Running ‘testthat.R’ [22m/26m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > test_check("Cyclops")
  Loading required package: Cyclops
  Sorting outcomes by stratumId and rowId
  Sorting covariates by covariateId, stratumId, and rowId
  Sorting outcomes by stratumId and rowId
  Sorting covariates by covariateId, stratumId, and rowId
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sparseness = 76.245 %
  Sorting covariates by covariateId, stratumId, and rowId
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sparseness = 75.76 %
  Sorting covariates by covariateId and rowId
  Sparseness = 98.96 %
  Sorting covariates by covariateId and rowId
  Sorting covariates by covariateId and rowId
  Sparseness = 99.012 %
  Sorting covariates by covariateId and rowId
  Sparseness = 99.012 %
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sparseness = 75.61 %
  Sorting covariates by covariateId and rowId
  Sparseness = 75.68 %
  Sorting covariates by covariateId and rowId
  Sparseness = 74.8 %
  Sorting covariates by covariateId and rowId
  Sparseness = 76.3 %
  Sorting covariates by covariateId and rowId
  Sparseness = 99.012 %
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Generating censoring weights
  Generating censoring weights
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sparseness = 98.0118 %
  Sorting covariates by covariateId and rowId
  Using cross-validation selector type byRow
  Performing 10-fold cross-validation [seed = 123] with data partitions of sizes 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000
  Using 1 thread(s)
  Starting var = 0.1
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #1 Rep #1 pred log like = -349.568
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #2 Rep #1 pred log like = -357.246
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #3 Rep #1 pred log like = -361.619
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #4 Rep #1 pred log like = -340.238
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #5 Rep #1 pred log like = -385.792
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #6 Rep #1 pred log like = -361.976
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #7 Rep #1 pred log like = -357.375
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #8 Rep #1 pred log like = -326.665
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #9 Rep #1 pred log like = -356.866
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #10 Rep #1 pred log like = -326.484
  AvgPred = -352.383 with stdev = 16.8814
  Completed at 0.1
  Next point at 1 with value 0 and continue = 1
  search[ 0.1 ] = -352.383(16.8814)
  
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #1 Rep #1 pred log like = -350.394
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #2 Rep #1 pred log like = -357.987
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #3 Rep #1 pred log like = -363.572
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #4 Rep #1 pred log like = -341.356
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #5 Rep #1 pred log like = -386.682
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #6 Rep #1 pred log like = -362.898
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #7 Rep #1 pred log like = -357.66
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #8 Rep #1 pred log like = -327.022
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #9 Rep #1 pred log like = -359.223
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #10 Rep #1 pred log like = -329.335
  AvgPred = -353.613 with stdev = 16.7422
  Completed at 1
  Next point at 0.01 with value 0 and continue = 1
  search[ 0.1 ] = -352.383(16.8814)
  search[ 1 ] = -353.613(16.7422)
  
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #1 Rep #1 pred log like = -348.651
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #2 Rep #1 pred log like = -359.281
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #3 Rep #1 pred log like = -360.345
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #4 Rep #1 pred log like = -338.394
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #5 Rep #1 pred log like = -385.741
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #6 Rep #1 pred log like = -361.185
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #7 Rep #1 pred log like = -358.465
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #8 Rep #1 pred log like = -326.693
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #9 Rep #1 pred log like = -355.495
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #10 Rep #1 pred log like = -326.132
  AvgPred = -352.038 with stdev = 17.0453
  Completed at 0.01
  Next point at 0.001 with value 0 and continue = 1
  search[ 0.01 ] = -352.038(17.0453)
  search[ 0.1 ] = -352.383(16.8814)
  search[ 1 ] = -353.613(16.7422)
  
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #1 Rep #1 pred log like = -357.318
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #2 Rep #1 pred log like = -365.169
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #3 Rep #1 pred log like = -360.553
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #4 Rep #1 pred log like = -343.886
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #5 Rep #1 pred log like = -389.719
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #6 Rep #1 pred log like = -362.072
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #7 Rep #1 pred log like = -357.888
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #8 Rep #1 pred log like = -328.721
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #9 Rep #1 pred log like = -357.338
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #10 Rep #1 pred log like = -334.322
  AvgPred = -355.699 with stdev = 16.2655
  Completed at 0.001
  Next point at 0.055317 with value -351.835 and continue = 0
  search[ 0.001 ] = -355.699(16.2655)
  search[ 0.01 ] = -352.038(17.0453)
  search[ 0.1 ] = -352.383(16.8814)
  search[ 1 ] = -353.613(16.7422)
  
