Malformed Description field: should contain one or more complete sentences.
lik_locfit: no visible global function definition for 'predict'
mcll_coeff: no visible global function definition for 'optim'
mcll_est: no visible global function definition for 'cov'
mcll_est: no visible global function definition for 'optim'
mcll_se: no visible global function definition for 'cov'
Undefined global functions or variables:
  cov optim predict
Consider adding
  importFrom("stats", "cov", "optim", "predict")
to your NAMESPACE file.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc    3.0Mb
    libs   1.3Mb
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc    3.2Mb
    libs   2.1Mb
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    libs   7.0Mb
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    doc   6.8Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mcMST.Rcheck/00install.out' for details.
do.linear.conjoint: no visible global function definition for
  'as.formula'
do.linear.conjoint: no visible global function definition for 'lm'
do.linear.conjoint: no visible global function definition for
  'coefficients'
is.close.to.orthogonal: no visible global function definition for 'cor'
mc.add.to.design: no visible global function definition for 'combn'
mc.good.designs: no visible global function definition for 'combn'
Undefined global functions or variables:
  as.formula coefficients combn cor lm
Consider adding
  importFrom("stats", "as.formula", "coefficients", "cor", "lm")
  importFrom("utils", "combn")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'scatterplot3d' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
plot.nsga2: no visible global function definition for 'lines'
plot.nsga2: no visible global function definition for 'pairs'
plot.nsga2.collection: no visible global function definition for
  'devAskNewPage'
Undefined global functions or variables:
  devAskNewPage lines pairs
Consider adding
  importFrom("grDevices", "devAskNewPage")
  importFrom("graphics", "lines", "pairs")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mcp.Rcheck/00install.out' for details.
'library' or 'require' calls to packages already attached by Depends:
  'MASS' 'coda'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'MASS' 'coda'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Depends: includes the non-default packages:
  'lattice', 'locfit', 'maptools', 'quantreg', 'RANN', 'SparseM'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'lattice' which was already attached by Depends.
  Please remove these calls from your code.
'library' or 'require' calls in package code:
  'RColorBrewer' 'car' 'spatstat' 'spdep'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  'RANN' 'maptools'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Running examples in 'McSpatial-Ex.R' failed
The error most likely occurred in:

> ### Name: cparmlogit
> ### Title: Conditionally parametric logit for two or more choices
> ### Aliases: cparmlogit
> ### Keywords: Conditionally Parametric Nonparametric Discrete Choice Models
> 
> ### ** Examples
> 
> library(mlogit)
Loading required package: dfidx
Error: package or namespace load failed for 'dfidx' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/temp/RtmpCIi2Q8/RLIBS_aa6869464796/dplyr/libs/x64/dplyr.dll':
  LoadLibrary failure:  Das angegebene Modul wurde nicht gefunden.

Error: package 'dfidx' could not be loaded
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mcStats.Rcheck/00install.out' for details.
Checking should be performed on sources prepared by 'R CMD build'.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mcvis.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mDAG.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mde.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mdmb.Rcheck/00install.out' for details.
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    doc       1.9Mb
    extdata   5.2Mb
Depends: includes the non-default packages:
  'MASS', 'boot', 'RColorBrewer', 'scatterplot3d', 'tcltk', 'tcltk2',
  'tkrplot', 'rpanel', 'rgl'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MDSMap.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mdsOpt.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mdsr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/meantables.Rcheck/00install.out' for details.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    extdata   2.6Mb
    libs      2.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MEclustnet.Rcheck/00install.out' for details.
installed size is  9.8Mb
  sub-directories of 1Mb or more:
    doc    2.9Mb
    libs   6.0Mb
Error(s) in re-building vignettes:
--- re-building 'cost-report-analysis.Rmd' using rmarkdown
Quitting from lines 61-67 (cost-report-analysis.Rmd) 
Error: processing vignette 'cost-report-analysis.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'cost-report-analysis.Rmd'

--- re-building 'provider_of_service_naming.Rmd' using rmarkdown
--- finished re-building 'provider_of_service_naming.Rmd'

SUMMARY: processing the following file failed:
  'cost-report-analysis.Rmd'

Error: Vignette re-building failed.
Execution halted
conf.interval: no visible global function definition for 'pbinom'
conf.statement: no visible global function definition for 'pbinom'
Undefined global functions or variables:
  pbinom
Consider adding
  importFrom("stats", "pbinom")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/meetupapi.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'mega2rtutorial.Rmd' using rmarkdown
Loading required package: SKAT
Loading required package: Matrix
Loading required package: SPAtest
Loading required package: pedgene
Loading required package: CompQuadForm
Loading required package: survey
Loading required package: grid
Loading required package: survival

Attaching package: 'survey'

The following object is masked from 'package:graphics':

    dotchart

Loading required package: kinship2
Loading required package: quadprog
Loading required package: gdsfmt
Quitting from lines 694-696 (mega2rtutorial.Rmd) 
Error: processing vignette 'mega2rtutorial.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'mega2rtutorial.Rmd'

SUMMARY: processing the following file failed:
  'mega2rtutorial.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MEGENA.Rcheck/00install.out' for details.
.df: no visible global function definition for 'logLik'
coef_simple: no visible global function definition for 'coef'
fitall: no visible binding for global variable 'as.formula'
fitbest: no visible binding for global variable 'as.formula'
lmboot: no visible global function definition for 'lm'
residuals.ensemble : <anonymous>: no visible global function definition
  for 'resid'
residuals.ensemble : <anonymous>: no visible global function definition
  for 'rstudent'
residuals.ensemble : <anonymous>: no visible global function definition
  for 'fitted'
residuals.ensemble : <anonymous>: no visible global function definition
  for 'influence.measures'
stdcoef: no visible global function definition for 'coef'
stdcoef: no visible global function definition for 'update'
summary.ensemble : <anonymous>: no visible global function definition
  for 'logLik'
summary.ensemble : <anonymous>: no visible global function definition
  for 'AIC'
summary.ensemble : <anonymous>: no visible global function definition
  for 'fitted'
summary.resid_ensemble: no visible binding for global variable
  'rstudent'
summary.resid_ensemble: no visible global function definition for 'sd'
summary.variable_ensemble: no visible global function definition for
  'sd'
Undefined global functions or variables:
  AIC as.formula coef fitted influence.measures lm logLik resid
  rstudent sd update
Consider adding
  importFrom("stats", "AIC", "as.formula", "coef", "fitted",
             "influence.measures", "lm", "logLik", "resid", "rstudent",
             "sd", "update")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/meltt.Rcheck/00install.out' for details.
'library' or 'require' calls in package code:
  'adegenet' 'geosphere'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
codomToPropShared: no visible global function definition for
  'df2genind'
codomToPropShared: no visible global function definition for
  'propShared'
mgLandscape: no visible global function definition for 'SpatialPoints'
mgQuick: no visible global function definition for 'distm'
mgQuick: no visible binding for global variable 'distMeeus'
Undefined global functions or variables:
  SpatialPoints df2genind distMeeus distm propShared
Running examples in 'memgene-Ex.R' failed
The error most likely occurred in:

> ### Name: codomToPropShared
> ### Title: Find proportion of shared alleles genetic distances from a
> ###   codominant alleles matrix
> ### Aliases: codomToPropShared
> 
> ### ** Examples
> 
> 
> radialData <- read.csv(system.file("extdata/radial.csv", package="memgene"))
> radialGen <- radialData[, -c(1,2)]
> radialDM <- codomToPropShared(radialGen)
Loading required package: adegenet
Loading required package: ade4
Error: package or namespace load failed for 'adegenet' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Error: memgene:  Please install the adegenet package to find the proportion of shared alleles
Execution halted
Error(s) in re-building vignettes:
--- re-building 'memgeneTutorial.Rnw' using knitr
Quitting from lines 21-30 (memgeneTutorial.Rnw) 
Error: processing vignette 'memgeneTutorial.Rnw' failed with diagnostics:
package or namespace load failed for 'adegenet' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'memgeneTutorial.Rnw'

SUMMARY: processing the following file failed:
  'memgeneTutorial.Rnw'

Error: Vignette re-building failed.
Execution halted
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    R     1.2Mb
    doc   3.1Mb
Package vignette with placeholder title 'Vignette Title':
  'README.Rmd'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/memoria.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mem.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MendelianRandomization.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/merTools.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/messaging.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MESS.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MetaAnalyser.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'GenABEL'
Malformed Description field: should contain one or more complete sentences.
dometa: no visible global function definition for 'qchisq'
dometa: no visible global function definition for 'median'
dometa: no visible global function definition for 'pchisq'
forestplot: no visible global function definition for 'pchisq'
forestplot: no visible global function definition for 'qnorm'
forestplot: no visible global function definition for 'points'
forestplot: no visible global function definition for 'text'
metagwa.files: no visible global function definition for 'read.csv'
metagwa.files: no visible global function definition for 'write.csv'
metagwa.tables: no visible global function definition for 'write.csv'
Undefined global functions or variables:
  median pchisq points qchisq qnorm read.csv text write.csv
Consider adding
  importFrom("graphics", "points", "text")
  importFrom("stats", "median", "pchisq", "qchisq", "qnorm")
  importFrom("utils", "read.csv", "write.csv")
to your NAMESPACE file.
installed size is 12.6Mb
  sub-directories of 1Mb or more:
    libs  12.1Mb
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'unix'
Running examples in 'metabolighteR-Ex.R' failed
The error most likely occurred in:

> ### Name: get_studies
> ### Title: Get Studies
> ### Aliases: get_studies
> 
> ### ** Examples
> 
> get_studies()
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: get_studies ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(metabolighteR)
  Loading required package: magrittr
  
  Attaching package: 'magrittr'
  
  The following objects are masked from 'package:testthat':
  
      equals, is_less_than, not
  
  > 
  > test_check("metabolighteR")
  -- 1. Error: tokenless-calls (@test-tokenless.R#5)  ----------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_true(tibble::is_tibble(get_studies()))
    5. metabolighteR::get_studies()
    6. dplyr::tibble
    7. base::getExportedValue(pkg, name)
    8. base::asNamespace(ns)
    9. base::getNamespace(ns)
   10. base::loadNamespace(name)
   11. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: tokenless-calls (@test-tokenless.R#5) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MetaboList.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MetabolomicsBasics.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MetaClean.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/metacoder.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MetaComp.Rcheck/00install.out' for details.
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > rm(list=ls())
  > library(testthat)
  > library(caret)
  Loading required package: lattice
  Loading required package: ggplot2
  Error: package or namespace load failed for 'caret' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Execution halted
Running examples in 'metagam-Ex.R' failed
The error most likely occurred in:

> ### Name: metagam
> ### Title: Meta-analysis of generalized additive models
> ### Aliases: metagam
> 
> ### ** Examples
> 
> library(metagam)
> library(mgcv)
Loading required package: nlme
This is mgcv 1.8-32. For overview type 'help("mgcv-package")'.
> 
> ## Create 5 datasets
> set.seed(1234)
> datasets <- lapply(1:5, function(x) gamSim(scale = 5, verbose = FALSE))
> 
> ## Fit a GAM in each dataset, then use strip_rawdata() to remove
> ## individual participant data
> models <- lapply(datasets, function(dat){
+   ## This uses the gam() function from mgcv
+   model <- gam(y ~ s(x0, bs = "cr") + s(x1, bs = "cr") + s(x2, bs = "cr"), data = dat)
+   ## This uses strip_rawdata() from metagam
+   strip_rawdata(model)
+ })
Error: `map_df()` requires dplyr
Backtrace:
    x
 1. \-base::lapply(...)
 2.   \-global::FUN(X[[i]], ...)
 3.     +-metagam::strip_rawdata(model)
 4.     \-metagam:::strip_rawdata.gam(model)
 5.       \-purrr::map_dfr(...)
Execution halted
Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(metagam)
  > 
  > test_check("metagam")
  -- 1. Error: (unknown) (@test-metagam.R#7)  ------------------------------------
  `map_df()` requires dplyr
  Backtrace:
   1. base::lapply(...)
   2. metagam:::FUN(X[[i]], ...)
   4. metagam:::strip_rawdata.gam(b)
   5. purrr::map_dfr(...)
  
