma', 'PDSCE', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gsubfn', 'proto', 'RSQLite', 'DBI', 'chron'

Packages suggested but not available for checking:
  'RH2', 'RMySQL', 'RPostgreSQL', 'svUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'functional', 'DBI', 'RSQLite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'reticulate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'shiny', 'shinydashboard'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dbplyr'

Packages suggested but not available for checking:
  'testthat', 'arm', 'glmnet', 'mboost', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'roxygen2', 'stringr', 'DBI'

Packages suggested but not available for checking: 'sqldf', 'xtable'

Packages which this enhances but not available for checking:
  'RPostgreSQL', 'RODBC', 'RMySQL', 'RSQLite', 'RJDBC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mclust', 'nor1mix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'RcppArmadillo', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RODBC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'setRNG'
Running examples in 'SQUAREM-Ex.R' failed
The error most likely occurred in:

> ### Name: fpiter
> ### Title: Fixed-Point Iteration Scheme
> ### Aliases: fpiter
> 
> ### ** Examples
> 
> 
> ##############################################################################
> # Example 1:  EM algorithm for Poisson mixture estimation 
> poissmix.em <- function(p,y) {
+ # The fixed point mapping giving a single E and M step of the EM algorithm
+ # 
+ pnew <- rep(NA,3)
+ i <- 0:(length(y)-1)
+ zi <- p[1]*exp(-p[2])*p[2]^i / (p[1]*exp(-p[2])*p[2]^i + (1 - p[1])*exp(-p[3])*p[3]^i)
+ pnew[1] <- sum(y*zi)/sum(y)
+ pnew[2] <- sum(y*i*zi)/sum(y*zi)
+ pnew[3] <- sum(y*i*(1-zi))/sum(y*(1-zi))
+ p <- pnew
+ return(pnew)
+ }
> 
> poissmix.loglik <- function(p,y) {
+ # Objective function whose local minimum is a fixed point \
+ # negative log-likelihood of binary poisson mixture
+ i <- 0:(length(y)-1)
+ loglik <- y*log(p[1]*exp(-p[2])*p[2]^i/exp(lgamma(i+1)) + 
+ 		(1 - p[1])*exp(-p[3])*p[3]^i/exp(lgamma(i+1)))
+ return ( -sum(loglik) )
+ }
> 
> # Real data from Hasselblad (JASA 1969)
> poissmix.dat <- data.frame(death=0:9, freq=c(162,267,271,185,111,61,27,8,3,1))
> y <- poissmix.dat$freq
> tol <- 1.e-08
> 
> # Use a preset seed so the example is reproducible. 
> require("setRNG")
Loading required package: setRNG
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'setRNG'
> old.seed <- setRNG(list(kind="Mersenne-Twister", normal.kind="Inversion",
+     seed=54321))
Error in setRNG(list(kind = "Mersenne-Twister", normal.kind = "Inversion",  : 
  could not find function "setRNG"
Execution halted
Running 'Hasselblad1969.R'
Running the tests in 'tests/Hasselblad1969.R' failed.
Last 13 lines of output:
  Warning message:
  In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
    there is no package called 'setRNG'
  > 
  > # data for Poisson mixture estimation  from Hasselblad (JASA 1969)
  > poissmix.dat <- data.frame(death=0:9, freq=c(162,267,271,185,111,61,27,8,3,1))
  > 
  > y <- poissmix.dat$freq
  > tol <- 1.e-08
  > 
  > # generate a random initial guess for 3 parameters
  > setRNG(list(kind="Wichmann-Hill", normal.kind="Box-Muller", seed=123))
  Error in setRNG(list(kind = "Wichmann-Hill", normal.kind = "Box-Muller",  : 
    could not find function "setRNG"
  Execution halted
Errors in running code in vignettes:
when running code in 'SQUAREM.Rnw'
  ...
Loading required package: setRNG
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'setRNG'

> setRNG(list(kind = "Wichmann-Hill", normal.kind = "Box-Muller", 
+     seed = 123))

  When sourcing 'SQUAREM.R':
Error: could not find function "setRNG"
Execution halted

  'SQUAREM.Rnw'... failed
Error(s) in re-building vignettes:
  ...
--- re-building 'SQUAREM.Rnw' using Sweave
Loading required package: setRNG
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'setRNG'

Error: processing vignette 'SQUAREM.Rnw' failed with diagnostics:
 chunk 3 (label = rng) 
Error in setRNG(list(kind = "Wichmann-Hill", normal.kind = "Box-Muller",  : 
  could not find function "setRNG"

--- failed re-building 'SQUAREM.Rnw'

SUMMARY: processing the following file failed:
  'SQUAREM.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'dplyr', 'plyr', 'tibble', 'lubridate', 'stringr', 'tidyr', 'rvest',
  'polite', 'naniar', 'janitor', 'Hmisc', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'ggplot2', 'lme4', 'arm', 'data.table'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'dplyr', 'jsonlite'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'RSQLite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'
Packages unavailable to check Rd xrefs: 'RColorBrewer', 'colorspace'
Packages required but not available:
  'doParallel', 'elasticnet', 'foreach', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages which this enhances but not available for checking:
  'amen', 'TripleR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following hidden files and directories:
  .Rapp.history
  inst/script/.Rapp.history
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
File
  LICENSE
is not mentioned in the DESCRIPTION file.
File 'sROC/R/onload.R':
  .onLoad calls:
    packageStartupMessage("sROC 0.1-2 loaded")

See section 'Good practice' in '?.onAttach'.

AUC : TrapezInt: no visible global function definition for 'approx'
AUC : SimpsonInt: no visible global function definition for 'approx'
CI.CDF: no visible global function definition for 'qnorm'
bw.CDF: no visible global function definition for 'sd'
bw.CDF: no visible global function definition for 'IQR'
bw.CDF.pi: no visible global function definition for 'sd'
bw.CDF.pi: no visible global function definition for 'bw.nrd0'
bw.CDF.pi: no visible global function definition for 'bw.nrd'
bw.CDF.pi: no visible global function definition for 'bw.ucv'
bw.CDF.pi: no visible global function definition for 'bw.bcv'
bw.CDF.pi: no visible global function definition for 'bw.SJ'
bw.CDF.pi: no visible global function definition for 'IQR'
plot.CDF: no visible global function definition for 'plot.default'
plot.CDF: no visible global function definition for 'lines'
plot.CDF: no visible global function definition for 'polygon'
plot.ROC: no visible global function definition for 'plot.default'
plot.ROC: no visible global function definition for 'abline'
Undefined global functions or variables:
  IQR abline approx bw.SJ bw.bcv bw.nrd bw.nrd0 bw.ucv lines
  plot.default polygon qnorm sd
Consider adding
  importFrom("graphics", "abline", "lines", "plot.default", "polygon")
  importFrom("stats", "IQR", "approx", "bw.SJ", "bw.bcv", "bw.nrd",
             "bw.nrd0", "bw.ucv", "qnorm", "sd")
to your NAMESPACE file.
Package required but not available: 'fda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'vegan', 'shiny', 'DT', 'shinycssloaders', 'shinybusy'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat', 'tibble'
'LazyData' is specified without a 'data' directory
Running 'spelling.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'rlang', 'survey', 'tibble', 'tidyr',
  'tidyselect'

Packages suggested but not available for checking:
  'convey', 'DBI', 'dbplyr', 'ggplot2', 'knitr', 'laeken', 'rmarkdown',
  'pander', 'RSQLite', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'r4ss', 'gtools', 'ggplot2', 'bbmle'

Packages suggested but not available for checking:
  'knitr', 'doParallel', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tsBSS', 'ICtest', 'JADE', 'BSSprep', 'ggplot2', 'xts', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pcaPP', 'robustbase', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'proxy'

Packages suggested but not available for checking:
  'caret', 'e1071', 'C50', 'kernlab', 'testthat', 'timeDate',
  'stringi', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'psych', 'TTR', 'MAd', 'metafor', 'SingleCaseES'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'bigstatsr', 'chickn', 'RcppParallel', 'glmnet', 'foreach',
  'doParallel', 'doRNG', 'reshape2', 'pracma', 'Rdpack',
  'RcppArmadillo', 'rmio'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'raster', 'earth', 'gbm', 'randomForest', 'dismo', 'e1071',
  'ggplot2', 'reshape2', 'scales', 'shiny', 'shinydashboard',
  'shinyFiles', 'spThin', 'poibin'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'rgdal'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ssd : correction_method_D: no visible global function definition for
  'rnorm'
ssd : generate_bootstrap: no visible global function definition for
  'rmultinom'
ssd : bootstrap_method: no visible global function definition for
  'median'
ssd : bootstrap_method: no visible global function definition for
  'quantile'
ssd : unbalanced_generate_bootstrap: no visible global function
  definition for 'rmultinom'
ssd : unbalanced_bootstrap_method: no visible global function
  definition for 'median'
ssd : unbalanced_bootstrap_method: no visible global function
  definition for 'quantile'
ssd: no visible global function definition for 'qchisq'
Undefined global functions or variables:
  median qchisq quantile rmultinom rnorm
Consider adding
  importFrom("stats", "median", "qchisq", "quantile", "rmultinom",
             "rnorm")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'chk', 'fitdistrplus', 'abind', 'actuar', 'ggplot2', 'lifecycle',
  'tibble', 'scales', 'VGAM', 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat', 'readr', 'rlang', 'purrr',
  'tidyr', 'dplyr', 'R.rsp', 'mle.tools', 'reshape2'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'pwr', 'MESS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'maxLik', 'spdep', 'sp'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'survey'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'BDgraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'stringr', 'gtools', 'BIGDAWG', 'gmt', 'DescTools',
  'dplyr', 'sessioninfo', 'filesstrings'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'credentials', 'askpass'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling', 'sys', 'testthat', 'mongolite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Biobase', 'edgeR', 'limma', 'qvalue', 'ssize.fdr'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/ssizeRNA.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'parsnip', 'plyr', 'dplyr', 'magrittr', 'purrr', 'rlang', 'proxy',
  'generics', 'RANN', 'foreach', 'RSSL', 'conclust', 'Rcpp',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'caret', 'tidymodels', 'e1071', 'C50', 'kernlab', 'testthat',
  'doParallel', 'tidyverse', 'factoextra', 'covr', 'kknn',
  'randomForest', 'ranger', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mnormt', 'moments', 'truncdist', 'sn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'CircStats', 'dtw', 'ggplot2',
  'cowplot', 'BH', 'RcppEigen', 'StanHeaders'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'sampleSelection', 'robustbase'

Package suggested but not available for checking: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'MCMCpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RSQLite', 'sp', 'igraph', 'maptools', 'rgdal', 'rgeos', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'mvtnorm', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2', 'gganimate', 'gifski'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
map.world: no visible global function definition for 'par'
map.world: no visible global function definition for 'plot.new'
map.world: no visible global function definition for 'plot.window'
map.world: no visible global function definition for 'lines'
map.world: no visible global function definition for 'title'
map.world: no visible global function definition for 'axis'
map.world: no visible global function definition for 'box'
plot.smooth.sspline: no visible global function definition for
  'predict'
plot.smooth.sspline: no visible global function definition for
  'filled.contour'
plot.smooth.sspline: no visible binding for global variable
  'terrain.colors'
plot.smooth.sspline: no visible global function definition for 'title'
plot.smooth.sspline: no visible global function definition for 'axis'
station: no visible binding for global variable 'WTdiff'
station: no visible global function definition for 'points'
Undefined global functions or variables:
  WTdiff axis box filled.contour lines par plot.new plot.window points
  predict terrain.colors title
Consider adding
  importFrom("grDevices", "terrain.colors")
  importFrom("graphics", "axis", "box", "filled.contour", "lines", "par",
             "plot.new", "plot.window", "points", "title")
  importFrom("stats", "predict")
to your NAMESPACE file.
Packages required but not available: 'vegan', 'sampling', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RDS', 'scam', 'coda'

Packages suggested but not available for checking: 'network', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shape', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'sna'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'statmod', 'sfsmisc'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'survRM2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'purrr', 'rlang', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'scanstatistics'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'caret', 'e1071'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tgp'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'changepoint', 'e1071', 'ggplot2', 'VGAM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Package suggested but not available for checking: 'maps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'assertthat'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'randomForest', 'foreach', 'dplyr', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'readxl', 'openxlsx', 'shiny', 'shinydashboard'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
error.est : <anonymous>: no visible global function definition for
  'median'
holm.robust: no visible global function definition for 'pnorm'
holm.robust: no visible global function definition for 'median'
holm.robust: no visible global function definition for 'mad'
huberize: no visible global function definition for 'quantile'
ssvd.initial: no visible global function definition for 'mad'
ssvd.iter.thresh: no visible global function definition for 'mad'
Undefined global functions or variables:
  mad median pnorm quantile
Consider adding
  importFrom("stats", "mad", "median", "pnorm", "quantile")
to your NAMESPACE file.
Packages required but not available:
  'GIGrvg', 'numDeriv', 'normalp', 'Formula', 'sandwich'

Packages suggested but not available for checking: 'NISTnls', 'gam', 'sn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggfortify', 'lme4', 'magrittr', 'matrixStats',
  'reshape2', 'rlang', 'scales', 'tibble', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'glmnet', 'corpcor', 'ggplot2', 'ggrepel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'fBasics', 'FMStable', 'RUnit', 'Rmpfr', 'sfsmisc'
Packages unavailable to check Rd xrefs: 'FMStable', 'fBasics'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'stabledist', 'testthat', 'numDeriv', 'xtable', 'fBasics'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mcmcse', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'e1071', 'partykit', 'party', 'randomForest', 'ranger'

Packages suggested but not available for checking:
  'Formula', 'evtree', 'rchallenge', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rmutil', 'stabledist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggm', 'matrixcalc', 'sem', 'nsga2R', 'graph', 'Rgraphviz',
  'polycor', 'foreach'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'checkmate'

Packages suggested but not available for checking:
  'cowplot', 'ggdendro', 'ggplot2', 'igraph', 'knitr', 'mlbench',
  'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'glmnet', 'lars', 'mboost', 'gamboostLSS', 'TH.data', 'hdi',
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'mboost'
'LazyData' is specified without a 'data' directory
Packages unavailable to check Rd xrefs: 'pryr', 'functional', 'dplyr', 'ks', 'purrr', 'data.table'
Packages required but not available:
  'tune', 'dplyr', 'rlang', 'tibble', 'purrr', 'parsnip', 'workflows',
  'recipes', 'rsample', 'workflowsets', 'butcher', 'yardstick',
  'tidyr', 'dials', 'glue', 'ggplot2', 'glmnet', 'cli', 'foreach',
  'generics'

Packages suggested but not available for checking:
  'testthat', 'covr', 'kernlab', 'knitr', 'modeldata', 'rmarkdown',
  'palmerpenguins', 'ranger', 'kknn'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RODBC', 'xtable'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'bnlearn', 'covr', 'clue'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'deSolve', 'PBSddesolve'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pegas', 'doParallel', 'foreach', 'adegenet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'rgeos', 'raster', 'rgdal', 'maptools', 'deldir', 'spdep'

Package suggested but not available for checking: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'np', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'stringr'

Packages suggested but not available for checking:
  'afex', 'emmeans', 'knitr', 'lmerTest', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
find.names: no visible global function definition for 'na.omit'
generate.names: no visible global function definition for 'na.omit'
standardize.countrynames: no visible global function definition for
  'data'
standardize.names: no visible global function definition for 'na.omit'
Undefined global functions or variables:
  data na.omit
Consider adding
  importFrom("stats", "na.omit")
  importFrom("utils", "data")
to your NAMESPACE file.
Packages required but not available: 'RcppParallel', 'RcppEigen'

Packages suggested but not available for checking:
  'Rcpp', 'BH', 'knitr', 'rmarkdown', 'rstan'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'matrixStats', 'RNifti'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'assertthat', 'glue', 'XML', 'rJava'

Packages suggested but not available for checking: 'testthat', 'pdftools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'geoTS', 'foreach', 'trend', 'doParallel', 'iterators',
  'mapview', 'RColorBrewer', 'rgdal'

Package suggested but not available for checking: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'eemR', 'dplyr', 'tidyr', 'stringr', 'pracma', 'zoo',
  'tibble', 'multiway', 'GGally', 'doParallel', 'drc', 'foreach',
  'data.table', 'matrixStats', 'MBA', 'cdom', 'R.matlab', 'readr',
  'gtools', 'httr', 'askpass'

Packages suggested but not available for checking:
  'plotly', 'xlsx', 'knitr', 'kableExtra', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages which this enhances but not available for checking:
  'AER', 'betareg', 'brglm', 'censReg', 'dynlm', 'eha', 'erer', 'ergm',
  'fGarch', 'gee', 'glmx', 'gmm', 'lfe', 'lme4', 'lmtest', 'mclogit',
  'mlogit', 'mnlogit', 'ordinal', 'plm', 'pscl', 'quantreg', 'rms',
  'relevent', 'robustbase', 'sampleSelection', 'spdep', 'survey',
  'Zelig'
Packages required but not available:
  'Rcpp', 'ggplot2', 'scales', 'RcppArmadillo'

Package suggested but not available for checking: 'spdep'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Namespace in Imports field not imported from: 'Matrix'
  All declared Imports should be used.
Errors in running code in vignettes:
when running code in 'estima.Rnw'
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  'estima.Rnw' using 'UTF-8'... failed to complete the test
Packages required but not available: 'glmnet', 'cornet'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown'

Packages which this enhances but not available for checking:
  'CVXR', 'mvtnorm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R2HTML', 'gss'

Packages suggested but not available for checking:
  'HiddenMarkov', 'snow', 'rstream'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'readr', 'tibble', 'tidyr', 'tidyselect', 'snakecase',
  'purrr', 'rlang', 'pander', 'generics'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'stars', 'nngeo', 'units'

Packages suggested but not available for checking:
  'tinytest', 'knitr', 'rmarkdown', 'raster'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'sf', 'classInt', 'lwgeom', 'rlang', 'units'

Packages suggested but not available for checking:
  'PCICt', 'RNetCDF', 'clue', 'covr', 'cubelyr', 'digest', 'dplyr',
  'exactextractr', 'future.apply', 'ggforce', 'ggplot2', 'ggthemes',
  'gstat', 'httr', 'jsonlite', 'knitr', 'maps', 'mapdata', 'ncdfgeom',
  'ncmeta', 'pbapply', 'plm', 'randomForest', 'raster', 'rgdal',
  'rmarkdown', 's2', 'sp', 'spacetime', 'spatstat', 'spatstat.geom',
  'starsdata', 'terra', 'testthat', 'viridis', 'xts', 'zoo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'bigmemory', 'future', 'multiApply', 'easyNCDF',
  's2dverification', 'ClimProjDiags'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CDM', 'LAM', 'sirt', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'lavaan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'commonmark'
Error(s) in re-building vignettes:
  ...
--- re-building 'startup-intro.md' using selfonly
Error: processing vignette 'startup-intro.md' failed with diagnostics:
there is no package called 'commonmark'
--- failed re-building 'startup-intro.md'

SUMMARY: processing the following file failed:
  'startup-intro.md'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'ks', 'zoo', 'data.table', 'dplyr', 'matrixcalc', 'vars', 'maxLik',
  'rlist', 'fGarch', 'lubridate', 'xts', 'lessR', 'quantmod'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'ggplot2', 'tibble', 'rlang', 'tidyr',
  'patchwork', 'purrr', 'readr', 'stringr', 'yaml', 'lpSolve',
  'gtools', 'data.tree', 'RColorBrewer', 'zoo', 'car', 'flexmix',
  'arrow', 'Rcpp', 'BH'

Packages suggested but not available for checking: 'testthat', 'viridis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'duckdb', 'magrittr', 'tibble'

Packages suggested but not available for checking:
  'dbplyr', 'dm', 'dplyr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'rmarkdown', 'psycho', 'dplyr', 'corrgram', 'Hmisc',
  'rpivotTable', 'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'tidyselect', 'dplyr', 'ggplot2', 'lazyeval',
  'matrixStats', 'rlang', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'lubridate', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'curl'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RGtk2', 'R2HTML', 'gWidgets2', 'gWidgets2RGtk2', 'multcomp',
  'cairoDevice', 'car', 'clinfun', 'coxme', 'RSCABS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'ggplot2', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sgeostat', 'e1071', 'MBA', 'rgl', 'robustbase', 'xtable', 'sp',
  'geoR'

