Running 'testthat-active_snw.R' [112s/109s]
  Running 'testthat-clustering.R' [8s/10s]
  Running 'testthat-comparison.R' [4s/5s]
  Running 'testthat-core.R' [42s/72s]
  Running 'testthat-data_generation.R' [3s/4s]
  Running 'testthat-enrichment.R' [31s/35s]
  Running 'testthat-scoring.R' [4s/5s]
  Running 'testthat-visualization.R' [68s/71s]
  Running 'testthat-zzz.R' [3s/4s]
Running the tests in 'tests/testthat-active_snw.R' failed.
Complete output:
  > ##################################################
  > ## Project: pathfindR
  > ## Script purpose: Main "test_check" script for
  > ## "active_snw_functions" functions
  > ## Date: Jan 12, 2020
  > ## Author: Ege Ulgen
  > ##################################################
  > 
  > library(testthat)
  > library(pathfindR)
  Loading required package: pathfindR.data
  ##############################################################################
                          Welcome to pathfindR!
  
  Please cite the article below if you use pathfindR in published reseach:
  
  Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for Comprehensive
  Identification of Enriched Pathways in Omics Data Through Active Subnetworks.
  Front. Genet. doi:10.3389/fgene.2019.00858
  
  ##############################################################################
  > 
  > test_check("pathfindR", filter = "active_snw_functions")
  -- FAILURE (test-active_snw_functions.R:26:3): `active_snw_search()` returns lis
  `snw_list <- active_snw_search(input_for_search = input_df2)` produced unexpected messages.
  Expected match: Found 0 active subnetworks
  Actual values:
  * Found 1 active subnetworks
  
  
  
  
  -- FAILURE (test-active_snw_functions.R:28:3): `active_snw_search()` returns lis
  `snw_list` not identical to list().
  Length mismatch: comparison on first 0 components
  
  -- Skip (test-active_snw_functions.R:41:3): All search methods for `active_snw_s
  Reason: On CRAN
  
  -- Skip (test-active_snw_functions.R:199:3): `visualize_active_subnetworks()` re
  Reason: On CRAN
  
  -- Skipped tests  --------------------------------------------------------------
  * On CRAN (2)
  
  == testthat results  ===========================================================
  FAILURE (test-active_snw_functions.R:26:3): `active_snw_search()` returns list object
  FAILURE (test-active_snw_functions.R:28:3): `active_snw_search()` returns list object
  
  [ FAIL 2 | WARN 0 | SKIP 2 | PASS 39 ]
  Error: Test failures
  Execution halted