Error(s) in re-building vignettes:
--- re-building 'Ch_analysing_longitudinal_dataI.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_analysing_longitudinal_dataI.Rnw'

--- re-building 'Ch_analysing_longitudinal_dataII.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
--- finished re-building 'Ch_analysing_longitudinal_dataII.Rnw'

--- re-building 'Ch_analysis_of_variance.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_analysis_of_variance.Rnw'

--- re-building 'Ch_cluster_analysis.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
Package 'mclust' version 5.4.7
Type 'citation("mclust")' for citing this R package in publications.

Attaching package: 'mvtnorm'

The following object is masked from 'package:mclust':

    dmvnorm

--- finished re-building 'Ch_cluster_analysis.Rnw'

--- re-building 'Ch_conditional_inference.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
Loading required package: survival
Warning in chisq.test(suicides) :
  Chi-squared approximation may be incorrect
Warning in approximate(B = 19999) :
  'B' is deprecated; use 'nresample' instead
--- finished re-building 'Ch_conditional_inference.Rnw'

--- re-building 'Ch_density_estimation.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: lattice

Attaching package: 'boot'

The following object is masked from 'package:flexmix':

    boot

The following object is masked from 'package:lattice':

    melanoma

Package 'mclust' version 5.4.7
Type 'citation("mclust")' for citing this R package in publications.
Warning in sub(object$syntax$docexpr, val, chunk[pos[1L]]) :
  argument 'replacement' has length > 1 and only the first element will be used
--- finished re-building 'Ch_density_estimation.Rnw'

--- re-building 'Ch_errata.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_errata.Rnw'

--- re-building 'Ch_introduction_to_R.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_introduction_to_R.Rnw'

--- re-building 'Ch_logistic_regression_glm.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
--- finished re-building 'Ch_logistic_regression_glm.Rnw'

--- re-building 'Ch_meta_analysis.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_meta_analysis.Rnw'

--- re-building 'Ch_multidimensional_scaling.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
Warning in cmdscale(watervoles, k = 13, eig = TRUE) :
  only 7 of the first 13 eigenvalues are > 0
--- finished re-building 'Ch_multidimensional_scaling.Rnw'