Package suggested but not available for checking: 'mclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'viridis', 'RColorBrewer', 'covr', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rdpack', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'numDeriv', 'optimx', 'rmarkdown', 'YieldCurve'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'rlang', 'lifecycle'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'stringr', 'knitr', 'rmarkdown', 'covr',
  'pkgdown', 'DT'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sets'

Packages suggested but not available for checking:
  'extraDistr', 'invgamma', 'VGAM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ggplot2', 'sommer', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'officer', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'emmeans', 'ggplot2', 'gridExtra', 'knitr', 'lme4', 'statgenSTA',
  'xtable'

Packages suggested but not available for checking:
  'asreml', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'animation', 'factoextra', 'ggforce', 'ggplot2', 'gridExtra',
  'locfit', 'lubridate', 'reshape2', 'scales', 'SpATS'

Packages suggested but not available for checking:
  'asreml', 'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'emmeans', 'ggplot2', 'ggrepel', 'gridExtra', 'knitr', 'lme4',
  'mapproj', 'maps', 'qtl', 'scales', 'SpATS', 'xtable'

Packages suggested but not available for checking:
  'asreml', 'rmarkdown', 'testthat', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'rARPACK', 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'readr', 'downloader', 'lubridate', 'lutz', 'progress',
  'stringr', 'tidyr', 'magrittr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kutils', 'rmarkdown', 'knitr'

Packages suggested but not available for checking:
  'rockchalk', 'xtable', 'lavaan', 'psych', 'pander'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'clue'

Packages suggested but not available for checking: 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'proxy', 'survey', 'lpSolve', 'ggplot2'

Packages suggested but not available for checking:
  'Hmisc', 'mipfp', 'R.rsp', 'clue', 'RANN'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'tweedie'
Package unavailable to check Rd xrefs: 'tweedie'
Packages required but not available: 'coda', 'rle'

Package suggested but not available for checking: 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tergm', 'ergm.count', 'sna', 'tsna', 'ergm', 'network',
  'networkDynamic', 'statnet.common'

Packages suggested but not available for checking:
  'ergm.rank', 'ergm.ego', 'EpiModel', 'degreenet', 'latentnet',
  'networksis', 'relevent', 'ndtv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'ergm', 'network', 'latticeExtra', 'sna', 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'dplyr', 'httr', 'jsonlite', 'lifecycle', 'lubridate',
  'magrittr', 'purrr', 'readr', 'rlang', 'stringi', 'stringr',
  'tibble', 'tidyr', 'usethis', 'xml2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'VGAM', 'magicaxis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'tidytext', 'wordcloud'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'truncdist', 'plyr', 'ggplot2'

Packages suggested but not available for checking: 'gridExtra', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'rmarkdown', 'psycho', 'dplyr', 'corrgram', 'Hmisc',
  'rpivotTable', 'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'readr'

Packages suggested but not available for checking:
  'curl', 'dplyr', 'ggplot2', 'knitr', 'lubridate', 'rmarkdown',
  'stringr', 'testthat', 'tidyr', 'pkgdown', 'kableExtra', 'leaflet',
  'geojsonsf', 'htmltools', 'tmap', 'jsonlite', 'pct', 'spatstat.core',
  'spatstat.geom', 'spatstat', 'osmdata', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BayesFactor', 'correlation', 'dplyr', 'effectsize', 'insight',
  'ipmisc', 'parameters', 'performance', 'rlang', 'tidyr', 'WRS2'

Packages suggested but not available for checking:
  'afex', 'ggplot2', 'knitr', 'metaBMA', 'metafor', 'metaplus',
  'purrr', 'rmarkdown', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BayesFactor', 'dplyr', 'rmarkdown', 'knitr', 'ggplot2', 'broom',
  'gridExtra', 'shiny', 'cubature', 'tidyr', 'tibble'

Packages suggested but not available for checking:
  'spelling', 'HistData', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'httr', 'curl', 'dplyr', 'rlang'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Biobase', 'ggplot2', 'GGally', 'dplyr', 'reshape2', 'ggdendro',
  'tibble', 'ggfortify', 'ggrepel', 'gbm', 'forestplot', 'rpart.plot',
  'gridExtra', 'pROC', 'factoextra', 'pvca', 'limma', 'randomForest',
  'glmnet', 'knitr', 'rmarkdown', 'pheatmap', 'RColorBrewer',
  'tidyverse', 'magrittr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'VCA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'sf', 'dplyr', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available: 'data.table', 'numDeriv', 'drgee'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'clue', 'combinat'

Packages suggested but not available for checking:
  'irlba', 'JADE', 'ProDenICA', 'fastICA', 'energy'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
getStp: no visible global function definition for 'lm'
plot.steeptest: no visible global function definition for 'axis'
plot.steeptest: no visible global function definition for 'box'
plot.steeptest: no visible global function definition for 'lm'
plot.steeptest: no visible global function definition for 'abline'
plot.steeptest: no visible global function definition for 'legend'
plot.steeptest: no visible global function definition for
  'as.graphicsAnnot'
steeptest: no visible global function definition for 'lm'
summary.steeptest: no visible global function definition for 'var'
summary.steeptest: no visible global function definition for 'quantile'
Undefined global functions or variables:
  abline as.graphicsAnnot axis box legend lm quantile var
Consider adding
  importFrom("grDevices", "as.graphicsAnnot")
  importFrom("graphics", "abline", "axis", "box", "legend")
  importFrom("stats", "lm", "quantile", "var")
to your NAMESPACE file.
Package required but not available: 'igraph'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'mvtnorm', 'tmvtnorm', 'MCMCglmm', 'ggplot2', 'distances',
  'Rdpack', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'covr', 'devtools', 'lintr', 'pkgdown', 'rhub', 'roxygen2',
  'spelling', 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'gtools', 'FD', 'vcd', 'ade4', 'geometry', 'ape'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plotly'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'swCRTdesign', 'pwr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'mvtnorm', 'pROC', 'dfoptim', 'caret'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'car', 'rstudioapi', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'lowpassFilter', 'R.cache', 'digest'

Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/StepR.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'raster', 'future', 'future.apply', 'rasterVis',
  'viridisLite', 'memuse'

Packages suggested but not available for checking:
  'testthat', 'fields', 'knitr', 'rmarkdown', 'foreach'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'foreach', 'tseries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bezier', 'rjson', 'shiny', 'Rcpp', 'jpeg', 'tiff', 'png', 'svgViewR'

Package suggested but not available for checking: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tibble', 'testthat'
Note: found 42 marked UTF-8 strings
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'crayon', 'curl', 'jsonlite', 'yaml'

Packages suggested but not available for checking:
  'knitr', 'openssl', 'redux', 'reticulate', 'rmarkdown', 'testthat',
  'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'magrittr', 'broom.mixed', 'labelled', 'arm', 'purrr',
  'tibble', 'dplyr', 'lme4', 'rlang', 'forcats', 'DBI', 'RSQLite',
  'dbplyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rmarkdown'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'doParallel', 'foreach', 'abind', 'fda', 'raster',
  'rasterVis', 'RColorBrewer'

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'brnn', 'kernlab', 'randomForest', 'rrBLUP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gh', 'base64enc', 'fs', 'stringr'

Packages suggested but not available for checking: 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'magrittr', 'testthat', 'data.table', 'tibble', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fitdistrplus', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'purrr', 'readr', 'readxl', 'rlang', 'rvest',
  'sf', 'stringr', 'tibble', 'xml2'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'mapview', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'forecast', 'nnfor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat', 'spatstat.geom', 'spatstat.core', 'spatstat.linnet'

Package suggested but not available for checking: 'plot3D'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'yaImpute', 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'forecast', 'nnfor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'stm', 'tm', 'SnowballC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maptools', 'reshape2', 'sp', 'spacetime', 'zoo', 'nabor', 'gstat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stm', 'markdown', 'shinyjs', 'shinythemes', 'tm', 'shiny', 'shinyBS'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stm', 'tidygraph', 'ggraph', 'igraph', 'ggrepel', 'shiny',
  'shinyBS', 'shinydashboard', 'shinyjs', 'ggplot2', 'purrr',
  'stringr', 'dplyr', 'tibble', 'readr', 'huge', 'scales'

Packages suggested but not available for checking:
  'quanteda', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gnm', 'forecast', 'rootSolve', 'fanplot', 'reshape2', 'fields',
  'RColorBrewer'

Packages suggested but not available for checking:
  'demography', 'knitr', 'xtable', 'MTS'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RcppParallel', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'scales', 'RColorBrewer', 'shiny'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'data.table', 'glmnet', 'lda', 'matrixStats', 'quadprog',
  'quanteda', 'slam', 'stringr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'clue', 'geometry', 'huge', 'igraph', 'LDAvis', 'NLP', 'rsvd',
  'Rtsne', 'SnowballC', 'spelling', 'testthat', 'tm', 'wordcloud'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'truncnorm', 'coda', 'fields', 'rARPACK'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'coda', 'RcppArmadillo'

Packages suggested but not available for checking:
  'mvtnorm', 'testthat', 'knitr', 'LSD', 'RColorBrewer', 'zoo',
  'factorstochvol'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/article2.Rtex'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'TMB', 'ggplot2', 'sn', 'data.table', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'shiny', 'knitr', 'rmarkdown', 'stochvol'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gtools', 'RColorBrewer'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/stockR.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rbenchmark', 'quantmod', 'dvmisc', 'Hmisc', 'lubridate',
  'RColorBrewer', 'Rcpp', 'TTR', 'zoo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pander', 'printr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spray', 'permutations', 'partitions', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'Deriv', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'changepoint', 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ISOcodes'

Packages suggested but not available for checking:
  'covr', 'lintr', 'quanteda', 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'permute', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'digest'

Packages suggested but not available for checking:
  'DBI', 'RSQLite', 'RPostgres', 'knitr', 'mockr', 'progress',
  'rbenchmark', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'data.tree'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/vignette.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'AlgDesign', 'scales', 'scatterplot3d', 'emoa'

Packages suggested but not available for checking:
  'R.rsp', 'EMMREML', 'quadprog', 'UsingR', 'glmnet', 'leaps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'curl', 'dplyr', 'httr', 'jsonlite', 'stringr', 'maptools',
  'raster', 'rgeos', 'geosphere', 'Rcpp', 'igraph', 'nabor', 'rlang',
  'lwgeom', 'sf', 'magrittr', 'sfheaders', 'data.table', 'pbapply',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'dodgr', 'stats19', 'cyclestreets',
  'leaflet', 'rgdal', 'pct', 'tmap', 'bench', 'openxlsx', 'osrm',
  'geodist', 'mapsapi', 's2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'sas7bdat', 'nloptr', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rpanel', 'splancs', 'ggplot2', 'gridExtra', 'plot3D', 'rgl',
  'spatstat.core', 'spatstat.geom'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'checkmate', 'plyr', 'reshape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'Rglpk', 'dplyr', 'tidyr', 'arrow', 'lubridate', 'rlang',
  'yaml', 'ggplot2', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'shiny', 'shinyFiles', 'shinyjs',
  'DT', 'Rsymphony', 'officer', 'flextable', 'plotly'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'geoscale'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'Hmisc', 'magrittr', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'optmatch', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rglpk', 'snowfall', 'stratification'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sna'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'zoo', 'xts'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'deSolve', 'NetIndices'

Packages suggested but not available for checking:
  'knitr', 'StrathE2E2examples', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bnlearn', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'partykit', 'ranger', 'glmnet', 'ggplot2', 'ggparty',
  'mvtnorm'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'BART', 'pROC', 'survRM2', 'TH.data',
  'sandwich', 'coin', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'C50', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'sampling', 'BalancedSampling',
  'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fitdistrplus', 'zipfR', 'actuar', 'triangle', 'mc2d'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'XML', 'dplyr', 'stringr', 'shiny', 'diagram', 'reshape'

Packages suggested but not available for checking:
  'astrochron', 'RFOC', 'tidyverse', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Hmisc', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'memisc', 'Formula', 'mnormt', 'pbivnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'phangorn', 'igraph', 'gmp', 'ggplot2', 'ggtree', 'RcppAlgos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'purrr', 'partitions', 'MultAlloc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FNN', 'ggplot2', 'colorspace', 'pcaPP', 'ks'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sda', 'fdrtool', 'corpcor'

Packages suggested but not available for checking: 'limma', 'samr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'deSolve'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rmpfr', 'dplyr', 'magrittr', 'sp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dismo', 'raster', 'deldir', 'rgeos',
  'ggplot2', 'reshape2', 'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'zoo', 'chron', 'maptools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stream', 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'proxy', 'clue', 'clusterGeneration', 'dbscan', 'fpc', 'mlbench',
  'Rcpp', 'BH'

Packages suggested but not available for checking:
  'animation', 'DBI', 'rJava', 'RSQLite', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'rjson', 'ndjson'

Package suggested but not available for checking: 'ROAuth'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'drc', 'plotrix'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xts', 'XML', 'latticeExtra'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'checkmate', 'magrittr', 'rlang', 'stringi'

Packages suggested but not available for checking:
  'covr', 'knitr', 'purrr', 'rmarkdown', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'microbenchmark', 'ggplot2',
  'dplyr', 'covr', 'BH'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'backports'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'tinytest'
Packages required but not available: 'Rcpp', 'RcppParallel'

Packages suggested but not available for checking:
  'qs', 'knitr', 'rmarkdown', 'usethis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  icu61/common/cstring.h:43:70: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 156 bytes from a string of length 156 [-Wstringop-truncation]
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/stringi/stringi.Rcheck/00install.out' for details.
Found the following sources/headers with CR or CRLF line endings:
  src/uconfig_local.h
Some Unix compilers require LF line endings.
Packages required but not available: 'glue', 'magrittr', 'stringi'

Packages suggested but not available for checking:
  'covr', 'htmltools', 'htmlwidgets', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'faraway', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Package required but not available: 'rlist'

Packages suggested but not available for checking:
  'caret', 'e1071', 'knitr', 'randomForest', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'Rcpp', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Biostrings', 'ShortRead', 'IRanges', 'tidyr', 'tibble', 'dplyr',
  'stringr', 'purrr'

Package suggested but not available for checking: 'STRaitRazoR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatialreg', 'rlang', 'dplyr', 'tidyr', 'purrr', 'magrittr',
  'rgdal', 'testthat', 'rmarkdown', 'knitr'

Packages suggested but not available for checking:
  'splm', 'spdep', 'rgeos', 'sf', 'Ecdat', 'tidycensus', 'ggplot2',
  'patchwork', 'broom'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'aod', 'broom', 'car', 'ggplot2', 'lme4', 'lmerTest', 'lsmeans',
  'mutoss', 'pbkrtest', 'phia', 'survey'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'SparseM', 'quantreg', 'forecast', 'foreach', 'rgl'

Packages suggested but not available for checking:
  'testthat', 'demography', 'knitr', 'rmarkdown', 'doParallel', 'doMC',
  'seasonal'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'zoo', 'sandwich'

Packages suggested but not available for checking:
  'car', 'dynlm', 'e1071', 'foreach', 'lmtest', 'mvtnorm', 'tseries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'zoo', 'sandwich', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'car', 'dynlm', 'e1071', 'foreach', 'lmtest', 'mvtnorm', 'tseries',
  'bfast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'dirmult', 'matrixStats'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'reshape'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'penalized'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'matrixcalc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gWidgets2', 'gridExtra', 'gtable', 'plyr', 'scales',
  'data.table'

Packages suggested but not available for checking:
  'ResourceSelection', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'KFKSDS'

Packages suggested but not available for checking: 'mvtnorm', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'lavaan', 'MplusAutomation'
Package unavailable to check Rd xrefs: 'lavaan'
Running examples in 'stuart-Ex.R' failed
The error most likely occurred in:

> ### Name: bruteforce
> ### Title: Subtest construction using a brute-force approach
> ### Aliases: bruteforce
> 
> ### ** Examples
> 
> 
> # Bruteforce selection in a minimal example
> # selecting 3 of 5 items
> # requires lavaan
> data(fairplayer)
> fs <- list(ra = names(fairplayer)[53:57])
> sel <- bruteforce(fairplayer, fs, 3,
+   cores = 1)  # number of cores set to 1
Loading required namespace: lavaan
Failed with error:  'there is no package called 'lavaan''
Error: lavaan is not installed. You could try or Mplus instead.
Execution halted
Package required but not available: 'testthat'

Packages suggested but not available for checking:
  'mockr', 'rmarkdown', 'knitr', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'readr', 'tidyr', 'dplyr', 'jsonlite', 'tibble', 'R.utils',
  'skimr', 'visdat', 'ggplot2', 'crayon'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caret', 'tidyverse', 'pls', 'nnls', 'CCA', 'MatrixCorrelation',
  'dplyr', 'tibble'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mAr', 'lmom', 'doParallel', 'foreach', 'msm', 'ggplot2', 'moments',
  'hydroGOF', 'zoo', 'data.table', 'xts', 'EmiStatR'

Packages suggested but not available for checking: 'sp', 'spacetime'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ADGofTest', 'numDeriv', 'MCMCpack', 'matlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'crayon'
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'backports', 'cli', 'magrittr', 'purrr', 'R.cache', 'rematch2',
  'rlang', 'rprojroot', 'tibble', 'withr', 'xfun'

Packages suggested but not available for checking:
  'data.tree', 'digest', 'dplyr', 'here', 'knitr', 'prettycode',
  'rmarkdown', 'roxygen2', 'rstudioapi', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'corpus'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'kableExtra'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tcltk2', 'ape', 'pamr', 'e1071', 'tsne'

Packages suggested but not available for checking:
  'stringi', 'networkD3', 'readr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'alluvial', 'circlize', 'colorspace', 'diagram', 'dplyr', 'ggplot2',
  'ggrepel', 'gridBase', 'gridExtra', 'plyr', 'polyclip', 'scales',
  'shape', 'sp', 'survRM2', 'UpSetR', 'VennDiagram'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rgeos'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'lmtest', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'subgxe-Ex.R' failed
The error most likely occurred in:

> ### Name: pasta
> ### Title: pasta for multi-phenotype analysis
> ### Aliases: pasta
> 
> ### ** Examples
> 
> # grab synthetic study for example
> data("studies")
> n.studies <- 5
> study.sizes <- c(nrow(studies[[1]]), nrow(studies[[2]]), nrow(studies[[3]]),
+                    nrow(studies[[4]]), nrow(studies[[5]]))
> study.pvals <- rep(0, n.studies)
> # Correlations of p-values among the studies.
> # In this case the studies were generated independently so its just I
> cor.matrix <- diag(1, n.studies)
> # load the lrtest() function to conduct the likelihood ratio test
> # Used just to generate the input p-values, not required in pasta itself.
> 
> library(lmtest)
Error in library(lmtest) : there is no package called 'lmtest'
Execution halted
Packages required but not available:
  'oro.nifti', 'downloader', 'AnalyzeFMRI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'sensitivityfull'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ade4', 'siar', 'polyclip', 'wordcloud'

Packages suggested but not available for checking:
  'adegraphics', 'ape', 'CircStats', 'deldir', 'maptools', 'pixmap',
  'spdep', 'splancs', 'waveslim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'RBGL', 'BiasedUrn', 'graph'

Package suggested but not available for checking: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'CTT', 'irtoys', 'sirt', 'ltm', 'cocor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'data.table', 'shiny', 'DT', 'shinyjs', 'bsplus', 'jsonlite',
  'colourpicker', 'dplyr', 'randomForestSRC', 'purrr', 'shinyWidgets'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ISwR', 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggvis', 'colorspace', 'stringr', 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'matrixStats'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BiocGenerics', 'GSVA', 'igraph', 'pheatmap', 'rvest', 'xml2',
  'devtools', 'ChemmineR'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'penalized', 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'Biostrings'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'dplyr', 'glue', 'magrittr', 'purrr', 'rlang', 'reticulate',
  'tibble', 'tidyselect'

Packages suggested but not available for checking: 'rstudioapi', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tibble', 'magrittr', 'rlang', 'stringr', 'ggplot2',
  'psych', 'readr', 'tidyr', 'ggrepel', 'patchwork', 'forcats',
  'naniar', 'scales'

Packages suggested but not available for checking:
  'haven', 'writexl', 'knitr', 'DT', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'magrittr'