  -- 2. Error: strip_rawdata.gam works (@test-strip_rawdata.R#33)  ---------------
  `map_df()` requires dplyr
  Backtrace:
   1. base::lapply(fullfits, strip_rawdata)
   3. metagam:::strip_rawdata.gam(X[[i]], ...)
   4. purrr::map_dfr(...)
  
  -- 3. Error: strip_rawdata.bam works (@test-strip_rawdata.R#44)  ---------------
  `map_df()` requires dplyr
  Backtrace:
   1. base::lapply(fullfits, strip_rawdata)
   5. metagam:::strip_rawdata.gam(X[[i]], ...)
   6. purrr::map_dfr(...)
  
  -- 4. Error: strip_rawdata.gamm works (@test-strip_rawdata.R#58)  --------------
  `map_df()` requires dplyr
  Backtrace:
   1. base::lapply(fullfits, strip_rawdata)
   3. metagam:::strip_rawdata.gamm(X[[i]], ...)
   5. metagam:::strip_rawdata.gam(model)
   6. purrr::map_dfr(...)
  
  -- 5. Error: strip_rawdata.gamm4 works (@test-strip_rawdata.R#74)  -------------
  `map_df()` requires dplyr
  Backtrace:
   1. base::lapply(fullfits, strip_rawdata)
   3. metagam:::strip_rawdata.list(X[[i]], ...)
   5. metagam:::strip_rawdata.gam(model)
   6. purrr::map_dfr(...)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 5 ]
  1. Error: (unknown) (@test-metagam.R#7) 
  2. Error: strip_rawdata.gam works (@test-strip_rawdata.R#33) 
  3. Error: strip_rawdata.bam works (@test-strip_rawdata.R#44) 
  4. Error: strip_rawdata.gamm works (@test-strip_rawdata.R#58) 
  5. Error: strip_rawdata.gamm4 works (@test-strip_rawdata.R#74) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'dominance.Rmd' using rmarkdown
Quitting from lines 53-61 (dominance.Rmd) 
Error: processing vignette 'dominance.Rmd' failed with diagnostics:
`map_df()` requires dplyr
--- failed re-building 'dominance.Rmd'

--- re-building 'heterogeneity.Rmd' using rmarkdown
Quitting from lines 53-57 (heterogeneity.Rmd) 
Error: processing vignette 'heterogeneity.Rmd' failed with diagnostics:
`map_df()` requires dplyr
--- failed re-building 'heterogeneity.Rmd'

--- re-building 'introduction.Rmd' using rmarkdown
Loading required package: nlme
This is mgcv 1.8-32. For overview type 'help("mgcv-package")'.
Quitting from lines 62-70 (introduction.Rmd) 
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
`map_df()` requires dplyr
--- failed re-building 'introduction.Rmd'

--- re-building 'multivariate.Rmd' using rmarkdown
Quitting from lines 57-59 (multivariate.Rmd) 
Error: processing vignette 'multivariate.Rmd' failed with diagnostics:
package or namespace load failed for 'gratia' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'multivariate.Rmd'

SUMMARY: processing the following files failed:
  'dominance.Rmd' 'heterogeneity.Rmd' 'introduction.Rmd'
  'multivariate.Rmd'

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  Warning: namespace 'Rcpp' is not available and has been replaced
See 'd:/Rcompile/CRANpkg/local/4.0/metagear.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MetaIntegrator.Rcheck/00install.out' for details.
installed size is  9.4Mb
  sub-directories of 1Mb or more:
    data   9.1Mb
Malformed Description field: should contain one or more complete sentences.
EScombination: no visible global function definition for 'model.matrix'
EScombination: no visible global function definition for 'p.adjust'
EScombination: no visible global function definition for 'pt'
EScombination.paired: no visible global function definition for
  'p.adjust'
EScombination.paired: no visible global function definition for 'pt'
calcfit2Diffrep: no visible global function definition for
  'model.matrix'
directEScombi: no visible global function definition for 'pnorm'
directEScombi: no visible global function definition for 'p.adjust'
directpvalcombi : fstatmeta: no visible global function definition for
  'qnorm'
directpvalcombi: no visible global function definition for 'pnorm'
directpvalcombi: no visible global function definition for 'p.adjust'
pvalcombination: no visible global function definition for
  'model.matrix'
pvalcombination: no visible global function definition for 'p.adjust'
pvalcombination: no visible global function definition for 'pt'
pvalcombination.paired: no visible global function definition for
  'p.adjust'
pvalcombination.paired: no visible global function definition for 'pt'
Undefined global functions or variables:
  model.matrix p.adjust pnorm pt qnorm
Consider adding
  importFrom("stats", "model.matrix", "p.adjust", "pnorm", "pt", "qnorm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/metan.Rcheck/00install.out' for details.
MAPE: no visible global function definition for 'is'
MAPE: no visible global function definition for 'new'
Undefined global functions or variables:
  is new
Consider adding
  importFrom("methods", "is", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Packages suggested but not available for checking: 'doMC', 'doSMP'
Package in Depends field not imported from: 'foreach'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
':::' calls which should be '::':
  'pcaPP:::l1median_HoCr' 'pcaPP:::l1median_VaZh'
  See the note in ?`:::` about the use of this operator.
prepare_Rd: DropDupGenes.Rd:29-31: Dropping empty section \details
prepare_Rd: DropDupGenes.Rd:41-43: Dropping empty section \note
prepare_Rd: DropDupGenes.Rd:47-49: Dropping empty section \seealso
prepare_Rd: MetaPCA-package.Rd:29-30: Dropping empty section \seealso
prepare_Rd: MetaPCA.Rd:76-78: Dropping empty section \details
prepare_Rd: MetaPCA.Rd:88-90: Dropping empty section \note
prepare_Rd: MetaPCA.Rd:94-96: Dropping empty section \seealso
prepare_Rd: PlotPC2D.Rd:80-82: Dropping empty section \details
prepare_Rd: PlotPC2D.Rd:92-94: Dropping empty section \note
prepare_Rd: PlotPC2D.Rd:98-100: Dropping empty section \seealso
prepare_Rd: PreprocessMetaAnalysis.Rd:39-41: Dropping empty section \details
prepare_Rd: PreprocessMetaAnalysis.Rd:51-53: Dropping empty section \note
prepare_Rd: PreprocessMetaAnalysis.Rd:57-59: Dropping empty section \seealso
prepare_Rd: requireAll.Rd:19-21: Dropping empty section \details
prepare_Rd: requireAll.Rd:31-33: Dropping empty section \note
prepare_Rd: requireAll.Rd:25-27: Dropping empty section \references
prepare_Rd: requireAll.Rd:37-39: Dropping empty section \seealso
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/metaplot.Rcheck/00install.out' for details.
Package vignette with placeholder title 'Vignette Title':
  'how_to_use_crosshairs.Rmd'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/metapower.Rcheck/00install.out' for details.
fishercomb: no visible global function definition for 'pchisq'
fishercomb: no visible global function definition for 'p.adjust'
invnorm : <anonymous>: no visible global function definition for
  'qnorm'
invnorm: no visible global function definition for 'pnorm'
invnorm: no visible global function definition for 'p.adjust'
sim.function : <anonymous>: no visible global function definition for
  'rnorm'
sim.function : <anonymous>: no visible global function definition for
  'rnbinom'
Undefined global functions or variables:
  p.adjust pchisq pnorm qnorm rnbinom rnorm
Consider adding
  importFrom("stats", "p.adjust", "pchisq", "pnorm", "qnorm", "rnbinom",
             "rnorm")
to your NAMESPACE file.
Unexported objects imported by ':::' calls:
  'SKAT:::Get_Davies_PVal' 'SKAT:::Get_Lambda' 'SKAT:::Get_Liu_PVal'
  'SKAT:::SKAT_Check_Method' 'SKAT:::SKAT_Optimal_Each_Q'
  'SKAT:::SKAT_Optimal_PValue_Davies' 'SKAT:::SKAT_Optimal_PValue_Liu'
  See the note in ?`:::` about the use of this operator.
installed size is 12.7Mb
  sub-directories of 1Mb or more:
    libs  12.3Mb
GNU make is a SystemRequirements.
fit.bivar: no visible binding for global variable 'binomial'
summary.fit.bivar: no visible global function definition for 'qt'
summary.fit.bivar: no visible global function definition for 'pt'
Undefined global functions or variables:
  binomial pt qt
Consider adding
  importFrom("stats", "binomial", "pt", "qt")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MetaUtility.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/metaviz.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/metawho.Rcheck/00install.out' for details.
crosssection: no visible global function definition for
  'colorRampPalette'
crosssection: no visible global function definition for
  'filled.contour'
crosssection: no visible global function definition for 'axis'
crosssection: no visible global function definition for 'par'
crosssection: no visible global function definition for 'contour'
temperatures: no visible binding for global variable 'time'
Undefined global functions or variables:
  axis colorRampPalette contour filled.contour par time
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("graphics", "axis", "contour", "filled.contour", "par")
  importFrom("stats", "time")
to your NAMESPACE file.
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    doc    2.3Mb
    help   2.0Mb
    libs   2.4Mb
Running examples in 'methcon5-Ex.R' failed
The error most likely occurred in:

> ### Name: meth_aggregate
> ### Title: Calculate region wise summary statistics
> ### Aliases: meth_aggregate
> 
> ### ** Examples
> 
> meth_aggregate(fake_methylation, id = gene, value = meth, fun = mean)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: meth_aggregate ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Malformed Description field: should contain one or more complete sentences.
getdata: no visible global function definition for 'read.csv'
plotdata: no visible global function definition for 'head'
Undefined global functions or variables:
  head read.csv
Consider adding
  importFrom("utils", "head", "read.csv")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MethylCapSig.Rcheck/00install.out' for details.
RUVRand: no visible global function definition for 'barplot'
RUVRand: no visible global function definition for 'prcomp'
RuvRandIter: no visible global function definition for 'kmeans'
RuvRandIter: no visible global function definition for 'barplot'
RuvRandIter: no visible global function definition for 'prcomp'
opt: no visible global function definition for 'optim'
printdata: no visible global function definition for 'head'
Undefined global functions or variables:
  barplot head kmeans optim prcomp
Consider adding
  importFrom("graphics", "barplot")
  importFrom("stats", "kmeans", "optim", "prcomp")
  importFrom("utils", "head")
to your NAMESPACE file.
Running examples in 'metools-Ex.R' failed
The error most likely occurred in:

> ### Name: stattable
> ### Title: Descritive statistic table
> ### Aliases: stattable
> 
> ### ** Examples
> 
> v=data.frame(dataone=c(3,2,5,6,5,4),datatwo=c(33,22,55,66,55,44)
+ ,datathree=c(133,122,155,166,155,144))
> stattable(v) #vertical table
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: stattable ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Running examples in 'metricsgraphics-Ex.R' failed
The error most likely occurred in:

> ### Name: mjs_add_confidence_band
> ### Title: Add a confidence band to line plot
> ### Aliases: mjs_add_confidence_band
> 
> ### ** Examples
> 
> require(binom)
Loading required package: binom
> require(dplyr)
Loading required package: dplyr
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
> 
> set.seed(1492)
> binom.confint(x=sample(2:30, 100, replace=TRUE), n = 100, tol = 1e-8,
+               methods="bayes") %>%
+   mutate(x=1:100) -> bdat
Error in mutate(., x = 1:100) : could not find function "mutate"
Calls: %>% ... eval -> _fseq -> freduce -> withVisible -> <Anonymous>
Execution halted
Error(s) in re-building vignettes:
--- re-building 'MetricsWeighted.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Loading required package: dplyr
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Quitting from lines 156-201 (MetricsWeighted.Rmd) 
Error: processing vignette 'MetricsWeighted.Rmd' failed with diagnostics:
could not find function "%>%"
--- failed re-building 'MetricsWeighted.Rmd'

SUMMARY: processing the following file failed:
  'MetricsWeighted.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is 12.6Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    doc    5.1Mb
    libs   4.6Mb
Malformed Description field: should contain one or more complete sentences.
show,mewTyp: no visible global function definition for 'head'
Undefined global functions or variables:
  head
Consider adding
  importFrom("utils", "head")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mfbvar.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Error(s) in re-building vignettes:
--- re-building 'MfUSampler.Rnw' using Sweave
MfUSampler 1.0.4
Convenience Functions for Multivariate MCMC Using Univariate Samplers
For citations, please use:
Alireza S. Mahani, Mansour T. A. Sharabiani (2017). Multivariate-From-Univariate MCMC Sampler: The R Package MfUSampler. Journal of Statistical Software, Code Snippets, 78(1), 1-22. doi:10.18637/jss.v078.c01

