Running ‘testthat.R’ [9m/12m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > test_check("Cyclops")
  Loading required package: Cyclops
  Sorting outcomes by stratumId and rowId
  Sorting covariates by covariateId, stratumId, and rowId
  Sorting outcomes by stratumId and rowId
  Sorting covariates by covariateId, stratumId, and rowId
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sparseness = 76.245 %
  Sorting covariates by covariateId, stratumId, and rowId
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sparseness = 75.76 %
  Sorting covariates by covariateId and rowId
  Sparseness = 98.96 %
  Sorting covariates by covariateId and rowId
  Sorting covariates by covariateId and rowId
  Sparseness = 99.012 %
  Sorting covariates by covariateId and rowId
  Sparseness = 99.012 %
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sparseness = 75.61 %
  Sorting covariates by covariateId and rowId
  Sparseness = 75.68 %
  Sorting covariates by covariateId and rowId
  Sparseness = 74.8 %
  Sorting covariates by covariateId and rowId
  Sparseness = 76.3 %
  Sorting covariates by covariateId and rowId
  Sparseness = 99.012 %
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Generating censoring weights
  Generating censoring weights
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sparseness = 98.0118 %
  Sorting covariates by covariateId and rowId
  Using cross-validation selector type byRow
  Performing 10-fold cross-validation [seed = 123] with data partitions of sizes 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000
  Using 1 thread(s)
  Starting var = 0.1
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #1 Rep #1 pred log like = -359.926
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #2 Rep #1 pred log like = -377.049
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #3 Rep #1 pred log like = -366.419
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #4 Rep #1 pred log like = -329.533
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #5 Rep #1 pred log like = -371.333
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #6 Rep #1 pred log like = -339.827
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #7 Rep #1 pred log like = -332.976
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #8 Rep #1 pred log like = -335.49
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #9 Rep #1 pred log like = -351.506
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #10 Rep #1 pred log like = -360.381
  AvgPred = -352.444 with stdev = 16.2107
  Completed at 0.1
  Next point at 1 with value 0 and continue = 1
  search[ 0.1 ] = -352.444(16.2107)
  
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #1 Rep #1 pred log like = -361.672
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #2 Rep #1 pred log like = -376.649
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #3 Rep #1 pred log like = -370.076
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #4 Rep #1 pred log like = -331.986
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #5 Rep #1 pred log like = -371.728
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #6 Rep #1 pred log like = -339.759
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #7 Rep #1 pred log like = -333.917
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #8 Rep #1 pred log like = -338.677
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #9 Rep #1 pred log like = -353.013
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #10 Rep #1 pred log like = -362.059
  AvgPred = -353.954 with stdev = 15.9249
  Completed at 1
  Next point at 0.01 with value 0 and continue = 1
  search[ 0.1 ] = -352.444(16.2107)
  search[ 1 ] = -353.954(15.9249)
  
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #1 Rep #1 pred log like = -359.09
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #2 Rep #1 pred log like = -379.234
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #3 Rep #1 pred log like = -363.282
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #4 Rep #1 pred log like = -328.435
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #5 Rep #1 pred log like = -372.364
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #6 Rep #1 pred log like = -339.3
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #7 Rep #1 pred log like = -333.474
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #8 Rep #1 pred log like = -332.527
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #9 Rep #1 pred log like = -350.45
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #10 Rep #1 pred log like = -361.312
  AvgPred = -351.947 with stdev = 16.9176
  Completed at 0.01
  Next point at 0.001 with value 0 and continue = 1
  search[ 0.01 ] = -351.947(16.9176)
  search[ 0.1 ] = -352.444(16.2107)
  search[ 1 ] = -353.954(15.9249)
  
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #1 Rep #1 pred log like = -360.12
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #2 Rep #1 pred log like = -385.123
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #3 Rep #1 pred log like = -367.672
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #4 Rep #1 pred log like = -332.671
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #5 Rep #1 pred log like = -373.879
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #6 Rep #1 pred log like = -343.23
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #7 Rep #1 pred log like = -337.309
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #8 Rep #1 pred log like = -336.298
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #9 Rep #1 pred log like = -351.753
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #10 Rep #1 pred log like = -366.389
  AvgPred = -355.444 with stdev = 16.9961
  Completed at 0.001
  Next point at 0.0456986 with value -351.862 and continue = 0
  search[ 0.001 ] = -355.444(16.9961)
  search[ 0.01 ] = -351.947(16.9176)
  search[ 0.1 ] = -352.444(16.2107)
  search[ 1 ] = -353.954(15.9249)
  
