Running ‘AAAtest-all.R’ [33s/35s]
  Running ‘HSAURtrees.R’ [3s/4s]
  Running ‘REMLdev.R’ [3s/3s]
  Running ‘ST.R’ [3s/3s]
  Running ‘agridat_gotway.R’ [5s/5s]
  Running ‘bootMer.R’ [8s/18s]
  Running ‘boundary.R’ [11s/11s]
  Running ‘confint.R’ [5s/6s]
  Running ‘devCritFun.R’ [3s/3s]
  Running ‘drop.R’ [4s/4s]
  Running ‘drop1contrasts.R’ [3s/4s]
  Running ‘dynload.R’ [0s/1s]
  Running ‘elston.R’ [3s/4s]
  Running ‘evalCall.R’ [3s/3s]
  Running ‘extras.R’ [3s/3s]
  Running ‘falsezero_dorie.R’ [3s/3s]
  Running ‘fewlevels.R’ [0s/1s]
  Running ‘getME.R’ [4s/4s]
  Running ‘glmer-1.R’ [5s/6s]
  Running ‘glmerControlPass.R’ [7s/8s]
  Running ‘glmerWarn.R’ [4s/5s]
  Running ‘glmmExt.R’ [9s/10s]
  Running ‘glmmWeights.R’ [9s/9s]
  Running ‘hatvalues.R’ [3s/3s]
  Running ‘is.R’ [3s/4s]
  Running ‘lmList-tst.R’ [3s/4s]
  Running ‘lme4_nlme.R’ [3s/3s]
  Running ‘lmer-0.R’ [3s/4s]
  Running ‘lmer-1.R’ [3s/3s]
  Comparing ‘lmer-1.Rout’ to ‘lmer-1.Rout.save’ ... OK
  Running ‘lmer-conv.R’ [3s/4s]
  Running ‘lmer2_ex.R’ [3s/3s]
  Running ‘methods.R’ [4s/5s]
  Running ‘minval.R’ [3s/3s]
  Running ‘modFormula.R’ [5s/5s]
  Running ‘nbinom.R’ [3s/3s]
  Running ‘nlmer-conv.R’ [3s/3s]
  Running ‘nlmer.R’ [3s/4s]
  Comparing ‘nlmer.Rout’ to ‘nlmer.Rout.save’ ... OK
  Running ‘offset.R’ [4s/5s]
  Running ‘optimizer.R’ [5s/6s]
  Running ‘polytomous.R’ [3s/3s]
  Running ‘prLogistic.R’ [3s/3s]
  Running ‘predict_basis.R’ [4s/4s]
  Running ‘predsim.R’ [4s/4s]
  Running ‘priorWeights.R’ [9s/9s]
  Running ‘priorWeightsModComp.R’ [5s/6s]
  Running ‘profile-tst.R’ [3s/4s]
  Running ‘refit.R’ [3s/3s]
  Running ‘resids.R’ [3s/4s]
  Running ‘respiratory.R’ [9s/10s]
  Running ‘simulate.R’ [3s/3s]
  Running ‘testOptControl.R’ [3s/4s]
  Running ‘testcolonizer.R’ [3s/4s]
  Running ‘testcrab.R’ [10s/11s]
  Running ‘throw.R’ [5s/5s]
  Running ‘varcorr.R’ [4s/4s]
  Running ‘vcov-etc.R’ [3s/3s]
Running the tests in ‘tests/AAAtest-all.R’ failed.
Complete output:
  > if(require("testthat", quietly = TRUE)) {
  +     pkg   <- "lme4"
  +     require(pkg, character.only=TRUE, quietly=TRUE)
  +     if(getRversion() < "3.5.0") { withAutoprint <- identity ; prt <- print } else { prt <- identity }
  +     if(Sys.getenv("USER") %in% c("maechler", "bbolker")) withAutoprint({
  +         ## for developers' sake:
  +         lP <- .libPaths() # ---- .libPaths() : ----
  +         prt(lP)
  +         ## ---- Entries in .libPaths()[1] : ----
  +         prt(list.files(lP[1], include.dirs=TRUE))
  +         prt(sessionInfo())
  +         prt(packageDescription("Matrix"))
  +         ## 'lme4' from packageDescription "file" :
  +         prt(attr(packageDescription("lme4"), "file"))
  +     })
  +     test_check(pkg)
  +     ##======== ^^^
  +     print(warnings()) # TODO? catch most of these by expect_warning(..)
  + } else {
  +     cat( "package 'testthat' not available, cannot run unit tests\n" )
  + }
  ══ Warnings ════════════════════════════════════════════════════════════════════
  ── Warning (???): lmerRank ─────────────────────────────────────────────────────
  qr2rankMatrix(.): QR has negative diag(R) entries
  Backtrace:
   1. lme4::lFormula(...)
   2. lme4:::chkRank.drop.cols(X, kind = rankX.chk, tol = 1e-07)
   3. Matrix::rankMatrix(X, tol = tol, method = method)
   5. Matrix::qr2rankMatrix(q.r, tol = tol, isBqr = x.dense, do.warn = warn.qr)
  ── Warning (???): glmerRank ────────────────────────────────────────────────────
  qr2rankMatrix(.): QR has negative diag(R) entries
  Backtrace:
   1. lme4::glFormula(formula = z ~ x + y + (1 | r), data = d, family = binomial)
   2. lme4:::chkRank.drop.cols(X, kind = rankX.chk, tol = 1e-07)
   3. Matrix::rankMatrix(X, tol = tol, method = method)
   5. Matrix::qr2rankMatrix(q.r, tol = tol, isBqr = x.dense, do.warn = warn.qr)
  ── Warning (???): ranksim ──────────────────────────────────────────────────────
  qr2rankMatrix(.): QR has negative diag(R) entries
  Backtrace:
   1. lme4::lFormula(...)
   2. lme4:::chkRank.drop.cols(X, kind = rankX.chk, tol = 1e-07)
   3. Matrix::rankMatrix(X, tol = tol, method = method)
   5. Matrix::qr2rankMatrix(q.r, tol = tol, isBqr = x.dense, do.warn = warn.qr)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (???): lmerRank ───────────────────────────────────────────────────────
  Error: Dropping columns failed to produce full column rank design matrix
  Backtrace:
      █
   1. └─lme4::lFormula(...)
   2.   └─lme4:::chkRank.drop.cols(X, kind = rankX.chk, tol = 1e-07)
  ── Error (???): glmerRank ──────────────────────────────────────────────────────
  Error: Dropping columns failed to produce full column rank design matrix
  Backtrace:
      █
   1. └─lme4::glFormula(formula = z ~ x + y + (1 | r), data = d, family = binomial)
   2.   └─lme4:::chkRank.drop.cols(X, kind = rankX.chk, tol = 1e-07)
  ── Error (???): ranksim ────────────────────────────────────────────────────────
  Error: Dropping columns failed to produce full column rank design matrix
  Backtrace:
      █
   1. └─lme4::lFormula(...)
   2.   └─lme4:::chkRank.drop.cols(X, kind = rankX.chk, tol = 1e-07)
  
  [ FAIL 3 | WARN 3 | SKIP 0 | PASS 579 ]
  Error: Test failures
  Execution halted