Error: processing vignette 'MfUSampler.Rnw' failed with diagnostics:
 chunk 31 
Error in compileCode(f, code, language = language, verbose = verbose) : 
  Compilation ERROR, function(s)/method(s) not created! D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file891c5cf333ed.o:file891c5cf333ed.cpp:(.text+0x4df): undefined reference to `dgemv_'
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file891c5cf333ed.o:file891c5cf333ed.cpp:(.text+0x66f): undefined reference to `dgemv_'
collect2.exe: error: ld returned 1 exit status

--- failed re-building 'MfUSampler.Rnw'

SUMMARY: processing the following file failed:
  'MfUSampler.Rnw'

Error: Vignette re-building failed.
Execution halted
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc   4.4Mb
Package vignette with placeholder title 'Vignette Title':
  'mglm_vignette.rmd'
Malformed Description field: should contain one or more complete sentences.
Packages in Depends field not imported from:
  'corpcor' 'evd' 'fields' 'numDeriv'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
'library' or 'require' call to 'RJSONIO' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
.onAttach: no visible global function definition for 'packageVersion'
.onAttach: no visible binding for global variable '.MGRAST'
build.MGRAST: no visible binding for global variable '.MGRAST'
build.MGRAST: no visible global function definition for 'fromJSON'
call.MGRAST: no visible binding for global variable '.MGRAST'
call.MGRAST: no visible global function definition for 'download.file'
call.MGRAST: no visible global function definition for 'isValidJSON'
call.MGRAST: no visible global function definition for 'fromJSON'
doc.MGRAST: no visible binding for global variable '.MGRAST'
doc.MGRAST: no visible global function definition for 'str'
load.MGRAST: no visible binding for global variable '.MGRAST'
parse.MGRAST: no visible binding for global variable '.MGRAST'
this.package: no visible binding for global variable '.MGRAST'
Undefined global functions or variables:
  .MGRAST download.file fromJSON isValidJSON packageVersion str
Consider adding
  importFrom("utils", "download.file", "packageVersion", "str")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'Safe-Censoring.Rmd' using rmarkdown
--- finished re-building 'Safe-Censoring.Rmd'

--- re-building 'Safe-Substitution.Rmd' using rmarkdown
Quitting from lines 93-94 (Safe-Substitution.Rmd) 
Error: processing vignette 'Safe-Substitution.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Safe-Substitution.Rmd'

SUMMARY: processing the following file failed:
  'Safe-Substitution.Rmd'

Error: Vignette re-building failed.
Execution halted
calc_z_var: no visible binding for global variable 'median'
diffScore: no visible global function definition for 'new'
diffScore: no visible global function definition for 'model.matrix'
logNORMcdf: no visible global function definition for 'pnorm'
mGSZ.adj.mean.std: no visible binding for global variable 'sd'
pick.data.cols: no visible binding for global variable 'var'
plotProfile: no visible binding for global variable 'quantile'
plotProfile: no visible global function definition for 'lines'
plotProfile: no visible global function definition for 'legend'
Undefined global functions or variables:
  legend lines median model.matrix new pnorm quantile sd var
Consider adding
  importFrom("graphics", "legend", "lines")
  importFrom("methods", "new")
  importFrom("stats", "median", "model.matrix", "pnorm", "quantile",
             "sd", "var")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File
  LICENSE
is not mentioned in the DESCRIPTION file.
BCI: no visible global function definition for 'quantile'
Metro_Hastings: no visible global function definition for 'optim'
Metro_Hastings: no visible global function definition for 'runif'
Metro_Hastings: no visible global function definition for 'var'
plotMH: no visible global function definition for 'hist'
plotMH: no visible global function definition for 'frame'
plotMH: no visible global function definition for 'text'
Undefined global functions or variables:
  frame hist optim quantile runif text var
Consider adding
  importFrom("graphics", "frame", "hist", "text")
  importFrom("stats", "optim", "quantile", "runif", "var")
to your NAMESPACE file.
Running examples in 'MIAmaxent-Ex.R' failed
The error most likely occurred in:

> ### Name: deriveVars
> ### Title: Derive variables by transformation.
> ### Aliases: deriveVars
> 
> ### ** Examples
> 
> toydata_dvs <- deriveVars(toydata_sp1po, c("L", "M", "D", "HF", "HR", "T", "B"))
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: deriveVars ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/miceadds.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/miceFast.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/micemd.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/miceMNAR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/miceRanger.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mice.Rcheck/00install.out' for details.
Running examples in 'micompr-Ex.R' failed
The error most likely occurred in:

> ### Name: assumptions.cmpoutput
> ### Title: Get assumptions for parametric tests performed on output
> ###   comparisons
> ### Aliases: assumptions.cmpoutput
> 
> ### ** Examples
> 
> 
> # Create a cmpoutput object from the provided datasets
> cmp <- cmpoutput("All", 0.9, pphpc_ok$data[["All"]], pphpc_ok$obs_lvls)
> 
> # Get the assumptions for the parametric tests performed in cmp
> acmp <- assumptions(cmp)
sROC 0.1-2 loaded
MANOVA assumptions require 'MVN' and 'biotools' packages.
Error in `*tmp*`[[i]] : subscript out of bounds
Calls: assumptions -> assumptions.cmpoutput
Execution halted
Running 'testthat.R' [21s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # Copyright (c) 2016 Nuno Fachada
  > # Distributed under the MIT License (http://opensource.org/licenses/MIT)
  > 
  > library(testthat)
  > 
  > test_check("micompr")
  Loading required package: micompr
  -- 1. Error: assumptions.cmpoutput creates the correct object (@test_cmpoutput.R
  subscript out of bounds
  Backtrace:
   1. micompr::assumptions(cmp)
   2. micompr:::assumptions.cmpoutput(cmp)
  
  -- 2. Error: micomp assumptions have the correct properties (@test_micomp.R#281)
  subscript out of bounds
  Backtrace:
   1. micompr::assumptions(mic1a)
   2. micompr:::assumptions.micomp(mic1a)
   3. base::lapply(obj, function(x) assumptions(x))
   4. micompr:::FUN(X[[i]], ...)
   6. micompr:::assumptions.cmpoutput(x)
  
  == testthat results  ===========================================================
  [ OK: 291 | SKIPPED: 0 | WARNINGS: 72 | FAILED: 2 ]
  1. Error: assumptions.cmpoutput creates the correct object (@test_cmpoutput.R#214) 
  2. Error: micomp assumptions have the correct properties (@test_micomp.R#281) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'paper.Rnw' using knitr
Quitting from lines 341-342 (paper.Rnw) 
Error: processing vignette 'paper.Rnw' failed with diagnostics:
subscript out of bounds
--- failed re-building 'paper.Rnw'

--- re-building 'tolatex-examples.Rnw' using knitr
Warning in wilcox.test.default(x = c(-2.17390550005803e-11, -2.17097451127302e-11,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(2.13309370167281e-11, 2.12594386539422e-11,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(1.99236183107132e-11, 1.97388771994156e-11,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(1.00897068477934e-12, 1.02406971791424e-12,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(8.95727936267576e-13, 8.4909856923332e-13,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(9.80548975348938e-13, 8.81072992342524e-13,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(5.90887339058099e-11, 6.09077233093558e-11,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(9.97119053991469e-15, 9.92695509127728e-15,  :
  cannot compute exact p-value with ties
--- finished re-building 'tolatex-examples.Rnw'

SUMMARY: processing the following file failed:
  'paper.Rnw'

Error: Vignette re-building failed.
Execution halted
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'microcontax.data'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/microcontax.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/micropan.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/microseq.Rcheck/00install.out' for details.
Running examples in 'MiDA-Ex.R' failed
The error most likely occurred in:

> ### Name: MiBiClassGBODT
> ### Title: Binary classification using gradient boosting over desicion
> ###   trees
> ### Aliases: MiBiClassGBODT
> 
> ### ** Examples
> 
> 
> #get gene expression and specimen data
> data("IMexpression");data("IMspecimen")
> #sample expression matrix and specimen data for binary classification,
> #only "NORM" and "EBV" specimens are left
> SampleMatrix<-MiDataSample(IMexpression, IMspecimen$diagnosis,"norm", "ebv")
> SampleSpecimen<-MiSpecimenSample(IMspecimen$diagnosis, "norm", "ebv")
> #Fitting, low tuning for faster running
> BoostRes<-MiBiClassGBODT(SampleMatrix, SampleSpecimen, n.crossval = 3,
+                        ntrees = 10, shrinkage = 1, intdepth = 2)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: MiBiClassGBODT ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Running examples in 'midastouch-Ex.R' failed
The error most likely occurred in:

> ### Name: mice.impute.midastouch
> ### Title: Predictive Mean Matching with distance aided selection of donors
> ### Aliases: mice.impute.midastouch midastouch
> ### Keywords: mice
> 
> ### ** Examples
> 
> ## from R:: mice, slightly adapted ##
> 
> # do default multiple imputation on a numeric matrix
> library(midastouch)
> library(mice)
Error: package or namespace load failed for 'mice' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Running examples in 'migest-Ex.R' failed
The error most likely occurred in:

> ### Name: multi_comp
> ### Title: Multiplicative Component Description of Origin-Destination
> ###   Migration Flow Tables
> ### Aliases: multi_comp
> 
> ### ** Examples
> 
> n <- LETTERS[1:4]
> m0 <- matrix(data = c(0, 100, 30, 70, 50, 0, 45, 5, 60, 35, 0, 40, 20, 25, 20, 0), 
+              nrow = 4, ncol = 4, dimnames = list(orig = n, dest = n), byrow = TRUE)
> addmargins(m0)
     dest
orig    A   B  C   D Sum
  A     0 100 30  70 200
  B    50   0 45   5 100
  C    60  35  0  40 135
  D    20  25 20   0  65
  Sum 130 160 95 115 500
> multi_comp(m = m0)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: multi_comp ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
migration.cv.in : <anonymous>: no visible global function definition
  for 'sd'
migration.cv.out : <anonymous>: no visible global function definition
  for 'sd'
migration.field.diagram: no visible global function definition for
  'lines'
migration.field.diagram: no visible global function definition for
  'text'
migration.field.diagram: no visible global function definition for
  'polygon'
migration.field.diagram: no visible global function definition for 'lm'
migration.field.diagram: no visible global function definition for
  'predict'
migration.field.diagram: no visible global function definition for
  'points'
migration.field.diagram: no visible global function definition for
  'resid'
migration.field.diagram: no visible global function definition for
  'coef'
migration.field.diagram: no visible global function definition for
  'mtext'
migration.field.diagram: no visible global function definition for
  'density'
migration.field.diagram: no visible global function definition for
  'rug'
migration.gini.col : <anonymous>: no visible global function definition
  for 'dist'
migration.gini.in : <anonymous>: no visible global function definition
  for 'dist'
migration.gini.out : <anonymous>: no visible global function definition
  for 'dist'
migration.gini.row : <anonymous>: no visible global function definition
  for 'dist'
migration.gini.total: no visible global function definition for 'dist'
Undefined global functions or variables:
  coef density dist lines lm mtext points polygon predict resid rug sd
  text
Consider adding
  importFrom("graphics", "lines", "mtext", "points", "polygon", "rug",
             "text")
  importFrom("stats", "coef", "density", "dist", "lm", "predict",
             "resid", "sd")
to your NAMESPACE file.
Running examples in 'migrbc-Ex.R' failed
The error most likely occurred in:

> ### Name: plot_mig_hist
> ### Title: Plot a migration history.
> ### Aliases: plot_mig_hist
> 
> ### ** Examples
> 
> ## to suppresse log messages to the console
> migrbc::initialize_logger(log_level = 1)
logger  'migrbc' has log_level=1 and writes to the console 
> 
> plot_test <- function(mig_hist) {
+   plot_mig_hist(date_crossing = as.character(mig_hist$date_crossing), 
+                 is_arrival = mig_hist$is_arrival,
+                 days_to_next_crossing = mig_hist$days_to_next_crossing,
+                 show_date = FALSE, 
+                 cex = 0.8)
+ }
> number_of_people = 1
> person_data <- migrbc::setup_random_test_data(number_of_people, 
+                                               initial_date = '2001-01-01', 
+                                               numJourneys = 3,
+                                               min = 0, 
+                                              max = 100)
> cross_spaces <- migrbc::pre_process(person_data, n_groups = 1)
> ## run in non-parallel
> post_data <- migrbc::run_rbc(cross_spaces, 
+                        window_size = 487, 
+                        threshold_year = 365, 
+                        parallel=FALSE)
Error in value[[3L]](cond) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error(s) in re-building vignettes:
--- re-building 'migrbc.Rmd' using rmarkdown
Quitting from lines 330-342 (migrbc.Rmd) 
Error: processing vignette 'migrbc.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'migrbc.Rmd'

SUMMARY: processing the following file failed:
  'migrbc.Rmd'

Error: Vignette re-building failed.
Execution halted
.default_model: no visible global function definition for 'is'
.guess_type: no visible global function definition for 'is.ts'
.parse_trans: no visible binding for global variable 'qnorm'
do_get_data_from_disk: no visible global function definition for
  'read.csv'
do_get_data_from_mi: no visible global function definition for 'data'
do_get_data_from_r : <anonymous>: no visible global function definition
  for 'is'
do_parametric_eval : <anonymous>: no visible global function definition
  for 'dev.off'
do_parametric_eval : <anonymous>: no visible global function definition
  for 'title'
do_var_options : varHandler2: no visible global function definition for
  'is'
do_var_options : varHandler3: no visible global function definition for
  'getClass'
do_var_options : varHandler3: no visible global function definition for
  'is'
do_var_options : changeHandler: no visible global function definition
  for 'is'
do_var_options : <anonymous>: no visible global function definition for
  'title'
do_var_options: no visible global function definition for 'getClass'
do_var_options: no visible global function definition for 'is'
helpHandler: no visible global function definition for 'browseURL'
is.method_in_mi: no visible global function definition for
  'selectMethod'
is.method_in_mi: no visible global function definition for 'signature'
Undefined global functions or variables:
  browseURL data dev.off getClass is is.ts qnorm read.csv selectMethod
  signature title
Consider adding
  importFrom("grDevices", "dev.off")
  importFrom("graphics", "title")
  importFrom("methods", "getClass", "is", "selectMethod", "signature")
  importFrom("stats", "is.ts", "qnorm")
  importFrom("utils", "browseURL", "data", "read.csv")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
nat_hist: no visible global function definition for 'data'
nat_hist: no visible binding for global variable 'current.other'
t_mal: no visible global function definition for 'uniroot'
t_prog: no visible global function definition for 'rlnorm'
tdeath_lung: no visible global function definition for 'data'
tdeath_lung: no visible binding for global variable 'ci.lung'
tdeath_lung: no visible binding for global variable 'current.other'
tdeath_lung: no visible binding for global variable 'former.other'
tdeath_lung: no visible binding for global variable 'never.other'
tdeath_other: no visible global function definition for 'data'
tdeath_other: no visible binding for global variable 'ci.lung'
tdeath_other: no visible binding for global variable 'current.other'
tdeath_other: no visible binding for global variable 'former.other'
tdeath_other: no visible binding for global variable 'never.other'
Undefined global functions or variables:
  ci.lung current.other data former.other never.other rlnorm uniroot
Consider adding
  importFrom("stats", "rlnorm", "uniroot")
  importFrom("utils", "data")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/miLineage.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
MImix.default: no visible binding for global variable 'coef'
MImix.default: no visible binding for global variable 'vcov'
MImix.one: no visible global function definition for 'qnorm'
MImix.one: no visible global function definition for 'uniroot'
mixcdf.target: no visible global function definition for 'pnorm'
print.MImixresult: no visible global function definition for 'coef'
print.MImixresult: no visible global function definition for 'vcov'
summary.MImixresult: no visible global function definition for 'coef'
summary.MImixresult: no visible global function definition for 'vcov'
summary.MImixresult: no visible global function definition for 'qt'
Undefined global functions or variables:
  coef pnorm qnorm qt uniroot vcov
Consider adding
  importFrom("stats", "coef", "pnorm", "qnorm", "qt", "uniroot", "vcov")
to your NAMESPACE file.
Running examples in 'MIMSunit-Ex.R' failed
The error most likely occurred in:

> ### Name: aggregate_for_mims
> ### Title: Aggregate over epoch to get numerically integrated values.
> ### Aliases: aggregate_for_mims
> 
> ### ** Examples
> 
>   # sample data
>   df = sample_raw_accel_data
>   head(df)
    HEADER_TIME_STAMP     X      Y      Z
1 2016-01-15 11:00:00 0.148 -0.438  0.016
2 2016-01-15 11:00:00 0.215 -0.418 -0.023
3 2016-01-15 11:00:00 0.266 -0.402 -0.012
4 2016-01-15 11:00:00 0.336 -0.430  0.012
5 2016-01-15 11:00:00 0.430 -0.320  0.000
6 2016-01-15 11:00:00 0.535 -0.258  0.004
> 
>   # epoch set to 5 seconds, and method set to "trapz"
>   aggregate_for_mims(df, epoch = '5 sec', method='trapz')
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/temp/RtmpasXiRn/RLIBS_14b7074447dc7/dplyr/libs/x64/dplyr.dll':
  LoadLibrary failure:  Das angegebene Modul wurde nicht gefunden.
Calls: aggregate_for_mims ... getNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mimsy.Rcheck/00install.out' for details.
miney : plot.initial.matrix: no visible global function definition for
  'rect'
miney : plot.known.matrix: no visible global function definition for
  'rect'
miney : plot.known.matrix: no visible global function definition for
  'text'
miney: no visible global function definition for 'locator'
miney: no visible global function definition for 'rect'
miney: no visible global function definition for 'title'
Undefined global functions or variables:
  locator rect text title
Consider adding
  importFrom("graphics", "locator", "rect", "text", "title")
to your NAMESPACE file.
rminimax: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/minqa.Rcheck/00install.out' for details.
read_design: no visible global function definition for 'model.frame'
read_design: no visible global function definition for 'read.table'
read_design: no visible global function definition for 'model.matrix'
read_response: no visible global function definition for 'read.table'
update_beta: no visible global function definition for 'update'
update_beta: no visible global function definition for 'glm'
update_beta: no visible global function definition for 'poisson'
Undefined global functions or variables:
  glm model.frame model.matrix poisson read.table update
Consider adding
  importFrom("stats", "glm", "model.frame", "model.matrix", "poisson",
             "update")
  importFrom("utils", "read.table")
to your NAMESPACE file.
minxent.multiple: no visible global function definition for 'cov.wt'
minxent.single: no visible global function definition for 'optimize'
Undefined global functions or variables:
  cov.wt optimize
Consider adding
  importFrom("stats", "cov.wt", "optimize")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MIPHENO.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mipred.Rcheck/00install.out' for details.
.FCLoess: no visible global function definition for 'loess'
.FCLoessM: no visible global function definition for 'loess'
.FCLoessM: no visible global function definition for 'median'
.Import.Luminex: no visible global function definition for 'read.csv'
.Intra.Me: no visible global function definition for 'sd'
.Intra.Me: no visible global function definition for 'quantile'
.Intra.Me: no visible global function definition for 'qchisq'
.Intra.Median: no visible global function definition for 'median'
.boxplot.rtprofile: no visible global function definition for 'boxplot'
.denplot: no visible global function definition for 'density'
.denplot: no visible global function definition for 'abline'
.normalize.Luminex: no visible global function definition for 'sd'
.normalize.qrtpcr: no visible global function definition for 'density'
.validate.default: no visible global function definition for 't.test'
Undefined global functions or variables:
  abline boxplot density loess median qchisq quantile read.csv sd
  t.test
Consider adding
  importFrom("graphics", "abline", "boxplot")
  importFrom("stats", "density", "loess", "median", "qchisq", "quantile",
             "sd", "t.test")
  importFrom("utils", "read.csv")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
fisher.combination: no visible global function definition for 'pchisq'
gs.test: no visible global function definition for 'ks.test'
gs.test: no visible global function definition for 'wilcox.test'
gs.test: no visible global function definition for 'fisher.test'
inverse.normal.combination: no visible global function definition for
  'qnorm'
inverse.normal.combination: no visible global function definition for
  'pnorm'
limma.one.sided: no visible global function definition for 'pt'
Undefined global functions or variables:
  fisher.test ks.test pchisq pnorm pt qnorm wilcox.test
Consider adding
  importFrom("stats", "fisher.test", "ks.test", "pchisq", "pnorm", "pt",
             "qnorm", "wilcox.test")
to your NAMESPACE file.
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    R      1.4Mb
    libs   3.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/misaem.Rcheck/00install.out' for details.
'library' or 'require' calls in package code:
  'rgl' 'tkrplot'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'canonicalizeAndMergeScene' 'colorScene' 't2ve' 'vertexNormals'
  'vertexTriangles'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/misclassGLM.Rcheck/00install.out' for details.
Running 'testthat.R' [1s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(miselect)
  > library(mice)
  Error: package or namespace load failed for 'mice' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'miselect.Rmd' using rmarkdown
Quitting from lines 76-82 (miselect.Rmd) 
Error: processing vignette 'miselect.Rmd' failed with diagnostics:
package or namespace load failed for 'mice' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'miselect.Rmd'

SUMMARY: processing the following file failed:
  'miselect.Rmd'

Error: Vignette re-building failed.
Execution halted
missForest: no visible global function definition for 'predict'
missForest: no visible global function definition for 'idiv'
missForest: no visible global function definition for 'var'
nrmse: no visible global function definition for 'var'
Undefined global functions or variables:
  idiv predict var
Consider adding
  importFrom("stats", "predict", "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/missingHE.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/missMDA.Rcheck/00install.out' for details.
AndersonDarling: no visible global function definition for 'spline'
Hawkins: no visible global function definition for 'cov'
Hawkins: no visible global function definition for 'pf'
Impute: no visible global function definition for 'cov'
Mimpute: no visible global function definition for 'rnorm'
SimNey: no visible global function definition for 'runif'
TestMCARNormality: no visible global function definition for 'cov'
TestMCARNormality: no visible global function definition for 'pchisq'
TestUNey: no visible global function definition for 'pchisq'
boxplot.testhomosc: no visible global function definition for 'par'
boxplot.testhomosc: no visible global function definition for 'title'
boxplot.testhomosc: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline cov par pchisq pf rnorm runif spline title
Consider adding
  importFrom("graphics", "abline", "par", "title")
  importFrom("stats", "cov", "pchisq", "pf", "rnorm", "runif", "spline")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'vignette_missRanger.Rmd' using rmarkdown
Loading required package: dplyr
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Quitting from lines 91-99 (vignette_missRanger.Rmd) 
Error: processing vignette 'vignette_missRanger.Rmd' failed with diagnostics:
could not find function "%>%"
--- failed re-building 'vignette_missRanger.Rmd'

SUMMARY: processing the following file failed:
  'vignette_missRanger.Rmd'

Error: Vignette re-building failed.
Execution halted
'library' or 'require' call to 'CompQuadForm' which was already attached by Depends.
  Please remove these calls from your code.
linear.test: no visible global function definition for 'lm'
linear.test: no visible global function definition for 'pchisq'
linear.weight.test: no visible global function definition for 'lm'
linear.weight.test: no visible global function definition for 'dbeta'
linear.weight.test: no visible global function definition for 'pchisq'
logit.test: no visible global function definition for 'glm'
logit.test: no visible global function definition for 'binomial'
logit.test: no visible binding for global variable 'logit'
logit.test: no visible global function definition for 'pchisq'
logit.weight.test: no visible global function definition for 'glm'
logit.weight.test: no visible global function definition for 'binomial'
logit.weight.test: no visible binding for global variable 'logit'
logit.weight.test: no visible global function definition for 'dbeta'
logit.weight.test: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  binomial dbeta glm lm logit pchisq
Consider adding
  importFrom("stats", "binomial", "dbeta", "glm", "lm", "pchisq")
to your NAMESPACE file.
Running examples in 'mitml-Ex.R' failed
The error most likely occurred in:

> ### Name: mids2mitml.list
> ### Title: Convert objects of class 'mids' to 'mitml.list'
> ### Aliases: mids2mitml.list
> 
> ### ** Examples
> 
> data(studentratings)
> 
> # imputation using mice
> require(mice)
Loading required package: mice
Error: package or namespace load failed for 'mice' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
> imp <- mice(studentratings)
Error in mice(studentratings) : could not find function "mice"
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/miWQS.Rcheck/00install.out' for details.
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    libs   5.2Mb
Running 'testthat.R' [18s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > Sys.setenv("R_TESTS" = "")
  > 
  > 
  > library(testthat)
  > library(mixdir)
  > 
  > test_check("mixdir")
  -- 1. Error: expec_log_xij works (@test_cpp.R#18)  -----------------------------
  `map_df()` requires dplyr
  Backtrace:
   1. base::as.matrix(purrr::map_df(purrr::map_df(X, as.factor), as.numeric))
   2. purrr::map_df(purrr::map_df(X, as.factor), as.numeric)
  
  -- 2. Error: zeta update works (@test_cpp.R#42)  -------------------------------
  `map_df()` requires dplyr
  Backtrace:
   1. base::as.matrix(purrr::map_df(purrr::map_df(X, as.factor), as.numeric))
   2. purrr::map_df(purrr::map_df(X, as.factor), as.numeric)
  
  -- 3. Error: zeta update works for dp (@test_cpp.R#83)  ------------------------
  `map_df()` requires dplyr
  Backtrace:
   1. base::as.matrix(purrr::map_df(purrr::map_df(X, as.factor), as.numeric))
   2. purrr::map_df(purrr::map_df(X, as.factor), as.numeric)
  
  == testthat results  ===========================================================
  [ OK: 46 | SKIPPED: 2 | WARNINGS: 0 | FAILED: 3 ]
  1. Error: expec_log_xij works (@test_cpp.R#18) 
  2. Error: zeta update works (@test_cpp.R#42) 
  3. Error: zeta update works for dp (@test_cpp.R#83) 
  
  Error: testthat unit tests failed
  Execution halted
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    R      4.1Mb
    libs   2.1Mb
The following directory looks like a leftover from 'knitr':
  'figure'
Please remove from your package.
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mixKernel.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'discriminant-analysis.Rmd' using rmarkdown
--- finished re-building 'discriminant-analysis.Rmd'

--- re-building 'matrix-t-estimation.Rmd' using rmarkdown
Quitting from lines 271-317 (matrix-t-estimation.Rmd) 
Error: processing vignette 'matrix-t-estimation.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'matrix-t-estimation.Rmd'

--- re-building 'matrixnormal.Rmd' using rmarkdown
--- finished re-building 'matrixnormal.Rmd'

--- re-building 'mixturemodel.Rmd' using rmarkdown
--- finished re-building 'mixturemodel.Rmd'

SUMMARY: processing the following file failed:
  'matrix-t-estimation.Rmd'

Error: Vignette re-building failed.
Execution halted
Packages in Depends field not imported from:
  'MASS' 'RODBC' 'tcltk' 'tcltk2'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
fit.mixtNB: no visible global function definition for 'dnbinom'
fit.mixtNB: no visible global function definition for 'nlminb'
wald.test: no visible global function definition for 'pnorm'
wald.test: no visible global function definition for 'p.adjust'
Undefined global functions or variables:
  dnbinom nlminb p.adjust pnorm
Consider adding
  importFrom("stats", "dnbinom", "nlminb", "p.adjust", "pnorm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mizer.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
computeContourValues: no visible global function definition for
  'na.omit'
deselectNonMovementSteps : coOccurProb: no visible global function
  definition for 'dnorm'
deselectNonMovementSteps: no visible global function definition for
  'pnorm'
estVarMKDE: no visible global function definition for 'na.omit'
estVarMKDE: no visible global function definition for 'qnorm'
estVarMKDE: no visible global function definition for 'optimize'
plotMKDE: no visible global function definition for 'rainbow'
Undefined global functions or variables:
  dnorm na.omit optimize pnorm qnorm rainbow
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("stats", "dnorm", "na.omit", "optimize", "pnorm", "qnorm")
to your NAMESPACE file.
Running examples in 'mkin-Ex.R' failed
The error most likely occurred in:

> ### Name: nlme_function
> ### Title: Helper functions to create nlme models from mmkin row objects
> ### Aliases: nlme_function mean_degparms nlme_data
> 
> ### ** Examples
> 
> sampling_times = c(0, 1, 3, 7, 14, 28, 60, 90, 120)
> m_SFO <- mkinmod(parent = mkinsub("SFO"))
> d_SFO_1 <- mkinpredict(m_SFO,
+   c(k_parent = 0.1),
+   c(parent = 98), sampling_times)
> d_SFO_1_long <- mkin_wide_to_long(d_SFO_1, time = "time")
> d_SFO_2 <- mkinpredict(m_SFO,
+   c(k_parent = 0.05),
+   c(parent = 102), sampling_times)
> d_SFO_2_long <- mkin_wide_to_long(d_SFO_2, time = "time")
> d_SFO_3 <- mkinpredict(m_SFO,
+   c(k_parent = 0.02),
+   c(parent = 103), sampling_times)
> d_SFO_3_long <- mkin_wide_to_long(d_SFO_3, time = "time")
> 
> d1 <- add_err(d_SFO_1, function(value) 3, n = 1)
> d2 <- add_err(d_SFO_2, function(value) 2, n = 1)
> d3 <- add_err(d_SFO_3, function(value) 4, n = 1)
> ds <- c(d1 = d1, d2 = d2, d3 = d3)
> 
> f <- mmkin("SFO", ds, cores = 1, quiet = TRUE)
> mean_dp <- mean_degparms(f)
> grouped_data <- nlme_data(f)
Error: `map_df()` requires dplyr
Backtrace:
    x
 1. \-mkin::nlme_data(f)
 2.   \-purrr::map_dfr(ds_list, function(x) x, .id = "ds")
Execution halted
Running 'testthat.R' [45s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(mkin)
  > 
  > test_check("mkin")
  -- 1. Error: nlme_function works correctly (@test_nlme.R#31)  ------------------
  `map_df()` requires dplyr
  Backtrace:
   1. mkin::nlme_data(f)
   2. purrr::map_dfr(ds_list, function(x) x, .id = "ds")
  
  == testthat results  ===========================================================
  [ OK: 87 | SKIPPED: 20 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: nlme_function works correctly (@test_nlme.R#31) 
  
  Error: testthat unit tests failed
  Execution halted
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
mkle: no visible global function definition for 'sd'
mkle: no visible global function definition for 'density'
mkle: no visible global function definition for 'optimize'
mkle.ci: no visible global function definition for 'sd'
mkle.ci: no visible binding for global variable 'var'
mkle.ci: no visible global function definition for 'quantile'
mkle.ci: no visible global function definition for 'qnorm'
opt.bw: no visible global function definition for 'sd'
opt.bw : mse: no visible global function definition for 'var'
opt.bw: no visible global function definition for 'optimize'
opt.bw: no visible global function definition for 'var'
Undefined global functions or variables:
  density optimize qnorm quantile sd var
Consider adding
  importFrom("stats", "density", "optimize", "qnorm", "quantile", "sd",
             "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MKpower.Rcheck/00install.out' for details.
mkssd: no visible global function definition for 'txtProgressBar'
mkssd: no visible global function definition for 'setTxtProgressBar'
Undefined global functions or variables:
  setTxtProgressBar txtProgressBar
Consider adding
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Package vignette with placeholder title 'Vignette Title':
  'developing-with-mlapi.Rmd'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mleap.Rcheck/00install.out' for details.
Unexported objects imported by ':::' calls:
  'MASS:::lda.default' 'MASS:::qda.default'
  'e1071:::naiveBayes.default' 'e1071:::svm.default'
  'randomForest:::randomForest.default'
  See the note in ?`:::` about the use of this operator.
confusionBarplot: no visible global function definition for 'par'
confusionBarplot: no visible global function definition for 'barplot'
confusionBarplot: no visible global function definition for 'lines'
confusionBarplot: no visible global function definition for 'text'
confusionBarplot: no visible global function definition for 'legend'
confusionBarplot: no visible global function definition for 'axis'
confusionImage: no visible global function definition for 'par'
confusionImage: no visible global function definition for 'image'
confusionImage: no visible global function definition for 'text'
confusionImage: no visible global function definition for 'abline'
confusionImage: no visible global function definition for 'axis'
confusionImage: no visible global function definition for 'mtext'
confusionStars: no visible global function definition for 'par'
confusionStars: no visible global function definition for 'stars'
confusionStars: no visible global function definition for 'rect'
Undefined global functions or variables:
  abline axis barplot image legend lines mtext par rect stars text
Consider adding
  importFrom("graphics", "abline", "axis", "barplot", "image", "legend",
             "lines", "mtext", "par", "rect", "stars", "text")
to your NAMESPACE file.
plotCDF1: no visible global function definition for 'lines'
plotCDF2: no visible global function definition for 'gray'
plotCDF2: no visible global function definition for 'image'
plotCDF2: no visible global function definition for 'box'
plotCDF2: no visible global function definition for 'par'
plotCDF2: no visible global function definition for 'rect'
plotCDF2: no visible global function definition for 'text'
plotCM: no visible global function definition for 'image'
plotCM: no visible global function definition for 'axis'
plotCM: no visible global function definition for 'box'
plotDens1: no visible global function definition for 'lines'
plotDens2: no visible global function definition for 'gray'
plotDens2: no visible global function definition for 'rect'
plotDens2: no visible global function definition for 'axis'
plotDens2: no visible global function definition for 'text'
plotHM: no visible global function definition for 'terrain.colors'
plotHM: no visible global function definition for 'image'
plotHM: no visible global function definition for 'box'
plotHM: no visible global function definition for 'abline'
plotHM: no visible global function definition for 'text'
plotHM: no visible global function definition for 'par'
plotHM: no visible global function definition for 'rect'
plotRects: no visible global function definition for 'rainbow'
plotRects: no visible global function definition for 'abline'
plotRects: no visible global function definition for 'rect'
Undefined global functions or variables:
  abline axis box gray image lines par rainbow rect terrain.colors text
Consider adding
  importFrom("grDevices", "gray", "rainbow", "terrain.colors")
  importFrom("graphics", "abline", "axis", "box", "image", "lines",
             "par", "rect", "text")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mlergm.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
dftest: no visible global function definition for 'slot'
mctest: no visible global function definition for 'rnorm'
mleurDiag: no visible global function definition for 'acf'
mleurDiag: no visible global function definition for 'pchisq'
mleurDiag: no visible global function definition for 'par'
mleurDiag: no visible global function definition for 'boxplot'
mleurDiag: no visible global function definition for 'shapiroTest'
mleurDiag: no visible global function definition for 'title'
mleurDiag: no visible global function definition for 'abline'
mleurDiag: no visible global function definition for 'lines'
simar1: no visible global function definition for 'rnorm'
simar1: no visible global function definition for 'rt'
simar1: no visible global function definition for 'convolve'
Undefined global functions or variables:
  abline acf boxplot convolve lines par pchisq rnorm rt shapiroTest
  slot title
Consider adding
  importFrom("graphics", "abline", "boxplot", "lines", "par", "title")
  importFrom("methods", "slot")
  importFrom("stats", "acf", "convolve", "pchisq", "rnorm", "rt")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Packages in Depends field not imported from:
  'methods' 'seqinr'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
CheckStability: no visible global function definition for 'cor'
CheckStability: no visible global function definition for 'var'
PriorNormPCA: no visible global function definition for 'barplot'
SortModes: no visible global function definition for 'rnorm'
mlicaMAIN: no visible global function definition for 'runif'
Undefined global functions or variables:
  barplot cor rnorm runif var
Consider adding
  importFrom("graphics", "barplot")
  importFrom("stats", "cor", "rnorm", "runif", "var")
to your NAMESPACE file.
Packages in Depends field not imported from:
  'BMA' 'abind' 'maxLik'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mlogit.Rcheck/00install.out' for details.
listGenoToTable: no visible binding for global variable 'dummy'
Undefined global functions or variables:
  dummy
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mlr3db.Rcheck/00install.out' for details.
Running 'testthat.R' [11s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(mlr3filters)
  > 
  > test_check("mlr3filters")
  -- 1. Error: FilterImportance (@test_FilterFindCorrelation.R#13)  --------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. base::lapply(checkpoints, caret::findCorrelation, x = cm, exact = FALSE)
    3. caret::findCorrelation
    4. base::getExportedValue(pkg, name)
    5. base::asNamespace(ns)
    6. base::getNamespace(ns)
    7. base::loadNamespace(name)
    9. base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
   12. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   13. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 420 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: FilterImportance (@test_FilterFindCorrelation.R#13) 
  