  
  Maximum predicted log likelihood (-351.862) estimated at:
  	0.0456986 (variance)
  	6.61551 (lambda)
  
  Fitting model at optimal hyperparameter
  Using prior: Laplace(6.61551) None 
  Using cross-validation selector type byRow
  Performing 10-fold cross-validation [seed = 1616185057] with data partitions of sizes 1 1 1 1 1 1 1 1 1 0
  Using 1 thread(s)
  Starting var = 0.333333 (default)
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #1 Rep #1 pred log like = 44.57
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #2 Rep #1 pred log like = 24.9454
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #3 Rep #1 pred log like = 112.869
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #4 Rep #1 pred log like = 106.597
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #5 Rep #1 pred log like = 14.674
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #6 Rep #1 pred log like = 59.4912
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #7 Rep #1 pred log like = 33.6249
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #8 Rep #1 pred log like = 20.3427
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #9 Rep #1 pred log like = 79.8291
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #10 Rep #1 pred log like = 0
  AvgPred = 49.6944 with stdev = 36.9967
  Completed at 0.333333
  Next point at 3.33333 with value 0 and continue = 1
  search[ 0.333333 ] = 49.6944(36.9967)
  
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #1 Rep #1 pred log like = 44.6336
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #2 Rep #1 pred log like = 24.7929
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #3 Rep #1 pred log like = 110.219
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #4 Rep #1 pred log like = 106.149
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #5 Rep #1 pred log like = 14.5878
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #6 Rep #1 pred log like = 57.342
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #7 Rep #1 pred log like = 32.8914
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #8 Rep #1 pred log like = 20.3443
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #9 Rep #1 pred log like = 79.7695
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #10 Rep #1 pred log like = 0
  AvgPred = 49.073 with stdev = 36.4705
  Completed at 3.33333
  Next point at 0.0333333 with value 0 and continue = 1
  search[ 0.333333 ] = 49.6944(36.9967)
  search[ 3.33333 ] = 49.073(36.4705)
  
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #1 Rep #1 pred log like = 43.169
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #2 Rep #1 pred log like = 25.0614
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #3 Rep #1 pred log like = 118.442
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #4 Rep #1 pred log like = 107.806
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #5 Rep #1 pred log like = 15.7525
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #6 Rep #1 pred log like = 60.6085
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #7 Rep #1 pred log like = 34.0061
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #8 Rep #1 pred log like = 20.3273
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #9 Rep #1 pred log like = 79.6334
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #10 Rep #1 pred log like = 0
  AvgPred = 50.4806 with stdev = 38.0683
  Completed at 0.0333333
  Next point at 0.00333333 with value 0 and continue = 1
  search[ 0.0333333 ] = 50.4806(38.0683)
  search[ 0.333333 ] = 49.6944(36.9967)
  search[ 3.33333 ] = 49.073(36.4705)
  
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #1 Rep #1 pred log like = 42.498
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #2 Rep #1 pred log like = 25.4635
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #3 Rep #1 pred log like = 118.246
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #4 Rep #1 pred log like = 106.001
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #5 Rep #1 pred log like = 16.8111
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #6 Rep #1 pred log like = 62.1884
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #7 Rep #1 pred log like = 33.9945
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #8 Rep #1 pred log like = 19.9614
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #9 Rep #1 pred log like = 79.0526
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #10 Rep #1 pred log like = 0
  AvgPred = 50.4216 with stdev = 37.6865
  Completed at 0.00333333
  Next point at 0.00389976 with value 50.4732 and continue = 0
  search[ 0.00333333 ] = 50.4216(37.6865)
  search[ 0.0333333 ] = 50.4806(38.0683)
  search[ 0.333333 ] = 49.6944(36.9967)
  search[ 3.33333 ] = 49.073(36.4705)
  
