Error(s) in re-building vignettes:
  ...
--- re-building ‘ctsem.rnw’ using knitr
Observations with missing time information found - removing 1 rows
Discrete time points created:  4
Extracting first non-missing value for time independent predictors
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
wide format data detected
Running ctsemCarefulFit with 16 parameters
Running ctsem with 16 parameters

Beginning initial fit attempt
Running ctsem with 16 parameters

 Lowest minimum so far:  4345.85436626721
 OpenMx status code 6 not in list of acceptable status codes, (0,0)
 Not all eigenvalues of the Hessian are positive: 2265877167.45618, 858622.535865752, 174432.374425837, 106332.534634008, 2404.14338576438, 1515.26892105873, 753.957929903672, 422.941617599806, 337.304847207439, 81.3529720557753, 71.7746562810274, 0.270877616891719, 0.000990003447345578, 0.0000778436209684442, -0.000035198219867717, -141.434381947167

Beginning fit attempt 1 of at maximum 5 extra tries
Running ctsem with 16 parameters

 Lowest minimum so far:  4345.60004760687
 OpenMx status code 6 not in list of acceptable status codes, (0,0)
 Not all eigenvalues of the Hessian are positive: 3354490876.29145, 1093934.98802932, 187673.884971439, 126959.941626984, 2424.15607707378, 1121.16759261386, 889.86154421705, 338.802563830431, 327.364644085503, 131.251443572662, 80.354787688875, 0.177615554581881, 0.000850405277234094, 0.0000352862941430477, -0.000234931837912, -60.4440819646513

Beginning fit attempt 2 of at maximum 5 extra tries
Running ctsem with 16 parameters

 Lowest minimum so far:  4344.92817213696
 OpenMx status code 6 not in list of acceptable status codes, (0,0)
 Not all eigenvalues of the Hessian are positive: 12821437818.2582, 3997399.34344556, 490457.836528037, 325096.253015783, 2396.76518858563, 1522.09886943861, 670.107546833218, 384.188877072761, 336.76799528395, 81.3333621935671, 40.8078275639537, 25.4096092022785, 0.0335353726097448, 0.00230352964943181, -0.000927314217301221, -0.00225563653992078

Beginning fit attempt 3 of at maximum 5 extra tries
Running ctsem with 16 parameters

 Fit attempt worse than current best:  4599.21145593635 vs 4344.92817213696

Beginning fit attempt 4 of at maximum 5 extra tries
Running ctsem with 16 parameters

 Fit attempt worse than current best:  4364.34553579234 vs 4344.92817213696

Beginning fit attempt 5 of at maximum 5 extra tries
Running ctsem with 16 parameters

 Lowest minimum so far:  4190.79777582726

Retry limit reached

Solution found


 Solution found!  Final fit=4190.7978 (started at 4727.4692)  (6 attempt(s): 6 valid, 0 errors)

wide format data detected
Running ctsemCarefulFit with 15 parameters
Running ctsem with 15 parameters

Beginning initial fit attempt
Running ctsem with 15 parameters

 Lowest minimum so far:  4196.73541494076

Solution found


 Solution found!  Final fit=4196.7354 (started at 4882.1499)  (1 attempt(s): 1 valid, 0 errors)

NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 16 parameters
Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
wide format data detected
Running ctsemCarefulFit with 19 parameters
Running ctsem with 19 parameters

Beginning initial fit attempt
Running ctsem with 19 parameters

 Lowest minimum so far:  4151.13132113271

Solution found


 Solution found!  Final fit=4151.1313 (started at 4301.6568)  (1 attempt(s): 1 valid, 0 errors)

Plotting fit
Plotting fit
Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
wide format data detected
Running ctsemCarefulFit with 23 parameters
Running ctsem with 23 parameters

Beginning initial fit attempt
Running ctsem with 23 parameters

 Lowest minimum so far:  4245.25700751421

Solution found


 Solution found!  Final fit=4245.257 (started at 4370.0907)  (1 attempt(s): 1 valid, 0 errors)

Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
Some free parameters in matrices set to zero!
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
Some free parameters in matrices set to zero!
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
Some free parameters in matrices set to zero!
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
Some free parameters in matrices set to zero!
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
wide format data detected
No missing time dependent predictors - TDPREDVAR and TDPREDMEANS fixed to observed moments for speed
Running ctsemCarefulFit with 18 parameters
Running ctsem with 18 parameters

Beginning initial fit attempt
Running ctsem with 18 parameters

 Lowest minimum so far:  -461.763330928791

Solution found


 Solution found!  Final fit=-461.76333 (started at -404.21165)  (1 attempt(s): 1 valid, 0 errors)

Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
wide format data detected
No missing time dependent predictors - TDPREDVAR and TDPREDMEANS fixed to observed moments for speed
transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.
Running ctsemCarefulFit with 18 parameters
Running ctsem with 18 parameters

Beginning initial fit attempt
Running ctsem with 18 parameters

 Lowest minimum so far:  -456.192135641282

Solution found


 Solution found!  Final fit=-456.19214 (started at 91.449557)  (1 attempt(s): 1 valid, 0 errors)

Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
wide format data detected
Single subject dataset or Kalman objective specified - ignoring any specified between subject 
      variance matrices (TRAITVAR, T0TRAITEFFECT,MANIFESTTRAITVAR, TIPREDEFFECT, TIPREDVAR, TDTIPREDCOV, T0TIPREDEFFECT)
Running ctsemCarefulFit with 11 parameters
Running ctsem with 11 parameters

Beginning initial fit attempt
Running ctsem with 11 parameters

 Lowest minimum so far:  -138.198676577172

Solution found


 Solution found!  Final fit=-138.19868 (started at 670.38458)  (1 attempt(s): 1 valid, 0 errors)

Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
Begin carefulFit start value estimation for group g1
Begin carefulFit start value estimation for group g2
Running ctsem multigroup with 13 parameters

Beginning initial fit attempt
Running ctsem multigroup with 13 parameters

 Lowest minimum so far:  -109.136426537257

Solution found


 Solution found!  Final fit=-109.13643 (started at 6182.4813)  (1 attempt(s): 1 valid, 0 errors)

Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
Some free parameters in matrices set to zero!
Discrete time points created:  200
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Plotting rows 1, 
Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
wide format data detected
Single subject dataset or Kalman objective specified - ignoring any specified between subject 
      variance matrices (TRAITVAR, T0TRAITEFFECT,MANIFESTTRAITVAR, TIPREDEFFECT, TIPREDVAR, TDTIPREDCOV, T0TIPREDEFFECT)
transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.
Running ctsemCarefulFit with 7 parameters
Running ctsem with 7 parameters

Beginning initial fit attempt
Running ctsem with 7 parameters

 Lowest minimum so far:  750.518796542596

Solution found


 Solution found!  Final fit=750.5188 (started at 1246.0943)  (1 attempt(s): 1 valid, 0 errors)

Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
wide format data detected
transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.
Running ctsem with 9 parameters

Beginning initial fit attempt
Running ctsem with 9 parameters

 Lowest minimum so far:  -3462.1538949283

Solution found


 Solution found!  Final fit=-3462.1539 (started at -3145.5663)  (1 attempt(s): 1 valid, 0 errors)

wide format data detected
Running ctsem with 16 parameters

Beginning initial fit attempt
Running ctsem with 16 parameters

Solution found


 Solution found!  Final fit=4190.7978 (started at 4190.7978)  (1 attempt(s): 1 valid, 0 errors)

Type "omx" is still supported but requires ctsemOMX package installation. "stanct" or "standt" are recommended types.
wide format data detected
Running ctsemCarefulFit with 19 parameters
Running ctsem with 19 parameters

Beginning initial fit attempt
Running ctsem with 19 parameters

 Lowest minimum so far:  4151.13132113271

Solution found


 Solution found!  Final fit=4151.1313 (started at 4301.6569)  (1 attempt(s): 1 valid, 0 errors)

NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 19 parameters
wide format data detected
Running ctsemCarefulFit with 19 parameters
Running ctsem with 19 parameters

Beginning initial fit attempt
Running ctsem with 19 parameters

 Lowest minimum so far:  4203.31303537745

Solution found


 Solution found!  Final fit=4203.313 (started at 4349.5531)  (1 attempt(s): 1 valid, 0 errors)

NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 19 parameters
Error: processing vignette 'ctsem.rnw' failed with diagnostics:
Running ‘texi2dvi’ on ‘ctsem.tex’ failed.
LaTeX errors:
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                                  \Hy@VerboseLinkStop \pdfendlink 
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<recently read> \Hy@colorlink 
                              
l.130 \begin{document}
                      
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                                  \Hy@VerboseLinkStop \pdfendlink 
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<recently read> \Hy@colorlink 
                              
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                                  \Hy@VerboseLinkStop \pdfendlink 
l.130 \begin{document}
                      
--- failed re-building ‘ctsem.rnw’

SUMMARY: processing the following file failed:
  ‘ctsem.rnw’

Error: Vignette re-building failed.
Execution halted