  Error: testthat unit tests failed
  Execution halted
Running examples in 'mlr3pipelines-Ex.R' failed
The error most likely occurred in:

> ### Name: mlr_pipeops_boxcox
> ### Title: PipeOpBoxCox
> ### Aliases: mlr_pipeops_boxcox PipeOpBoxCox
> 
> ### ** Examples
> 
> library("mlr3")
> 
> task = tsk("iris")
> pop = po("boxcox")
> 
> task$data()
       Species Petal.Length Petal.Width Sepal.Length Sepal.Width
  1:    setosa          1.4         0.2          5.1         3.5
  2:    setosa          1.4         0.2          4.9         3.0
  3:    setosa          1.3         0.2          4.7         3.2
  4:    setosa          1.5         0.2          4.6         3.1
  5:    setosa          1.4         0.2          5.0         3.6
 ---                                                            
146: virginica          5.2         2.3          6.7         3.0
147: virginica          5.0         1.9          6.3         2.5
148: virginica          5.2         2.0          6.5         3.0
149: virginica          5.4         2.3          6.2         3.4
150: virginica          5.1         1.8          5.9         3.0
> pop$train(list(task))[[1]]$data()
Error: The following packages could not be loaded: bestNormalize
Execution halted
Running 'testthat.R' [165s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("checkmate")
  > library("testthat")
  > library("mlr3")
  > library("paradox")
  > library("mlr3pipelines")
  > 
  > test_check("mlr3pipelines")
  Training debug.multi with input list(input_1 = 1, input_2 = 1)
  -- 1. Error: PipeOpBoxCox - receive expected result (@test_pipeop_boxcox.R#20)  
  The following packages could not be loaded: bestNormalize
  Backtrace:
   1. mlr3pipelines:::train_pipeop(op, inputs = list(task))
   2. po$train(inputs) d:\RCompile\CRANpkg\local\4.0\mlr3pipelines.Rcheck\tests\testthat\helper_functions.R:394:2
   3. mlr3misc::require_namespaces(self$packages)
  
  -- 2. Error: PipeOpYeoJohnson - receive expected result (@test_pipeop_yeojohnson
  The following packages could not be loaded: bestNormalize
  Backtrace:
   1. mlr3pipelines:::train_pipeop(op, inputs = list(task))
   2. po$train(inputs) d:\RCompile\CRANpkg\local\4.0\mlr3pipelines.Rcheck\tests\testthat\helper_functions.R:394:2
   3. mlr3misc::require_namespaces(self$packages)
  
  == testthat results  ===========================================================
  [ OK: 9698 | SKIPPED: 67 | WARNINGS: 6 | FAILED: 2 ]
  1. Error: PipeOpBoxCox - receive expected result (@test_pipeop_boxcox.R#20) 
  2. Error: PipeOpYeoJohnson - receive expected result (@test_pipeop_yeojohnson.R#17) 
  
  Error: testthat unit tests failed
  Execution halted
Depends: includes the non-default packages:
  'mlr3', 'mlr3filters', 'mlr3learners', 'mlr3pipelines', 'mlr3tuning',
  'mlr3viz', 'paradox'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mlrCPO.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mlrMBO.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mlr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mlVAR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MLZ.Rcheck/00install.out' for details.
installed size is 15.6Mb
  sub-directories of 1Mb or more:
    images   1.1Mb
    shiny   14.5Mb
Malformed Description field: should contain one or more complete sentences.
mmm2: no visible global function definition for 'model.frame'
mmm2: no visible global function definition for 'model.matrix'
mmm2: no visible global function definition for 'model.response'
mmm2: no visible global function definition for 'as.formula'
Undefined global functions or variables:
  as.formula model.frame model.matrix model.response
Consider adding
  importFrom("stats", "as.formula", "model.frame", "model.matrix",
             "model.response")
to your NAMESPACE file.
Namespace with empty importFrom: 'gee'
Malformed Description field: should contain one or more complete sentences.
mmm: no visible global function definition for 'model.frame'
mmm: no visible global function definition for 'model.matrix'
mmm: no visible global function definition for 'model.response'
mmm: no visible global function definition for 'as.formula'
mmm: no visible global function definition for 'gee'
Undefined global functions or variables:
  as.formula gee model.frame model.matrix model.response
Consider adding
  importFrom("stats", "as.formula", "model.frame", "model.matrix",
             "model.response")
to your NAMESPACE file.
get.score: no visible global function definition for 'sd'
get.score: no visible global function definition for 'coef'
get.score: no visible global function definition for 'as'
get.score.main: no visible global function definition for 'sd'
get.score.main: no visible global function definition for 'coef'
get.subgroup: no visible global function definition for 'sd'
sample.tte: no visible global function definition for 'runif'
Undefined global functions or variables:
  as coef runif sd
Consider adding
  importFrom("methods", "as")
  importFrom("stats", "coef", "runif", "sd")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mmod.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mnis.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mnlogit.Rcheck/00install.out' for details.
sadmvng: no visible global function definition for 'cov2cor'
sadmvng: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  cov2cor pnorm
Consider adding
  importFrom("stats", "cov2cor", "pnorm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mnreadR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MobileTrigger.Rcheck/00install.out' for details.
Package which this enhances but not available for checking: 'MoBPSmaps'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/modchart.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'modcmfitrOverview.Rmd' using rmarkdown
Quitting from lines 417-461 (modcmfitrOverview.Rmd) 
Error: processing vignette 'modcmfitrOverview.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'modcmfitrOverview.Rmd'

SUMMARY: processing the following file failed:
  'modcmfitrOverview.Rmd'

Error: Vignette re-building failed.
Execution halted
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(modelbased)
  > 
  > test_check("modelbased")
  -- 1. Error: estimate_slopes (@test-estimate_slopes.R#3)  ----------------------
  package or namespace load failed for 'rstanarm' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(rstanarm)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 32 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: estimate_slopes (@test-estimate_slopes.R#3) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Modelcharts.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/modeldb.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'SparseM' which was already attached by Depends.
  Please remove these calls from your code.
'library' or 'require' call to 'glmnet' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/modelgrid.Rcheck/00install.out' for details.
Running examples in 'modelplotr-Ex.R' failed
The error most likely occurred in:

> ### Name: build_input_yourself
> ### Title: Example: build required input from a custom model
> ### Aliases: build_input_yourself
> 
> ### ** Examples
> 
> # load example data (Bank clients with/without a term deposit - see ?bank_td for details)
> data("bank_td")
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Error(s) in re-building vignettes:
--- re-building 'modelplotr.Rmd' using rmarkdown
Quitting from lines 198-216 (modelplotr.Rmd) 
Error: processing vignette 'modelplotr.Rmd' failed with diagnostics:
DLL 'mlr' not found: maybe not installed for this architecture?
--- failed re-building 'modelplotr.Rmd'

SUMMARY: processing the following file failed:
  'modelplotr.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/modelr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/modelsummary.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/modeltime.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/moderndive.Rcheck/00install.out' for details.
'library' or 'require' calls to packages already attached by Depends:
  'date' 'raster' 'rgdal' 'sfsmisc'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'date' 'raster' 'rgdal' 'sfsmisc' 'sp'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Running examples in 'MODIS-Ex.R' failed
The error most likely occurred in:

> ### Name: getTile
> ### Title: Get MODIS Tile ID(s)
> ### Aliases: getTile getTile,missing,missing,missing-method
> ###   getTile,missing,charORnum,charORnum-method
> ###   getTile,character,ANY,ANY-method getTile,character-method
> ###   getTile,Raster,ANY,ANY-method getTile,Raster-method
> ###   getTile,map,ANY,ANY-method getTile,map-method
> ###   getTile,Extent,ANY,ANY-method getTile,Extent-method
> ###   getTile,bbox,ANY,ANY-method getTile,bbox-method
> ###   getTile,Spatial,ANY,ANY-method getTile,Spatial-method
> ###   getTile,sf,ANY,ANY-method getTile,sf-method
> 
> ### ** Examples
> 
> ## Not run: 
> ##D # ex 1 ############
> ##D # interactive tile selection
> ##D getTile()
> ##D getTile(mode = "draw")
> ## End(Not run)
> 
> # ex 2: Spatial (taken from ?rgdal::readOGR) ############
> dsn <- system.file("vectors/Up.tab", package = "rgdal")[1]
> Up <- rgdal::readOGR(dsn, "Up")
Warning in OGRSpatialRef(dsn, layer, morphFromESRI = morphFromESRI, dumpSRS = dumpSRS,  :
  Discarded datum South_American_Datum_1969 in CRS definition: +proj=utm +zone=23 +south +ellps=aust_SA +units=m +no_defs
OGR data source with driver: MapInfo File 
Source: "D:\temp\RtmpaMFDq6\RLIBS_2f0871216b19\rgdal\vectors\Up.tab", layer: "Up"
with 81 features
It has 52 fields
> getTile(Up)
Error in st_filter.sf(sr, x) : dplyr is not installed: install first?
Calls: getTile ... suppressMessages -> withCallingHandlers -> <Anonymous> -> st_filter.sf
Execution halted
Error(s) in re-building vignettes:
--- re-building 'modistools-vignette.Rmd' using rmarkdown
Quitting from lines 13-30 (modistools-vignette.Rmd) 
Error: processing vignette 'modistools-vignette.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'modistools-vignette.Rmd'

SUMMARY: processing the following file failed:
  'modistools-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
.clustOrder: no visible global function definition for 'hclust'
.clustOrder: no visible global function definition for 'as.dist'
consensusMEDissimilarity: no visible global function definition for
  'cor'
mergeCloseModules: no visible global function definition for 'cor'
mergeCloseModules: no visible global function definition for 'hclust'
mergeCloseModules: no visible global function definition for 'as.dist'
moduleEigengenes: no visible global function definition for 'cor'
moduleEigengenes: no visible global function definition for 'cov'
moduleNumber: no visible global function definition for 'cutree'
orderMEs: no visible global function definition for 'cor'
orderMEs: no visible global function definition for 'as.dist'
plotHclustColors: no visible global function definition for 'barplot'
plotHclustColors: no visible global function definition for 'strwidth'
plotHclustColors: no visible global function definition for 'rect'
plotHclustColors: no visible global function definition for 'text'
plotHclustColors: no visible global function definition for 'lines'
Undefined global functions or variables:
  as.dist barplot cor cov cutree hclust lines rect strwidth text
Consider adding
  importFrom("graphics", "barplot", "lines", "rect", "strwidth", "text")
  importFrom("stats", "as.dist", "cor", "cov", "cutree", "hclust")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'Basic_Usage.Rmd' using rmarkdown
Quitting from lines 106-114 (Basic_Usage.Rmd) 
Error: processing vignette 'Basic_Usage.Rmd' failed with diagnostics:
package or namespace load failed for 'smoof' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Basic_Usage.Rmd'

--- re-building 'Comparison_Usage.Rmd' using rmarkdown
--- finished re-building 'Comparison_Usage.Rmd'

--- re-building 'Modification_Usage.Rmd' using rmarkdown
Quitting from lines 70-94 (Modification_Usage.Rmd) 
Error: processing vignette 'Modification_Usage.Rmd' failed with diagnostics:
package or namespace load failed for 'smoof' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Modification_Usage.Rmd'

--- re-building 'problem-definition.Rmd' using rmarkdown
--- finished re-building 'problem-definition.Rmd'

--- re-building 'writing-functions-for-moeadr.Rmd' using rmarkdown
--- finished re-building 'writing-functions-for-moeadr.Rmd'

SUMMARY: processing the following files failed:
  'Basic_Usage.Rmd' 'Modification_Usage.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is 24.0Mb
  sub-directories of 1Mb or more:
    doc  23.1Mb
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    extdata   1.6Mb
    libs      2.4Mb
Running examples in 'molic-Ex.R' failed
The error most likely occurred in:

> ### Name: fit_mixed_outlier
> ### Title: Mixed Outlier Test
> ### Aliases: fit_mixed_outlier
> 
> ### ** Examples
> 
> 
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Error(s) in re-building vignettes:
--- re-building 'dermatitis.Rmd' using rmarkdown
Quitting from lines 62-68 (dermatitis.Rmd) 
Error: processing vignette 'dermatitis.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'dermatitis.Rmd'

--- re-building 'genetic_example.Rmd' using rmarkdown

Attaching package: 'molic'

The following object is masked from 'package:stats':

    deviance

Quitting from lines 32-55 (genetic_example.Rmd) 
Error: processing vignette 'genetic_example.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'genetic_example.Rmd'

--- re-building 'outlier_intro.Rmd' using rmarkdown
Quitting from lines 52-70 (outlier_intro.Rmd) 
Error: processing vignette 'outlier_intro.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'outlier_intro.Rmd'

SUMMARY: processing the following files failed:
  'dermatitis.Rmd' 'genetic_example.Rmd' 'outlier_intro.Rmd'

Error: Vignette re-building failed.
Execution halted
agostino.test: no visible global function definition for
  'complete.cases'
agostino.test: no visible global function definition for 'pnorm'
anscombe.test: no visible global function definition for
  'complete.cases'
anscombe.test: no visible global function definition for 'pnorm'
bonett.test: no visible global function definition for 'complete.cases'
bonett.test: no visible global function definition for 'pnorm'
jarque.test: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  complete.cases pchisq pnorm
Consider adding
  importFrom("stats", "complete.cases", "pchisq", "pnorm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/momentuHMM.Rcheck/00install.out' for details.
Running examples in 'Momocs-Ex.R' failed
The error most likely occurred in:

> ### Name: CLUST
> ### Title: Hierarchical clustering
> ### Aliases: CLUST CLUST.default CLUST.Coe
> 
> ### ** Examples
> 
> # On Coe
> bf <- bot %>% efourier(6)
`norm=TRUE` is used and this may be troublesome. See ?efourier
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/temp/RtmpUj7tsa/RLIBS_1d31072d55c38/dplyr/libs/x64/dplyr.dll':
  LoadLibrary failure:  Das angegebene Modul wurde nicht gefunden.
Calls: %>% ... getNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
Warning: no function found corresponding to methods exports from 'mondate' for: 'show'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
.date.to.mondate: no visible global function definition for 'new'
as.character.mondate: no visible global function definition for 'slot'
Arith,array-mondate: no visible global function definition for
  'callGeneric'
Arith,mondate-array: no visible global function definition for
  'callGeneric'
Arith,mondate-mondate: no visible global function definition for
  'callGeneric'
Arith,mondate-numeric: no visible global function definition for
  'callGeneric'
Arith,numeric-mondate: no visible global function definition for
  'callGeneric'
Compare,mondate-ANY: no visible global function definition for
  'callGeneric'
Compare,mondate-ANY: no visible global function definition for
  'getDataPart'
Summary,mondate: no visible global function definition for
  'callGeneric'
[,mondate: no visible global function definition for 'callNextMethod'
[,mondate: no visible global function definition for 'new'
array,mondate: no visible global function definition for
  'callNextMethod'
as.numeric,mondate: no visible global function definition for 'slot'
c,mondate: no visible global function definition for 'new'
c,mondate: no visible binding for global variable 'getDataPart'
c,mondate: no visible global function definition for 'getDataPart'
matrix,mondate: no visible global function definition for
  'callNextMethod'
mondate,Date: no visible global function definition for 'new'
mondate,POSIXt: no visible global function definition for 'new'
mondate,missing: no visible global function definition for 'new'
mondate,mondate: no visible global function definition for 'new'
mondate,numeric: no visible global function definition for 'new'
Undefined global functions or variables:
  callGeneric callNextMethod getDataPart new slot
Consider adding
  importFrom("methods", "callGeneric", "callNextMethod", "getDataPart",
             "new", "slot")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    libs   7.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MonoInc.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'MonteCarlo-Vignette.Rmd' using rmarkdown
Quitting from lines 316-320 (MonteCarlo-Vignette.Rmd) 
Error: processing vignette 'MonteCarlo-Vignette.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'MonteCarlo-Vignette.Rmd'

SUMMARY: processing the following file failed:
  'MonteCarlo-Vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/moonBook.Rcheck/00install.out' for details.
mopsocd : initialize_pop: no visible global function definition for
  'runif'
mopsocd : compute_velocity: no visible global function definition for
  'runif'
mopsocd : mutate: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
checkTH: no visible global function definition for 'pchisq'
getOrderPval: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  pchisq
Consider adding
  importFrom("stats", "pchisq")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'Titanic_example.Rmd' using rmarkdown
Quitting from lines 44-56 (Titanic_example.Rmd) 
Error: processing vignette 'Titanic_example.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Titanic_example.Rmd'

SUMMARY: processing the following file failed:
  'Titanic_example.Rmd'

Error: Vignette re-building failed.
Execution halted
ametrine : <anonymous>: no visible global function definition for
  'approx'
ametrine: no visible global function definition for 'rgb'
isolum : <anonymous>: no visible global function definition for
  'approx'
isolum: no visible global function definition for 'rgb'
morgenstemning : <anonymous>: no visible global function definition for
  'approx'
morgenstemning: no visible global function definition for 'rgb'
Undefined global functions or variables:
  approx rgb
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("stats", "approx")
to your NAMESPACE file.
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data   2.0Mb
    libs   3.1Mb
Malformed Title field: should not end in a period.
cor.gen: no visible global function definition for 'rnorm'
cor.gen: no visible global function definition for 'resid'
cor.gen: no visible global function definition for 'lm'
cor.gen: no visible binding for global variable 'sd'
cor.gen: no visible global function definition for 'cor'
cor.gen: no visible global function definition for 'write.table'
stat.gen: no visible global function definition for 'rexp'
stat.gen: no visible global function definition for 'rnorm'
stat.gen: no visible binding for global variable 'sd'
stat.gen: no visible global function definition for 'write.table'
Undefined global functions or variables:
  cor lm resid rexp rnorm sd write.table
Consider adding
  importFrom("stats", "cor", "lm", "resid", "rexp", "rnorm", "sd")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/morse.Rcheck/00install.out' for details.
Running 'testthat.R' [9s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(mortAAR)
  > 
  > test_check("mortAAR")
  -- 1. Error: life.table does the mathing correctly  ----------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. dplyr::near
   2. base::getExportedValue(pkg, name)
   3. base::asNamespace(ns)
   4. base::getNamespace(ns)
   5. base::loadNamespace(name)
   6. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 81 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: life.table does the mathing correctly 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'mortAAR_vignette-1.Rmd' using rmarkdown
Quitting from lines 63-65 (mortAAR_vignette-1.Rmd) 
Error: processing vignette 'mortAAR_vignette-1.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'mortAAR_vignette-1.Rmd'

--- re-building 'mortAAR_vignette_extended.Rmd' using rmarkdown
Quitting from lines 76-77 (mortAAR_vignette_extended.Rmd) 
Error: processing vignette 'mortAAR_vignette_extended.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'mortAAR_vignette_extended.Rmd'

SUMMARY: processing the following files failed:
  'mortAAR_vignette-1.Rmd' 'mortAAR_vignette_extended.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MortalityLaws.Rcheck/00install.out' for details.
Mort1Dsmooth: no visible global function definition for 'time'
Mort1Dsmooth: no visible global function definition for 'glm'
Mort1Dsmooth: no visible binding for global variable 'poisson'
Mort1Dsmooth_optimize: no visible global function definition for
  'median'
Mort2Dsmooth: no visible global function definition for 'glm'
Mort2Dsmooth: no visible binding for global variable 'poisson'
Mort2Dsmooth: no visible global function definition for 'median'
Mort2Dsmooth_optimize: no visible global function definition for
  'median'
plot.Mort1Dsmooth: no visible global function definition for 'matplot'
plot.Mort2Dsmooth: no visible global function definition for 'quantile'
predict.Mort1Dsmooth: no visible global function definition for 'glm'
predict.Mort1Dsmooth: no visible binding for global variable 'poisson'
predict.Mort2Dsmooth: no visible global function definition for 'glm'
predict.Mort2Dsmooth: no visible binding for global variable 'poisson'
print.summary.Mort1Dsmooth: no visible global function definition for
  'quantile'
print.summary.Mort2Dsmooth: no visible global function definition for
  'quantile'
Undefined global functions or variables:
  glm matplot median poisson quantile time
Consider adding
  importFrom("graphics", "matplot")
  importFrom("stats", "glm", "median", "poisson", "quantile", "time")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mosaicCalc.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mosaicCore.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mosaicModel.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mosaic.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mosmafs.Rcheck/00install.out' for details.
getmouseDV: no visible global function definition for 'tail'
interpltraj: no visible global function definition for 'approx'
trim1: no visible global function definition for 'tail'
Undefined global functions or variables:
  approx tail
Consider adding
  importFrom("stats", "approx")
  importFrom("utils", "tail")
to your NAMESPACE file.
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    data   2.0Mb
    libs   2.5Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/moveHMM.Rcheck/00install.out' for details.
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    R      1.1Mb
    libs   1.9Mb
Error(s) in re-building vignettes:
--- re-building 'browseMovebank.Rmd' using rmarkdown
--- finished re-building 'browseMovebank.Rmd'

--- re-building 'move.Rmd' using rmarkdown
Loading required package: geosphere
Loading required package: sp
Loading required package: raster
Loading required package: rgdal
rgdal: version: 1.5-16, (SVN revision 1050)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 3.0.4, released 2020/01/28
Path to GDAL shared files: D:/temp/Rtmp0Klc6u/RLIBS_10f681bac4e6b/rgdal/gdal
GDAL binary built with GEOS: TRUE 
Loaded PROJ runtime: Rel. 6.3.1, February 10th, 2020, [PJ_VERSION: 631]
Path to PROJ shared files: D:/temp/Rtmp0Klc6u/RLIBS_10f681bac4e6b/rgdal/proj
Linking to sp version:1.4-2
To mute warnings of possible GDAL/OSR exportToProj4() degradation,
use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.

Attaching package: 'lubridate'

The following objects are masked from 'package:raster':

    intersect, union

The following objects are masked from 'package:base':

    date, intersect, setdiff, union

Quitting from lines 352-357 (move.Rmd) 
Error: processing vignette 'move.Rmd' failed with diagnostics:
package or namespace load failed for 'ggmap' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'move.Rmd'

SUMMARY: processing the following file failed:
  'move.Rmd'

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: 'corpus.useR.2008.abstracts'
Package vignette with placeholder title 'Vignette Title':
  'mozzie.Rmd'
Malformed Description field: should contain one or more complete sentences.
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File 'mpa/R/zzz.R':
  .First.lib calls:
    cat("\n mpa: CoWords Method")
    cat("\n ")
    cat("\n Universidad Nacional de Colombia")
    cat("\n ")
    cat("\n Elaborado por: Daniel Rodriguez <dhrodriguezt@unal.edu.co>")
    cat("\n                Campo Elias Pardo <cepardot@unal.edu.co>")
    cat("\n For help: ?mpa   \n\n")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.

