Codoc mismatches from documentation object 'plotConcHist':
plotConcHist
  Code: function(eList, yearStart = NA, yearEnd = NA, concMax = NA,
                 printTitle = TRUE, tinyPlot = FALSE, usgsStyle =
                 FALSE, plotFlowNorm = TRUE, plotAnnual = TRUE,
                 plotGenConc = FALSE, cex = 0.8, cex.axis = 1.1,
                 cex.main = 1.1, lwd = 2, col = "black", col.pred =
                 "green", col.gen = "red", customPar = FALSE, ...)
  Docs: function(eList, yearStart = NA, yearEnd = NA, concMax = NA,
                 printTitle = TRUE, tinyPlot = FALSE, usgsStyle =
                 FALSE, plotFlowNorm = TRUE, plotAnnual = TRUE, cex =
                 0.8, cex.axis = 1.1, cex.main = 1.1, lwd = 2, col =
                 "black", col.pred = "green", customPar = FALSE, ...)
  Argument names in code not in docs:
    plotGenConc col.gen
  Mismatches in argument names (first 3):
    Position: 10 Code: plotGenConc Docs: cex
    Position: 11 Code: cex Docs: cex.axis
    Position: 12 Code: cex.axis Docs: cex.main

Codoc mismatches from documentation object 'plotFluxHist':
plotFluxHist
  Code: function(eList, yearStart = NA, yearEnd = NA, fluxUnit = 9,
                 fluxMax = NA, printTitle = TRUE, usgsStyle = FALSE,
                 plotFlowNorm = TRUE, plotAnnual = TRUE, plotGenFlux =
                 FALSE, tinyPlot = FALSE, col = "black", col.pred =
                 "green", col.gen = "red", cex = 0.8, cex.axis = 1.1,
                 cex.main = 1.1, lwd = 2, customPar = FALSE, ...)
  Docs: function(eList, yearStart = NA, yearEnd = NA, fluxUnit = 9,
                 fluxMax = NA, printTitle = TRUE, usgsStyle = FALSE,
                 plotFlowNorm = TRUE, plotAnnual = TRUE, tinyPlot =
                 FALSE, col = "black", col.pred = "green", cex = 0.8,
                 cex.axis = 1.1, cex.main = 1.1, lwd = 2, customPar =
                 FALSE, ...)
  Argument names in code not in docs:
    plotGenFlux col.gen
  Mismatches in argument names (first 3):
    Position: 10 Code: plotGenFlux Docs: tinyPlot
    Position: 11 Code: tinyPlot Docs: col
    Position: 12 Code: col Docs: col.pred

Codoc mismatches from documentation object 'plotFluxTimeDaily':
plotFluxTimeDaily
  Code: function(eList, yearStart = NA, yearEnd = NA, tinyPlot = FALSE,
                 fluxUnit = 3, fluxMax = NA, randomCensored = FALSE,
                 printTitle = TRUE, usgsStyle = FALSE, cex = 0.8,
                 cex.axis = 1.1, cex.main = 1.1, customPar = FALSE, col
                 = "black", lwd = 1, prettyDate = TRUE, ...)
  Docs: function(eList, yearStart = NA, yearEnd = NA, tinyPlot = FALSE,
                 fluxUnit = 3, fluxMax = NA, printTitle = TRUE,
                 usgsStyle = FALSE, cex = 0.8, cex.axis = 1.1, cex.main
                 = 1.1, customPar = FALSE, col = "black", lwd = 1,
                 prettyDate = TRUE, ...)
  Argument names in code not in docs:
    randomCensored
  Mismatches in argument names (first 3):
    Position: 7 Code: randomCensored Docs: printTitle
    Position: 8 Code: printTitle Docs: usgsStyle
    Position: 9 Code: usgsStyle Docs: cex

