Error(s) in re-building vignettes:
  ...
--- re-building ‘LIM.Rnw’ using Sweave
Error: processing vignette 'LIM.Rnw' failed with diagnostics:
Running ‘texi2dvi’ on ‘LIM.tex’ failed.
LaTeX errors:
! Undefined control sequence.
<recently read> \Hy@colorlink 
                              
l.107 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.107 \begin{document}
                      
! Undefined control sequence.
<recently read> \Hy@colorlink 
                              
l.107 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.107 \begin{document}
                      
! Undefined control sequence.
<recently read> \Hy@colorlink 
                              
l.107 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.107 \begin{document}
                      
! Undefined control sequence.
<recently read> \Hy@colorlink 
                              
l.107 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.107 \begin{document}
                      
--- failed re-building ‘LIM.Rnw’

--- re-building ‘LIMecoli.Rnw’ using Sweave
Loading required package: limSolve
Loading required package: diagram
Loading required package: shape
Warning in lsei(E = E, F = F, G = G, H = H) :
  No equalities - setting type = 2
Error: processing vignette 'LIMecoli.Rnw' failed with diagnostics:
Running ‘texi2dvi’ on ‘LIMecoli.tex’ failed.
LaTeX errors:
! Undefined control sequence.
<recently read> \Hy@colorlink 
                              
l.102 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.102 \begin{document}
                      
! Undefined control sequence.
<recently read> \Hy@colorlink 
                              
l.102 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.102 \begin{document}
                      
! Undefined control sequence.
<recently read> \Hy@colorlink 
                              
l.102 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.102 \begin{document}
                      
! Undefined control sequence.
<recently read> \Hy@colorlink 
                              
l.102 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.102 \begin{document}
                      
! Undefined control sequence.
<recently read> \Hy@colorlink 
                              
l.102 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.102 \begin{document}
                      
! Undefined control sequence.
<recently read> \Hy@colorlink 
                              
l.102 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.102 \begin{document}
                      
! Undefined control sequence.
\hyper@linkurl ...tionraw >>}\relax \Hy@colorlink 
                                                  \@urlcolor #1\Hy@xspace@en...
l.102 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.102 \begin{document}
                      
! Undefined control sequence.
\hyper@linkurl ...tionraw >>}\relax \Hy@colorlink 
                                                  \@urlcolor #1\Hy@xspace@en...
l.102 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.102 \begin{document}
                      
! Undefined control sequence.
<recently read> \Hy@colorlink 
                              
l.102 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.102 \begin{document}
                      
! Undefined control sequence.
<recently read> \Hy@colorlink 
                              
l.102 \begin{document}
                      
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink 
                                  \Hy@VerboseLinkStop \pdfendlink 
l.102 \begin{document}
                      
--- failed re-building ‘LIMecoli.Rnw’

SUMMARY: processing the following files failed:
  ‘LIM.Rnw’ ‘LIMecoli.Rnw’

Error: Vignette re-building failed.
Execution halted