Running 'test-all.R' [412s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > Sys.setenv("R_TESTS" = "")
  > library(testthat)
  > test_check("zoon")
  Loading required package: zoon
  Loading required package: raster
  Loading required package: sp
  -- Skip (testChangeWorkflow.R:4:3): ChangeWorkflow errors ----------------------
  Reason: On CRAN
  
  -- Skip (testChangeWorkflow.R:32:3): Basic ChangeWorkflow works ----------------
  Reason: On CRAN
  
  -- Skip (testChangeWorkflow.R:153:3): ChangeWorkflow - Chains ------------------
  Reason: On CRAN
  
  -- Skip (testChangeWorkflow.R:230:3): ChangeWorkflow - Lists -------------------
  Reason: On CRAN
  
  -- Skip (testChangeWorkflow.R:298:3): More complex syntax in remaining modules w
  Reason: On CRAN
  
  -- Warning (testCombineRasters.R:80:3): Combinations of projections and extents 
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testCombineRasters.R:82:3): Combinations of projections and extents 
  input and ouput crs are the same
  
  -- Warning (testCombineRasters.R:82:3): Combinations of projections and extents 
  input and ouput crs are the same
  
  -- Warning (testCombineRasters.R:82:3): Combinations of projections and extents 
  input and ouput crs are the same
  
  -- Warning (testCombineRasters.R:82:3): Combinations of projections and extents 
  input and ouput crs are the same
  
  -- Warning (testCombineRasters.R:94:3): Test in workflows ----------------------
  CRS object has no comment
  
  -- Warning (testCombineRasters.R:94:3): Test in workflows ----------------------
  Discarded datum WGS_1984 in CRS definition,
   but +towgs84= values preserved
  
  -- Warning (testCombineRasters.R:94:3): Test in workflows ----------------------
  CRS object has no comment
  
  -- Warning (testCombineRasters.R:94:3): Test in workflows ----------------------
  Using PROJ not WKT2 strings
  
  -- Warning (testCombineRasters.R:94:3): Test in workflows ----------------------
  Using PROJ not WKT2 strings
  
  -- Warning (testCombineRasters.R:94:3): Test in workflows ----------------------
  Using PROJ not WKT2 strings
  
  -- Warning (testCombineRasters.R:94:3): Test in workflows ----------------------
  Discarded datum WGS_1984 in CRS definition,
   but +towgs84= values preserved
  
  -- Warning (testCombineRasters.R:94:3): Test in workflows ----------------------
  input and ouput crs are the same
  
  -- Warning (testCombineRasters.R:94:3): Test in workflows ----------------------
  Discarded datum WGS_1984 in CRS definition,
   but +towgs84= values preserved
  
  -- Warning (testCombineRasters.R:94:3): Test in workflows ----------------------
  input and ouput crs are the same
  
  -- Warning (testCombineRasters.R:94:3): Test in workflows ----------------------
  Discarded datum WGS_1984 in CRS definition,
   but +towgs84= values preserved
  
  -- Warning (testCombineRasters.R:94:3): Test in workflows ----------------------
  input and ouput crs are the same
  
  -- Skip (testGetMaxEnt.R:6:3): GetMaxEnt test ----------------------------------
  Reason: On CRAN
  
  -- Skip (testModuleArguments.R:4:3): Check error if not found ------------------
  Reason: On CRAN
  
  -- Warning (???): Help as html -------------------------------------------------
  To display html help files (your default option) you
  need to specify a default viewer. Try changing your
  viewer via options. Printing to console instead
  
  -- ERROR (testReplicate.R:27:3): Replicate workflow tests ----------------------
  Error: Operation timed out after 0 milliseconds with 0 out of 0 bytes received
  Backtrace:
      x
   1. +-zoon::workflow(...) testReplicate.R:27:2
   2. | \-zoon:::LapplyGetModule(...)
   3. |   \-base::lapply(...)
   4. |     \-zoon:::FUN(X[[i]], ...)
   5. |       \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
   6. |         \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
   7. |           \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
   8. \-(function (type, msg, asError = TRUE) ...
  