Packages suggested but not available for checking:
  'sudoku', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'tkrplot'
'library' or 'require' call to 'tkrplot' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
playSudoku : replot: no visible global function definition for 'par'
playSudoku : replot: no visible global function definition for
  'segments'
playSudoku : replot: no visible global function definition for 'text'
playSudoku: no visible global function definition for 'tktoplevel'
playSudoku: no visible global function definition for 'tkwm.title'
playSudoku: no visible global function definition for 'tkrplot'
playSudoku: no visible global function definition for 'tktext'
playSudoku: no visible global function definition for 'tkscrollbar'
playSudoku : <anonymous>: no visible global function definition for
  'tkyview'
playSudoku: no visible global function definition for 'tkconfigure'
playSudoku : <anonymous>: no visible global function definition for
  'tkset'
playSudoku: no visible global function definition for 'tkpack'
playSudoku: no visible global function definition for 'tcl'
playSudoku: no visible global function definition for 'tkcget'
playSudoku : showz: no visible global function definition for
  'tkrreplot'
playSudoku : type: no visible global function definition for 'tkinsert'
playSudoku : type: no visible global function definition for 'tksee'
playSudoku : kb: no visible global function definition for 'tkdestroy'
playSudoku: no visible global function definition for
  'getGraphicsEvent'
playSudoku: no visible global function definition for 'tkbind'
playSudoku: no visible global function definition for 'tkwait.window'
Undefined global functions or variables:
  getGraphicsEvent par segments tcl text tkbind tkcget tkconfigure
  tkdestroy tkinsert tkpack tkrplot tkrreplot tkscrollbar tksee tkset
  tktext tktoplevel tkwait.window tkwm.title tkyview
Consider adding
  importFrom("grDevices", "getGraphicsEvent")
  importFrom("graphics", "par", "segments", "text")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
SUE.fitted.values: no visible global function definition for
  'model.frame'
SUE.lm: no visible global function definition for 'model.frame'
SUE.lm: no visible global function definition for 'lm'
SUE.lm: no visible global function definition for 'anova'
SUE.residuals: no visible global function definition for 'model.frame'
parameters : para2: no visible global function definition for 'uniroot'
parameters: no visible global function definition for 'optimize'
parameters: no visible global function definition for 'uniroot'
Undefined global functions or variables:
  anova lm model.frame optimize uniroot
Consider adding
  importFrom("stats", "anova", "lm", "model.frame", "optimize",
             "uniroot")
to your NAMESPACE file.
Packages required but not available:
  'dplyr', 'geosphere', 'lwgeom', 'progress', 'purrr', 'rlang',
  'rmapshaper', 'sf', 'tibble', 'tidyr', 'utf8'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'pkgdown', 'rmarkdown', 'spData', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'gtable', 'lubridate', 'rlang'

Packages suggested but not available for checking:
  'covr', 'knitr', 'plotly', 'readr', 'rmarkdown', 'testthat', 'tidyr',
  'tsibble', 'viridis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'seqminer', 'GBJ'

Package suggested but not available for checking: 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'base64enc', 'checkmate', 'dplyr', 'htmltools', 'lubridate',
  'magick', 'matrixStats', 'pander', 'pryr', 'rapportools', 'tibble',
  'tidyr'

Packages suggested but not available for checking:
  'forcats', 'kableExtra', 'knitr', 'magrittr', 'rmarkdown',
  'rstudioapi'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'survey', 'spdep', 'ggplot2', 'reshape2', 'viridis', 'sp',
  'shadowtext', 'ggridges', 'data.table', 'RColorBrewer'

Packages suggested but not available for checking:
  'INLA', 'knitr', 'rmarkdown', 'readstata13', 'patchwork', 'rdhs',
  'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'R.rsp', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'd3r', 'dplyr', 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'jsonlite', 'knitr', 'markdown', 'pipeR', 'testthat', 'tidyr',
  'rmarkdown'

Package which this enhances but not available for checking: 'treemap'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'lubridate', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mnormt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'data.table', 'dplyr', 'RCurl', 'jsonlite', 'raster', 'purrr',
  'udunits2', 'RANN', 'cartogram', 'fasterize', 'packcircles',
  'rmapshaper', 'sp', 'spdep', 'Rcpp', 'httr', 'rlang', 'automap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
sunter: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Packages required but not available: 'mvtnorm', 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Packages suggested but not available for checking:
  'amap', 'knitr', 'rmarkdown', 'fields', 'dbscan'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'biclust', 'fabia'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'ggplot2', 'lsr', 'Rdpack'

Packages suggested but not available for checking:
  'car', 'emojifont', 'fMultivar', 'gridExtra', 'knitr', 'lawstat',
  'reshape2', 'rmarkdown', 'sadists', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'R6', 'Rcpp', 'fftw', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'mvtnorm', 'numDeriv'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'gtable', 'magrittr', 'plyr', 'scales',
  'ggdendro'

Packages suggested but not available for checking:
  'knitr', 'RColorBrewer', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nnls', 'cvAUC'

Packages suggested but not available for checking:
  'arm', 'bartMachine', 'biglasso', 'bigmemory', 'caret', 'devtools',
  'e1071', 'earth', 'extraTrees', 'gam', 'gbm', 'genefilter',
  'ggplot2', 'glmnet', 'ipred', 'KernelKnn', 'kernlab', 'knitr',
  'LogicReg', 'mlbench', 'nloptr', 'party', 'polspline', 'prettydoc',
  'quadprog', 'randomForest', 'ranger', 'RhpcBLASctl', 'ROCR',
  'rmarkdown', 'SIS', 'speedglm', 'spls', 'sva', 'testthat', 'xgboost'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
TrainSuperMDS: no visible global function definition for 'rnorm'
TrainSuperMDSOnce: no visible global function definition for 'cmdscale'
TrainSuperMDSOnce: no visible global function definition for 'quantile'
distmat: no visible global function definition for 'dist'
Undefined global functions or variables:
  cmdscale dist quantile rnorm
Consider adding
  importFrom("stats", "cmdscale", "dist", "quantile", "rnorm")
to your NAMESPACE file.
Packages required but not available:
  'R6', 'data.table', 'Rcpp', 'assertthat', 'Metrics', 'BH',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rlang', 'testthat', 'rmarkdown', 'naivebayes', 'ClusterR',
  'FNN', 'ranger', 'caret', 'xgboost', 'glmnet', 'e1071'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'magrittr', 'vctrs', 'stringr', 'purrr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'tibble', 'tidyr', 'car', 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RSpectra', 'psych', 'fBasics', 'R.matlab', 'glmnet', 'matrixStats',
  'timeSeries', 'matlabr', 'spls', 'pracma', 'matlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'R6', 'OpenImageR', 'RcppArmadillo', 'ClusterR'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'afex', 'emmeans', 'ggplot2', 'gridExtra', 'reshape2',
  'dplyr', 'magrittr', 'tidyselect', 'Hmisc', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pwr', 'testthat', 'covr', 'jmvcore'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'prodlim'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'prim'

Packages suggested but not available for checking: 'kernlab', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'magrittr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'xml2', 'jsonlite', 'rcrossref'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'covr', 'fulltext'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/suppdata-intro.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'RcppZiggurat'
Package unavailable to check Rd xrefs: 'RcppZiggurat'
Package suggested but not available for checking: 'DoE.base'
Package unavailable to check Rd xrefs: 'DoE.base'
Packages suggested but not available for checking:
  'crossdes', 'DoE.base', 'support.CEs'
Packages unavailable to check Rd xrefs: 'support.CEs', 'DoE.base', 'crossdes'
Running examples in 'support.BWS3-Ex.R' failed
The error most likely occurred in:

> ### Name: bws3.dataset
> ### Title: Creating a dataset suitable for Case 3 best-worst scaling
> ###   analysis
> ### Aliases: bws3.dataset
> ### Keywords: manip
> 
> ### ** Examples
> 
> # The following lines of code construct choice sets for Case 3 BWS
> # using rotation.design() in the package support.CEs; create a dataset
> # for the analysis using bws3.dataset(); and then conduct a maxdiff model
> # analysis on the basis of a conditional logit model specification
> # using clogit() in the package survival.
> 
> # Load packages
> library(support.CEs)
Error in library(support.CEs) : there is no package called 'support.CEs'
Execution halted
Packages suggested but not available for checking:
  'DoE.base', 'crossdes', 'mlogit', 'gmnl', 'apollo'
Packages unavailable to check Rd xrefs: 'mlogit', 'gmnl', 'apollo', 'DoE.base', 'crossdes'
Running examples in 'support.BWS-Ex.R' failed
The error most likely occurred in:

> ### Name: ricebws1
> ### Title: Consumers' preferences for rice characteristics
> ### Aliases: ricebws1
> ### Keywords: datasets
> 
> ### ** Examples
> 
> # Respondents were asked to select their most and least important
> # characteristics of rice when purchasing rice. Rice characteristics
> # were assumed to be place of origin, variety, price, taste, safety,
> # wash-free rice, and milling date. BWS questions were created from
> # a balanced incomplete block design (BIBD) with seven treatments
> # (items), four columns (four items per question), and seven rows
> # (seven questions).
> 
> # Generate the BIBD using find.BIB() in the crossdes package:
> require("crossdes")
Loading required package: crossdes
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'crossdes'
> set.seed(8041)
> bibd.ricebws1 <- find.BIB(trt = 7, b = 7, k = 4)
Error in find.BIB(trt = 7, b = 7, k = 4) : 
  could not find function "find.BIB"
Execution halted
Packages required but not available: 'DoE.base', 'simex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ProfileLikelihood'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'yaml', 'nomnoml', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'rlist', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pROC', 'glmnet', 'MAP', 'Rcpp', 'foreach', 'doParallel',
  'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'goftest', 'gridExtra'

Packages suggested but not available for checking:
  'ordinal', 'rms', 'testthat', 'VGAM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'ouch', 'geiger'

Package suggested but not available for checking: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'gstat', 'rgeos', 'sp'

Package suggested but not available for checking: 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numDeriv', 'survey', 'abind'

Packages suggested but not available for checking:
  'testthat', 'sampling', 'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'learnr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'latticeExtra', 'lme4', 'msm', 'OrdinalLogisticBiplot', 'logistf',
  'rms', 'mixtools', 'ks', 'rootSolve', 'extraDistr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvnfast', 'plyr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'optimx', 'copula', 'eha', 'lme4', 'msm', 'mvmeta', 'optextras',
  'parfm', 'SurvCorr'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'flexsurv', 'plotrix'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'rms'
Malformed Title field: should not end in a period.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
NB: .First.lib is obsolete and will not be used in R >= 3.0.0

plot.survAUC: no visible global function definition for 'lines'
plot.survErr: no visible global function definition for 'lines'
schemper: no visible global function definition for 'predict'
schemper: no visible global function definition for 'survfit'
schemper: no visible global function definition for 'approx'
Undefined global functions or variables:
  approx lines predict survfit
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "approx", "predict")
to your NAMESPACE file.
Running examples in 'survAUC-Ex.R' failed
The error most likely occurred in:

> ### Name: schemper
> ### Title: Distance-based estimator of survival predictive accuracy
> ###   proposed by Schemper and Henderson
> ### Aliases: schemper
> ### Keywords: classif
> 
> ### ** Examples
> 
> 
> library(rms)
Error in library(rms) : there is no package called 'rms'
Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'mvtnorm', 'ggplot2', 'plyr', 'reshape2', 'directlabels',
  'RcppArmadillo', 'RcppParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'BiocParallel'
Package required but not available: 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'mstate', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Namespace in Imports field not imported from: 'survival'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'cubature', 'mvtnorm', 'simex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'xtable', 'Rcpp', 'polyCub', 'spatstat.geom', 'spatstat'

Packages suggested but not available for checking:
  'gridExtra', 'colorspace', 'scales', 'animation', 'msm', 'spc',
  'quadprog', 'memoise', 'polyclip', 'rgeos', 'gpclib', 'maptools',
  'intervals', 'spdep', 'numDeriv', 'maxLik', 'gsl', 'fanplot',
  'hhh4contacts', 'tinytest', 'coda', 'splancs', 'gamlss', 'INLA',
  'runjags', 'MGLM', 'knitr'

Packages which this enhances but not available for checking:
  'xts', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/hhh4_spacetime.Rnw'
   'inst/doc/twinSIR.Rnw'
   'inst/doc/twinstim.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Iso', 'nloptr', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
AER: no visible binding for global variable 'survexp.fr'
AER: no visible global function definition for 'na.omit'
AER: no visible global function definition for 'survexp'
AER: no visible global function definition for 'poisson'
AER: no visible global function definition for 'glm'
AER: no visible global function definition for 'qnorm'
LR: no visible binding for global variable 'survexp.fr'
LR: no visible global function definition for 'na.omit'
LR: no visible global function definition for 'survexp'
LR: no visible global function definition for 'pchisq'
SMR: no visible binding for global variable 'survexp.fr'
SMR: no visible global function definition for 'na.omit'
SMR: no visible global function definition for 'survexp'
SMR: no visible global function definition for 'qnorm'
SMR: no visible global function definition for 'pchisq'
SMR: no visible global function definition for 'glm'
SMR: no visible binding for global variable 'poisson'
survexp_plot: no visible binding for global variable 'survexp.fr'
survexp_plot: no visible global function definition for 'na.omit'
survexp_plot: no visible global function definition for 'par'
survexp_plot: no visible global function definition for 'survfit'
survexp_plot: no visible global function definition for 'survexp'
survexp_plot: no visible global function definition for 'lines'
survexp_plot: no visible global function definition for 'legend'
survexp_plot: no visible global function definition for 'curve'
survexp_plot: no visible global function definition for 'arrows'
survexp_plot: no visible global function definition for 'points'
Undefined global functions or variables:
  arrows curve glm legend lines na.omit par pchisq points poisson qnorm
  survexp survexp.fr survfit
Consider adding
  importFrom("graphics", "arrows", "curve", "legend", "lines", "par",
             "points")
  importFrom("stats", "glm", "na.omit", "pchisq", "poisson", "qnorm")
to your NAMESPACE file.
Packages required but not available:
  'plyr', 'dplyr', 'functional', 'stringr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'rlang', 'magrittr', 'purrr', 'ggplot2', 'scales', 'tidyr',
  'DT', 'assertthat'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'withr', 'covr', 'rprojroot',
  'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'laeken'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'minqa', 'numDeriv', 'mitools'

Packages suggested but not available for checking:
  'hexbin', 'RSQLite', 'quantreg', 'CompQuadForm', 'DBI', 'AER'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'data.table', 'ggplot2', 'laeken'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'library' or 'require' call to 'survival' which was already attached by Depends.
  Please remove these calls from your code.
Survgini: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  pchisq
Consider adding
  importFrom("stats", "pchisq")
to your NAMESPACE file.
Packages required but not available: 'flexsurv', 'ldbounds', 'mnormt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'flexsurv', 'dplyr', 'ggplot2', 'rms', 'xlsx', 'rstan',
  'tibble', 'BH', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking: 'shinystan', 'INLA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rdpack', 'readr', 'tidyverse', 'glmnet', 'factoextra', 'igraph',
  'useful'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'survC1'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'np', 'doParallel', 'doRNG', 'foreach', 'TPmsm', 'Rcpp', 'ggplot2',
  'gridExtra', 'plotly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rdpack', 'readr', 'R2OpenBUGS', 'tidyverse', 'icenReg', 'ICBayes',
  'dplyr', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'distr6', 'keras', 'pseudo', 'reticulate', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'copula', 'splines2', 'matrixcalc'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available:
  'pracma', 'quadprog', 'kernlab', 'Hmisc'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'stringr', 'magrittr', 'forcats', 'glue'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'survJamda'
Packages required but not available:
  'survivalROC', 'ecodist', 'survcomp', 'survJamda.data'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggpubr', 'gridExtra', 'magrittr', 'maxstat', 'scales',
  'broom', 'dplyr', 'tidyr', 'survMisc', 'purrr', 'tibble', 'rlang',
  'ggtext'

Packages suggested but not available for checking:
  'knitr', 'flexsurv', 'cmprsk', 'markdown', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'knitr', 'KMsurv', 'ggplot2', 'data.table', 'zoo', 'gridExtra',
  'km.ci', 'xtable'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/plots.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'mvtnorm', 'rlang', 'purrr', 'forcats', 'dplyr', 'tidyr',
  'tibble', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'knitr', 'rmarkdown', 'survminer'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'statmod', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'gridExtra', 'ggpubr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ggplot2', 'directlabels'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'eha', 'statmod'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'foreach', 'xtable'

Packages suggested but not available for checking:
  'RColorBrewer', 'latticeExtra', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/survSNP.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'speedglm', 'SuperLearner', 'plyr', 'dplyr', 'tidyr', 'stringr',
  'ggplot2', 'ggsci'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'cmprsk', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'prodlim', 'breakDown', 'ggplot2', 'pec', 'scales', 'survminer'

Packages suggested but not available for checking:
  'CFC', 'covr', 'DALEX', 'knitr', 'markdown', 'randomForestSRC',
  'rmarkdown', 'rms', 'testthat', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'forecast', 'fracdiff', 'robets', 'forecastHybrid'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape2'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/sValues.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'vars', 'expm', 'reshape2', 'ggplot2', 'copula', 'clue', 'pbapply',
  'steadyICA', 'DEoptim', 'zoo', 'strucchange', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'tsDyn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'svGUI', 'rstudioapi'

Packages suggested but not available for checking:
  'covr', 'markdown', 'knitr', 'testthat', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'svDialogs', 'svGUI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'lattice'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
svd3dplot: no visible global function definition for 'wireframe'
svd3dplot: no visible global function definition for 'levelplot'
Undefined global functions or variables:
  levelplot wireframe
'LazyData' is specified without a 'data' directory
Packages required but not available: 'systemfonts', 'cpp11'

Packages suggested but not available for checking:
  'htmltools', 'testthat', 'xml2', 'covr', 'fontquiver', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

Packages suggested but not available for checking: 'htmltools', 'svglite'

Packages which this enhances but not available for checking:
  'gridSVG', 'knitr', 'XML', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'stringr', 'rsvg', 'magick'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'knitr', 'markdown', 'testthat', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'spelling.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'rjson', 'Rook', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'svMisc'

Package suggested but not available for checking: 'svSocket'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'svMisc', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'svMisc'

Packages suggested but not available for checking: 'svHttp', 'svSocket'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'rJava', 'covr', 'knitr', 'markdown', 'testthat', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'spelling.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'reshape2', 'scales', 'gridExtra', 'dplyr', 'ggplot2', 'kernlab'

Packages suggested but not available for checking:
  'testthat', 'magrittr', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'kernlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'memoise', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'svmpath'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'svMisc'

Packages suggested but not available for checking:
  'svHttp', 'spelling', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

Package suggested but not available for checking: 'pvclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'svMisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'svGUI', 'XML', 'RUnit', 'knitr', 'markdown', 'covr', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'RUnit'
Package required but not available: 'svMisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'survey'

Packages suggested but not available for checking:
  'doBy', 'NHANES', 'sampling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rms', 'Hmisc', 'survey'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'survey'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'VGAM', 'survey'

Packages suggested but not available for checking:
  'pscl', 'knitr', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'jsonlite', 'plumber', 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'caret', 'Rdpack'

Packages suggested but not available for checking:
  'doParallel', 'e1071', 'foreach', 'ggplot2', 'glmnet', 'iterators',
  'kernlab', 'knitr', 'mlbench', 'ModelMetrics', 'plyr', 'pROC',
  'randomForest', 'recipes', 'remotes', 'reshape2', 'rmarkdown',
  'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'impute', 'amap', 'gplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'inline'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROCR', 'reshape', 'ggplot2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'e1071', 'LiblineaR', 'SparseM', 'kernlab', 'checkmate', 'BBmisc'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'pack', 'stringr', 'xml2', 'colorspace'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'fftwtools', 'fields', 'signal', 'nloptr', 'knitr',
  'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'broom', 'dplyr', 'forecast', 'lubridate', 'tibble', 'tidyr',
  'timetk', 'rlang'

Packages suggested but not available for checking:
  'forcats', 'knitr', 'rmarkdown', 'testthat', 'purrr', 'readr',
  'robets', 'stringr', 'scales', 'tidyquant', 'tidyverse', 'fracdiff'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lubridate', 'stringr', 'checkmate'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'swephRdata', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'magrittr', 'readr', 'rlang', 'stringr',
  'swfscDAS', 'swfscMisc', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'magrittr', 'purrr', 'readr', 'rlang', 'sf',
  'swfscMisc', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'stringr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggrepel', 'kknn', 'mapdata', 'magrittr',
  'tibble', 'maps', 'rlang', 'sf', 'spatstat.geom', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gee', 'geepack', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'dplyr', 'stringr', 'tibble', 'rvest', 'pdftools',
  'magrittr', 'xml2', 'readr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tidyr', 'dplyr', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rdpack', 'Hmisc', 'nleqslv', 'reshape2', 'plyr', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'mvtnorm', 'spelling', 'Weighted.Desc.Stat', 'knitr',
  'rmarkdown', 'bookdown', 'ggpubr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'swirl', 'stringr', 'yaml', 'rmarkdown', 'whisker', 'shiny',
  'shinyAce', 'base64enc', 'readr'

Packages suggested but not available for checking: 'testthat', 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'testthat', 'httr', 'yaml', 'RCurl', 'digest'

Package suggested but not available for checking: 'stringi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'IDPmisc'
Packages required but not available:
  'arm', 'lme4', 'maptools', 'blme', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'jsonlite', 'magrittr', 'purrr', 'stringr', 'tibble',
  'tidyr', 'lubridate', 'crayon', 'httr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'fda', 'expm', 'HiddenMarkov'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RJSONIO', 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'readr', 'Rcpp', 'tibble', 'tidyr', 'xts', 'zoo'

Packages suggested but not available for checking:
  'DEoptim', 'ggplot2', 'sf', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'SWMPr', 'broom', 'dplyr', 'EnvStats', 'flextable', 'ggplot2',
  'ggthemes', 'leaflet', 'lubridate', 'magrittr', 'maptools',
  'officer', 'purrr', 'RColorBrewer', 'rgdal', 'rgeos', 'rlang',
  'scales', 'sp', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'zoo', 'data.table', 'httr', 'gridExtra', 'maptools',
  'oce', 'dplyr', 'openair', 'RColorBrewer', 'reshape2', 'tictoc',
  'tidyr', 'XML'

Packages suggested but not available for checking:
  'colorspace', 'ggmap', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sybil'

Packages suggested but not available for checking: 'glpkAPI', 'cplexAPI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sybil'

Packages suggested but not available for checking: 'cplexAPI', 'glpkAPI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sybil'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'glpkAPI', 'cplexAPI', 'clpAPI', 'lpSolveAPI'
Package unavailable to check Rd xrefs: 'glpkAPI'
Running examples in 'sybil-Ex.R' failed
The error most likely occurred in:

> ### Name: SYBIL_SETTINGS
> ### Title: Set and Get sybil Parameters
> ### Aliases: SYBIL_SETTINGS SOLVER METHOD TOLERANCE MAXIMUM ALGORITHM
> ###   OPT_DIRECTION USE_NAMES PATH_TO_MODEL SOLVER_CTRL_PARM
> ### Keywords: optimize
> 
> ### ** Examples
> 
>   ## show all current parameters
>   SYBIL_SETTINGS()
$MODELORG_VERSION
[1] "2.0"

$SOLVER
[1] "glpkAPI"

$METHOD
[1] "simplex"

$TOLERANCE
[1] 1e-06

$MAXIMUM
[1] 1000

$ALGORITHM
[1] "fba"

$OPT_DIRECTION
[1] "max"

$USE_NAMES
[1] FALSE

$PATH_TO_MODEL
[1] "."

