Error(s) in re-building vignettes:
--- re-building ‘advanced.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.

Attaching package: 'BaseSet'

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:base':

    union


Attaching package: 'dplyr'

The following object is masked from 'package:BaseSet':

    union

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 53-60 (advanced.Rmd) 
Error: processing vignette 'advanced.Rmd' failed with diagnostics:
there is no package called 'org.Hs.eg.db'
--- failed re-building ‘advanced.Rmd’

--- re-building ‘basic.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.

Attaching package: 'BaseSet'

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:base':

    union

--- finished re-building ‘basic.Rmd’

--- re-building ‘fuzzy.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.

Attaching package: 'BaseSet'

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:base':

    union


Attaching package: 'dplyr'

The following object is masked from 'package:BaseSet':

    union

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

--- finished re-building ‘fuzzy.Rmd’

SUMMARY: processing the following file failed:
  ‘advanced.Rmd’

Error: Vignette re-building failed.
Execution halted