  -- Skip (testRerunWorkflow.R:9:3): RerunWorkflow simple test -------------------
  Reason: On CRAN
  
  -- Skip (testRerunWorkflow.R:29:3): RerunWorkflow test error -------------------
  Reason: On CRAN
  
  -- Skip (testRerunWorkflow.R:52:3): RerunWorkflow test with NULLs --------------
  Reason: On CRAN
  
  -- Skip (testRerunWorkflow.R:99:3): RerunWorkflow test with Chains -------------
  Reason: On CRAN
  
  -- Skip (testRerunWorkflow.R:131:3): RerunWorkflow test with lists -------------
  Reason: On CRAN
  
  -- Skip (testRerunWorkflow.R:163:3): RerunWorkflow test quoted modules ---------
  Reason: On CRAN
  
  -- Warning (???): SortArgs works. ----------------------------------------------
  CRS object has no comment
  
  -- Warning (???): SortArgs works. ----------------------------------------------
  CRS object has no comment
  
  -- Warning (???): SortArgs works. ----------------------------------------------
  CRS object has no comment
  
  -- Warning (???): SortArgs works. ----------------------------------------------
  CRS object has no comment
  
  -- Warning (???): SortArgs works. ----------------------------------------------
  CRS object has no comment
  
  -- Warning (???): SortArgs works. ----------------------------------------------
  CRS object has no comment
  
  -- Warning (???): SortArgs works. ----------------------------------------------
  CRS object has no comment
  
  -- Warning (???): SortArgs works. ----------------------------------------------
  CRS object has no comment
  
  -- Warning (???): SortArgs works. ----------------------------------------------
  CRS object has no comment
  
  -- Warning (???): SortArgs works. ----------------------------------------------
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:13:3): Expected errors --------------------------
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:25:3): Expected errors --------------------------
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:33:3): Expected errors --------------------------
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:39:3): Expected errors --------------------------
  All occurrence points are outside the raster extent. Try changing your raster.
  
  -- Warning (testTransformCRS.R:39:3): Expected errors --------------------------
  Locations in the occurrence data did not match your raster so no covariate data were extracted. This is only a good idea if you are creating simulated data in the process module
  
  -- Warning (testTransformCRS.R:60:3): occurrence data is handled as expected whe
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:62:3): occurrence data is handled as expected whe
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:62:3): occurrence data is handled as expected whe
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:79:3): occurrence data is handled as expected whe
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:79:3): occurrence data is handled as expected whe
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:94:3): occurrence data is handled as expected whe
  Discarded datum Unknown based on WGS84 ellipsoid in CRS definition
  
  -- Warning (testTransformCRS.R:94:3): occurrence data is handled as expected whe
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:94:3): occurrence data is handled as expected whe
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:94:3): occurrence data is handled as expected whe
  Discarded datum Unknown based on WGS84 ellipsoid in CRS definition
  
  -- Warning (testTransformCRS.R:94:3): occurrence data is handled as expected whe
  glm.fit: algorithm did not converge
  
  -- Warning (testTransformCRS.R:94:3): occurrence data is handled as expected whe
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:94:3): occurrence data is handled as expected whe
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:110:3): occurrence data is handled as expected wh
  Discarded datum Unknown based on WGS84 ellipsoid in CRS definition
  
  -- Warning (testTransformCRS.R:110:3): occurrence data is handled as expected wh
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:110:3): occurrence data is handled as expected wh
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:110:3): occurrence data is handled as expected wh
  Discarded datum Unknown based on WGS84 ellipsoid in CRS definition
  
  -- Warning (testTransformCRS.R:110:3): occurrence data is handled as expected wh
  glm.fit: algorithm did not converge
  
  -- Warning (testTransformCRS.R:110:3): occurrence data is handled as expected wh
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:110:3): occurrence data is handled as expected wh
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:110:3): occurrence data is handled as expected wh
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:110:3): occurrence data is handled as expected wh
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:129:3): occurrence data is handled as expected wh
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:129:3): occurrence data is handled as expected wh
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:141:3): occurrence data is handled as expected wh
  Discarded datum Unknown based on WGS84 ellipsoid in CRS definition
  
  -- Warning (testTransformCRS.R:141:3): occurrence data is handled as expected wh
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:141:3): occurrence data is handled as expected wh
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:141:3): occurrence data is handled as expected wh
  Discarded datum Unknown based on WGS84 ellipsoid in CRS definition
  
  -- Warning (testTransformCRS.R:141:3): occurrence data is handled as expected wh
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:141:3): occurrence data is handled as expected wh
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:141:3): occurrence data is handled as expected wh
  glm.fit: algorithm did not converge
  