$SOLVER_CTRL_PARM
  NA
1 NA

>   
>   ## show current setting for "SOLVER"
>   SYBIL_SETTINGS("SOLVER")
[1] "glpkAPI"
> 
>   ## change current solver to glpkAPI
>   SYBIL_SETTINGS("SOLVER", "glpkAPI")
Loading required package: glpkAPI
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'glpkAPI'
Error in checkDefaultMethod(solver = value, method = "", probType = "",  : 
  package 'glpkAPI' not found
Calls: SYBIL_SETTINGS -> checkDefaultMethod
Execution halted
Errors in running code in vignettes:
when running code in 'sybil.Rnw'
  ...
number of exchange reactions: 20

> optL <- optimizeProb(Ec_core, algorithm = "fba", retOptSol = FALSE)
Loading required package: glpkAPI
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'glpkAPI'

  When sourcing 'sybil.R':
Error: package 'glpkAPI' not found
Execution halted

  'sybil.Rnw' using 'UTF-8'... failed
Error(s) in re-building vignettes:
--- re-building 'sybil.Rnw' using Sweave
Loading required package: Matrix
Loading required package: lattice
reading model description, ... OK
reading metabolite list ... OK
parsing reaction list ... OK
GPR mapping ... OK
sub systems ... OK
prepare modelorg object ... OK
validating object ... OK
Loading required package: glpkAPI
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'glpkAPI'

Error: processing vignette 'sybil.Rnw' failed with diagnostics:
 chunk 13 
Error in checkDefaultMethod(solver, method, pType) : 
  package 'glpkAPI' not found

--- failed re-building 'sybil.Rnw'

SUMMARY: processing the following file failed:
  'sybil.Rnw'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'purrr', 'stringr', 'tibble', 'tidyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sylly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'sylly.de', 'sylly.en', 'sylly.es'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # the tests are realized using the "testthat" package
  > # and can be found in ./tests
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'clusterSim', 'XML', 'rgl', 'shapes', 'e1071', 'ade4', 'RSDA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'arrangements', 'fs'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'Hmisc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'LinkedMatrix', 'ff', 'bit'

Packages suggested but not available for checking:
  'BGData', 'BEDMatrix', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'crayon', 'pracma', 'odeintr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'Rdpack', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'sn', 'fGarch', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'cubature', 'combinat', 'multipol'

Packages suggested but not available for checking: 'ape', 'mpoly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'OpenMx', 'metaSEM', 'Ryacas', 'mvtnorm'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bigmemory.sri', 'Rcpp', 'uuid', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'vegan', 'FD', 'permute', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tkrplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'L1pack', 'Rdpack'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'stabledist'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'magrittr', 'sf', 'rnaturalearth',
  'rnaturalearthdata', 'metR', 'raster', 'RNCEP', 'stringr', 'tidyr',
  'tibble', 'kohonen'

Packages suggested but not available for checking:
  'maptools', 'ncdf4', 'rgeos', 'udunits2', 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'glue', 'covr', 'testthat', 'spelling'
'LazyData' is specified without a 'data' directory
Running 'spelling.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'parmigene', 'GenKern', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'magrittr'

Packages suggested but not available for checking:
  'covr', 'haven', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'Rcpp', 'acs'

Packages suggested but not available for checking:
  'testthat', 'sp', 'knitr', 'rmarkdown', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'devtools', 'knitr', 'rmarkdown', 'zoo'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'stringdist'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'magrittr', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr', 'RColorBrewer', 'actuar', 'poisson',
  'ChainLadder'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'party', 'plyr', 'proto', 'polspline', 'randomForest',
  'ranger', 'classInt', 'mipfp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kernlab', 'optimx'

Packages suggested but not available for checking: 'rgenoud', 'LowRankQP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'magrittr', 'Rdpack'

Packages suggested but not available for checking:
  'synthpop', 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pracma'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'curl', 'jsonlite'
Packages required but not available:
  'signal', 'tframe', 'ggplot2', 'reshape2', 'polynom', 'bitops', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'unix', 'spelling', 'testthat'
'LazyData' is specified without a 'data' directory
Running 'spelling.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'car', 'lmtest', 'sandwich'

Packages suggested but not available for checking: 'plm', 'sem'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'cpp11'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lpSolve', 'Rcpp'

Packages suggested but not available for checking:
  'coda', 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'quantreg', 'xts'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'partitions'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'textshape', 'NLP', 'zoo', 'dtt', 'dplyr', 'tidyr', 'rlang'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'pander', 'readxl', 'rmarkdown', 'stringr',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'Rdimtools', 'ADMM', 'fda', 'ggplot2', 'lpSolve',
  'maotai', 'mclustcomp', 'rstiefel', 'scatterplot3d', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'lpSolve', 'RcppArmadillo'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'robustbase'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'openxlsx'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'colorRamps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'knitr', 'htmltools', 'yaml'

Packages suggested but not available for checking: 'MatchIt', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XLConnect'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'magrittr', 'R6', 'rlang', 'tidyselect'

Packages suggested but not available for checking:
  'knitr', 'rex', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glue', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'magrittr', 'dplyr',
  'tidyr', 'tibble', 'gt'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'htmltools', 'magrittr', 'shiny', 'jpeg', 'png', 'webshot'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'RColorBrewer'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'survey', 'e1071', 'zoo', 'gmodels', 'labelled'

Packages suggested but not available for checking:
  'testthat', 'Matching', 'reshape2', 'ggplot2', 'knitr', 'geepack',
  'lme4', 'lmerTest', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools', 'knitr'

Packages suggested but not available for checking:
  'shinyWidgets', 'shinyEffects', 'echarts4r'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'config', 'future', 'httr', 'iterators', 'jsonlite', 'jsonvalidate',
  'lubridate', 'purrr', 'R6', 'RCurl', 'rlist', 'stringr', 'urltools'

Packages suggested but not available for checking:
  'covr', 'foreach', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'tables'

Packages suggested but not available for checking:
  'xtable', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'knitr', 'htmltools'

Packages suggested but not available for checking:
  'magrittr', 'kableExtra', 'Hmisc', 'bookdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'rlang', 'tidyr', 'kableExtra'

Packages suggested but not available for checking:
  'knitr', 'magrittr', 'rmarkdown', 'yamlet', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'torch', 'hardhat', 'magrittr', 'glue', 'progress', 'rlang',
  'tibble', 'vctrs'

Packages suggested but not available for checking:
  'testthat', 'modeldata', 'recipes', 'parsnip', 'dials', 'withr',
  'knitr', 'rmarkdown', 'vip', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'knitr', 'gee', 'survey', 'xtable'

Package suggested but not available for checking: 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'tibble', 'dplyr', 'purrr', 'tidyr', 'crayon', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'kableExtra', 'gridExtra',
  'htmltools', 'fansi', 'tuneR', 'png'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'rlang', 'tibble', 'dplyr', 'tidyr', 'magrittr',
  'tidyselect', 'testthat', 'crayon', 'purrr', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'readr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'fasterize', 'magrittr', 'raster', 'silicate',
  'spatstat.geom', 'tibble'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggforce', 'ggplot2', 'purrr', 'rlang'

Packages suggested but not available for checking:
  'countrycode', 'zipangu', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'data.table', 'magrittr', 'purrr', 'rlang',
  'stringr', 'tibble', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'png', 'rJava', 'tabulizerjars'

Packages suggested but not available for checking:
  'knitr', 'miniUI', 'shiny', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'yaml'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'R.matlab'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gridExtra', 'latticeExtra', 'RColorBrewer'

Packages suggested but not available for checking:
  'covr', 'forecast', 'knitr', 'rmarkdown', 'testthat', 'zoo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'icesAdvice'
Packages required but not available: 'Rcpp', 'RColorBrewer'

Packages suggested but not available for checking: 'extrafont', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'DiceKriging', 'FastGP', 'mlegp', 'randtoolbox', 'foreach',
  'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'oompaBase', 'Biobase', 'oompaData'

Package suggested but not available for checking: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tidyverse', 'ggplot2', 'purrr',
  'shinydashboard'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'devEMF', 'segmented', 'sfsmisc', 'smoother', 'deSolve', 'pracma',
  'data.table', 'broom', 'colorRamps', 'minpack.lm', 'baseline'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'CDM', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'coda', 'GPArotation', 'lavaan', 'miceadds', 'mvtnorm', 'plyr',
  'psych', 'sfsmisc', 'sirt', 'WrightMap'

Package which this enhances but not available for checking: 'LSAmitR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'sf', 'isoband'

Packages suggested but not available for checking:
  'testthat', 'covr', 'lwgeom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'fdrtool'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glmnet'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'digest', 'sp'

Packages suggested but not available for checking:
  'rasterVis', 'rgdal', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jiebaR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'magrittr', 'knitr', 'stringi', 'stringr', 'base64enc',
  'digest', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'rms', 'rmarkdown', 'Hmisc', 'sandwich', 'dplyr',
  'Matching', 'epitools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'R.rsp'
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Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'fs', 'rlang', 'targets', 'tidyselect', 'vctrs', 'withr'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'rmarkdown', 'testthat', 'tibble', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lava', 'Rcpp', 'optimx', 'futile.logger', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'callr', 'cli', 'data.table', 'digest', 'igraph', 'R6', 'rlang',
  'tibble', 'tidyselect', 'vctrs', 'withr', 'yaml'

Packages suggested but not available for checking:
  'arrow', 'aws.s3', 'bs4Dash', 'clustermq', 'curl', 'dplyr', 'fst',
  'future', 'future.callr', 'gt', 'keras', 'knitr', 'markdown',
  'rmarkdown', 'pingr', 'pkgload', 'qs', 'rstudioapi', 'shiny',
  'shinybusy', 'shinyWidgets', 'testthat', 'torch', 'usethis',
  'visNetwork'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'leaflet', 'magrittr', 'httr', 'jsonlite', 'geojsonsf', 'sf',
  'tibble', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reshape2', 'plyr'

Packages suggested but not available for checking:
  'xtable', 'caTools', 'pspline', 'ggplot2', 'gdata', 'RSQLite',
  'data.table', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'igraph', 'tm', 'SnowballC', 'dplyr', 'wordcloud2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'lubridate', 'dplyr', 'randomForest', 'plyr', 'reshape2',
  'RColorBrewer', 'drat'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tashudata'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'miniUI', 'shiny', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'scales', 'RColorBrewer', 'shadowtext', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'magrittr', 'data.table', 'openxlsx', 'stringi',
  'colt', 'crayon', 'withr'

Packages suggested but not available for checking:
  'testthat', 'rprojroot', 'kableExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'RSEIS'
Packages unavailable to check Rd xrefs: 'RSEIS', 'GEOmap'
Package suggested but not available for checking: 'tm'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'magrittr', 'plyr', 'purrr', 'tibble'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'testthat', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'DBI', 'arkdb', 'tibble', 'memoise', 'readr', 'rappdirs',
  'rlang', 'magrittr', 'stringi', 'progress', 'dbplyr', 'RSQLite',
  'curl', 'jsonlite', 'duckdb', 'contentid'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'covr', 'knitr', 'rmarkdown', 'purrr',
  'crayon'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'thor', 'contentid'

Packages suggested but not available for checking:
  'jsonlite', 'spelling', 'testthat', 'covr', 'knitr', 'rmarkdown',
  'progress', 'utf8', 'crayon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'jsonlite', 'dplyr', 'lazyeval', 'magrittr', 'tibble', 'knitr',
  'rlang', 'stringr', 'crayon', 'tidyr', 'taxize'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'GA', 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'curl', 'DBI', 'RSQLite', 'dplyr', 'tibble', 'rlang', 'readr',
  'dbplyr', 'magrittr', 'hoardr'

Packages suggested but not available for checking: 'testthat', 'taxize'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crul', 'xml2', 'jsonlite', 'foreach', 'ape', 'zoo', 'data.table',
  'tibble', 'bold', 'rredlist', 'rotl', 'ritis', 'worrms', 'natserv',
  'wikitaxa', 'R6', 'crayon', 'cli', 'phangorn', 'conditionz'

Packages suggested but not available for checking:
  'testthat', 'vegan', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'taxa', 'taxize', 'stringdist', 'vegdata'

Packages suggested but not available for checking:
  'ape', 'knitr', 'testthat', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RSQLite', 'R.utils', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'taxize', 'wikitaxa', 'plyr', 'sqldf', 'stringr', 'stringdist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'sp'

Packages suggested but not available for checking:
  'GISTools', 'RColorBrewer', 'rgeos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
License components which are templates and need '+ file LICENSE':
  MIT
Package required but not available: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'signal', 'fdrtool'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'VGAM', 'stringr', 'plotrix'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/TBFmultinomial.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'zoo', 'dplyr', 'tibble', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'PerformanceAnalytics'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ranger', 'zoo', 'RcppRoll'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mlt', 'mboost', 'variables', 'basefun', 'sandwich', 'coneproj'

Packages suggested but not available for checking:
  'TH.data', 'tram', 'partykit', 'latticeExtra', 'knitr', 'colorspace',
  'gamlss.data', 'trtf'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/tbm_supplement.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'kernlab'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'Rdpack', 'TreeDist', 'TreeTools', 'BH', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'purrr', 'rlang', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'spelling', 'covr', 'ggalt', 'ggplot2', 'testthat', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'normalp', 'mcmc', 'R.utils', 'coda', 'Rsolnp', 'BMS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'config', 'data.table', 'futile.logger', 'gmodels', 'matrixcalc',
  'matrixStats', 'nloptr', 'pbapply', 'pracma', 'rsvd', 'quadprog'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'maxLik', 'Rdpack'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2', 'viridis',
  'future.apply', 'tictoc', 'censReg', 'truncreg', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'httr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'lme4', 'reshape2', 'GSA', 'multtest', 'cowplot',
  'gtools', 'stringr'

Packages suggested but not available for checking:
  'BiocManager', 'foreach', 'doParallel', 'tcgsaseq', 'knitr',
  'GEOquery', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CompQuadForm', 'ggplot2', 'GSA', 'pbapply', 'statmod'

Packages suggested but not available for checking:
  'limma', 'edgeR', 'DESeq2', 'S4Vectors', 'knitr', 'rmarkdown',
  'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'oro.dicom', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'truncnorm', 'mvtnorm', 'gridExtra', 'reshape'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'mrgsolve'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'eRm', 'numDeriv'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages suggested but not available for checking:
  'mclust', 'mvtnorm', 'sn'
Running examples in 'tclust-Ex.R' failed
The error most likely occurred in:

> ### Name: DiscrFact
> ### Title: Discriminant Factor Analysis for tclust Objects
> ### Aliases: DiscrFact print.DiscrFact
> ### Keywords: hplot cluster robust multivariate
> 
> ### ** Examples
> 
> sig <- diag (2)
> cen <- rep (1, 2)
> x <- rbind(mvtnorm::rmvnorm(360, cen * 0,   sig),
+ 	       mvtnorm::rmvnorm(540, cen * 5,   sig * 6 - 2),
+ 	       mvtnorm::rmvnorm(100, cen * 2.5, sig * 50)
+ )
Error in loadNamespace(x) : there is no package called 'mvtnorm'
Calls: rbind ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'ttclust.R'
Running the tests in 'tests/ttclust.R' failed.
Last 13 lines of output:
  Warning message:
  In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
    there is no package called 'mvtnorm'
  > #--- EXAMPLE 1 ------------------------------------------
  > 
  > set.seed(123)
  > sig <- diag (2)
  > cen <- rep (1,2)
  > x <- rbind(mvtnorm::rmvnorm(360, cen * 0,   sig),
  +             mvtnorm::rmvnorm(540, cen * 5,   sig * 6 - 2),
  +             mvtnorm::rmvnorm(100, cen * 2.5, sig * 50)
  +            )
  Error in loadNamespace(x) : there is no package called 'mvtnorm'
  Calls: rbind ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Errors in running code in vignettes:
when running code in 'tclust.rnw'
  ...
> plot(res.d, col = col, pch = pch, tol.lty = 2, xlab = "", 
+     ylab = "", main.pre = "(d)", main = "/r")

> par(op)

> library(mvtnorm)

  When sourcing 'tclust.R':
Error: there is no package called 'mvtnorm'
Execution halted

  'tclust.rnw'... failed
Error(s) in re-building vignettes:
  ...
--- re-building 'tclust.rnw' using Sweave
Warning in .tkmeans.warn(O, ret) :
  Less than 50% of the iterations (44%) converged - please increase iter.max.