Codoc mismatches from documentation object 'runGroups':
runGroups
  Code: function(eList, windowSide, group1firstYear, group1lastYear,
                 group2firstYear, group2lastYear, surfaceStart = NA,
                 surfaceEnd = NA, flowBreak = FALSE, Q1EndDate = NA,
                 QStartDate = NA, QEndDate = NA, wall = FALSE,
                 oldSurface = FALSE, fractMin = 0.75, sample1EndDate =
                 NA, sampleStartDate = NA, sampleEndDate = NA, paStart
                 = NA, paLong = NA, minNumObs = 100, minNumUncen = 50,
                 windowY = 7, windowQ = 2, windowS = 0.5, edgeAdjust =
                 TRUE, verbose = TRUE)
  Docs: function(eList, windowSide, group1firstYear, group1lastYear,
                 group2firstYear, group2lastYear, surfaceStart = NA,
                 surfaceEnd = NA, flowBreak = FALSE, Q1EndDate = NA,
                 QStartDate = NA, QEndDate = NA, wall = FALSE,
                 oldSurface = FALSE, fractMin = 0.75, sample1EndDate =
                 NA, sampleStartDate = NA, sampleEndDate = NA, paStart
                 = 10, paLong = 12, minNumObs = 100, minNumUncen = 50,
                 windowY = 7, windowQ = 2, windowS = 0.5, edgeAdjust =
                 TRUE, verbose = TRUE)
  Mismatches in argument default values:
    Name: 'paStart' Code: NA Docs: 10
    Name: 'paLong' Code: NA Docs: 12

Codoc mismatches from documentation object 'runPairs':
runPairs
  Code: function(eList, year1, year2, windowSide, flowBreak = FALSE,
                 Q1EndDate = NA, QStartDate = NA, QEndDate = NA, wall =
                 FALSE, oldSurface = FALSE, sample1EndDate = NA,
                 sampleStartDate = NA, sampleEndDate = NA, paStart =
                 NA, paLong = NA, minNumObs = 100, minNumUncen = 50,
                 fractMin = 0.75, windowY = 7, windowQ = 2, windowS =
                 0.5, edgeAdjust = TRUE)
  Docs: function(eList, year1, year2, windowSide, flowBreak = FALSE,
                 Q1EndDate = NA, QStartDate = NA, QEndDate = NA, wall =
                 FALSE, oldSurface = FALSE, sample1EndDate = NA,
                 sampleStartDate = NA, sampleEndDate = NA, paStart =
                 10, paLong = 12, minNumObs = 100, minNumUncen = 50,
                 fractMin = 0.75, windowY = 7, windowQ = 2, windowS =
                 0.5, edgeAdjust = TRUE)
  Mismatches in argument default values:
    Name: 'paStart' Code: NA Docs: 10
    Name: 'paLong' Code: NA Docs: 12

Codoc mismatches from documentation object 'runSeries':
runSeries
  Code: function(eList, windowSide, surfaceStart = NA, surfaceEnd = NA,
                 flowBreak = FALSE, Q1EndDate = NA, QStartDate = NA,
                 QEndDate = NA, wall = FALSE, oldSurface = FALSE,
                 sample1EndDate = NA, sampleStartDate = NA,
                 sampleEndDate = NA, paStart = NA, paLong = NA,
                 fractMin = 0.75, minNumObs = 100, minNumUncen = 50,
                 windowY = 7, windowQ = 2, windowS = 0.5, edgeAdjust =
                 TRUE, verbose = TRUE)
  Docs: function(eList, windowSide, surfaceStart = NA, surfaceEnd = NA,
                 flowBreak = FALSE, Q1EndDate = NA, QStartDate = NA,
                 QEndDate = NA, wall = FALSE, oldSurface = FALSE,
                 sample1EndDate = NA, sampleStartDate = NA,
                 sampleEndDate = NA, paStart = 10, paLong = 12,
                 fractMin = 0.75, minNumObs = 100, minNumUncen = 50,
                 windowY = 7, windowQ = 2, windowS = 0.5, edgeAdjust =
                 TRUE, verbose = TRUE)
  Mismatches in argument default values:
    Name: 'paStart' Code: NA Docs: 10
    Name: 'paLong' Code: NA Docs: 12