  
  Maximum predicted log likelihood (50.4732) estimated at:
  	0.00389976 (variance)
  	22.6462 (lambda)
  
  Fitting model at optimal hyperparameter
  Using prior: Laplace(22.6462) None 
  Sparseness = 80.112 %
  Sorting covariates by covariateId, stratumId, and rowId
  Using cross-validation selector type byPid
  Performing 10-fold cross-validation [seed = 123] with data partitions of sizes 100 100 100 100 100 100 100 100 100 100
  Using 1 thread(s)
  Starting var = 0.1
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #1 Rep #1 pred log like = -13831.3
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #2 Rep #1 pred log like = -14261.2
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #3 Rep #1 pred log like = -11897.4
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #4 Rep #1 pred log like = -13027.5
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #5 Rep #1 pred log like = -13630.9
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #6 Rep #1 pred log like = -13533.8
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #7 Rep #1 pred log like = -12659.8
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #8 Rep #1 pred log like = -13093.8
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #9 Rep #1 pred log like = -14538.7
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #10 Rep #1 pred log like = -14229.5
  AvgPred = -13470.4 with stdev = 772.806
  Completed at 0.1
  Next point at 1 with value 0 and continue = 1
  search[ 0.1 ] = -13470.4(772.806)
  
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #1 Rep #1 pred log like = -13831.3
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #2 Rep #1 pred log like = -14261.2
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #3 Rep #1 pred log like = -11897.4
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #4 Rep #1 pred log like = -13027.5
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #5 Rep #1 pred log like = -13630.9
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #6 Rep #1 pred log like = -13533.8
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #7 Rep #1 pred log like = -12659.8
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #8 Rep #1 pred log like = -13093.8
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #9 Rep #1 pred log like = -14538.7
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #10 Rep #1 pred log like = -14229.5
  AvgPred = -13470.4 with stdev = 772.793
  Completed at 1
  Next point at 0.01 with value 0 and continue = 1
  search[ 0.1 ] = -13470.4(772.806)
  search[ 1 ] = -13470.4(772.793)
  
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #1 Rep #1 pred log like = -13831.3
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #2 Rep #1 pred log like = -14261.1
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #3 Rep #1 pred log like = -11897.2
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #4 Rep #1 pred log like = -13027.6
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #5 Rep #1 pred log like = -13630.8
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #6 Rep #1 pred log like = -13533.7
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #7 Rep #1 pred log like = -12659.7
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #8 Rep #1 pred log like = -13093.7
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #9 Rep #1 pred log like = -14538.7
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #10 Rep #1 pred log like = -14229.7
  AvgPred = -13470.4 with stdev = 772.849
  Completed at 0.01
  Next point at 0.001 with value 0 and continue = 1
  search[ 0.01 ] = -13470.4(772.849)
  search[ 0.1 ] = -13470.4(772.806)
  search[ 1 ] = -13470.4(772.793)
  
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #1 Rep #1 pred log like = -13831.6
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #2 Rep #1 pred log like = -14260.8
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #3 Rep #1 pred log like = -11896.9
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #4 Rep #1 pred log like = -13027.9
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #5 Rep #1 pred log like = -13630.6
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #6 Rep #1 pred log like = -13533.5
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #7 Rep #1 pred log like = -12659.5
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #8 Rep #1 pred log like = -13093.4
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #9 Rep #1 pred log like = -14538.9
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #10 Rep #1 pred log like = -14229.8
  AvgPred = -13470.3 with stdev = 772.946
  Completed at 0.001
  Next point at 0.0001 with value 0 and continue = 1
  search[ 0.001 ] = -13470.3(772.946)
  search[ 0.01 ] = -13470.4(772.849)
  search[ 0.1 ] = -13470.4(772.806)
  search[ 1 ] = -13470.4(772.793)
  