Error: processing vignette 'tclust.rnw' failed with diagnostics:
 chunk 4 (label = chunk4) 
Error in library(mvtnorm) : there is no package called 'mvtnorm'

--- failed re-building 'tclust.rnw'

SUMMARY: processing the following file failed:
  'tclust.rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'Mcomp', 'forecast'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dplyr', 'xtable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'DBI', 'RMySQL', 'numDeriv', 'RColorBrewer', 'sqldf'

Packages suggested but not available for checking:
  'roxygen2', 'knitr', 'prettydoc', 'rmarkdown', 'htmlTable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'TDAstats', 'energy', 'ggplot2', 'maotai',
  'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'fastcluster', 'igraph'
cluster_cutoff_at_first_empty_bin: no visible global function
  definition for 'hist'
mapper1D: no visible global function definition for 'dist'
mapper1D: no visible global function definition for 'as.dist'
mapper1D: no visible global function definition for 'hclust'
mapper1D: no visible global function definition for 'cutree'
mapper2D: no visible global function definition for 'dist'
mapper2D: no visible global function definition for 'as.dist'
mapper2D: no visible global function definition for 'hclust'
mapper2D: no visible global function definition for 'cutree'
Undefined global functions or variables:
  as.dist cutree dist hclust hist
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "as.dist", "cutree", "dist", "hclust")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'FNN', 'Rcpp', 'igraph', 'scales', 'BH', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'lintr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'deSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'signal', 'RSEIS', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SPOT', 'twiddler', 'testit', 'adabag'

Packages suggested but not available for checking:
  'cmaes', 'e1071', 'ROCR', 'randomForest', 'rCMA', 'rSFA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RcppSimdJson'

Packages suggested but not available for checking: 'tinytest', 'xts'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'survivalROC'
Packages required but not available: 'ggplot2', 'RColorBrewer'

Package suggested but not available for checking: 'latticeExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
  'tuneR', 'alluvial', 'covr', 'testthat', 'devtools', 'GA',
  'sonicscrewdriver'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'actuar', 'markdown', 'knitr', 'data.table', 'Rcpp', 'rprojroot',
  'devtools', 'scales', 'yaml', 'magrittr', 'ggplot2', 'RcppNumerical',
  'miniUI', 'BH', 'RcppEigen'

Packages suggested but not available for checking:
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  'DiagrammeR', 'visNetwork', 'metricsgraphics', 'leaflet', 'shinyAce',
  'plotly', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'tkrplot', 'rgl', 'tcltk2', 'png', 'ggplot2', 'logspline',
  'maptools', 'R2wd', 'manipulate'
Packages required but not available: 'dplyr', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'units', 'checkmate', 'crayon', 'dplyr', 'furrr', 'future', 'glue',
  'magrittr', 'purrr', 'rlang', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tidyr', 'ggplot2', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'tibble', 'tidyr'

Packages suggested but not available for checking: 'Lahman', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'ggplot2', 'ks'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'R6'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'httr', 'jsonlite'

Package suggested but not available for checking: 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'mvtnorm', 'raster', 'scoringRules', 'stringr', 'foreach', 'ggplot2',
  'gtable', 'reshape2', 'scales', 'sp', 'Rcpp', 'RcppArmadillo',
  'RcppEigen'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'httr', 'jsonlite', 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'fs', 'gstat', 'lubridate', 'magrittr', 'purrr', 'raster',
  'Rcpp', 'rlang', 'sf', 'sp', 'stringr', 'sys', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
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  'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'ggplot2', 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > # These tests are more extensive and only need to run on travis, not on CRAN.
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'broom', 'dplyr', 'rootSolve', 'minpack.lm', 'AICcmodavg', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'dat', 'magrittr'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'plyr', 'reshape2', 'magrittr', 'scales',
  'plotly'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'JADE', 'fICA', 'Rcpp', 'tensor', 'tsBSS', 'ICtest', 'ggplot2',
  'RcppArmadillo'

Package suggested but not available for checking: 'stochvol'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'config', 'jsonlite', 'processx', 'reticulate', 'tfruns', 'yaml',
  'rstudioapi'

Packages suggested but not available for checking:
  'testthat', 'keras', 'tfestimators', 'callr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'rTensor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'speedglm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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undocumented value 'true' of field 'LazyDataCompression'
Packages required but not available:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'assertthat'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
TER.deesc.1.B : A1.f: no visible binding for '<<-' assignment to 'ID'
TER.deesc.1.B : A1.f: no visible binding for global variable 'ID'
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TER.deesc.1.B : A2.n.f: no visible binding for global variable 'ID'
TER.deesc.1.B: no visible binding for '<<-' assignment to 'ID'
TER.deesc.1.B: no visible binding for global variable 'ID'
TER.deesc.A.B : A1.f: no visible binding for '<<-' assignment to 'ID'
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TER.deesc.A.B : A3.f: no visible binding for '<<-' assignment to 'ID'
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TER.deesc.A.B : B1.f: no visible binding for '<<-' assignment to 'ID'
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TER.deesc.A.B: no visible binding for '<<-' assignment to 'ID'
TER.deesc.A.B: no visible binding for global variable 'ID'
Undefined global functions or variables:
  ID
Package required but not available: 'rainbow'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking: 'testthat', 'EpiModel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'statnet.common'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder packages required for checking but not installed:
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Files named as vignettes but with no recognized vignette engine:
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(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'viridisLite'

Packages suggested but not available for checking:
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  'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'maps', 'dichromat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'base64enc', 'httr', 'raster', 'magick', 'gdalUtils', 'png', 'sf',
  'units', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'covr', 'progressr', 'knitr', 'rmarkdown', 'progress',
  'jpeg', 'tiff', 'brio'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'raster'

Packages suggested but not available for checking: 'tinytest', 'ncdf4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'pdftools', 'curl', 'rappdirs', 'digest'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'coda', 'deSolve', 'Rcpp'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
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(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mfp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'scales', 'reshape2', 'forcats', 'knitr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mice', 'Amelia'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'lpSolve', 'foreach', 'logitnorm', 'crayon', 'RcppArmadillo'

Packages suggested but not available for checking:
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  'shiny', 'shinythemes', 'shinyWidgets', 'shinyjs', 'DT', 'knitr',
  'rmarkdown', 'kableExtra', 'testthat', 'pkgdown', 'pkgload'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caret', 'corrplot', 'cutpointr', 'dplyr', 'ggplot2', 'Morpho',
  'multcompView', 'tidyr', 'tmvtnorm', 'truncnorm'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'knitr', 'rmarkdown', 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Skipping vignette re-building
Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/tester_introduction.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/tester_introduction.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available: 'minerva', 'Hmisc', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running examples in 'TestFunctions-Ex.R' failed
The error most likely occurred in:

> ### Name: add_zoom
> ### Title: add_zoom: Zoom in on region of another function. Allows you to
> ###   easily change an existing function so that [0,1]^n refers to a
> ###   subregion of the original function
> ### Aliases: add_zoom
> 
> ### ** Examples
> 
> banana(c(.5,.85))
[1] 0.9692332
> add_zoom(banana, c(0,.5), c(1,1))(c(.5,.7))
[1] 0.9692332
> add_zoom(banana, c(.2,.5), c(.8,1))(matrix(c(.5,.7),ncol=2))
[1] 0.9692332
> ContourFunctions::cf(banana)
Error in loadNamespace(x) : there is no package called 'ContourFunctions'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available:
  'fda', 'ggplot2', 'rgl', 'knitr', 'rmarkdown', 'dplyr', 'ggpubr',
  'stringr', 'tidyr', 'pracma', 'utf8'

VignetteBuilder packages required for checking but not installed:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DoseFinding', 'alabama'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'rstudioapi', 'covr'
Packages required but not available:
  'brio', 'callr', 'cli', 'crayon', 'desc', 'digest', 'ellipsis',
  'evaluate', 'jsonlite', 'lifecycle', 'magrittr', 'pkgload', 'praise',
  'processx', 'ps', 'R6', 'rlang', 'waldo', 'withr'

Packages suggested but not available for checking:
  'covr', 'curl', 'diffviewer', 'knitr', 'mockery', 'rmarkdown',
  'rstudioapi', 'shiny', 'usethis', 'vctrs', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'devtools', 'fs', 'magrittr', 'pkgload', 'rprojroot',
  'stringi', 'testthat', 'usethis'

Packages suggested but not available for checking:
  'covr', 'crayon', 'knitr', 'rmarkdown', 'roxygen2', 'rstudioapi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'tidyr', 'FactoMineR', 'magrittr', 'tibble',
  'ggrepel', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'clisymbols', 'crayon', 'data.table', 'fastmatch', 'hunspell',
  'hutils', 'magrittr', 'rstudioapi', 'zoo'

Packages suggested but not available for checking:
  'devtools', 'readr', 'rlang', 'stringi', 'testthat', 'tinytex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'assertthat', 'stringr', 'jsonlite'

Packages suggested but not available for checking:
  'optparse', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'ggplot2', 'Rcpp'

Packages suggested but not available for checking:
  'gridExtra', 'knitr', 'rmarkdown', 'dplyr', 'tidyr', 'testthat',
  'devtools', 'ismev'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'prettyGraphs', 'ExPosition'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'base64enc', 'details', 'fs', 'htmltools', 'knitr', 'lifecycle',
  'magick', 'magrittr', 'rematch2', 'rstudioapi', 'svgPanZoom',
  'whisker', 'xml2'

Packages suggested but not available for checking:
  'covr', 'kableExtra', 'pdftools', 'rmarkdown', 'shiny', 'testthat',
  'texreg', 'xtable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

Packages suggested but not available for checking:
  'broom', 'coda', 'ggplot2', 'huxtable', 'knitr', 'rmarkdown',
  'sandwich', 'testthat', 'lmtest'

Packages which this enhances but not available for checking:
  'AER', 'alpaca', 'bife', 'biglm', 'brms', 'btergm', 'dynlm', 'feisr',
  'forecast', 'gamlss', 'gamlss.inf', 'glmmTMB', 'lfe', 'lme4',
  'miceadds', 'mlogit', 'mnlogit', 'MuMIn', 'ordinal', 'plm',
  'speedglm', 'VGAM', 'Zelig'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'aws.signature', 'dplyr', 'googleAuthR', 'googleLanguageR', 'httr',
  'mscstts', 'tuneR', 'magrittr', 'knitr'

Packages suggested but not available for checking:
  'aws.polly', 'covr', 'rmarkdown', 'testthat', 'stringi'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'R6', 'data.table', 'rsparse', 'stringi', 'mlapi', 'lgr',
  'digest'

Packages suggested but not available for checking:
  'magrittr', 'udpipe', 'glmnet', 'testthat', 'covr', 'knitr',
  'rmarkdown', 'proxy'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tau', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'english', 'glue', 'lexicon', 'mgsub', 'qdapRegex',
  'stringi', 'textshape'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fs', 'readr', 'tibble', 'rappdirs'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'rlang', 'text2vec', 'tfse', 'tibble', 'tokenizers'

Packages suggested but not available for checking:
  'knitr', 'roxygen2', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tidyr', 'tidytext', 'tm', 'wordcloud', 'dplyr', 'plyr', 'udpipe',
  'RColorBrewer', 'ggplot2', 'glmnet', 'pdftools', 'doParallel',
  'pracma', 'forcats'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'distrom', 'gamlr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gtools', 'magrittr', 'text2vec', 'stopwords', 'stringr', 'Rcpp',
  'RcppProgress', 'RSpectra', 'RcppArmadillo'

Packages suggested but not available for checking:
  'digest', 'dplyr', 'igraph', 'knitr', 'lda', 'rmarkdown',
  'SnowballC', 'stringi', 'testthat', 'tibble', 'tidyr', 'tidytext',
  'topicmodels', 'wordcloud'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'syuzhet', 'dplyr', 'tidyr', 'tidytext', 'tibble', 'tm', 'slam',
  'ggplot2', 'ggwordcloud', 'RColorBrewer'

Packages suggested but not available for checking:
  'tkrplot', 'SnowballC', 'readxl', 'jsonlite', 'ggrepel', 'ggpubr',
  'igraph', 'ggraph', 'ape', 'topicmodels', 'ca', 'corrr',
  'data.table', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
phyper_right: no visible global function definition for 'dhyper'
progression: no visible global function definition for 'density'
progression: no visible global function definition for 'points'
progression: no visible global function definition for 'legend'
progression: no visible global function definition for 'text'
specificities.distribution.plot: no visible global function definition
  for 'dhyper'
specificities.distribution.plot: no visible global function definition
  for 'Axis'
specificities.distribution.plot: no visible global function definition
  for 'arrows'
specificities.distribution.plot: no visible global function definition
  for 'text'
specificities.distribution.plot: no visible global function definition
  for 'title'
specificities.probabilities.vector: no visible global function
  definition for 'phyper'
Undefined global functions or variables:
  Axis arrows density dhyper legend phyper points text title
Consider adding
  importFrom("graphics", "Axis", "arrows", "legend", "points", "text",
             "title")
  importFrom("stats", "density", "dhyper", "phyper")
to your NAMESPACE file.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'knitr', 'udpipe', 'BTM', 'igraph', 'graph', 'Rgraphviz', 'qgraph',
  'glasso', 'ggplot2', 'ggraph', 'ggforce', 'concaveman'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/textplot-examples.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'igraph', 'digest'

Packages suggested but not available for checking:
  'textreuse', 'knitr', 'rmarkdown', 'udpipe'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tokenizers', 'tibble', 'stringr', 'tidyr', 'ggplot2',
  'ggrepel', 'cowplot', 'rlang', 'purrr', 'magrittr', 'parsnip',
  'recipes', 'rsample', 'reticulate', 'tune', 'workflows', 'yardstick',
  'future', 'furrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'rio', 'glmnet', 'randomForest',
  'covr', 'xml2', 'ranger'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'antiword', 'curl', 'data.table', 'pdftools', 'readxl', 'rvest',
  'striprtf', 'textshape', 'xml2'

Packages suggested but not available for checking: 'tesseract', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'recipes', 'dplyr', 'generics', 'magrittr', 'purrr', 'Rcpp', 'rlang',
  'SnowballC', 'stringr', 'tibble', 'tidyr', 'tokenizers', 'vctrs'

Packages suggested but not available for checking:
  'covr', 'janitor', 'knitr', 'modeldata', 'rmarkdown', 'spacyr',
  'stopwords', 'testthat', 'text2vec', 'textfeatures', 'stringi',
  'tokenizers.bpe', 'udpipe'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tm', 'NLP', 'Rcpp'

Packages suggested but not available for checking:
  'corrplot', 'knitr', 'SnowballC', 'xtable', 'testthat', 'plyr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'digest', 'dplyr', 'NLP', 'Rcpp', 'RcppProgress',
  'stringr', 'tibble', 'tidyr', 'BH'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'slam', 'stringi'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'systemfonts', 'cpp11'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'koRpus.lang.en', 'dplyr', 'hunspell', 'koRpus', 'lexicon',
  'quanteda', 'SnowballC', 'stringi', 'textclean', 'textshape'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'R6', 'data.table', 'RcppArmadillo', 'BH'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'tinytest'
Packages required but not available:
  'reticulate', 'tensorflow', 'rstudioapi', 'keras', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'numDeriv', 'zoo', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tensorflow', 'reticulate'

Packages suggested but not available for checking:
  'rlang', 'spelling', 'testthat', 'knitr', 'tfdatasets', 'magrittr',
  'rmarkdown', 'keras'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reticulate', 'tensorflow', 'magrittr', 'rlang', 'tidyselect',
  'generics', 'vctrs'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'keras', 'rsample', 'rmarkdown', 'Metrics',
  'dplyr', 'tfestimators'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httpuv', 'httr', 'jsonlite', 'magrittr', 'reticulate', 'swagger',
  'tensorflow'

Packages suggested but not available for checking:
  'cloudml', 'knitr', 'pixels', 'processx', 'testthat', 'yaml',
  'stringr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'forge', 'magrittr', 'progress', 'reticulate', 'rlang', 'tensorflow',
  'tfruns', 'tidyselect', 'purrr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'modelr', 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reticulate', 'tensorflow', 'magrittr', 'rstudioapi'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'tfestimators', 'keras', 'rmarkdown', 'callr',
  'recipes', 'tibble', 'abind', 'fs', 'pins', 'magick'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reticulate', 'tensorflow', 'tfdatasets', 'forge', 'magrittr'

Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sn', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tframe'

Package suggested but not available for checking: 'googleVis'

Package which this enhances but not available for checking: 'tframePlus'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tensorflow', 'reticulate', 'keras', 'magrittr'

Packages suggested but not available for checking:
  'tfdatasets', 'testthat', 'knitr', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tframe', 'timeSeries'

Packages suggested but not available for checking:
  'tfplot', 'zoo', 'xts', 'tis', 'WriteXLS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'base64enc', 'yaml', 'config', 'magrittr', 'whisker',
  'tidyselect', 'rlang', 'rstudioapi', 'reticulate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'withr', 'here', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'dapr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gsl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'maptree'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rjson', 'bnstruct', 'ggm', 'foreach', 'doParallel', 'minet'

Packages suggested but not available for checking:
  'R.rsp', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Namespace in Imports field not imported from: 'utils'
  All declared Imports should be used.
Packages required but not available: 'ggplot2', 'knitr'

Package suggested but not available for checking: 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'httr', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'dplyr', 'gdata', 'plyr'
Packages required but not available: 'smacof', 'proxy'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'askpass', 'httr', 'R6', 'raster', 'XML'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gdalcubes'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'farver', 'rlang', 'scales', 'rstudioapi', 'rappdirs', 'ggplot2'

Packages suggested but not available for checking:
  'withr', 'sysfonts', 'showtext', 'Cairo', 'systemfonts', 'ragg',
  'knitr', 'rmarkdown', 'htmltools', 'shiny', 'bslib', 'testthat',
  'gganimate', 'vdiffr', 'svglite', 'jsonlite', 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'lda', 'lme4', 'plotly', 'rstan', 'scales',
  'shiny', 'stm'

Packages suggested but not available for checking:
  'assertthat', 'covr', 'huge', 'igraph', 'inline', 'knitr',
  'networkD3', 'proxy', 'rmarkdown', 'RcppArmadillo', 'Rtsne',
  'testthat', 'vegan', 'viridis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'recipes', 'dplyr', 'generics', 'purrr', 'RANN', 'rlang', 'ROSE',
  'tibble', 'unbalanced', 'withr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'modeldata', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tiff', 'png'

Package suggested but not available for checking: 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'rcbalance', 'plyr', 'DiPs'

Package suggested but not available for checking: 'optmatch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'forecast', 'hts', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'RJSONIO'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'crayon', 'devtools', 'dplyr', 'ggplot2', 'lazyeval',
  'lubridate', 'magrittr', 'officer', 'purrr', 'readr', 'rvg',
  'stringi', 'stringr', 'tidyr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package which this enhances but not available for checking: 'testthat'
Package unavailable to check Rd xrefs: 'testthat'
'LazyData' is specified without a 'data' directory
Package required but not available: 'htmlwidgets'

Packages suggested but not available for checking: 'shiny', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'storr'

Packages suggested but not available for checking:
  'ids', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'mvtnorm'
coef_traceplot: no visible global function definition for 'rainbow'
coef_traceplot: no visible global function definition for 'abline'
coef_traceplot : <anonymous>: no visible global function definition for
  'lines'
coef_traceplot: no visible global function definition for 'text'
ee.GEE.aux : <anonymous>: no visible global function definition for
  'combn'
Undefined global functions or variables:
  abline combn lines rainbow text
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "abline", "lines", "text")
  importFrom("utils", "combn")
to your NAMESPACE file.
Running examples in 'threeboost-Ex.R' failed
The error most likely occurred in:

> ### Name: geeboost
> ### Title: GEEBoost
> ### Aliases: geeboost
> 
> ### ** Examples
> 
> # Generate some test data
> library(mvtnorm)
Error in library(mvtnorm) : there is no package called 'mvtnorm'
Execution halted
Packages required but not available:
  'dipsaus', 'xml2', 'shiny', 'digest', 'freesurferformats', 'crayon',
  'base64enc', 'htmltools', 'jsonlite', 'stringr', 'htmlwidgets', 'R6',
  'gifti', 'oro.nifti'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pryr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'htmlwidgets', 'base64enc', 'crosstalk'

Package suggested but not available for checking: 'maps'

Packages which this enhances but not available for checking:
  'knitr', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httr', 'readxl', 'readr', 'jsonlite', 'purrr', 'janitor',
  'tidyr', 'tidyselect', 'anytime', 'tibble', 'curl'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown', 'ggplot2', 'scales',
  'stringi', 'ggrepel', 'fixerapi'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tuneR', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ClassDiscovery', 'PCDimension', 'colorspace', 'movMF', 'ade4',
  'oompaBase'

Package suggested but not available for checking: 'NbClust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numDeriv', 'pROC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'revdbayes', 'rust'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'rly', 'stringi'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'lavaan', 'MplusAutomation', 'dplyr',
  'tibble', 'tidyr', 'magrittr', 'mvtnorm', 'rlang', 'knitr',
  'StanHeaders', 'BH', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ellipsis', 'fansi', 'lifecycle', 'magrittr', 'pillar', 'pkgconfig',
  'rlang', 'vctrs'

Packages suggested but not available for checking:
  'bench', 'bit64', 'blob', 'cli', 'covr', 'crayon', 'DiagrammeR',
  'dplyr', 'evaluate', 'formattable', 'ggplot2', 'hms', 'htmltools',
  'knitr', 'lubridate', 'mockr', 'nycflights13', 'purrr', 'rmarkdown',
  'testthat', 'tidyr', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'glue', 'hms', 'lubridate', 'purrr', 'Rcpp',
  'rlang', 'tibble', 'tidyselect', 'vctrs', 'zoo', 'lifecycle'

