Error(s) in re-building vignettes:
  ...
--- re-building ‘mpMap2.Rnw’ using Sweave
Warning in mpcross(founders = founders, finals = finals, pedigree = pedigreeSF,  :
  Removing data for 1 markers, because these markers have NA founder alleles
Error in validObject(.Object) : 
  invalid class “geneticData” object: 1: Coding error for marker D1M3: Founder allele 10 was not present in @hetData[[3]]
invalid class “geneticData” object: 2: Coding error for marker D1M4: Founder allele 2 was not present in @hetData[[4]]
invalid class “geneticData” object: 3: Coding error for marker D1M4: Founder allele 3 was not present in @hetData[[4]]
invalid class “geneticData” object: 4: Coding error for marker D1M4: Founder allele 4 was not present in @hetData[[4]]
invalid class “geneticData” object: 5: Coding error for marker D1M5: Founder allele 1 was not present in @hetData[[5]]
invalid class “geneticData” object: 6: Omitting details of further coding errors

Error: processing vignette 'mpMap2.Rnw' failed with diagnostics:
 chunk 23 (label = rfExample) 
Error : C stack usage  349017336 is too close to the limit


 *** caught segfault ***
address 1c, cause 'memory not mapped'
Warning: stack imbalance in 'lazyLoadDBfetch', 34 then 20
Error in conditionMessage(list(message = "'pb' is not from class %s",  : 
  R_Reprotect: only 20 protected items, can't reprotect index 28
Calls: <Anonymous> ... message -> simpleMessage -> structure -> conditionMessage

 *** caught segfault ***
address 2, cause 'memory not mapped'

Traceback:
 1: tools:::buildVignettes(dir = "", ser_elibs = "/tmp/RtmpvOayTg/filed6b576d299.rds")
An irrecoverable exception occurred. R is aborting now ...

Traceback:
 1: pb$getVal
 2: (function (pb, value, title = NULL, label = NULL) {    if (!inherits(pb, "txtProgressBar"))         stop(gettextf("'pb' is not from class %s", dQuote("txtProgressBar")),             domain = NA)    oldval <- pb$getVal()    pb$up(value)    invisible(oldval)})(list(getVal = function () .val, up = function (value) {    if (!is.finite(value) || value < min || value > max)         return()    .val <<- value    nb <- round(width * (value - min)/(max - min))    if (.nb < nb) {        cat(strrep(char, nb - .nb), file = file)        flush.console()    }    else if (.nb > nb) {        cat("\r", strrep(" ", .nb * nw), "\r", strrep(char, nb),             sep = "", file = file)        flush.console()    }    .nb <<- nb}, kill = function () if (!.killed) {    cat("\n", file = file)    flush.console()    .killed <<- TRUE}), c(".Dim", ".Dimnames", ".Names", ".Tsp", ".Label"), NA_integer_,     NULL)
 3: evalq((function (pb, value, title = NULL, label = NULL) {    if (!inherits(pb, "txtProgressBar"))         stop(gettextf("'pb' is not from class %s", dQuote("txtProgressBar")),             domain = NA)    oldval <- pb$getVal()    pb$up(value)    invisible(oldval)})(list(getVal = function () .val, up = function (value) {    if (!is.finite(value) || value < min || value > max)         return()    .val <<- value    nb <- round(width * (value - min)/(max - min))    if (.nb < nb) {        cat(strrep(char, nb - .nb), file = file)        flush.console()    }    else if (.nb > nb) {        cat("\r", strrep(" ", .nb * nw), "\r", strrep(char, nb),             sep = "", file = file)        flush.console()    }    .nb <<- nb}, kill = function () if (!.killed) {    cat("\n", file = file)    flush.console()    .killed <<- TRUE}), c(".Dim", ".Dimnames", ".Names", ".Tsp", ".Label"), NA_integer_,     NULL), <environment>)
 4: evalq((function (pb, value, title = NULL, label = NULL) {    if (!inherits(pb, "txtProgressBar"))         stop(gettextf("'pb' is not from class %s", dQuote("txtProgressBar")),             domain = NA)    oldval <- pb$getVal()    pb$up(value)    invisible(oldval)})(list(getVal = function () .val, up = function (value) {    if (!is.finite(value) || value < min || value > max)         return()    .val <<- value    nb <- round(width * (value - min)/(max - min))    if (.nb < nb) {        cat(strrep(char, nb - .nb), file = file)        flush.console()    }    else if (.nb > nb) {        cat("\r", strrep(" ", .nb * nw), "\r", strrep(char, nb),             sep = "", file = file)        flush.console()    }    .nb <<- nb}, kill = function () if (!.killed) {    cat("\n", file = file)    flush.console()    .killed <<- TRUE}), c(".Dim", ".Dimnames", ".Names", ".Tsp", ".Label"), NA_integer_,     NULL), <environment>)
 5: doTryCatch(return(expr), name, parentenv, handler)
 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 7: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
 8: doTryCatch(return(expr), name, parentenv, handler)
 9: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),     names[nh], parentenv, handlers[[nh]])
10: tryCatchList(expr, classes, parentenv, handlers)
11: tryCatch(evalq((function (pb, value, title = NULL, label = NULL) {    if (!inherits(pb, "txtProgressBar"))         stop(gettextf("'pb' is not from class %s", dQuote("txtProgressBar")),             domain = NA)    oldval <- pb$getVal()    pb$up(value)    invisible(oldval)})(list(getVal = function () .val, up = function (value) {    if (!is.finite(value) || value < min || value > max)         return()    .val <<- value    nb <- round(width * (value - min)/(max - min))    if (.nb < nb) {        cat(strrep(char, nb - .nb), file = file)        flush.console()    }    else if (.nb > nb) {        cat("\r", strrep(" ", .nb * nw), "\r", strrep(char, nb),             sep = "", file = file)        flush.console()    }    .nb <<- nb}, kill = function () if (!.killed) {    cat("\n", file = file)    flush.console()    .killed <<- TRUE}), c(".Dim", ".Dimnames", ".Names", ".Tsp", ".Label"), NA_integer_,     NULL), <environment>), error = function (x) x, interrupt = function (x) x)
12: structure(list(message = message, call = call), class = c("simpleMessage",     "message", "condition"))
13: simpleMessage(msg, call)
14: message(gettextf("--- failed re-building %s\n", sQuote(file)))
15: tools:::buildVignettes(dir = "/home/ripley/R/packages/tests32/mpMap2.Rcheck/vign_test/mpMap2",     ser_elibs = "/tmp/RtmpvOayTg/filed6b576d299.rds")
An irrecoverable exception occurred. R is aborting now ...