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #1 Rep #1 pred log like = -13832.4
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #2 Rep #1 pred log like = -14260.4
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #3 Rep #1 pred log like = -11896.3
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #4 Rep #1 pred log like = -13029
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #5 Rep #1 pred log like = -13630
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #6 Rep #1 pred log like = -13533.2
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #7 Rep #1 pred log like = -12658.7
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #8 Rep #1 pred log like = -13093.2
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #9 Rep #1 pred log like = -14539.5
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #10 Rep #1 pred log like = -14229.5
  AvgPred = -13470.2 with stdev = 773.143
  Completed at 0.0001
  Next point at 1e-05 with value 0 and continue = 1
  search[ 0.0001 ] = -13470.2(773.143)
  search[ 0.001 ] = -13470.3(772.946)
  search[ 0.01 ] = -13470.4(772.849)
  search[ 0.1 ] = -13470.4(772.806)
  search[ 1 ] = -13470.4(772.793)
  
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #1 Rep #1 pred log like = -13834.4
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #2 Rep #1 pred log like = -14260
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #3 Rep #1 pred log like = -11895.8
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #4 Rep #1 pred log like = -13030.7
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #5 Rep #1 pred log like = -13630.7
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #6 Rep #1 pred log like = -13534.8
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #7 Rep #1 pred log like = -12659.8
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #8 Rep #1 pred log like = -13093.3
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #9 Rep #1 pred log like = -14541.4
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #10 Rep #1 pred log like = -14230
  AvgPred = -13471.1 with stdev = 773.436
  Completed at 1e-05
  Next point at 0.0114688 with value -13470.2 and continue = 0
  search[ 1e-05 ] = -13471.1(773.436)
  search[ 0.0001 ] = -13470.2(773.143)
  search[ 0.001 ] = -13470.3(772.946)
  search[ 0.01 ] = -13470.4(772.849)
  search[ 0.1 ] = -13470.4(772.806)
  search[ 1 ] = -13470.4(772.793)
  
  
  Maximum predicted log likelihood (-13470.2) estimated at:
  	0.0114688 (variance)
  	13.2055 (lambda)
  
  Fitting model at optimal hyperparameter
  Using prior: Laplace(13.2055) None 
  Sparseness = 80.112 %
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sparseness = 99.09 %
  Sorting covariates by covariateId and rowId
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  ● Current not working (1)
  ● On CRAN (4)
  ● empty test (5)
  ● for debugging purposes; simulation takes too long (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (test-survfit.R:27:5): Check very small Cox example with no ties, breslow baseline ──
  goldSurv$surv not equal to cyclopsSurv$surv.
  7/7 mismatches (average diff: 0.118)
  [1] 0.9423 - 0.8922 == 0.0500
  [2] 0.9423 - 0.8922 == 0.0500
  [3] 0.8785 - 0.7802 == 0.0983
  [4] 0.7811 - 0.6228 == 0.1583
  [5] 0.7811 - 0.6228 == 0.1583
  [6] 0.5840 - 0.3567 == 0.2273
  [7] 0.0964 - 0.0113 == 0.0851
  ── Failure (test-survfit.R:51:5): Check very small Cox example with time-ties, but no failure ties, breslow baseline ──
  goldSurv$surv not equal to cyclopsSurv$surv.
  4/4 mismatches (average diff: 0.0174)
  [1] 0.865 - 0.874 == -0.0086
  [2] 0.698 - 0.716 == -0.0174
  [3] 0.505 - 0.529 == -0.0242
  [4] 0.131 - 0.151 == -0.0196
  ── Failure (test-survfit.R:73:5): Check very small Cox example with failure ties, no risk-set contribution after tie, breslow baseline ──
  goldSurv$surv not equal to cyclopsSurv$surv.
  3/3 mismatches (average diff: 0.0615)
  [1] 0.679 - 0.621 == 0.0578
  [2] 0.524 - 0.451 == 0.0724
  [3] 0.156 - 0.102 == 0.0543
  ── Failure (test-survfit.R:96:5): Check very small Cox example with failure ties, with risk-set contribution after tie, breslow baseline ──
  goldSurv$surv not equal to cyclopsSurv$surv.
  4/4 mismatches (average diff: 0.0728)
  [1] 0.912 - 0.8799 == 0.0321
  [2] 0.718 - 0.6317 == 0.0867
  [3] 0.574 - 0.4626 == 0.1114
  [4] 0.105 - 0.0435 == 0.0611
  
  [ FAIL 4 | WARN 202 | SKIP 11 | PASS 255 ]
  Error: Test failures
  Execution halted