  -- Warning (testTransformCRS.R:141:3): occurrence data is handled as expected wh
  glm.fit: algorithm did not converge
  
  -- Warning (testTransformCRS.R:141:3): occurrence data is handled as expected wh
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:141:3): occurrence data is handled as expected wh
  CRS object has no comment
  
  -- Warning (testTransformCRS.R:157:3): occurrence data is handled as expected wh
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:157:3): occurrence data is handled as expected wh
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:157:3): occurrence data is handled as expected wh
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:157:3): occurrence data is handled as expected wh
  Discarded datum Unknown based on Airy 1830 ellipsoid in CRS definition
  
  -- Warning (testTransformCRS.R:157:3): occurrence data is handled as expected wh
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:157:3): occurrence data is handled as expected wh
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:157:3): occurrence data is handled as expected wh
  Discarded datum Unknown based on Airy 1830 ellipsoid in CRS definition
  
  -- Warning (testTransformCRS.R:157:3): occurrence data is handled as expected wh
  glm.fit: algorithm did not converge
  
  -- Warning (testTransformCRS.R:157:3): occurrence data is handled as expected wh
  glm.fit: algorithm did not converge
  
  -- Warning (testTransformCRS.R:191:3): Handles NA values and blanks ------------
  Discarded datum OSGB_1936 in CRS definition
  
  -- Warning (testTransformCRS.R:191:3): Handles NA values and blanks ------------
  Discarded datum OSGB_1936 in CRS definition
  
  -- Skip (testWholeWorkflows.R:14:3): simple, package data workflow works. ------
  Reason: On CRAN
  
  -- Skip (testWholeWorkflows.R:47:3): Check basic quoted workflow. --------------
  Reason: On CRAN
  
  -- Skip (testWholeWorkflows.R:78:3): modules downloading data work -------------
  Reason: On CRAN
  
  -- Skip (testWholeWorkflows.R:109:3): Workflows with lists of modules work. ----
  Reason: On CRAN
  
  -- Skip (testWholeWorkflows.R:218:3): only one set of multiple lists allowed. --
  Reason: On CRAN
  
  -- Skip (testWholeWorkflows.R:260:3): simple, crossvalidation workflow works. --
  Reason: On CRAN
  
  -- Skip (testWholeWorkflows.R:290:3): chains work. -----------------------------
  Reason: On CRAN
  
  -- Skip (testWholeWorkflows.R:426:3): workflow with mix of syntax works. -------
  Reason: On CRAN
  
  -- Skip (testWholeWorkflows.R:458:3): Output understands which previous model wa
  Reason: On CRAN
  
  -- Skip (testWholeWorkflows.R:525:3): Running modules with parameters ----------
  Reason: On CRAN
  
  -- Skip (testZoonCitation.R:4:3): Check error if not found ---------------------
  Reason: On CRAN
  
  -- Warning (testaccessors.R:10:3): All accessor functions return objects of the 
  CRS object has no comment
  
  -- Warning (testaccessors.R:10:3): All accessor functions return objects of the 
  CRS object has no comment
  
  -- Warning (testaccessors.R:20:3): All accessor functions return objects of the 
  CRS object has no comment
  
  -- Warning (testaccessors.R:20:3): All accessor functions return objects of the 
  CRS object has no comment
  
  -- Warning (testaccessors.R:20:3): All accessor functions return objects of the 
  CRS object has no comment
  
  -- Warning (testaccessors.R:20:3): All accessor functions return objects of the 
  CRS object has no comment
  
  -- Warning (testaccessors.R:30:3): All accessor functions return objects of the 
  CRS object has no comment
  
  -- Warning (testaccessors.R:30:3): All accessor functions return objects of the 
  CRS object has no comment
  
  -- Warning (testaccessors.R:30:3): All accessor functions return objects of the 
  CRS object has no comment
  
  -- Warning (testaccessors.R:30:3): All accessor functions return objects of the 
  CRS object has no comment
  
  -- Skip (testcall_path.R:4:3): Test call_path in a large number of variations --
  Reason: On CRAN
  
  -- Skip (testplot.zoonCitation.R:4:3): print.zoonCitation tests ----------------
  Reason: On CRAN
  