Packages suggested but not available for checking:
  'broom', 'covr', 'gapminder', 'knitr', 'rmarkdown', 'testthat',
  'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'rlang', 'vctrs', 'purrr', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
.LoadTickDataHK: no visible global function definition for 'read.csv'
.LoadTickDataSHSZ: no visible global function definition for 'read.csv'
DrawDown: no visible global function definition for 'na.omit'
PerformanceReport: no visible global function definition for
  'aggregate'
PerformanceReport: no visible global function definition for 'sd'
Undefined global functions or variables:
  aggregate na.omit read.csv sd
Consider adding
  importFrom("stats", "aggregate", "na.omit", "sd")
  importFrom("utils", "read.csv")
to your NAMESPACE file.
Package required but not available: 'hash'

Packages suggested but not available for checking:
  'testthat', 'combiter', 'dplyr', 'tidyr', 'reshape2', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Malformed Title field: should not end in a period.
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
newTiddler: no visible global function definition for 'new'
twImage: no visible global function definition for 'new'
twLink: no visible global function definition for 'new'
twList: no visible global function definition for 'new'
twTable: no visible global function definition for 'new'
Undefined global functions or variables:
  new
Consider adding
  importFrom("methods", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
'LazyData' is specified without a 'data' directory
Packages required but not available: 'chron', 'data.table', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'chron', 'data.table'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggdist', 'plyr', 'dplyr', 'tidyr', 'ggplot2', 'coda', 'purrr',
  'rlang', 'forcats', 'arrayhelpers', 'tidyselect', 'tibble',
  'magrittr'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'vdiffr', 'svglite', 'rstan', 'runjags',
  'rjags', 'jagsUI', 'rstanarm', 'emmeans', 'broom', 'dotwhisker',
  'MCMCglmm', 'bayesplot', 'modelr', 'brms', 'cowplot', 'covr',
  'gdtools', 'rmarkdown', 'ggrepel', 'bindrcpp', 'RColorBrewer',
  'gganimate', 'gifski', 'png', 'pkgdown', 'transformr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'readr', 'dplyr', 'ggplot2', 'scales'

Packages suggested but not available for checking: 'tidyverse', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BayesFactor', 'dplyr', 'effectsize', 'insight', 'ipmisc', 'metaBMA',
  'parameters', 'performance', 'rlang', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'modelr', 'purrr', 'rlang', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'tidyr', 'tibble', 'dplyr', 'stringr', 'forcats'

Packages suggested but not available for checking:
  'broom', 'ggplot2', 'ggforce', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'sf', 'dplyr', 'tigris', 'stringr', 'jsonlite', 'purrr',
  'rvest', 'tidyr', 'rappdirs', 'readr', 'xml2', 'units', 'rlang'

Packages suggested but not available for checking:
  'ggplot2', 'survey', 'srvyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'pryr', 'tibble', 'rlang', 'glue', 'matahari'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'dplyr', 'forcats', 'glue', 'magrittr', 'MBESS', 'purrr',
  'rlang', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat', 'tidyselect'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'Rcpp', 'knitr', 'rmarkdown', 'minidown', 'RcppSpdlog'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'jsonlite', 'yaml', 'dplyr', 'magrittr', 'visNetwork', 'htmlwidgets',
  'webshot'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'ggplot2', 'magrittr', 'purrr', 'tibble'

Packages suggested but not available for checking:
  'explore', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'Rcpp'

Packages suggested but not available for checking:
  'remotes', 'magrittr', 'tidyr', 'dplyr', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'fst', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'nycflights13', 'pryr', 'tidyr', 'ggplot2',
  'dplyr', 'bench', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'stringr', 'fst'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'profvis', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tidyr', 'readxl', 'data.table', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'rlang', 'purrr', 'tidyr', 'fuzzyjoin', 'IRanges', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'dplyr', 'httr', 'jsonlite', 'lifecycle'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'ggrepel', 'maps', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'httr', 'anytime', 'dplyr', 'tidyRSS', 'jsonlite', 'strex',
  'stringr', 'magrittr', 'purrr', 'sf', 'rlang'

Packages suggested but not available for checking:
  'httptest', 'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'dplyr', 'igraph', 'magrittr', 'rlang', 'R6', 'Rcpp',
  'tidyr', 'pillar'

Packages suggested but not available for checking:
  'network', 'data.tree', 'ape', 'graph', 'testthat', 'covr',
  'seriation', 'netrankr', 'influenceR', 'NetSwan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'tidyr', 'rlang', 'purrr', 'tibble',
  'ComplexHeatmap', 'viridis', 'circlize', 'RColorBrewer', 'lifecycle'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'vdiffr', 'BiocManager', 'knitr',
  'rmarkdown', 'qpdf', 'covr', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'crayon', 'DBI', 'dbplyr', 'dplyr', 'httr', 'lubridate',
  'rappdirs', 'readr', 'rlang', 'RSQLite', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'jsonlite', 'purrr', 'dplyr', 'magrittr', 'tidyr',
  'tibble', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'ggplot2', 'rmarkdown', 'forcats', 'wordcloud',
  'viridis', 'listviewer', 'igraph', 'RColorBrewer', 'covr', 'vctrs',
  'lubridate', 'rprojroot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'tidyr', 'glue', 'clisymbols'

Packages suggested but not available for checking:
  'testthat', 'covr', 'forcats', 'knitr', 'rmarkdown', 'bench'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'rlang'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'janeaustenr', 'knitr', 'rmarkdown', 'stringr',
  'testthat', 'tidytext'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'gtable', 'mclust', 'mix', 'MplusAutomation',
  'tibble'

Packages suggested but not available for checking:
  'knitr', 'lme4', 'missForest', 'pillar', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tidyverse', 'magrittr', 'ggrepel', 'VGAM', 'rlang', 'car', 'lme4',
  'vegan', 'cowplot', 'lsr', 'shapes', 'Evomorph', 'ThreeWay',
  'factoextra', 'ade4', 'scatterplot3d', 'gridExtra', 'plotly', 'png',
  'latex2exp', 'broom', 'plyr', 'dplyr', 'ggplot2', 'purrr', 'stringr',
  'tibble', 'tidyr', 'scales'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'roxygen2', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'cli', 'conflicted', 'dials', 'dplyr', 'ggplot2', 'infer',
  'modeldata', 'parsnip', 'purrr', 'recipes', 'rlang', 'rsample',
  'rstudioapi', 'tibble', 'tidyr', 'tune', 'workflows', 'workflowsets',
  'yardstick'

Packages suggested but not available for checking:
  'covr', 'glue', 'knitr', 'rmarkdown', 'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'HistDat', 'jsonlite', 'magrittr', 'purrr',
  'rlang', 'stringr', 'tibble'

Packages suggested but not available for checking:
  'tidyr', 'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'rlang', 'tibble', 'tidyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forcats', 'magrittr', 'ncdf4', 'ncmeta', 'purrr',
  'RNetCDF', 'rlang', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'testthat', 'covr', 'cubelyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forcats', 'janitor', 'lubridate', 'magrittr', 'purrr',
  'rlang', 'tibble', 'tidyr', 'vroom'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'tidyselect', 'dplyr', 'vctrs', 'tibble', 'scales',
  'ggplot2', 'styler', 'purrr', 'ggstance', 'stringr', 'withr',
  'tidyr', 'digest', 'rioja'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'vegan', 'patchwork', 'forcats',
  'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'tokenizers', 'stringr', 'tibble', 'dplyr', 'readr'

Packages suggested but not available for checking:
  'europepmc', 'tidytext', 'rmarkdown', 'knitr', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rsample', 'tidyr', 'dplyr', 'rstanarm', 'rlang', 'purrr', 'tibble',
  'generics', 'ggplot2', 'vctrs', 'tune', 'workflowsets'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'covr', 'parsnip', 'yardstick', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'rlang', 'purrr', 'knitr', 'generics', 'stringr', 'tibble',
  'tidyr'

Packages suggested but not available for checking:
  'dbplyr', 'testthat', 'randomForest', 'ranger', 'earth', 'rmarkdown',
  'nycflights13', 'RSQLite', 'DBI', 'covr', 'xgboost', 'Cubist',
  'mlbench', 'partykit', 'yaml', 'parsnip', 'modeldata'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lubridate', 'PerformanceAnalytics', 'quantmod', 'dplyr', 'ggplot2',
  'jsonlite', 'httr', 'curl', 'lazyeval', 'magrittr', 'purrr',
  'Quandl', 'riingo', 'readr', 'alphavantager', 'stringr', 'tibble',
  'tidyr', 'timetk', 'timeDate', 'TTR', 'xts', 'rlang', 'tidyselect',
  'rstudioapi', 'crayon', 'cli', 'janitor'

Packages suggested but not available for checking:
  'tidyverse', 'tibbletime', 'forcats', 'broom', 'knitr', 'rmarkdown',
  'testthat', 'scales', 'Rblpapi', 'readxl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'queryparser', 'rlang', 'stringr'

Packages suggested but not available for checking:
  'covr', 'DBI', 'dbplyr', 'dtplyr', 'nycflights13', 'RSQLite',
  'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'future', 'dplyr', 'httr', 'jsonlite', 'magrittr', 'xml2', 'stringr',
  'purrr', 'tidyr', 'labelled', 'furrr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'stringr', 'tibble', 'magrittr', 'dplyr', 'janitor',
  'tidyr', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'redcapAPI'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ellipsis', 'glue', 'lifecycle', 'magrittr', 'purrr',
  'rlang', 'tibble', 'tidyselect', 'vctrs', 'cpp11'

Packages suggested but not available for checking:
  'covr', 'data.table', 'jsonlite', 'knitr', 'readr', 'repurrrsive',
  'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'httr', 'magrittr', 'tibble', 'dplyr', 'jsonlite', 'purrr',
  'anytime', 'rlang', 'glue', 'vctrs', 'tidyselect'

Packages suggested but not available for checking:
  'httptest', 'knitr', 'rmarkdown', 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'stringr', 'magrittr', 'purrr', 'assertthat', 'partykit'

Packages suggested but not available for checking:
  'AmesHousing', 'dplyr', 'C50', 'Cubist', 'rpart.plot', 'modeldata',
  'testthat', 'mlbench', 'knitr', 'rmarkdown', 'pander'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ellipsis', 'glue', 'purrr', 'rlang', 'vctrs'

Packages suggested but not available for checking:
  'covr', 'crayon', 'dplyr', 'knitr', 'magrittr', 'rmarkdown',
  'testthat', 'tibble', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'lavaan', 'MplusAutomation', 'igraph', 'psych'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'dplyr', 'stringr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Seurat', 'tibble', 'dplyr', 'magrittr', 'tidyr', 'ggplot2', 'rlang',
  'purrr', 'lifecycle', 'plotly', 'tidyselect', 'ellipsis', 'pillar',
  'stringr', 'cli', 'fansi'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'GGally', 'markdown', 'SingleR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'purrr', 'stringr', 'readr', 'jsonlite', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'BayesFactor', 'lme4', 'lmerTest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'attempt', 'rlang', 'stringdist', 'tibble'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'magrittr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'tibble', 'dplyr', 'ggplot2', 'tidyr', 'forcats',
  'rlang', 'kernlab', 'LowRankQP', 'rgenoud', 'optimx'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'glue', 'lifecycle', 'magrittr', 'pillar', 'rlang',
  'tidyselect', 'vctrs'

Packages suggested but not available for checking:
  'testthat', 'bit64', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'tibble', 'dplyr', 'stringr', 'hunspell', 'generics',
  'lifecycle', 'tokenizers', 'janeaustenr', 'purrr', 'vctrs'

Packages suggested but not available for checking:
  'readr', 'tidyr', 'XML', 'tm', 'quanteda', 'knitr', 'rmarkdown',
  'ggplot2', 'reshape2', 'wordcloud', 'topicmodels', 'NLP', 'scales',
  'testthat', 'vdiffr', 'mallet', 'stm', 'data.table', 'broom',
  'textdata', 'stopwords', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'dplyr', 'forcats', 'purrr', 'stringr', 'tibble', 'tidyr',
  'tidyselect', 'extrafont', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'zip', 'tibble', 'readr', 'data.table', 'httr',
  'assertthat', 'rlang', 'sf', 'lubridate', 'hms', 'tidyr', 'digest',
  'checkmate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2', 'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'dplyr', 'lazyeval', 'magrittr', 'rlang', 'tibble'

Packages suggested but not available for checking:
  'ggtree', 'knitr', 'prettydoc', 'testthat', 'treeio'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readxl', 'rvest', 'lubridate', 'purrr', 'readr', 'rstudioapi',
  'xml2', 'httr', 'jsonlite', 'magrittr', 'usethis'

Packages suggested but not available for checking:
  'testthat', 'covr', 'pkgdown', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'curl', 'dplyr', 'fuzzyjoin', 'ggplot2', 'jsonlite',
  'keyring', 'magrittr', 'rgdal', 'sf', 'stringi', 'tigris', 'usethis',
  'httr', 'brio', 'waldo', 'diffobj', 'gitcreds'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rgeos', 'rmarkdown', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'cli', 'crayon', 'dbplyr', 'dplyr', 'dtplyr', 'forcats',
  'googledrive', 'googlesheets4', 'ggplot2', 'haven', 'hms', 'httr',
  'jsonlite', 'lubridate', 'magrittr', 'modelr', 'pillar', 'purrr',
  'readr', 'readxl', 'reprex', 'rlang', 'rstudioapi', 'rvest',
  'stringr', 'tibble', 'tidyr', 'xml2'

Packages suggested but not available for checking:
  'covr', 'feather', 'glue', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'magrittr', 'quantreg', 'rlang', 'classInt', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'shiny', 'remotes', 'vpc', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'tidyr', 'WikidataR', 'stringr', 'glue', 'DBI',
  'RSQLite', 'tibble', 'purrr', 'usethis', 'WikidataQueryServiceR',
  'fs', 'rlang'

Packages suggested but not available for checking:
  'spelling', 'roxygen2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'piton'

Packages suggested but not available for checking:
  'testthat', 'here', 'knitr', 'rmarkdown', 'readxl', 'dplyr', 'tidyr',
  'purrr', 'tibble', 'ggplot2', 'cellranger', 'openxlsx', 'rlang'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'openxlsx', 'zoo', 'Hmisc', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'e1071', 'hexbin', 'qualV', 'klaR', 'som'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abd', 'mosaic', 'mosaicData', 'ggplot2', 'manipulate', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'shiny', 'shinyjs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'alakazam', 'shazam', 'dplyr', 'doParallel', 'foreach',
  'gridExtra', 'gtools', 'iterators', 'lazyeval', 'rlang', 'stringi',
  'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'RSQLite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'magrittr', 'rgdal', 'sp', 'rappdirs', 'maptools', 'httr',
  'uuid', 'sf', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'ggthemes', 'leaflet', 'knitr', 'rgeos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'filehash', 'png'

Packages suggested but not available for checking:
  'evaluate', 'formatR', 'ggplot2', 'knitr', 'maps', 'scales',
  'stringr', 'testthat', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/tikzDevice.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'nanotime'

Packages suggested but not available for checking:
  'tinytest', 'rmarkdown', 'knitr', 'minidown', 'curl', 'bit64'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'sp'

Packages suggested but not available for checking:
  'dplyr', 'tidyr', 'knitr', 'rmarkdown', 'leaflet'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'APfun', 'raster', 'rgeos', 'sp', 'XML'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'clue', 'ggplot2', 'igraph', 'lwgeom', 'sf', 'smoothr'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'rmarkdown', 'spData'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'rgdal', 'raster', 'png'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'jpeg', 'bmp', 'leaflet'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'date', 'RUnit'
'LazyData' is specified without a 'data' directory
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Package suggested but not available for checking: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'dplyr', 'lubridate', 'stringr', 'futile.logger', 'ggplot2',
  'gtable', 'mtconnectR'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'lubridate', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lubridate'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'httr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lubridate', 'timeDate'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'ggplot2', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lava', 'numDeriv'

Package suggested but not available for checking: 'mets'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pec', 'mvtnorm'

Package suggested but not available for checking: 'timereg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'lubridate'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'boot' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'boot'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
boot_autocov: no visible global function definition for 'is.ts'
boot_autocov: no visible global function definition for 'tsboot'
boot_autocov: no visible global function definition for 'quantile'
boot_autocov: no visible global function definition for 'par'
boot_autocov: no visible global function definition for 'frequency'
boot_autocov: no visible global function definition for 'polygon'
boot_autocov: no visible global function definition for 'lines'
boot_autocov: no visible global function definition for 'abline'
boot_autocov: no visible global function definition for 'acf'
boot_spec: no visible global function definition for 'is.ts'
boot_spec: no visible global function definition for 'tsboot'
boot_spec: no visible global function definition for 'spec.pgram'
boot_spec: no visible global function definition for 'quantile'
boot_spec: no visible global function definition for 'polygon'
boot_spec: no visible global function definition for 'lines'
redraw: no visible global function definition for 'spec.pgram'
statistic: no visible global function definition for 'acf'
Undefined global functions or variables:
  abline acf frequency is.ts lines par polygon quantile spec.pgram
  tsboot
Consider adding
  importFrom("graphics", "abline", "lines", "par", "polygon")
  importFrom("stats", "acf", "frequency", "is.ts", "quantile",
             "spec.pgram")
to your NAMESPACE file.
Packages required but not available: 'gss', 'pheatmap', 'reshape'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RPostgreSQL', 'jsonlite', 'xts', 'zoo', 'xtable', 'shiny', 'DBI',
  'openxlsx', 'data.table'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'forecast', 'locfit', 'jsonlite', 'trend', 'tseries'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'timeDate'

Packages suggested but not available for checking:
  'RUnit', 'robustbase', 'xts', 'PerformanceAnalytics', 'fTrading'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'recipes', 'rsample', 'dplyr', 'ggplot2', 'forcats', 'stringr',
  'plotly', 'lubridate', 'padr', 'purrr', 'readr', 'stringi', 'tibble',
  'tidyr', 'xts', 'zoo', 'rlang', 'tidyselect', 'slider', 'anytime',
  'timeDate', 'forecast', 'hms', 'assertthat', 'generics'

Packages suggested but not available for checking:
  'tidyquant', 'tidymodels', 'modeltime', 'workflows', 'parsnip',
  'tune', 'yardstick', 'tidyverse', 'knitr', 'rmarkdown', 'robets',
  'broom', 'scales', 'testthat', 'fracdiff', 'timeSeries', 'tseries',
  'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'phangorn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'jsonlite', 'lubridate', 'magrittr',
  'rmarkdown', 'shiny'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'tibble', 'shinydisconnect'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'scriptests', 'Holidays'
Package unavailable to check Rd xrefs: 'Holidays'
Running examples in 'TimeWarp-Ex.R' failed
The error most likely occurred in:

> ### Name: TimeWarp-package
> ### Title: Date sequence and manipulation with business days and holidays.
> ### Aliases: TimeWarp-package TimeWarp
> ### Keywords: package
> 
> ### ** Examples
> 
> library(Holidays)
Error in library(Holidays) : there is no package called 'Holidays'
Execution halted
Packages required but not available:
  'Rcpp', 'QCA', 'reshape2', 'RcppArmadillo'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fields', 'deSolve', 'nnls', 'colorspace', 'minpack.lm', 'gclus',
  'gplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'Runuran'
Package unavailable to check Rd xrefs: 'Runuran'
Packages required but not available:
  'prettyGraphs', 'TExPosition', 'ExPosition', 'InPosition'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'rstudioapi'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'chk'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'knitr', 'rmarkdown'

Package suggested but not available for checking: 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'covr', 'vctrs', 'dplyr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'tinylabels-Ex.R' failed
The error most likely occurred in:

> ### Name: label_variable
> ### Title: Label Variables Using Pipes
> ### Aliases: label_variable label_variables
> 
> ### ** Examples
> 
>   library(dplyr)
Error in library(dplyr) : there is no package called 'dplyr'
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'brew', 'R.utils'

Packages suggested but not available for checking:
  'testthat', 'remotes', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'dplyr', 'ggplot2', 'gt', 'jsonlite', 'magrittr', 'purrr',
  'rlang', 'rvest', 'stringr', 'xml2', 'R.utils'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xfun'

