Codoc mismatches from documentation object 'init_pal':
init_pal
  Code: function(N_col = pal_def["N"], cond_true_col =
                 pal_def["cond_true"], cond_false_col =
                 pal_def["cond_false"], dec_pos_col =
                 pal_def["dec_pos"], dec_neg_col = pal_def["dec_neg"],
                 dec_cor_col = pal_def["dec_cor"], dec_err_col =
                 pal_def["dec_err"], hi_col = pal_def["hi"], mi_col =
                 pal_def["mi"], fa_col = pal_def["fa"], cr_col =
                 pal_def["cr"], PPV_col = pal_def["ppv"], NPV_col =
                 pal_def["npv"], txt_col = pal_def["txt"], brd_col =
                 pal_def["brd"], bg_col = pal_def["bg"])
  Docs: function(N_col = pal_def["N"], cond_true_col =
                 pal_def["cond_true"], cond_false_col =
                 pal_def["cond_false"], dec_pos_col =
                 pal_def["dec_pos"], dec_neg_col = pal_def["dec_neg"],
                 dec_cor_col = pal_def["dec_cor"], dec_err_col =
                 pal_def["dec_err"], hi_col = pal_def["hi"], mi_col =
                 pal_def["mi"], fa_col = pal_def["fa"], cr_col =
                 pal_def["cr"], PPV_col = pal_def["ppv"], NPV_col =
                 pal_def["npv"], txt_col = pal_def["txt"], brd_col =
                 pal_def["brd"])
  Argument names in code not in docs:
    bg_col

Codoc mismatches from documentation object 'plot_area':
plot_area
  Code: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, N = num$N, by = "cddc", p_split =
                 "v", area = "sq", scale = "p", round = TRUE, sum_w =
                 0.1, gaps = c(NA, NA), f_lbl = "num", f_lbl_sep = NA,
                 f_lbl_sum = "num", f_lbl_hd = "nam", f_lwd = 0, p_lbl
                 = NA, arr_c = -3, col_p = c(grey(0.15, 0.99),
                 "yellow", "yellow"), brd_dis = 0.06, lbl_txt = txt,
                 title_lbl = txt$scen_lbl, cex_lbl = 0.9, cex_p_lbl =
                 NA, col_pal = pal, mar_notes = FALSE, ...)
  Docs: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, N = num$N, by = "cddc", p_split =
                 "v", area = "sq", scale = "p", round = TRUE, sum_w =
                 0.1, gaps = c(NA, NA), f_lbl = "num", f_lbl_sep = NA,
                 f_lbl_sum = "num", f_lbl_hd = "abb", f_lwd = 0, p_lbl
                 = NA, arr_c = -3, col_p = c(grey(0.15, 0.99),
                 "yellow", "yellow"), brd_dis = 0.06, lbl_txt = txt,
                 title_lbl = txt$scen_lbl, cex_lbl = 0.9, cex_p_lbl =
                 NA, col_pal = pal, mar_notes = TRUE, ...)
  Mismatches in argument default values:
    Name: 'f_lbl_hd' Code: "nam" Docs: "abb"
    Name: 'mar_notes' Code: FALSE Docs: TRUE

Codoc mismatches from documentation object 'plot_bar':
plot_bar
  Code: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, N = num$N, by = "all", dir = 1,
                 scale = "f", round = TRUE, f_lbl = "num", f_lwd = 1,
                 lty = 0, lbl_txt = txt, title_lbl = txt$scen_lbl,
                 col_pal = pal, mar_notes = FALSE, ...)
  Docs: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, N = num$N, by = "all", dir = 1,
                 scale = "f", round = TRUE, f_lbl = "num", f_lwd = 1,
                 lty = 0, lbl_txt = txt, title_lbl = txt$scen_lbl,
                 col_pal = pal, mar_notes = TRUE, ...)
  Mismatches in argument default values:
    Name: 'mar_notes' Code: FALSE Docs: TRUE

Codoc mismatches from documentation object 'plot_curve':
plot_curve
  Code: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, what = c("prev", "PPV", "NPV"),
                 p_lbl = "def", p_lwd = 2, what_col = pal, uc = 0,
                 show_points = TRUE, log_scale = FALSE, prev_range =
                 c(0, 1), lbl_txt = txt, title_lbl = NA, cex_lbl =
                 0.85, col_pal = pal, mar_notes = FALSE, ...)
  Docs: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, what = c("prev", "PPV", "NPV"),
                 what_col = pal, uc = 0, show_points = TRUE, log_scale
                 = FALSE, lbl_txt = txt, title_lbl = NA, p_lbl = "def",
                 cex_lbl = 0.85, col_pal = pal, mar_notes = TRUE, ...)
  Argument names in code not in docs:
    p_lwd prev_range
  Mismatches in argument names (first 3):
    Position: 7 Code: p_lbl Docs: what_col
    Position: 8 Code: p_lwd Docs: uc
    Position: 9 Code: what_col Docs: show_points
  Mismatches in argument default values:
    Name: 'mar_notes' Code: FALSE Docs: TRUE

