Errors in running code in vignettes:
when running code in 'Ch_analysing_longitudinal_dataI.Rnw'
  ...

> book <- FALSE

> library("Matrix")

> library("lme4")

  When sourcing 'Ch_analysing_longitudinal_dataI.R':
Error: there is no package called 'lme4'
Execution halted
when running code in 'Ch_analysing_longitudinal_dataII.Rnw'
  ...
> if (!interactive()) {
+     print.summary.gee <- function(x, digits = NULL, quote = FALSE, 
+         prefix = "", ...) {
+         if (is.null(digi .... [TRUNCATED] 

> library("gee")

  When sourcing 'Ch_analysing_longitudinal_dataII.R':
Error: there is no package called 'gee'
Execution halted
when running code in 'Ch_analysis_of_variance.Rnw'
  ...
+     lattice.options(default.theme = function() standard.theme("pdf", 
+         color = .... [TRUNCATED] 

> book <- FALSE

> library("wordcloud")

  When sourcing 'Ch_analysis_of_variance.R':
Error: there is no package called 'wordcloud'
Execution halted
when running code in 'Ch_cluster_analysis.Rnw'
  ...
+     lattice.options(default.theme = function() standard.theme("pdf", 
+         color = .... [TRUNCATED] 

> book <- FALSE

> library("mclust")

  When sourcing 'Ch_cluster_analysis.R':
Error: there is no package called 'mclust'
Execution halted
when running code in 'Ch_conditional_inference.Rnw'
  ...
> nobs <- table(roomwidth$unit)

> ties <- tapply(roomwidth$width, roomwidth$unit, function(x) length(x) - 
+     length(unique(x)))

> library("coin")

  When sourcing 'Ch_conditional_inference.R':
Error: there is no package called 'coin'
Execution halted
when running code in 'Ch_density_estimation.Rnw'
  ...

> x <- library("KernSmooth")
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009

> x <- library("flexmix")

  When sourcing 'Ch_density_estimation.R':
Error: there is no package called 'flexmix'
Execution halted
when running code in 'Ch_gam.Rnw'
  ...

> library("mgcv")
Loading required package: nlme
This is mgcv 1.8-35. For overview type 'help("mgcv-package")'.

> library("mboost")

  When sourcing 'Ch_gam.R':
Error: there is no package called 'mboost'
Execution halted
when running code in 'Ch_graphical_display.Rnw'
  ...
USA   &  20 & 22 & 28 & 33 & 37 \\
\hline
\end{longtable}
\end{center}

> data("banknote", package = "mclust")

  When sourcing 'Ch_graphical_display.R':
Error: there is no package called 'mclust'
Execution halted
when running code in 'Ch_meta_analysis.Rnw'
  ...
> Y <- apply(smoking, 1, odds)

> sum(W * Y)/sum(W)
[1] 1.664159

> library("rmeta")

  When sourcing 'Ch_meta_analysis.R':
Error: there is no package called 'rmeta'
Execution halted
when running code in 'Ch_multidimensional_scaling.Rnw'
  ...
+     lattice.options(default.theme = function() standard.theme("pdf", 
+         color = .... [TRUNCATED] 

> book <- FALSE

> x <- library("ape")

  When sourcing 'Ch_multidimensional_scaling.R':
Error: there is no package called 'ape'
Execution halted
when running code in 'Ch_multiple_linear_regression.Rnw'
  ...
+     lattice.options(default.theme = function() standard.theme("pdf", 
+         color = .... [TRUNCATED] 

> book <- FALSE

> library("wordcloud")

  When sourcing 'Ch_multiple_linear_regression.R':
Error: there is no package called 'wordcloud'
Execution halted
when running code in 'Ch_recursive_partitioning.Rnw'
  ...
+     lattice.options(default.theme = function() standard.theme("pdf", 
+         color = .... [TRUNCATED] 

> book <- FALSE

> library("vcd")

  When sourcing 'Ch_recursive_partitioning.R':
Error: there is no package called 'vcd'
Execution halted
when running code in 'Ch_simple_inference.Rnw'
  ...
+     lattice.options(default.theme = function() standard.theme("pdf", 
+         color = .... [TRUNCATED] 

> book <- FALSE

> library("vcd")

  When sourcing 'Ch_simple_inference.R':
Error: there is no package called 'vcd'
Execution halted
when running code in 'Ch_simultaneous_inference.Rnw'
  ...
+     lattice.options(default.theme = function() standard.theme("pdf", 
+         color = .... [TRUNCATED] 

> book <- FALSE

> library("multcomp")

  When sourcing 'Ch_simultaneous_inference.R':
Error: there is no package called 'multcomp'
Execution halted
when running code in 'Ch_survival_analysis.Rnw'
  ...

> book <- FALSE

> x <- library("survival")

> x <- library("coin")

  When sourcing 'Ch_survival_analysis.R':
Error: there is no package called 'coin'
Execution halted

  'Ch_analysing_longitudinal_dataI.Rnw' using 'UTF-8'... failed
  'Ch_analysing_longitudinal_dataII.Rnw' using 'UTF-8'... failed
  'Ch_analysis_of_variance.Rnw' using 'UTF-8'... failed
  'Ch_cluster_analysis.Rnw' using 'UTF-8'... failed
  'Ch_conditional_inference.Rnw' using 'UTF-8'... failed
  'Ch_density_estimation.Rnw' using 'UTF-8'... failed
  'Ch_errata.Rnw' using 'UTF-8'... OK
  'Ch_gam.Rnw' using 'UTF-8'... failed
  'Ch_graphical_display.Rnw' using 'UTF-8'... failed
  'Ch_introduction_to_R.Rnw' using 'UTF-8'... OK
  'Ch_logistic_regression_glm.Rnw' using 'UTF-8'... OK
  'Ch_meta_analysis.Rnw' using 'UTF-8'... failed
  'Ch_multidimensional_scaling.Rnw' using 'UTF-8'... failed
  'Ch_multiple_linear_regression.Rnw' using 'UTF-8'... failed
  'Ch_principal_components_analysis.Rnw' using 'UTF-8'... OK
  'Ch_recursive_partitioning.Rnw' using 'UTF-8'... failed
  'Ch_simple_inference.Rnw' using 'UTF-8'... failed
  'Ch_simultaneous_inference.Rnw' using 'UTF-8'... failed
  'Ch_survival_analysis.Rnw' using 'UTF-8'... failed