Packages suggested but not available for checking: 'testit', 'rstudioapi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mclust', 'TeachingDemos', 'DescTools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'dplyr', 'magrittr', 'stringi', 'cpp11'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
tipom.car: no visible global function definition for 'abline'
tipom.car: no visible global function definition for 'axis'
tipom.heat: no visible global function definition for 'image'
tipom.heat: no visible global function definition for 'gray'
tipom.lw: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline axis gray image
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "abline", "axis", "image")
to your NAMESPACE file.
Packages required but not available:
  'htmlwidgets', 'htmltools', 'shiny', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glue', 'tibble', 'purrr'

Packages suggested but not available for checking:
  'testthat', 'broom', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'reshape', 'scales'

Packages which this enhances but not available for checking:
  'zoo', 'ggplot2'
Package unavailable to check Rd xrefs: 'ggplot2'
Packages required but not available:
  'dplyr', 'ggplot2', 'glue', 'cowplot', 'ggridges', 'purrr', 'tibble',
  'snow'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'dplyr'
Package required but not available: 'Iso'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ReDaMoR', 'magrittr', 'dplyr', 'DBI', 'RClickhouse', 'rlang',
  'tidyselect', 'visNetwork', 'getPass', 'shiny', 'shinydashboard',
  'DT', 'readr', 'jsonlite', 'jsonvalidate', 'base64enc', 'markdown',
  'promises', 'future'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'stringr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'JuliaCall', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'microbenchmark', 'deSolve'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'randomForest', 'HMM', 'signal', 'caret'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'mvtnorm', 'flexmix'
FLXmclust.Density: no visible global function definition for 'dmvnorm'
FLXmclust.Estimate: no visible global function definition for 'flexmix'
FLXmclust.Estimate: no visible global function definition for
  'FLXmclust'
coefmclust: no visible global function definition for 'parameters'
flexmix.Density: no visible global function definition for
  'model.matrix'
flexmix.Density: no visible global function definition for
  'model.response'
flexmix.Density: no visible global function definition for
  'model.frame'
flexmix.Density: no visible global function definition for 'dnorm'
flexmix.Density: no visible global function definition for 'dpois'
flexmix.Density: no visible global function definition for 'dbinom'
flexmix.Estimate: no visible global function definition for 'flexmix'
flexmix.Estimate: no visible global function definition for 'FLXglm'
tleplot,TLE-data.frame: no visible global function definition for
  'legend'
Undefined global functions or variables:
  FLXglm FLXmclust dbinom dmvnorm dnorm dpois flexmix legend
  model.frame model.matrix model.response parameters
Consider adding
  importFrom("graphics", "legend")
  importFrom("stats", "dbinom", "dnorm", "dpois", "model.frame",
             "model.matrix", "model.response")
to your NAMESPACE file.
Packages unavailable to check Rd xrefs: 'flexmix', 'modeltools'
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'hypergeo', 'ggplot2', 'lmomco'

Packages suggested but not available for checking:
  'evd', 'knitr', 'magrittr', 'lmom', 'Lmoments', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/tlm.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/tlm.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available: 'Rcpp', 'RcppEigen', 'BH'

Package suggested but not available for checking: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'blink', 'plyr', 'igraph', 'bit64'

Packages suggested but not available for checking:
  'knitr', 'ggplot2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tmaptools', 'sf', 'stars', 'units', 'RColorBrewer', 'viridisLite',
  'classInt', 'htmltools', 'htmlwidgets', 'widgetframe', 'leaflet',
  'leafsync', 'leafem', 'abind', 'rlang'

Packages suggested but not available for checking:
  'rmapshaper', 'rmarkdown', 'knitr', 'png', 'cartogram', 'osmdata',
  'ggplot2', 'dplyr', 'tidyr', 'shiny', 'testthat', 'covr', 'av',
  'gifski'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'lwgeom', 'stars', 'units', 'magrittr', 'RColorBrewer',
  'viridisLite', 'dichromat', 'XML'

Packages suggested but not available for checking:
  'tmap', 'rmapshaper', 'osmdata', 'OpenStreetMap', 'raster', 'png',
  'shiny', 'shinyjs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RcppEigen'

Package suggested but not available for checking: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rstan', 'TMB', 'Rcpp', 'StanHeaders', 'BH', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'tm'
Note: found 134043 marked UTF-8 strings
Packages required but not available: 'httr', 'jsonlite', 'stringi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'rappdirs', 'stringr', 'tibble'

Packages suggested but not available for checking:
  'curl', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tibble', 'rstudioapi', 'magrittr'

Packages suggested but not available for checking: 'ggplot2', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.utils', 'R.methodsS3', 'R.oo', 'geometry'

Packages suggested but not available for checking:
  'SuperLearner', 'e1071', 'randomForest', 'polspline', 'gam', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/tmle-npvi.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'SuperLearner'

Packages suggested but not available for checking: 'dbarts', 'gam', 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'beeswarm', 'tagcloud', 'XML', 'plotwidgets', 'RColorBrewer',
  'gplots', 'colorDF'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'pca3d', 'R.rsp', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'NLP', 'tm'

Package suggested but not available for checking: 'stringi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DSL', 'tm', 'NLP', 'slam'

Package suggested but not available for checking: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'NLP', 'tm', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'NLP', 'tm', 'xml2', 'rvest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'koRpus', 'sylly', 'tm', 'NLP'

Packages suggested but not available for checking:
  'koRpus.lang.en', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'NLP', 'tm', 'xml2', 'ISOcodes'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'NLP', 'tm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'NLP', 'tm', 'boilerpipeR', 'RCurl', 'XML', 'RJSONIO'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'NLP', 'Rcpp', 'slam', 'xml2', 'BH'

Packages suggested but not available for checking:
  'antiword', 'filehash', 'pdftools', 'Rcampdf', 'Rgraphviz',
  'Rpoppler', 'SnowballC', 'testthat', 'tm.lexicon.GeneralInquirer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

Packages suggested but not available for checking:
  'roxygen2', 'eRm', 'knitr', 'prettydoc', 'psychotools', 'testthat',
  'rmarkdown', 'dexterMST'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages required but not available: 'mvtnorm', 'gmm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'igraph', 'testthat'
'LazyData' is specified without a 'data' directory
Running examples in 'TNC-Ex.R' failed
The error most likely occurred in:

> ### Name: tbc
> ### Title: Temporal betweenness centrality
> ### Aliases: tbc
> 
> ### ** Examples
> 
> # Create a list of adjacency matrices, plot the corresponding graphs
> # (using the igraph package) and calculate tbc
> 
> A1 <- matrix(c(0,1,0,0,0,0,
+                1,0,1,0,0,0,
+                0,1,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0), ncol=6)
> 
> A2 <- matrix(c(0,0,0,0,0,0,
+                0,0,1,0,0,0,
+                0,1,0,1,1,0,
+                0,0,1,0,0,0,
+                0,0,1,0,0,0,
+                0,0,0,0,0,0), ncol=6)
> 
> A3 <- matrix(c(0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0), ncol=6)
> 
> A4 <- matrix(c(0,1,0,0,0,0,
+                1,0,0,1,0,0,
+                0,0,0,0,0,0,
+                0,1,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0), ncol=6)
> 
> library(igraph)
Error in library(igraph) : there is no package called 'igraph'
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'RCurl', 'rjson'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'bit', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'rex', 'rstudioapi'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'getPass', 'glue', 'httr', 'jsonlite',
  'keyring', 'lubridate', 'magrittr', 'prettyunits', 'purrr',
  'rstudioapi', 'parsedate'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'nloptr', 'Rmpfr', 'EQL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'stringi'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringi', 'Rcpp', 'SnowballC'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'stopwords', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'sf', 'geojsonsf', 'lwgeom', 'tibble', 'rlang',
  'purrr', 'stringr', 'readr', 'lifecycle'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'RColorBrewer', 'ggplot2', 'cancensus',
  'tidycensus', 'spelling', 'readxl', 'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'dplyr', 'reshape2', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BiasedUrn', 'dplyr', 'glmnet', 'latticeExtra', 'lhs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'calibrate', 'robCompositions'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'imager', 'ggplot2', 'cowplot', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'crayon', 'testthat'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'topicmodels'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'modeltools', 'slam', 'tm'

Packages suggested but not available for checking:
  'lasso2', 'lda', 'OAIHarvester', 'SnowballC', 'corpus.JSS.papers'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RSpectra', 'combinat', 'quadprog', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Hmisc', 'gplots'

Packages suggested but not available for checking:
  'knitr', 'RGtk2', 'gWidgets2', 'gWidgets2RGtk2'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/TopKLists.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'gdistance', 'plotly', 'raster', 'RColorBrewer', 'scales',
  'sp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'graph', 'gRbase', 'qpgraph', 'fields'

Package suggested but not available for checking: 'Rgraphviz'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'torch', 'fs', 'rlang', 'rappdirs', 'glue'

Packages suggested but not available for checking:
  'testthat', 'monitoR', 'tuneR', 'knitr', 'rmarkdown', 'stringr',
  'numbers', 'purrr', 'scales', 'httr', 'viridis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'torch', 'fs', 'zip', 'pins', 'torchvision', 'stringr'

Packages suggested but not available for checking: 'testthat', 'readr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'R6', 'withr', 'rlang', 'bit64', 'magrittr', 'coro', 'callr',
  'cli'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'glue', 'palmerpenguins'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'torch', 'fs', 'rlang', 'rappdirs', 'jpeg', 'png', 'abind'

Packages suggested but not available for checking: 'testthat', 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fs', 'readr', 'rlang', 'tibble'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tm', 'lda', 'quanteda', 'lubridate', 'htmltools', 'RColorBrewer',
  'stringr', 'WikipediR', 'data.table'

Packages suggested but not available for checking:
  'toscaData', 'testthat', 'knitr', 'devtools', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jmvcore', 'ggplot2', 'R6'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'data.table', 'magrittr', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggmap', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'TreeTools'

Packages suggested but not available for checking:
  'ape', 'fansi', 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nleqslv', 'numDeriv', 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'engsoccerdata'
'LazyData' is specified without a 'data' directory
Running examples in 'TouRnament-Ex.R' failed
The error most likely occurred in:

> ### Name: leaguetable
> ### Title: Create a league table
> ### Aliases: leaguetable
> 
> ### ** Examples
> 
> #league table for La Liga 94/95 with three point rewards (instead of two) and home and away results
> require(engsoccerdata)
Loading required package: engsoccerdata
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'engsoccerdata'
> leaguetable(dataset=engsoccerdata::spain[which(engsoccerdata::spain$Season==1994),],
+ home="home", away="visitor",score_home="hgoal", score_away="vgoal", date="Date",
+ points = c(3,1,0), rank_by = c("Pts_DC","GD_DC","GF_DC","GD","GF"), DC_display = TRUE)
Error in loadNamespace(x) : there is no package called 'engsoccerdata'
Calls: leaguetable ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available: 'tibble', 'dplyr'

Packages suggested but not available for checking:
  'TeachingDemos', 'ash', 'energy', 'testthat', 'colorspace',
  'ggplot2', 'gifski', 'geozoo', 'knitr', 'rmarkdown', 'tidyr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'DT', 'leaflet', 'ggplot2', 'magrittr', 'shiny',
  'shinydashboard', 'RColorBrewer', 'readxl', 'shinyAce',
  'shinycssloaders'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'knitr', 'here', 'tcpl', 'openxlsx', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ConfA: no visible global function definition for 'qf'
EstM2Sn: no visible global function definition for 'nlm'
EstM2Sn: no visible global function definition for 'qnorm'
TV.model: no visible global function definition for 'dev.new'
TV.model: no visible global function definition for 'points'
betaBino: no visible global function definition for 'pbinom'
doseD: no visible global function definition for 'lm'
doseD: no visible global function definition for 'dev.new'
doseD: no visible global function definition for 'par'
doseD: no visible global function definition for 'axTicks'
doseD: no visible global function definition for 'axis'
doseD: no visible global function definition for 'lines'
doseD: no visible global function definition for 'abline'
doseD: no visible global function definition for 'legend'
setD: no visible global function definition for 'dev.new'
setD: no visible global function definition for 'par'
setD: no visible global function definition for 'pbinom'
setD: no visible global function definition for 'abline'
setD: no visible global function definition for 'axis'
setD: no visible global function definition for 'rect'
setD: no visible global function definition for 'lines'
setD: no visible global function definition for 'text'
setD: no visible global function definition for 'axTicks'
setD: no visible global function definition for 'legend'
spoD : spoD_A: no visible global function definition for 'chisq.test'
Undefined global functions or variables:
  abline axTicks axis chisq.test dev.new legend lines lm nlm par pbinom
  points qf qnorm rect text
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "abline", "axTicks", "axis", "legend", "lines",
             "par", "points", "rect", "text")
  importFrom("stats", "chisq.test", "lm", "nlm", "pbinom", "qf", "qnorm")
to your NAMESPACE file.
Package required but not available: 'pROC'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ks', 'gridExtra', 'mvtnorm'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'MESS', 'foreach', 'XML', 'RCurl', 'igraph'

Packages suggested but not available for checking: 'geeM', 'geepack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
License components which are templates and need '+ file LICENSE':
  MIT
align1d : obj: no visible global function definition for 'dist'
align2d : obj: no visible global function definition for 'dist'
align2d : pen: no visible global function definition for 'dist'
align2d: no visible global function definition for 'dist'
sumt: no visible global function definition for 'optim'
tpe1d: no visible global function definition for 'hclust'
tpe2d: no visible global function definition for 'hclust'
tpe2d: no visible global function definition for 'cmdscale'
Undefined global functions or variables:
  cmdscale dist hclust optim
Consider adding
  importFrom("stats", "cmdscale", "dist", "hclust", "optim")
to your NAMESPACE file.
Package required but not available: 'plotly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'assertthat', 'magrittr', 'dplyr', 'purrr', 'stringr',
  'tidyr', 'tidyselect', 'tibble', 'lifecycle', 'forcats'

Packages suggested but not available for checking:
  'testthat', 'haven', 'knitr', 'rmarkdown', 'huxtable', 'tidyverse',
  'readr', 'kableExtra', 'pharmaRTF'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages which this enhances but not available for checking:
  'p3state.msm', 'etm'
Package required but not available: 'lgtdl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RCurl', 'XML', 'dplyr', 'plyr', 'reshape', 'rappdirs', 'readxl',
  'shiny', 'taxize'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'Rcpp', 'testit'

Packages suggested but not available for checking:
  'ape', 'ggplot2', 'hunspell', 'knitr', 'phangorn', 'rbenchmark',
  'reshape2', 'rmarkdown', 'spelling', 'stringr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'clisymbols', 'crayon', 'prettycode'

Packages suggested but not available for checking:
  'covr', 'mockery', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tgram'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'png', 'neuralnet', 'raster', 'Rcpp', 'shiny', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'data.table', 'sp', 'lubridate'

Packages suggested but not available for checking:
  'readr', 'dplyr', 'ggplot2', 'knitr', 'rmarkdown', 'adehabitatLT',
  'move', 'moveVis', 'ctmm', 'moveHMM', 'mapproj'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'trackeR', 'colorspace', 'zoo', 'foreach', 'plotly', 'DT',
  'changepoint', 'shiny', 'shinyjs', 'shinydashboard', 'shinyWidgets',
  'sf', 'mapdeck', 'V8'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'zoo', 'ggplot2', 'ggridges', 'xml2', 'RSQLite', 'jsonlite',
  'raster', 'scam', 'foreach', 'fda', 'sp', 'leaflet', 'ggmap',
  'gridExtra', 'gtable'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'scriptests'
Packages unavailable to check Rd xrefs: 'g.data', 'filehash'
Packages required but not available: 'fields', 'RColorBrewer'

Packages suggested but not available for checking:
  'onion', 'plotrix', 'rgl', 'scatterplot3d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'histry', 'fastdigest', 'ggplot2', 'gridGraphics', 'CodeDepends',
  'RJSONIO', 'rsolr', 'htmltools', 'miniUI', 'shiny', 'rmarkdown',
  'roprov', 'rlang'

Packages suggested but not available for checking:
  'proto', 'png', 'httr', 'knitr', 'MEMSS', 'mlmRev', 'dplyr',
  'gridExtra', 'rstudioapi', 'switchr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/Extending-trackr.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'EBImage', 'data.table', 'dplyr', 'Momocs', 'raster', 'zoo', 'plyr',
  'pastecs', 'features', 'jpeg', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'animation'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ore', 'reportr', 'shades', 'RNifti'

Packages suggested but not available for checking:
  'mmand', 'loder', 'divest', 'jsonlite', 'yaml', 'testthat'

Package which this enhances but not available for checking: 'oro.nifti'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'antitrust'

Packages suggested but not available for checking: 'bookdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reticulate', 'PerformanceAnalytics'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caret', 'data.table', 'dplyr', 'lubridate', 'neuralnet', 'RCurl',
  'zoo'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'FNN', 'moments', 'pryr', 'lmtest'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'neuralnet', 'xgboost', 'randomForest', 'e1071', 'kknn', 'dplyr',
  'ada', 'dummies', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rpart.plot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RCurl', 'dplyr', 'glue', 'lubridate', 'magrittr', 'purrr',
  'stringr', 'tibble', 'tidyr', 'usethis', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'geodist', 'geosphere'

Packages suggested but not available for checking:
  'covr', 'testthat', 'dplyr', 'tibble', 'tidyr', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'reshape2', 'taxize', 'getPass', 'units', 'XML',
  'RCurl', 'plyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'httr', 'crul', 'tibble', 'data.table', 'readr',
  'taxize', 'xml2', 'rvest', 'hoardr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dplyr', 'plyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlist', 'gridExtra', 'qpdf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'trajectories', 'xts', 'spacetime', 'RPostgreSQL', 'geosphere',
  'rgdal'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'ggplot2', 'rgeos',
  'magrittr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'spacetime', 'zoo'

Packages suggested but not available for checking:
  'rgdal', 'rgeos', 'OpenStreetMap', 'RCurl', 'rjson', 'adehabitatLT',
  'xts', 'knitr', 'rgl', 'forecast', 'spatstat', 'spatstat.core',
  'spatstat.geom', 'taxidata'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'psych', 'pastecs', 'NbClust', 'GPArotation'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'signal', 'plotrix'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'BH', 'readr', 'sp'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'TraMineR', 'gtools', 'RColorBrewer', 'colorspace', 'doParallel',
  'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RColorBrewer', 'Hmisc', 'colorspace'

Packages suggested but not available for checking:
  'xtable', 'TraMineRextras'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tram', 'mlt', 'alabama', 'lme4', 'TMB', 'variables', 'basefun',
  'mvtnorm', 'numDeriv', 'coneproj', 'RcppEigen'

Packages suggested but not available for checking:
  'multcomp', 'knitr', 'coxme', 'ordinal', 'ordinalCont', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/tramME.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tram', 'CVXR', 'mlrMBO', 'mlt', 'basefun', 'sandwich',
  'ParamHelpers', 'lhs', 'mlr', 'smoof'

Packages suggested but not available for checking:
  'penalized', 'TH.data', 'knitr', 'mlbench', 'colorspace', 'mvtnorm',
  'glmnet', 'trtf', 'lasso2', 'kableExtra', 'coin', 'tbm',
  'DiceKriging'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/tramnet.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mlt', 'Formula', 'multcomp', 'variables', 'basefun', 'sandwich'

Packages suggested but not available for checking:
  'TH.data', 'trtf', 'mlbench', 'knitr', 'quantreg', 'colorspace',
  'ATR', 'lme4', 'merDeriv', 'SparseGrid', 'alabama', 'numDeriv',
  'gridExtra', 'latticeExtra', 'HSAUR3', 'mvtnorm', 'ordinalCont',
  'coxme', 'glmmsr', 'mlt.docreg', 'ordinal', 'coin', 'asht'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/mtram.Rnw'
   'inst/doc/tram.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'tweenr', 'rlang', 'sf', 'lpSolve'

Package suggested but not available for checking: 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RCurl', 'RJSONIO', 'functional', 'lisp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RJSONIO', 'RCurl', 'textcat', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
BugReports field is not a suitable URL but appears to contain an email address
  not specified by mailto: nor contained in < >
   use the Contact field instead
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'cmna', 'ggformula', 'ggplot2', 'plot3D'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'ape'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'purrr', 'coda', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'dplyr', 'stringr', 'knitr', 'rmarkdown', 'testthat', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'transplantr-Ex.R' failed
The error most likely occurred in:

> ### Name: chi2dob
> ### Title: Convert CHI number to date of birth
> ### Aliases: chi2dob
> 
> ### ** Examples
> 
> # as a single numeric
> chi2dob(1503541234)
Error: The stringr package is needed for this function to work. Please install it.
Execution halted
Running 'spelling.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'data.table', 'RcppEigen'

Packages suggested but not available for checking:
  'animation', 'ks', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rootSolve', 'truncSP', 'SQUAREM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rlang'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'cli', 'testthat', 'knitr', 'DescTools',
  'outliers', 'rmarkdown', 'mFilter', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'ggplot2', 'plyr'
rtrapezoid: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
Errors in running code in vignettes:
when running code in 'trapezoid.Rnw'
  ...