  -- Skip (testplot.zoonWorkflow.r:6:3): plot.zoonWorkflow works -----------------
  Reason: On CRAN
  
  -- Skip (testplot.zoonWorkflow.r:66:3): plot.zoonWorkflow module not on repo ---
  Reason: On CRAN
  
  -- Skip (testprint.zoonWorkflow.R:4:3): print.zoonWorkflow tests ---------------
  Reason: On CRAN
  
  -- Skip (testsummary.zoonWorkflow.R:4:3): summary.zoonWorkflow tests -----------
  Reason: On CRAN
  
  -- Skip (testtestModule.R:4:3): repo modules pass ------------------------------
  Reason: On CRAN
  
  -- Skipped tests  --------------------------------------------------------------
  * On CRAN (31)
  
  == testthat results  ===========================================================
  Warning (testCombineRasters.R:80:3): Combinations of projections and extents
  Warning (testCombineRasters.R:82:3): Combinations of projections and extents
  Warning (testCombineRasters.R:82:3): Combinations of projections and extents
  Warning (testCombineRasters.R:82:3): Combinations of projections and extents
  Warning (testCombineRasters.R:82:3): Combinations of projections and extents
  Warning (testCombineRasters.R:94:3): Test in workflows
  Warning (testCombineRasters.R:94:3): Test in workflows
  Warning (testCombineRasters.R:94:3): Test in workflows
  Warning (testCombineRasters.R:94:3): Test in workflows
  Warning (testCombineRasters.R:94:3): Test in workflows
  Warning (testCombineRasters.R:94:3): Test in workflows
  Warning (testCombineRasters.R:94:3): Test in workflows
  Warning (testCombineRasters.R:94:3): Test in workflows
  Warning (testCombineRasters.R:94:3): Test in workflows
  Warning (testCombineRasters.R:94:3): Test in workflows
  Warning (testCombineRasters.R:94:3): Test in workflows
  Warning (testCombineRasters.R:94:3): Test in workflows
  Warning (???): Help as html
  ERROR (testReplicate.R:27:3): Replicate workflow tests
  Warning (???): SortArgs works.
  Warning (???): SortArgs works.
  Warning (???): SortArgs works.
  Warning (???): SortArgs works.
  Warning (???): SortArgs works.
  Warning (???): SortArgs works.
  Warning (???): SortArgs works.
  Warning (???): SortArgs works.
  Warning (???): SortArgs works.
  Warning (???): SortArgs works.
  Warning (testTransformCRS.R:13:3): Expected errors
  Warning (testTransformCRS.R:25:3): Expected errors
  Warning (testTransformCRS.R:33:3): Expected errors
  Warning (testTransformCRS.R:39:3): Expected errors
  Warning (testTransformCRS.R:39:3): Expected errors
  Warning (testTransformCRS.R:60:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:62:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:62:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:79:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:79:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:94:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:94:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:94:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:94:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:94:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:94:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:94:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:110:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:110:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:110:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:110:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:110:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:110:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:110:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:110:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:110:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:129:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:129:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:141:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:141:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:141:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:141:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:141:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:141:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:141:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:141:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:141:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:141:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:157:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:157:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:157:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:157:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:157:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:157:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:157:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:157:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:157:3): occurrence data is handled as expected when CRSs vary
  Warning (testTransformCRS.R:191:3): Handles NA values and blanks
  Warning (testTransformCRS.R:191:3): Handles NA values and blanks
  Warning (testaccessors.R:10:3): All accessor functions return objects of the right length and type
  Warning (testaccessors.R:10:3): All accessor functions return objects of the right length and type
  Warning (testaccessors.R:20:3): All accessor functions return objects of the right length and type
  Warning (testaccessors.R:20:3): All accessor functions return objects of the right length and type
  Warning (testaccessors.R:20:3): All accessor functions return objects of the right length and type
  Warning (testaccessors.R:20:3): All accessor functions return objects of the right length and type
  Warning (testaccessors.R:30:3): All accessor functions return objects of the right length and type
  Warning (testaccessors.R:30:3): All accessor functions return objects of the right length and type
  Warning (testaccessors.R:30:3): All accessor functions return objects of the right length and type
  Warning (testaccessors.R:30:3): All accessor functions return objects of the right length and type
  
  [ FAIL 1 | WARN 87 | SKIP 31 | PASS 202 ]
  Error: Test failures
  Execution halted