  
  Maximum predicted log likelihood (-351.835) estimated at:
  	0.055317 (variance)
  	6.01292 (lambda)
  
  Fitting model at optimal hyperparameter
  Using prior: Laplace(6.01292) None 
  Using cross-validation selector type byRow
  Performing 10-fold cross-validation [seed = 1615966968] with data partitions of sizes 1 1 1 1 1 1 1 1 1 0
  Using 1 thread(s)
  Starting var = 0.333333 (default)
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #1 Rep #1 pred log like = 79.8291
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #2 Rep #1 pred log like = 20.3427
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #3 Rep #1 pred log like = 59.4911
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #4 Rep #1 pred log like = 14.674
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #5 Rep #1 pred log like = 33.625
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #6 Rep #1 pred log like = 44.5701
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #7 Rep #1 pred log like = 24.9454
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #8 Rep #1 pred log like = 112.869
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #9 Rep #1 pred log like = 106.597
  Running at Laplace(2.44949) None  Grid-point #1 at 0.333333 	Fold #10 Rep #1 pred log like = 0
  AvgPred = 49.6944 with stdev = 36.9967
  Completed at 0.333333
  Next point at 3.33333 with value 0 and continue = 1
  search[ 0.333333 ] = 49.6944(36.9967)
  
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #1 Rep #1 pred log like = 79.7695
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #2 Rep #1 pred log like = 20.3443
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #3 Rep #1 pred log like = 57.3442
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #4 Rep #1 pred log like = 14.5878
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #5 Rep #1 pred log like = 32.8915
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #6 Rep #1 pred log like = 44.6337
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #7 Rep #1 pred log like = 24.7929
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #8 Rep #1 pred log like = 110.219
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #9 Rep #1 pred log like = 106.149
  Running at Laplace(0.774597) None  Grid-point #2 at 3.33333 	Fold #10 Rep #1 pred log like = 0
  AvgPred = 49.0732 with stdev = 36.4706
  Completed at 3.33333
  Next point at 0.0333333 with value 0 and continue = 1
  search[ 0.333333 ] = 49.6944(36.9967)
  search[ 3.33333 ] = 49.0732(36.4706)
  
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #1 Rep #1 pred log like = 79.6334
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #2 Rep #1 pred log like = 20.3273
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #3 Rep #1 pred log like = 60.6085
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #4 Rep #1 pred log like = 15.7524
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #5 Rep #1 pred log like = 34.0061
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #6 Rep #1 pred log like = 43.169
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #7 Rep #1 pred log like = 25.0614
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #8 Rep #1 pred log like = 118.442
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #9 Rep #1 pred log like = 107.806
  Running at Laplace(7.74597) None  Grid-point #3 at 0.0333333 	Fold #10 Rep #1 pred log like = 0
  AvgPred = 50.4806 with stdev = 38.0683
  Completed at 0.0333333
  Next point at 0.00333333 with value 0 and continue = 1
  search[ 0.0333333 ] = 50.4806(38.0683)
  search[ 0.333333 ] = 49.6944(36.9967)
  search[ 3.33333 ] = 49.0732(36.4706)
  
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #1 Rep #1 pred log like = 79.0526
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #2 Rep #1 pred log like = 19.9614
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #3 Rep #1 pred log like = 62.1884
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #4 Rep #1 pred log like = 16.8111
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #5 Rep #1 pred log like = 33.9945
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #6 Rep #1 pred log like = 42.498
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #7 Rep #1 pred log like = 25.4635
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #8 Rep #1 pred log like = 118.246
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #9 Rep #1 pred log like = 106.001
  Running at Laplace(24.4949) None  Grid-point #4 at 0.00333333 	Fold #10 Rep #1 pred log like = 0
  AvgPred = 50.4216 with stdev = 37.6865
  Completed at 0.00333333
  Next point at 0.00389718 with value 50.4732 and continue = 0
  search[ 0.00333333 ] = 50.4216(37.6865)
  search[ 0.0333333 ] = 50.4806(38.0683)
  search[ 0.333333 ] = 49.6944(36.9967)
  search[ 3.33333 ] = 49.0732(36.4706)
  
  
  Maximum predicted log likelihood (50.4732) estimated at:
  	0.00389718 (variance)
  	22.6537 (lambda)
  