> density <- dtrapezoid(x, min = 0, mode1 = 1/3, mode2 = 2/3, 
+     max = 1, n1 = 2, n3 = 2, alpha = 1)

> trapezoid <- ggplot(data = data.frame(x, density), 
+     aes(x = x, y = density)) + geom_line() + theme_bw()

  When sourcing 'trapezoid.R':
Error: could not find function "ggplot"
Execution halted

  'trapezoid.Rnw'... failed
Error(s) in re-building vignettes:
  ...
--- re-building 'trapezoid.Rnw' using Sweave
Loading required package: trapezoid
Loading required package: plyr
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'plyr'
Loading required package: ggplot2
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'ggplot2'

Error: processing vignette 'trapezoid.Rnw' failed with diagnostics:
 chunk 2 (label = trapezoid) 
Error in ggplot(data = data.frame(x, density), aes(x = x, y = density)) : 
  could not find function "ggplot"

--- failed re-building 'trapezoid.Rnw'

SUMMARY: processing the following file failed:
  'trapezoid.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'DEoptim', 'ggplot2', 'ggpubr', 'rootSolve', 'Runuran', 'squash',
  'TSA'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantmod', 'zoo', 'dplyr', 'xts', 'lubridate'

Packages suggested but not available for checking:
  'PerformanceAnalytics', 'tidyr', 'ggplot2', 'dataseries', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'binom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'XML', 'RCurl', 'httr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'runjags', 'coda', 'rjags', 'hypergeo', 'logspline',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'abind', 'plyr', 'ggplot2', 'lmtest', 'lmodel2', 'np',
  'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

Packages suggested but not available for checking: 'ggplot2', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sparseLDA', 'mvtnorm', 'reshape2', 'gtable', 'phyloseq', 'ggplot2'

Packages suggested but not available for checking:
  'adaptiveGPCA', 'knitr', 'testthat', 'ape'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lazyeval', 'ape', 'geiger', 'data.table'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'limSolve'

Packages suggested but not available for checking:
  'lubridate', 'ggplot2', 'foreach', 'iterators', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lubridate', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ape', 'cowplot', 'tree', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'colorspace', 'memoise', 'phangorn', 'Rdpack', 'shiny',
  'shinyjs', 'TreeTools', 'Rcpp'

Packages suggested but not available for checking:
  'bookdown', 'kdensity', 'knitr', 'protoclust', 'Quartet', 'readxl',
  'rmarkdown', 'Rcpp', 'rgl', 'testthat', 'Ternary', 'TreeDistData',
  'TreeSearch', 'vdiffr', 'viridisLite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'Rcpp', 'apTreeshape', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggparty', 'ggplot2', 'partykit', 'dplyr', 'ggnewscale', 'gtable',
  'tidyr', 'yardstick', 'seriation'

Packages suggested but not available for checking:
  'forcats', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'randomForest', 'ranger', 'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Build_JTree: no visible global function definition for 'flush.console'
Run_JTree: no visible global function definition for 'cov2cor'
Undefined global functions or variables:
  cov2cor flush.console
Consider adding
  importFrom("stats", "cov2cor")
  importFrom("utils", "flush.console")
to your NAMESPACE file.
Packages required but not available:
  'plyr', 'ape', 'RJSONIO', 'stringr', 'bigmemory'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'ggfittext'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'vdiffr', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'colorspace', 'data.table', 'ggplot2', 'gridBase', 'igraph',
  'RColorBrewer', 'shiny'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ape', 'RcppArmadillo', 'RcppThread'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'subplex', 'TreeSim', 'deSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
plot.treeperm: no visible global function definition for 'hist'
plot.treeperm: no visible global function definition for 'points'
plot.treeperm: no visible global function definition for 'text'
treeperm.formula: no visible global function definition for
  'model.frame'
treeperm.formula: no visible global function definition for
  'model.response'
Undefined global functions or variables:
  hist model.frame model.response points text
Consider adding
  importFrom("graphics", "hist", "points", "text")
  importFrom("stats", "model.frame", "model.response")
to your NAMESPACE file.
Packages required but not available:
  'ape', 'dplyr', 'Rcpp', 'lazyeval', 'phytools', 'geiger'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'phangorn', 'R.cache', 'Rdpack', 'TreeTools'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shiny', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'TreeSim', 'ape'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'geiger'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'ade4', 'adegenet', 'adegraphics', 'adephylo', 'combinat',
  'distory', 'fields', 'htmlwidgets', 'phangorn', 'phytools', 'Rcpp',
  'rgl', 'RLumShiny', 'scatterD3', 'shiny', 'shinyBS'

Packages suggested but not available for checking:
  'ggplot2', 'igraph', 'knitr', 'pander', 'RColorBrewer', 'reshape2',
  'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'phytools', 'ape'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'Rcpp'

Packages suggested but not available for checking:
  'ggtree', 'ggplot2', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'bit64', 'colorspace', 'phangorn', 'R.cache', 'Rdpack', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'Rcpp', 'rmarkdown', 'shiny', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'RColorBrewer', 'spatstat.geom', 'spatstat.core', 'raster',
  'rasterVis', 'sp', 'geometry', 'maptools', 'rgdal', 'rgl', 'lidR',
  'pryr', 'sf', 'stars', 'rglwidget'

Package suggested but not available for checking: 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'purrr', 'htmltools', 'DistributionUtils', 'gtable',
  'digest', 'jsonlite', 'ggplot2', 'base64enc', 'htmlwidgets',
  'progress', 'knitr', 'webshot', 'autocogs', 'tidyr', 'rlang'

Packages suggested but not available for checking:
  'plotly', 'testthat', 'covr', 'gapminder', 'rmarkdown', 'shiny',
  'housingData'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tibble', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'trending', 'yardstick', 'rsample', 'ellipsis', 'tidyr', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'outbreaks'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tibble', 'vctrs', 'ciTools'

Packages suggested but not available for checking:
  'brms', 'covr', 'ggplot2', 'knitr', 'outbreaks', 'patchwork',
  'rmarkdown', 'dplyr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pROC', 'rms', 'nleqslv', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'extraDistr'

Packages suggested but not available for checking:
  'strucchange', 'Kendall', 'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'changepoint', 'forecast', 'plyr', 'Rssa', 'tseries', 'zoo',
  'imputeTS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'usethis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gtrendsR', 'magrittr', 'dplyr', 'purrr', 'crayon', 'stringr',
  'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ManifoldOptim', 'pracma', 'rTensor'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'chron', 'zoo', 'solaR', 'lubridate', 'lhs', 'doParallel', 'foreach',
  'tibble', 'dplyr', 'sensitivity', 'randtoolbox', 'doSNOW', 'msm',
  'magrittr'

Packages suggested but not available for checking: 'shiny', 'plotly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'snpStats', 'foreach', 'doParallel'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'rlang', 'dplyr', 'purrr', 'magrittr',
  'stringr', 'ggplot2', 'gtools', 'coda', 'tidybayes', 'tibble',
  'binom', 'StanHeaders', 'BH', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tidyr', 'ggridges', 'DiagrammeR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'rlang', 'vctrs', 'dqrng'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'lazyeval', 'magrittr', 'rlang', 'rstudioapi'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggtern', 'shiny', 'assertthat'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'sf', 'leaflet', 'httpuv', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'scales', 'reshape2', 'ez', 'psych', 'PSAgraphics',
  'gridExtra', 'randomForest'

Package suggested but not available for checking: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'fpc'
Package unavailable to check Rd xrefs: 'fpc'
Packages required but not available: 'data.table', 'crayon', 'cli', 'pryr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'randomForest', 'mlbench'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'rgl', 'gridExtra'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'reshape'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'msm', 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'akima'
Packages required but not available: 'rgdal', 'sp', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape2', 'plyr'

Package suggested but not available for checking: 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'DALEX', 'glmnet', 'ggdendro', 'patchwork'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'randomForest', 'mlbench', 'ranger', 'gbm',
  'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geodist', 'raster', 'reproj', 'sp', 'spatstat.geom',
  'spatstat.core', 'glue', 'viridis', 'traipse', 'crsmeta', 'dplyr',
  'rlang'

Packages suggested but not available for checking:
  'adehabitatLT', 'knitr', 'testthat', 'covr', 'rmarkdown',
  'lubridate', 'maps', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'data.tree'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'limSolve', 'generics'

Packages suggested but not available for checking:
  'magrittr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'tibble', 'countrycode', 'tidyr', 'stringr',
  'readstata13', 'rlang', 'haven'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'msm', 'reshape2', 'GenSA', 'GA', 'propagate', 'doParallel', 'Hmisc'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'plyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'data.table', 'ggplot2', 'gridExtra', 'hdrcde', 'MCMCglmm',
  'plyr', 'rjags'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Packages required but not available:
  'mlt', 'partykit', 'Formula', 'sandwich', 'variables', 'libcoin'

Packages suggested but not available for checking: 'TH.data', 'coin'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'hdrcde'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'purrr', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
DrawMargin: no visible global function definition for 'qnorm'
DrawProbability: no visible global function definition for 'pnorm'
Factor: no visible global function definition for 'new'
Gaussian: no visible global function definition for 'new'
LikelihoodFactor: no visible global function definition for 'new'
Parameters: no visible global function definition for 'new'
Player: no visible global function definition for 'new'
PriorFactor: no visible global function definition for 'new'
SumFactor: no visible global function definition for 'new'
TruncateFactor: no visible global function definition for 'new'
Variable: no visible global function definition for 'new'
Vdraw: no visible global function definition for 'dnorm'
Vdraw: no visible global function definition for 'pnorm'
Vwin: no visible global function definition for 'dnorm'
Vwin: no visible global function definition for 'pnorm'
Wdraw: no visible global function definition for 'dnorm'
Wdraw: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  dnorm new pnorm qnorm
Consider adding
  importFrom("methods", "new")
  importFrom("stats", "dnorm", "pnorm", "qnorm")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Packages required but not available:
  'nleqslv', 'randtoolbox', 'alabama', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mvtnorm', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'evd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'MASS'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
cdens: no visible global function definition for 'head'
dplot: no visible global function definition for 'knots'
dplot: no visible global function definition for 'median'
dplot: no visible global function definition for 'par'
dplot: no visible global function definition for 'plot.stepfun'
dplot: no visible global function definition for 'abline'
edf: no visible global function definition for 'approxfun'
mctest : rdist: no visible global function definition for 'runif'
mctest : S: no visible global function definition for 'optim'
qplot: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline approxfun head knots median optim par plot.stepfun runif
Consider adding
  importFrom("graphics", "abline", "par")
  importFrom("stats", "approxfun", "knots", "median", "optim",
             "plot.stepfun", "runif")
  importFrom("utils", "head")
to your NAMESPACE file.
Package suggested but not available for checking: 'testthat'
Package required but not available: 'maxLik'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'truncreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'jsonlite', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ordinal', 'magrittr', 'dplyr', 'tibble', 'tidyr', 'lme4', 'readr',
  'purrr', 'rmarkdown', 'emmeans', 'DT', 'Rdpack', 'ggplot2',
  'forcats', 'ez'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'futile.logger', 'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'futile.logger'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'vars', 'fftwtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'leaps', 'locfit', 'tseries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'anytime'

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'tibble', 'forecast', 'seasonal', 'dygraphs',
  'xts', 'ggplot2', 'scales', 'knitr', 'rmarkdown', 'tsibble',
  'tsibbledata', 'tibbletime', 'tseries', 'zoo', 'tis', 'timeSeries',
  'nycflights13'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ICtest', 'JADE', 'BSSprep', 'Rcpp', 'forecast', 'xts', 'zoo',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'stochvol', 'MTS', 'tsbox', 'dr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pdc', 'locpol', 'dtw', 'longitudinalData', 'forecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'TSdbi', 'tframe', 'tfplot', 'DBI'

Packages suggested but not available for checking:
  'tframePlus', 'TSsql', 'TSMySQL', 'TSSQLite', 'TSmisc', 'zoo'

Packages which this enhances but not available for checking:
  'TSPostgreSQL', 'TSodbc', 'TSfame'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ltsa'

Packages suggested but not available for checking:
  'xtable', 'gamlss.data', 'surveillance'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Qhat: no visible global function definition for 'pnorm'
plrt: no visible global function definition for 'uniroot'
plrt: no visible global function definition for 'optimize'
simulatedata: no visible global function definition for 'rnorm'
tsc.test: no visible global function definition for 'shapiro.test'
tsc.test: no visible global function definition for 'p.adjust'
tsc.test: no visible global function definition for 'glm'
tsc.test : f: no visible global function definition for 'pnorm'
tsc.test: no visible global function definition for 'uniroot'
tsc.test: no visible global function definition for 'optimize'
variance: no visible global function definition for 'density'
variance: no visible global function definition for 'ecdf'
Undefined global functions or variables:
  density ecdf glm optimize p.adjust pnorm rnorm shapiro.test uniroot
Consider adding
  importFrom("stats", "density", "ecdf", "glm", "optimize", "p.adjust",
             "pnorm", "rnorm", "shapiro.test", "uniroot")
to your NAMESPACE file.
Packages required but not available: 'ggplot2', 'tseries', 'rgl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'tframe', 'tframePlus', 'tfplot', 'TSdbi', 'TSsql', 'TSPostgreSQL',
  'TSMySQL', 'TSSQLite', 'TSodbc', 'TSsdmx', 'TSmisc', 'TScompare',
  'zoo', 'xts', 'tseries', 'WriteXLS', 'DBI', 'RPostgreSQL', 'RSQLite',
  'RMySQL', 'RODBC', 'RJSDMX'
Packages unavailable to check Rd xrefs: 'TSdbi', 'TSPostgreSQL', 'TSMySQL', 'TSSQLite', 'TSodbc', 'TSsdmx', 'TSmisc', 'TScompare', 'tframe', 'tfplot', 'zoo', 'xts', 'tseries', 'WriteXLS', 'DBI', 'RJSDMX', 'RPostgreSQL', 'RSQLite', 'RMySQL', 'RODBC'
Errors in running code in vignettes:
when running code in 'Guide.Stex'
  ...

> options(continue = "  ")

> library("tframe")

  When sourcing 'Guide.R':
Error: there is no package called 'tframe'
Execution halted
when running code in 'GuideAppendix.Stex'
  ...

> options(continue = "  ")

> user <- Sys.getenv("MYSQL_USER")

> setup <- RMySQL::dbConnect(RMySQL::MySQL(), dbname = "test")

  When sourcing 'GuideAppendix.R':
Error: there is no package called 'RMySQL'
Execution halted

  'Guide.Stex'... failed
  'GuideAppendix.Stex'... failed
  'GuideDevel.Stex'... OK
Error(s) in re-building vignettes:
  ...
--- re-building 'Guide.Stex' using Sweave

Error: processing vignette 'Guide.Stex' failed with diagnostics:
 chunk 2 
Error in library("tframe") : there is no package called 'tframe'

--- failed re-building 'Guide.Stex'

--- re-building 'GuideAppendix.Stex' using Sweave

Error: processing vignette 'GuideAppendix.Stex' failed with diagnostics:
 chunk 3 
Error in loadNamespace(x) : there is no package called 'RMySQL'

--- failed re-building 'GuideAppendix.Stex'

--- re-building 'GuideDevel.Stex' using Sweave
--- finished re-building 'GuideDevel.Stex'

SUMMARY: processing the following files failed:
  'Guide.Stex' 'GuideAppendix.Stex'

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'DBI', 'tframe'

Packages suggested but not available for checking:
  'zoo', 'tseries', 'tis', 'tfplot', 'tframePlus'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'datetimeutils', 'fastmatch', 'zoo'

Packages suggested but not available for checking: 'data.table', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Skipping vignette re-building
Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'
Packages required but not available:
  'proxy', 'dtw', 'locpol', 'longitudinalData', 'pdc', 'TSclust',
  'xts', 'zoo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mlbench', 'hash', 'party', 'survRM2', 'modeltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mnormt', 'tseriesChaos', 'tseries', 'vars', 'urca', 'forecast',
  'foreach'

Packages suggested but not available for checking:
  'sm', 'scatterplot3d', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
Namespace in Imports field not imported from: 'stats'
  All declared Imports should be used.
Packages required but not available:
  'xts', 'zoo', 'RcppRoll', 'ranger', 'glmnet', 'earth', 'kernlab',
  'Cubist', 'gbm', 'pls', 'monmlp', 'doParallel', 'foreach', 'xgboost',
  'softImpute'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
Namespace in Imports field not imported from: 'stats'
  All declared Imports should be used.
Package required but not available: 'deSolve'

Package suggested but not available for checking: 'scatterplot3d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'cubature', 'ks'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'quadprog', 'zoo', 'quantmod'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xts', 'quantmod', 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
Namespace in Imports field not imported from: 'stats'
  All declared Imports should be used.
Packages suggested but not available for checking:
  'ggplot2', 'gridExtra', 'mvtnorm'
Running examples in 'ts.extend-Ex.R' failed
The error most likely occurred in:

> ### Name: dGARMA
> ### Title: Density function for the stationary GARMA distribution
> ### Aliases: dGARMA
> 
> ### ** Examples
> 
> data(garma)
> AR <- c(0.8, -0.2)
> MA <- c(0.6,  0.3)
> 
> #Compute the density of the GARMA output
> (DENSITY <- dGARMA(SERIES, ar = AR, ma = MA))
Error in loadNamespace(x) : there is no package called 'mvtnorm'
Calls: dGARMA ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available:
  'TSdbi', 'DBI', 'tframe', 'tframePlus', 'fame', 'tis'

Packages suggested but not available for checking:
  'tseries', 'tfplot', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fracdiff', 'forecast', 'purrr', 'RcppRoll', 'tibble', 'tseries',
  'urca', 'future', 'furrr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2', 'tidyr', 'dplyr',
  'Mcomp', 'GGally'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fracdiff', 'forecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tcltk2', 'tkrplot', 'RandomFieldsUtils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tsibble'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'anytime', 'dplyr', 'ellipsis', 'generics', 'lifecycle', 'lubridate',
  'rlang', 'tibble', 'tidyselect', 'vctrs'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'hms', 'knitr', 'nanotime', 'nycflights13',
  'rmarkdown', 'scales', 'spelling', 'testthat', 'tidyr', 'timeDate'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crosstalk', 'dendextend', 'dplyr', 'glue', 'lubridate', 'plotly',
  'R6', 'rlang', 'shiny', 'tsibble', 'vctrs'

Packages suggested but not available for checking: 'fabletools', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'MAPA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'kernlab', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plus', 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'ggplot2', 'plyr', 'reshape2'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'TSdbi', 'DBI', 'tframe', 'tframePlus', 'zoo', 'tseries', 'quantmod',
  'gdata'

Packages suggested but not available for checking:
  'tfplot', 'xts', 'timeSeries', 'tis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'gam'
Malformed Description field: should contain one or more complete sentences.
dLag : dlag.f: no visible global function definition for
  'complete.cases'
distmat: no visible global function definition for 'dist'
fitCity: no visible global function definition for 'glm.control'
fitCity: no visible global function definition for 'terms'
ldmvnorm: no visible global function definition for 'mahalanobis'
lspline: no visible global function definition for 'quantile'
plot.tsdecomp: no visible global function definition for 'par'
setupFormula: no visible global function definition for 'as.formula'
spatialgibbs: no visible global function definition for 'rnorm'
spatialgibbs: no visible global function definition for 'rgamma'
spatialgibbs: no visible global function definition for 'runif'
tsdecomp: no visible global function definition for 'fft'
Undefined global functions or variables:
  as.formula complete.cases dist fft glm.control mahalanobis par
  quantile rgamma rnorm runif terms
Consider adding
  importFrom("graphics", "par")
  importFrom("stats", "as.formula", "complete.cases", "dist", "fft",
             "glm.control", "mahalanobis", "quantile", "rgamma", "rnorm",
             "runif", "terms")
to your NAMESPACE file.