Codoc mismatches from documentation object 'plot_icons':
plot_icons
  Code: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, N = freq$N, arr_type = "array",
                 by = "all", ident_order = c("hi", "mi", "fa", "cr"),
                 icon_types = 22, icon_size = NULL, icon_brd_lwd = 1.5,
                 block_d = NULL, border_d = 0.1, block_size_row = 10,
                 block_size_col = 10, nblocks_row = NULL, nblocks_col =
                 NULL, fill_array = "left", fill_blocks = "rowwise",
                 lbl_txt = txt, title_lbl = txt$scen_lbl, cex_lbl =
                 0.9, col_pal = pal, transparency = 0.5, mar_notes =
                 FALSE, ...)
  Docs: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, N = freq$N, arr_type = "array",
                 by = "all", ident_order = c("hi", "mi", "fa", "cr"),
                 icon_types = 22, icon_size = NULL, icon_brd_lwd = 1.5,
                 block_d = NULL, border_d = 0.1, block_size_row = 10,
                 block_size_col = 10, nblocks_row = NULL, nblocks_col =
                 NULL, fill_array = "left", fill_blocks = "rowwise",
                 lbl_txt = txt, title_lbl = txt$scen_lbl, cex_lbl =
                 0.9, col_pal = pal, transparency = 0.5, mar_notes =
                 TRUE, ...)
  Mismatches in argument default values:
    Name: 'mar_notes' Code: FALSE Docs: TRUE

Codoc mismatches from documentation object 'plot_plane':
plot_plane
  Code: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, what = "PPV", what_col = pal,
                 line_col = "grey85", sens_range = c(0, 1), spec_range
                 = c(0, 1), step_size = 0.05, show_points = TRUE,
                 point_col = "yellow", theta = -45, phi = 0, lbl_txt =
                 txt, title_lbl = NA, p_lbl = "def", cex_lbl = 0.85,
                 col_pal = pal, mar_notes = FALSE, ...)
  Docs: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, what = "PPV", what_col = pal,
                 line_col = "grey85", point_col = "yellow", show_point
                 = TRUE, step_size = 0.05, theta = -45, phi = 0,
                 lbl_txt = txt, title_lbl = NA, p_lbl = "def", cex_lbl
                 = 0.85, col_pal = pal, mar_notes = TRUE, ...)
  Argument names in code not in docs:
    sens_range spec_range show_points
  Argument names in docs not in code:
    show_point
  Mismatches in argument names (first 3):
    Position: 9 Code: sens_range Docs: point_col
    Position: 10 Code: spec_range Docs: show_point
    Position: 12 Code: show_points Docs: theta
  Mismatches in argument default values:
    Name: 'mar_notes' Code: FALSE Docs: TRUE

Codoc mismatches from documentation object 'plot_prism':
plot_prism
  Code: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, N = num$N, by = "cddc", area =
                 "no", scale = "p", round = TRUE, f_lbl = "num",
                 f_lbl_sep = NA, f_lwd = 0, p_lwd = 1, p_scale = FALSE,
                 p_lbl = "mix", arr_c = NA, lbl_txt = txt, title_lbl =
                 txt$scen_lbl, cex_lbl = 0.9, cex_p_lbl = NA, col_pal =
                 pal, mar_notes = FALSE, ...)
  Docs: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, N = num$N, by = "cddc", area =
                 "no", scale = "p", round = TRUE, f_lbl = "num",
                 f_lbl_sep = NA, f_lwd = 0, p_lbl = "mix", arr_c = NA,
                 lbl_txt = txt, title_lbl = txt$scen_lbl, cex_lbl =
                 0.9, cex_p_lbl = NA, col_pal = pal, mar_notes = TRUE,
                 ...)
  Argument names in code not in docs:
    p_lwd p_scale
  Mismatches in argument names (first 3):
    Position: 14 Code: p_lwd Docs: p_lbl
    Position: 15 Code: p_scale Docs: arr_c
    Position: 16 Code: p_lbl Docs: lbl_txt
  Mismatches in argument default values:
    Name: 'mar_notes' Code: FALSE Docs: TRUE

Codoc mismatches from documentation object 'plot_tab':
plot_tab
  Code: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, N = num$N, by = "cddc", p_split =
                 "v", area = "no", scale = "p", round = TRUE, f_lbl =
                 "num", f_lbl_sep = NA, f_lbl_sum = f_lbl, f_lbl_hd =
                 "nam", f_lwd = 0, gaps = c(NA, NA), brd_w = 0.1, p_lbl
                 = NA, arr_c = -3, col_p = c(grey(0.15, 0.99),
                 "yellow", "yellow"), brd_dis = 0.3, lbl_txt = txt,
                 title_lbl = txt$scen_lbl, cex_lbl = 0.9, cex_p_lbl =
                 NA, col_pal = pal, mar_notes = FALSE, ...)
  Docs: function(prev = num$prev, sens = num$sens, mirt = NA, spec =
                 num$spec, fart = NA, N = num$N, by = "cddc", p_split =
                 "v", area = "no", scale = "p", round = TRUE, f_lbl =
                 "num", f_lbl_sep = NA, f_lbl_sum = f_lbl, f_lbl_hd =
                 "abb", f_lwd = 0, gaps = c(NA, NA), brd_w = 0.1, p_lbl
                 = NA, arr_c = -3, col_p = c(grey(0.15, 0.99),
                 "yellow", "yellow"), brd_dis = 0.3, lbl_txt = txt,
                 title_lbl = txt$scen_lbl, cex_lbl = 0.9, cex_p_lbl =
                 NA, col_pal = pal, mar_notes = TRUE, ...)
  Mismatches in argument default values:
    Name: 'f_lbl_hd' Code: "nam" Docs: "abb"
    Name: 'mar_notes' Code: FALSE Docs: TRUE