Found the following significant warnings:
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/as.phylo.dendrogram.Rd:18: file link ‘as.phylo.hclust’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/color_branches.Rd:66: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/color_branches.Rd:34: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/color_branches.Rd:36: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/color_branches.Rd:9: file link ‘color_clusters’ in package ‘dendroextras’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/color_branches.Rd:13: file link ‘cutree.dendrogram’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/color_branches.Rd:237: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/color_labels.Rd:51: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/color_labels.Rd:25: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/color_labels.Rd:27: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/color_labels.Rd:80: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/cor_bakers_gamma.Rd:38: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/cor_bakers_gamma.Rd:52: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/cut_lower_fun.Rd:31: file link ‘cutree.dendrogram’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/cut_lower_fun.Rd:59: file link ‘cutree.dendrogram’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/dend_diff.Rd:60: file link ‘distinct.edges’ in package ‘distory’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/distinct_edges.Rd:7: file link ‘distinct.edges’ in package ‘distory’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/distinct_edges.Rd:40: file link ‘distinct.edges’ in package ‘distory’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/ggdend.Rd:69: file link ‘geom_line’ in package ‘ggplot2’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/highlight_branches.Rd:122: file link ‘viridis’ in package ‘viridis’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/highlight_distinct_edges.Rd:93: file link ‘distinct.edges’ in package ‘distory’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/labels_colors.Rd:67: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/ladderize.Rd:19: file link ‘phylo’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/partition_leaves.Rd:7: file link ‘partition.leaves’ in package ‘distory’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/partition_leaves.Rd:52: file link ‘partition.leaves’ in package ‘distory’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/pvrect2.Rd:40: file link ‘pvrect’ in package ‘pvclust’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/pvrect2.Rd:68: file link ‘pvrect’ in package ‘pvclust’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/shuffle.Rd:41: file link ‘phylo’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/shuffle.Rd:25: file link ‘phylo’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/sort_levels_values.Rd:45: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/sort_levels_values.Rd:73: file link ‘cutree’ in package ‘dendextend’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpKSpNuQ/R.INSTALL778644b99535/dendextend/man/unbranch.Rd:47: file link ‘unroot’ in package ‘ape’ does not exist and so has been treated as a topic
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dendextend.Rcheck/00install.out’ for details.