--- re-building 'Ch_multiple_linear_regression.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"D:\compiler\texmf\miktex\bin\texify.exe" --quiet --pdf "Ch_multiple_linear_regression.tex" --max-iterations=20 -I "D:/RCompile/recent/R/share/texmf/tex/latex" -I "D:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'Ch_multiple_linear_regression.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'Ch_multiple_linear_regression.pdf' for vignette with name 'Ch_multiple_linear_regression' and engine 'utils::Sweave'. The following files exist in working directory 'd:\RCompile\CRANpkg\local\4.1\HSAUR.Rcheck\vign_test\HSAUR\vignettes': 'Ch_analysing_longitudinal_dataI.Rnw' (10386 bytes), 'Ch_analysing_longitudinal_dataI.aux' (2186 bytes), 'Ch_analysing_longitudinal_dataI.bbl' (911 bytes), 'Ch_analysing_longitudinal_dataI.blg' (179 bytes), 'Ch_analysing_longitudinal_dataI.log' (43339 bytes), 'Ch_analysing_longitudinal_dataI.out' (268 bytes), 'Ch_analysing_longitudinal_dataI.pdf' (196063 bytes), 'Ch_analysing_longitudinal_dataI.tex' (12032 bytes), 'Ch_analysing_longitudinal_dataII.Rnw' (16789 bytes), 'Ch_analysing_longitudinal_dataII.aux' (4942 bytes), 'Ch_analysing_longitudinal_dataII.bbl' (559 bytes), 'Ch_analysing_longitudinal_dataII.blg' (180 bytes), 'Ch_analysing_longitudinal_dataII.log' (43732 bytes), 'Ch_analysing_longitudinal_dataII.out' (274 bytes), 'Ch_analysing_longitudinal_dataII.pdf' (229027 bytes), 'Ch_analysing_longitudinal_dataII.tex' (28544 bytes), 'Ch_analysis_of_variance.Rnw' (18280 bytes), 'Ch_analysis_of_variance.aux' (3942 bytes), 'Ch_analysis_of_variance.bbl' (1134 bytes), 'Ch_analysis_of_variance.blg' (171 bytes), 'Ch_analysis_of_variance.log' (45502 bytes), 'Ch_analysis_of_variance.out' (245 bytes), 'Ch_analysis_of_variance.pdf' (289236 bytes), 'Ch_analysis_of_variance.tex' (24259 bytes), 'Ch_cluster_analysis.Rnw' (12388 bytes), 'Ch_cluster_analysis.aux' (3301 bytes), 'Ch_cluster_analysis.bbl' (831 bytes), 'Ch_cluster_analysis.blg' (167 bytes), 'Ch_cluster_analysis.log' (44937 bytes), 'Ch_cluster_analysis.out' (244 bytes), 'Ch_cluster_analysis.pdf' (254204 bytes), 'Ch_cluster_analysis.tex' (13227 bytes), 'Ch_conditional_inference.Rnw' (14768 bytes), 'Ch_conditional_inference.aux' (3120 bytes), 'Ch_conditional_inference.log' (43294 bytes), 'Ch_conditional_inference.out' (253 bytes), 'Ch_conditional_inference.pdf' (218287 bytes), 'Ch_conditional_inference.tex' (17263 bytes), 'Ch_density_estimation.Rnw' (18555 bytes), 'Ch_density_estimation.aux' (4957 bytes), 'Ch_density_estimation.bbl' (1656 bytes), 'Ch_density_estimation.blg' (169 bytes), 'Ch_density_estimation.log' (46301 bytes), 'Ch_density_estimation.out' (241 bytes), 'Ch_density_estimation.pdf' (438198 bytes), 'Ch_density_estimation.tex' (20072 bytes), 'Ch_errata.Rnw' (11541 bytes), 'Ch_errata.aux' (2817 bytes), 'Ch_errata.bbl' (1143 bytes), 'Ch_errata.blg' (157 bytes), 'Ch_errata.log' (42023 bytes), 'Ch_errata.out' (1137 bytes), 'Ch_errata.pdf' (186966 bytes), 'Ch_errata.tex' (10707 bytes), 'Ch_introduction_to_R.Rnw' (47334 bytes), 'Ch_introduction_to_R.aux' (5148 bytes), 'Ch_introduction_to_R.bbl' (3235 bytes), 'Ch_introduction_to_R.blg' (168 bytes), 'Ch_introduction_to_R.log' (45729 bytes), 'Ch_introduction_to_R.out' (643 bytes), 'Ch_introduction_to_R.pdf' (382681 bytes), 'Ch_introduction_to_R.tex' (53203 bytes), 'Ch_logistic_regression_glm.Rnw' (19982 bytes), 'Ch_logistic_regression_glm.aux' (5097 bytes), 'Ch_logistic_regression_glm.bbl' (486 bytes), 'Ch_logistic_regression_glm.blg' (174 bytes), 'Ch_logistic_regression_glm.log' (45686 bytes), 'Ch_logistic_regression_glm.out' (303 bytes), 'Ch_logistic_regression_glm.pdf' (306011 bytes), 'Ch_logistic_regression_glm.tex' (24683 bytes), 'Ch_meta_analysis.Rnw' (13970 bytes), 'Ch_meta_analysis.aux' (3773 bytes), 'Ch_meta_analysis.log' (44318 bytes), 'Ch_meta_analysis.out' (390 bytes), 'Ch_meta_analysis.pdf' (258420 bytes), 'Ch_meta_analysis.tex' (17215 bytes), 'Ch_multidimensional_scaling.Rnw' (10570 bytes), 'Ch_multidimensional_scaling.aux' (3053 bytes), 'Ch_multidimensional_scaling.bbl' (760 bytes), 'Ch_multidimensional_scaling.blg' (175 bytes), 'Ch_multidimensional_scaling.log' (44103 bytes), 'Ch_multidimensional_scaling.out' (260 bytes), 'Ch_multidimensional_scaling.pdf' (206596 bytes), 'Ch_multidimensional_scaling.tex' (10352 bytes), 'Ch_multiple_linear_regression.Rnw' (14075 bytes), 'Ch_multiple_linear_regression.tex' (17279 bytes), 'Ch_principal_components_analysis.Rnw' (12135 bytes), 'Ch_recursive_partitioning.Rnw' (18771 bytes), 'Ch_simple_inference.Rnw' (19318 bytes), 'Ch_survival_analysis.Rnw' (15012 bytes), 'Forbes2000.csv' (159986 bytes), 'Forbes2000.rda' (53468 bytes), 'Rplots.pdf' (3448 bytes), 'chapman.cls' (30107 bytes), 'preface.Rnw' (11065 bytes)
--- failed re-building 'Ch_multiple_linear_regression.Rnw'

--- re-building 'Ch_principal_components_analysis.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_principal_components_analysis.Rnw'

--- re-building 'Ch_recursive_partitioning.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
Loading required package: grid
randomForest 4.6-14
Type rfNews() to see new features/changes/bug fixes.
Loading required package: mvtnorm
Loading required package: modeltools
Loading required package: stats4
Loading required package: strucchange
Loading required package: zoo

Attaching package: 'zoo'

The following objects are masked from 'package:base':

    as.Date, as.Date.numeric

Loading required package: sandwich
--- finished re-building 'Ch_recursive_partitioning.Rnw'

--- re-building 'Ch_simple_inference.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
Loading required package: grid
Warning in wilcox.test.default(mooringdiff) :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(mooringdiff) :
  cannot compute exact p-value with ties
--- finished re-building 'Ch_simple_inference.Rnw'

--- re-building 'Ch_survival_analysis.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
Loading required package: grid
Loading required package: mvtnorm
Loading required package: modeltools
Loading required package: stats4
Loading required package: strucchange
Loading required package: zoo

Attaching package: 'zoo'

The following objects are masked from 'package:base':

    as.Date, as.Date.numeric

Loading required package: sandwich
Warning in plot.window(...) : "legend.bty" is not a graphical parameter
Warning in plot.window(...) :
  "legend.text" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "legend.bty" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "legend.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "legend.bty" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "legend.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "legend.bty" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "legend.text" is not a graphical parameter
Warning in box(...) : "legend.bty" is not a graphical parameter
Warning in box(...) : "legend.text" is not a graphical parameter
Warning in title(...) : "legend.bty" is not a graphical parameter
Warning in title(...) : "legend.text" is not a graphical parameter
Warning in approximate(B = 10000) :
  'B' is deprecated; use 'nresample' instead
--- finished re-building 'Ch_survival_analysis.Rnw'

--- re-building 'preface.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'preface.Rnw'

SUMMARY: processing the following file failed:
  'Ch_multiple_linear_regression.Rnw'

Error: Vignette re-building failed.
Execution halted