  Fitting model at optimal hyperparameter
  Using prior: Laplace(22.6537) None 
  Sparseness = 80.112 %
  Sorting covariates by covariateId, stratumId, and rowId
  Using cross-validation selector type byPid
  Performing 10-fold cross-validation [seed = 123] with data partitions of sizes 100 100 100 100 100 100 100 100 100 100
  Using 1 thread(s)
  Starting var = 0.1
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #1 Rep #1 pred log like = -13295.9
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #2 Rep #1 pred log like = -13263
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #3 Rep #1 pred log like = -12605.5
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #4 Rep #1 pred log like = -13658.8
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #5 Rep #1 pred log like = -14083.6
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #6 Rep #1 pred log like = -12744.5
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #7 Rep #1 pred log like = -12703.9
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #8 Rep #1 pred log like = -13704.7
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #9 Rep #1 pred log like = -13836.7
  Running at Laplace(4.47214) None  Grid-point #1 at 0.1 	Fold #10 Rep #1 pred log like = -14810.3
  AvgPred = -13470.7 with stdev = 658.166
  Completed at 0.1
  Next point at 1 with value 0 and continue = 1
  search[ 0.1 ] = -13470.7(658.166)
  
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #1 Rep #1 pred log like = -13295.9
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #2 Rep #1 pred log like = -13263
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #3 Rep #1 pred log like = -12605.4
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #4 Rep #1 pred log like = -13658.8
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #5 Rep #1 pred log like = -14083.6
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #6 Rep #1 pred log like = -12744.5
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #7 Rep #1 pred log like = -12704
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #8 Rep #1 pred log like = -13704.7
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #9 Rep #1 pred log like = -13836.7
  Running at Laplace(1.41421) None  Grid-point #2 at 1 	Fold #10 Rep #1 pred log like = -14810.3
  AvgPred = -13470.7 with stdev = 658.169
  Completed at 1
  Next point at 0.01 with value 0 and continue = 1
  search[ 0.1 ] = -13470.7(658.166)
  search[ 1 ] = -13470.7(658.169)
  
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #1 Rep #1 pred log like = -13295.8
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #2 Rep #1 pred log like = -13262.9
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #3 Rep #1 pred log like = -12605.6
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #4 Rep #1 pred log like = -13658.8
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #5 Rep #1 pred log like = -14083.4
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #6 Rep #1 pred log like = -12744.4
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #7 Rep #1 pred log like = -12703.9
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #8 Rep #1 pred log like = -13704.6
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #9 Rep #1 pred log like = -13836.6
  Running at Laplace(14.1421) None  Grid-point #3 at 0.01 	Fold #10 Rep #1 pred log like = -14810.2
  AvgPred = -13470.6 with stdev = 658.13
  Completed at 0.01
  Next point at 0.001 with value 0 and continue = 1
  search[ 0.01 ] = -13470.6(658.13)
  search[ 0.1 ] = -13470.7(658.166)
  search[ 1 ] = -13470.7(658.169)
  
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #1 Rep #1 pred log like = -13295.7
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #2 Rep #1 pred log like = -13262.7
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #3 Rep #1 pred log like = -12606.1
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #4 Rep #1 pred log like = -13658.8
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #5 Rep #1 pred log like = -14083.2
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #6 Rep #1 pred log like = -12744.1
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #7 Rep #1 pred log like = -12703.7
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #8 Rep #1 pred log like = -13704.5
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #9 Rep #1 pred log like = -13836.6
  Running at Laplace(44.7214) None  Grid-point #4 at 0.001 	Fold #10 Rep #1 pred log like = -14809.9
  AvgPred = -13470.5 with stdev = 658.026
  Completed at 0.001
  Next point at 0.0001 with value 0 and continue = 1
  search[ 0.001 ] = -13470.5(658.026)
  search[ 0.01 ] = -13470.6(658.13)
  search[ 0.1 ] = -13470.7(658.166)
  search[ 1 ] = -13470.7(658.169)
  
