Running ‘testthat.R’ [12s/64s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(ptm)
  > 
  > test_check("ptm")
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   $ echo     : logi FALSE
  
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  MUSCLE v3.8.31 by Robert C. Edgar
  
  http://www.drive5.com/muscle
  This software is donated to the public domain.
  Please cite: Edgar, R.C. Nucleic Acids Res 32(5), 1792-97.
  
  file5e73f84bd04 2 seqs, max length 418, avg  length 406
  907 MB(1%)00:00:00                Iter   1   33.33%  K-mer dist pass 1
  907 MB(1%)00:00:00                Iter   1  100.00%  K-mer dist pass 1
  907 MB(1%)00:00:00                Iter   1   33.33%  K-mer dist pass 2
  907 MB(1%)00:00:00                Iter   1  100.00%  K-mer dist pass 2
  907 MB(1%)00:00:00                Iter   1  100.00%  Align node       
  907 MB(1%)00:00:00                Iter   1  100.00%  Align node
  907 MB(1%)00:00:00                Iter   1   50.00%  Root alignment
  907 MB(1%)00:00:00                Iter   1  100.00%  Root alignment
  907 MB(1%)00:00:00                Iter   1  100.00%  Root alignment
  file5e75ed63e2e 2 seqs, max length 418, avg  length 406
  915 MB(1%)00:00:00                Iter   1   33.33%  K-mer dist pass 1
  915 MB(1%)00:00:00                Iter   1  100.00%  K-mer dist pass 1
  915 MB(1%)00:00:00                Iter   1   33.33%  K-mer dist pass 2
  915 MB(1%)00:00:00                Iter   1  100.00%  K-mer dist pass 2
  915 MB(1%)00:00:00                Iter   1  100.00%  Align node       
  915 MB(1%)00:00:00                Iter   1  100.00%  Align node
  915 MB(1%)00:00:00                Iter   1   50.00%  Root alignment
  915 MB(1%)00:00:00                Iter   1  100.00%  Root alignment
  915 MB(1%)00:00:00                Iter   1  100.00%  Root alignment
  file5e77b205789 2 seqs, max length 418, avg  length 406
  926 MB(1%)00:00:00                Iter   1   33.33%  K-mer dist pass 1
  926 MB(1%)00:00:00                Iter   1  100.00%  K-mer dist pass 1
  926 MB(1%)00:00:00                Iter   1   33.33%  K-mer dist pass 2
  926 MB(1%)00:00:00                Iter   1  100.00%  K-mer dist pass 2
  926 MB(1%)00:00:00                Iter   1  100.00%  Align node       
  926 MB(1%)00:00:00                Iter   1  100.00%  Align node
  926 MB(1%)00:00:00                Iter   1   50.00%  Root alignment
  926 MB(1%)00:00:00                Iter   1  100.00%  Root alignment
  926 MB(1%)00:00:00                Iter   1  100.00%  Root alignment
  file5e754cdd506 2 seqs, max length 418, avg  length 406
  937 MB(1%)00:00:00                Iter   1   33.33%  K-mer dist pass 1
  937 MB(1%)00:00:00                Iter   1  100.00%  K-mer dist pass 1
  937 MB(1%)00:00:00                Iter   1   33.33%  K-mer dist pass 2
  937 MB(1%)00:00:00                Iter   1  100.00%  K-mer dist pass 2
  937 MB(1%)00:00:00                Iter   1  100.00%  Align node       
  937 MB(1%)00:00:00                Iter   1  100.00%  Align node
  937 MB(1%)00:00:00                Iter   1   50.00%  Root alignment
  937 MB(1%)00:00:00                Iter   1  100.00%  Root alignment
  937 MB(1%)00:00:00                Iter   1  100.00%  Root alignment
  file5e7636e5f6a 2 seqs, max length 418, avg  length 406
  946 MB(1%)00:00:00                Iter   1   33.33%  K-mer dist pass 1
  946 MB(1%)00:00:00                Iter   1  100.00%  K-mer dist pass 1
  946 MB(1%)00:00:00                Iter   1   33.33%  K-mer dist pass 2
  946 MB(1%)00:00:00                Iter   1  100.00%  K-mer dist pass 2
  946 MB(1%)00:00:00                Iter   1  100.00%  Align node       
  946 MB(1%)00:00:00                Iter   1  100.00%  Align node
  946 MB(1%)00:00:00                Iter   1   50.00%  Root alignment
  946 MB(1%)00:00:00                Iter   1  100.00%  Root alignment
  946 MB(1%)00:00:00                Iter   1  100.00%  Root alignment
  file5e77b40d8b6 2 seqs, max length 476, avg  length 476
  955 MB(1%)00:00:00                Iter   1   33.33%  K-mer dist pass 1
  955 MB(1%)00:00:00                Iter   1  100.00%  K-mer dist pass 1
  955 MB(1%)00:00:00                Iter   1   33.33%  K-mer dist pass 2
  955 MB(1%)00:00:00                Iter   1  100.00%  K-mer dist pass 2
  955 MB(1%)00:00:00                Iter   1  100.00%  Align node       
  955 MB(1%)00:00:00                Iter   1  100.00%  Align node
  955 MB(1%)00:00:00                Iter   1   50.00%  Root alignment
  955 MB(1%)00:00:00                Iter   1  100.00%  Root alignment
  955 MB(1%)00:00:00                Iter   1  100.00%  Root alignment
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  ● On CRAN (63)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test_ptmScan.R:114:3): ptm.scan() works properly ─────────────────────
  Error: replacement has 2 rows, data has 1
  Backtrace:
      █
   1. ├─base::suppressWarnings(ptm.scan("Q15796")) test_ptmScan.R:114:2
   2. │ └─base::withCallingHandlers(...)
   3. └─ptm::ptm.scan("Q15796")
   4.   ├─base::`$<-`(`*tmp*`, "p", value = c(NA, TRUE))
   5.   └─base::`$<-.data.frame`(`*tmp*`, "p", value = c(NA, TRUE))
  
  [ FAIL 1 | WARN 7 | SKIP 63 | PASS 182 ]
  Error: Test failures
  Execution halted