Running ‘fit_node_no_new_edge.R’ [0s/1s]
  Running ‘loop_generate.R’ [0s/1s]
  Running ‘loop_joint_estimate.R’ [0s/1s]
  Running ‘loop_overall.R’ [0s/1s]
  Running ‘loop_test_Newman_Kong.R’ [0s/1s]
  Running ‘test_GenerateNet_final_padding.R’ [1s/3s]
  Running ‘test_GetStatistics_compress_2.R’ [1s/3s]
  Running ‘test_GetStatistics_undirected.R’ [2s/3s]
  Running ‘test_Newman_Kong.R’ [2s/4s]
  Running ‘test_cv_data.R’ [0s/1s]
  Running ‘test_from_igraph.R’ [1s/2s]
  Running ‘test_from_networkDynamic.R’ [1s/3s]
  Running ‘test_generate_net_no_new_node.R’ [1s/3s]
  Running ‘test_graph_from_file.R’ [1s/3s]
  Running ‘test_graph_to_file.R’ [1s/2s]
  Running ‘test_isolated_node_2.R’ [6s/9s]
  Running ‘test_joint_estimate.R’ [13s/15s]
  Running ‘test_only_A.R’ [2s/5s]
  Running ‘test_only_F.R’ [4s/7s]
  Running ‘test_overall.R’ [4s/7s]
  Running ‘test_plot_PAFit_net.R’ [1s/2s]
  Running ‘test_test_linear_PA.R’ [2s/3s]
  Running ‘test_to_igraph.R’ [2s/3s]
  Running ‘test_to_networkDynamic.R’ [2s/3s]
  Running ‘test_true_f.R’ [1s/2s]
  Running ‘test_variance_s.R’ [0s/1s]
Running the tests in ‘tests/test_from_networkDynamic.R’ failed.
Complete output:
  > library(PAFit)
  > 
  > 
  > net <- generate_BA(N = 100, multiple_node = 20, m = 1)
  > summary(net)
  An object of class PAFit_net containing a dynamic network
  Type: directed
  Number of unique time points: 6
  Number of nodes: 99
  Number of edges: 98
  
  The PA function is: 1, 1, 2, 3, 4, 5,...
  The node fitnesses are: 1, 1, 1, 1, 1, 1,...
  > system.time(b <- to_networkDynamic(net))
  Error in set.vertex.attribute(g, "na", rep(FALSE, n), 1:n) : 
    attempt to set index 0/0 in SET_VECTOR_ELT
  Calls: system.time ... as.network.matrix -> network.initialize -> set.vertex.attribute
  Timing stopped at: 0.013 0 0.039
  Execution halted
Running the tests in ‘tests/test_plot_PAFit_net.R’ failed.
Complete output:
  > 
  > 
  > library("PAFit")
  > net <- generate_BB(N = 100, multiple_node = 20, m = 1)
  > 
  > plot(net)
  Error in set.vertex.attribute(g, "na", rep(FALSE, n), 1:n) : 
    attempt to set index 0/0 in SET_VECTOR_ELT
  Calls: plot ... as.network.matrix -> network.initialize -> set.vertex.attribute
  Execution halted
Running the tests in ‘tests/test_to_networkDynamic.R’ failed.
Complete output:
  > 
  > 
  > library(PAFit)
  > net <- generate_BA(N = 100, multiple_node = 20, m = 1)
  > 
  > system.time(b <- to_networkDynamic(net))
  Error in set.vertex.attribute(g, "na", rep(FALSE, n), 1:n) : 
    attempt to set index 0/0 in SET_VECTOR_ELT
  Calls: system.time ... as.network.matrix -> network.initialize -> set.vertex.attribute
  Timing stopped at: 0.012 0 0.013
  Execution halted