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #1 Rep #1 pred log like = -13295.3
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #2 Rep #1 pred log like = -13262.2
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #3 Rep #1 pred log like = -12607.1
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #4 Rep #1 pred log like = -13659.1
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #5 Rep #1 pred log like = -14082.8
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #6 Rep #1 pred log like = -12743.4
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #7 Rep #1 pred log like = -12703.2
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #8 Rep #1 pred log like = -13704.5
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #9 Rep #1 pred log like = -13836.7
  Running at Laplace(141.421) None  Grid-point #5 at 0.0001 	Fold #10 Rep #1 pred log like = -14809.4
  AvgPred = -13470.4 with stdev = 657.942
  Completed at 0.0001
  Next point at 1e-05 with value 0 and continue = 1
  search[ 0.0001 ] = -13470.4(657.942)
  search[ 0.001 ] = -13470.5(658.026)
  search[ 0.01 ] = -13470.6(658.13)
  search[ 0.1 ] = -13470.7(658.166)
  search[ 1 ] = -13470.7(658.169)
  
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #1 Rep #1 pred log like = -13296
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #2 Rep #1 pred log like = -13262.2
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #3 Rep #1 pred log like = -12610
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #4 Rep #1 pred log like = -13659.6
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #5 Rep #1 pred log like = -14081.2
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #6 Rep #1 pred log like = -12744.9
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #7 Rep #1 pred log like = -12705.9
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #8 Rep #1 pred log like = -13704.1
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #9 Rep #1 pred log like = -13838.2
  Running at Laplace(447.214) None  Grid-point #6 at 1e-05 	Fold #10 Rep #1 pred log like = -14810.3
  AvgPred = -13471.2 with stdev = 657.182
  Completed at 1e-05
  Next point at 0.00688313 with value -13470.5 and continue = 0
  search[ 1e-05 ] = -13471.2(657.182)
  search[ 0.0001 ] = -13470.4(657.942)
  search[ 0.001 ] = -13470.5(658.026)
  search[ 0.01 ] = -13470.6(658.13)
  search[ 0.1 ] = -13470.7(658.166)
  search[ 1 ] = -13470.7(658.169)
  
  
  Maximum predicted log likelihood (-13470.5) estimated at:
  	0.00688313 (variance)
  	17.046 (lambda)
  
  Fitting model at optimal hyperparameter
  Using prior: Laplace(17.046) None 
  Sparseness = 80.112 %
  Sorting outcomes by stratumId, time (descending), y and rowId
  Sorting covariates by covariateId, stratumId, time (descending), y, and rowId
  Sparseness = 99.09 %
  Sorting covariates by covariateId and rowId
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  ● Current not working (1)
  ● On CRAN (4)
  ● empty test (5)
  ● for debugging purposes; simulation takes too long (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (test-survfit.R:27:5): Check very small Cox example with no ties, breslow baseline ──
  goldSurv$surv not equal to cyclopsSurv$surv.
  7/7 mismatches (average diff: 0.118)
  [1] 0.9423 - 0.8922 == 0.0500
  [2] 0.9423 - 0.8922 == 0.0500
  [3] 0.8785 - 0.7802 == 0.0983
  [4] 0.7811 - 0.6228 == 0.1583
  [5] 0.7811 - 0.6228 == 0.1583
  [6] 0.5840 - 0.3567 == 0.2273
  [7] 0.0964 - 0.0113 == 0.0851
  ── Failure (test-survfit.R:51:5): Check very small Cox example with time-ties, but no failure ties, breslow baseline ──
  goldSurv$surv not equal to cyclopsSurv$surv.
  4/4 mismatches (average diff: 0.0174)
  [1] 0.865 - 0.874 == -0.0086
  [2] 0.698 - 0.716 == -0.0174
  [3] 0.505 - 0.529 == -0.0242
  [4] 0.131 - 0.151 == -0.0196
  ── Failure (test-survfit.R:73:5): Check very small Cox example with failure ties, no risk-set contribution after tie, breslow baseline ──
  goldSurv$surv not equal to cyclopsSurv$surv.
  3/3 mismatches (average diff: 0.0615)
  [1] 0.679 - 0.621 == 0.0578
  [2] 0.524 - 0.451 == 0.0724
  [3] 0.156 - 0.102 == 0.0543
  ── Failure (test-survfit.R:96:5): Check very small Cox example with failure ties, with risk-set contribution after tie, breslow baseline ──
  goldSurv$surv not equal to cyclopsSurv$surv.
  4/4 mismatches (average diff: 0.0728)
  [1] 0.912 - 0.8799 == 0.0321
  [2] 0.718 - 0.6317 == 0.0867
  [3] 0.574 - 0.4626 == 0.1114
  [4] 0.105 - 0.0435 == 0.0611
  
  [ FAIL 4 | WARN 202 | SKIP 11 | PASS 255 ]
  Error: Test failures
  Execution halted