diagram.mpa: no visible global function definition for 'abline'
diagram.mpa: no visible global function definition for 'text'
Undefined global functions or variables:
  abline text
Consider adding
  importFrom("graphics", "abline", "text")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mpbart.Rcheck/00install.out' for details.
mpcv: no visible binding for global variable 'median'
mpcv: no visible global function definition for 'cov'
mpcv: no visible global function definition for 'dist'
plot.mpcv: no visible binding for global variable 'median'
plot.mpcv: no visible global function definition for 'par'
plot.mpcv: no visible global function definition for 'rect'
plot.mpcv: no visible global function definition for 'lines'
plot.mpcv: no visible global function definition for 'points'
plot.mpcv: no visible global function definition for 'legend'
Undefined global functions or variables:
  cov dist legend lines median par points rect
Consider adding
  importFrom("graphics", "legend", "lines", "par", "points", "rect")
  importFrom("stats", "cov", "dist", "median")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Malformed Title field: should not end in a period.
GetExampleData: no visible binding for global variable 'MPINetData'
Getenvir: no visible binding for global variable 'MPINetData'
getPSS: no visible global function definition for 'lines'
performpcls: no visible global function definition for 'binomial'
Undefined global functions or variables:
  MPINetData binomial lines
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "binomial")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mplot.Rcheck/00install.out' for details.
installed size is 17.8Mb
  sub-directories of 1Mb or more:
    R             1.1Mb
    libs         13.9Mb
    mathematica   1.5Mb
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'KernSmooth' 'MASS'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
export.summary.mpm: warning in complex(real = x$Rows[, FdimsR[1]], imag
  = x$Rows[, FdimsR[2]]): partial argument match of 'imag' to
  'imaginary'
export.summary.mpm: warning in complex(real = x$Columns[, FdimsC[1]],
  imag = x$Columns[, FdimsC[2]]): partial argument match of 'imag' to
  'imaginary'
.onAttach: no visible global function definition for
  'packageDescription'
export.summary.mpm: no visible global function definition for
  'write.table'
mpm: no visible binding for global variable 'median'
plot.mpm: no visible global function definition for 'rainbow'
plot.mpm: no visible global function definition for 'quantile'
plot.mpm: no visible global function definition for 'par'
plot.mpm: no visible global function definition for 'points'
plot.mpm: no visible global function definition for 'smoothScatter'
plot.mpm: no visible global function definition for 'colorRampPalette'
plot.mpm: no visible global function definition for 'symbols'
plot.mpm: no visible global function definition for 'text'
plot.mpm: no visible global function definition for 'lines'
plot.mpm: no visible global function definition for 'box'
Undefined global functions or variables:
  box colorRampPalette lines median packageDescription par points
  quantile rainbow smoothScatter symbols text write.table
Consider adding
  importFrom("grDevices", "colorRampPalette", "rainbow")
  importFrom("graphics", "box", "lines", "par", "points",
             "smoothScatter", "symbols", "text")
  importFrom("stats", "median", "quantile")
  importFrom("utils", "packageDescription", "write.table")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mpoly.Rcheck/00install.out' for details.
place: no visible global function definition for 'points'
plot,mproc: no visible binding for global variable 'rainbow'
plot,mproc: no visible global function definition for 'plot.default'
plot,mproc: no visible global function definition for 'axis'
plot,mproc: no visible global function definition for 'points'
Undefined global functions or variables:
  axis plot.default points rainbow
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "axis", "plot.default", "points")
to your NAMESPACE file.
Running examples in 'MPTmultiverse-Ex.R' failed
The error most likely occurred in:

> ### Name: check_results
> ### Title: Check results from MPTmultiverse
> ### Aliases: check_results write_check_results check_set
> 
> ### ** Examples
> 
> load(file = system.file("extdata", "results_bayen_kuhlmann.RData",
+                         package = "MPTmultiverse"))
> ## prints checks to console
> check_results(results)
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/temp/RtmpawmKq0/RLIBS_b26459c545cf/dplyr/libs/x64/dplyr.dll':
  LoadLibrary failure:  Das angegebene Modul wurde nicht gefunden.
Calls: check_results ... getNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(MPTmultiverse)
  > 
  > test_check("MPTmultiverse")
  Setting options for a quick test run.
  Do not interpret results!-- 1. Error: No-pooling approaches work (@test-mptinr.R#25)  -------------------
  unable to load shared object 'D:/temp/RtmpawmKq0/RLIBS_b264541e5e/dplyr/libs/x64/dplyr.dll':
    LoadLibrary failure:  Das angegebene Modul wurde nicht gefunden.
  Backtrace:
    1. MPTmultiverse::fit_mpt(...)
    2. MPTmultiverse:::mpt_mptinr(...)
    3. dplyr::bind_rows
    4. base::getExportedValue(pkg, name)
    5. base::asNamespace(ns)
    6. base::getNamespace(ns)
    7. base::loadNamespace(name)
    8. base::library.dynam(lib, package, package.lib)
    9. base::dyn.load(file, DLLpath = DLLpath, ...)
   10. base:::inDL(x, as.logical(local), as.logical(now), ...)
  
  -- 2. Error: Complete-pooling approaches work (@test-mptinr.R#272)  ------------
  unable to load shared object 'D:/temp/RtmpawmKq0/RLIBS_b264541e5e/dplyr/libs/x64/dplyr.dll':
    LoadLibrary failure:  Das angegebene Modul wurde nicht gefunden.
  Backtrace:
    1. MPTmultiverse::fit_mpt(...)
    2. MPTmultiverse:::mpt_mptinr(...)
    3. dplyr::bind_rows
    4. base::getExportedValue(pkg, name)
    5. base::asNamespace(ns)
    6. base::getNamespace(ns)
    7. base::loadNamespace(name)
    8. base::library.dynam(lib, package, package.lib)
    9. base::dyn.load(file, DLLpath = DLLpath, ...)
   10. base:::inDL(x, as.logical(local), as.logical(now), ...)
  
  == testthat results  ===========================================================
  [ OK: 6 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: No-pooling approaches work (@test-mptinr.R#25) 
  2. Error: Complete-pooling approaches work (@test-mptinr.R#272) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'introduction-bayen_kuhlmann_2011.rmd' using rmarkdown
Quitting from lines 185-186 (introduction-bayen_kuhlmann_2011.rmd) 
Error: processing vignette 'introduction-bayen_kuhlmann_2011.rmd' failed with diagnostics:
unable to load shared object 'D:/temp/RtmpawmKq0/RLIBS_b26459c545cf/dplyr/libs/x64/dplyr.dll':
  LoadLibrary failure:  Das angegebene Modul wurde nicht gefunden.

--- failed re-building 'introduction-bayen_kuhlmann_2011.rmd'

SUMMARY: processing the following file failed:
  'introduction-bayen_kuhlmann_2011.rmd'

Error: Vignette re-building failed.
Execution halted
ppersp: no visible global function definition for 'colorRampPalette'
Undefined global functions or variables:
  colorRampPalette
Consider adding
  importFrom("grDevices", "colorRampPalette")
to your NAMESPACE file.
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    libs   6.5Mb
GNU make is a SystemRequirements.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
densityfn: no visible global function definition for 'dnbinom'
densityfn: no visible global function definition for 'dpois'
densityfn: no visible global function definition for 'dgeom'
form.add: no visible global function definition for 'formula'
mreg: no visible global function definition for 'model.frame'
mreg: no visible global function definition for 'model.response'
mreg: no visible global function definition for 'model.matrix'
mreg: no visible global function definition for 'model.offset'
mreg: no visible global function definition for 'nlm'
paper: no visible global function definition for 'model.matrix'
randfn: no visible global function definition for 'rnbinom'
randfn: no visible global function definition for 'rpois'
randfn: no visible global function definition for 'rgeom'
randfn: no visible global function definition for 'rbinom'
summary.mreg: no visible global function definition for 'pnorm'
summary.mreg: no visible global function definition for 'printCoefmat'
Undefined global functions or variables:
  dgeom dnbinom dpois formula model.frame model.matrix model.offset
  model.response nlm pnorm printCoefmat rbinom rgeom rnbinom rpois
Consider adding
  importFrom("stats", "dgeom", "dnbinom", "dpois", "formula",
             "model.frame", "model.matrix", "model.offset",
             "model.response", "nlm", "pnorm", "printCoefmat", "rbinom",
             "rgeom", "rnbinom", "rpois")
to your NAMESPACE file.
Running examples in 'MRFcov-Ex.R' failed
The error most likely occurred in:

> ### Name: MRFcov
> ### Title: Markov Random Fields with covariates
> ### Aliases: MRFcov
> 
> ### ** Examples
> 
> data("Bird.parasites")
> CRFmod <- MRFcov(data = Bird.parasites, n_nodes = 4, family = 'binomial')
Leave-one-out cv used for the following low-occurrence (rare) nodes:
 Microfilaria ...
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: MRFcov ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Bird_Parasite_CRF.Rmd' using rmarkdown
Loading required package: glmnet
Loading required package: Matrix
Loaded glmnet 4.0-2
Welcome to MRFcov. If you use the package, please cite as: Clark, NJ, Wells, K and Lindberg, O. 2018. Unravelling changing interspecific interactions across environmental gradients using Markov random fields. Ecology doi: 10.1002/ecy.2221 
Quitting from lines 39-40 (Bird_Parasite_CRF.Rmd) 
Error: processing vignette 'Bird_Parasite_CRF.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Bird_Parasite_CRF.Rmd'

--- re-building 'CRF_data_prep.Rmd' using rmarkdown
--- finished re-building 'CRF_data_prep.Rmd'

--- re-building 'Gaussian_Poisson_CRFs.Rmd' using rmarkdown
Quitting from lines 51-54 (Gaussian_Poisson_CRFs.Rmd) 
Error: processing vignette 'Gaussian_Poisson_CRFs.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Gaussian_Poisson_CRFs.Rmd'

SUMMARY: processing the following files failed:
  'Bird_Parasite_CRF.Rmd' 'Gaussian_Poisson_CRFs.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   1.6Mb
    libs   3.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mrgsim.parallel.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mrgsolve.Rcheck/00install.out' for details.
Note: significantly better compression could be obtained
        by using R CMD build --resave-data
           old_size new_size compress
  cgps.rda    1.5Mb    1.4Mb       xz
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MRPC.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MRReg.Rcheck/00install.out' for details.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs   3.2Mb
Malformed Title field: should not end in a period.
Packages in Depends field not imported from:
  'mvtnorm' 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
MRsurvival: no visible global function definition for 'rmvnorm'
MRsurvival: no visible global function definition for 'optim'
MRsurvival : <anonymous>: no visible global function definition for
  'quantile'
Undefined global functions or variables:
  optim quantile rmvnorm
Consider adding
  importFrom("stats", "optim", "quantile")
to your NAMESPACE file.
msap: no visible global function definition for 'packageVersion'
msap: no visible global function definition for 'read.csv'
msap: no visible global function definition for 'write.csv'
msap: no visible global function definition for 'sd'
msap: no visible global function definition for 'wilcox.test'
msap: no visible global function definition for 'dist'
msap: no visible global function definition for 'rainbow'
msap: no visible global function definition for 'png'
msap: no visible global function definition for 'legend'
msap: no visible global function definition for 'dev.off'
pcoa: no visible global function definition for 'cmdscale'
pcoa: no visible global function definition for 'png'
pcoa: no visible global function definition for 'par'
pcoa: no visible global function definition for 'rainbow'
pcoa: no visible global function definition for 'points'
pcoa: no visible global function definition for 'dev.off'
pcoa: no visible global function definition for 'write.csv'
Undefined global functions or variables:
  cmdscale dev.off dist legend packageVersion par png points rainbow
  read.csv sd wilcox.test write.csv
Consider adding
  importFrom("grDevices", "dev.off", "png", "rainbow")
  importFrom("graphics", "legend", "par", "points")
  importFrom("stats", "cmdscale", "dist", "sd", "wilcox.test")
  importFrom("utils", "packageVersion", "read.csv", "write.csv")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mscstexta4r.Rcheck/00install.out' for details.
cv.msda: no visible global function definition for 'predict'
formatoutput: no visible global function definition for 'new'
msda.prep: no visible global function definition for 'cov'
plot.msda: no visible global function definition for 'par'
plot.msda: no visible global function definition for 'matplot'
plot.msda: no visible global function definition for 'rainbow'
plot.msda: no visible global function definition for 'approx'
plot.msda: no visible global function definition for 'axis'
predict.msda: no visible binding for global variable 'sd'
predict.msda: no visible global function definition for 'predict'
zeromat: no visible global function definition for 'new'
Undefined global functions or variables:
  approx axis cov matplot new par predict rainbow sd
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "axis", "matplot", "par")
  importFrom("methods", "new")
  importFrom("stats", "approx", "cov", "predict", "sd")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MSEtool.Rcheck/00install.out' for details.
installed size is  9.9Mb
  sub-directories of 1Mb or more:
    libs   9.5Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/msigdbr.Rcheck/00install.out' for details.
MSIseq.classify: no visible global function definition for 'predict'
Undefined global functions or variables:
  predict
Consider adding
  importFrom("stats", "predict")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MSRDT.Rcheck/00install.out' for details.
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    libs   4.8Mb
BS.var: no visible binding for global variable 'var'
BS.var: no visible global function definition for 'cov'
Dist.CIs: no visible global function definition for 'qnorm'
MSM.CIs: no visible global function definition for 'qnorm'
plot,msSurv-missing: no visible global function definition for 'update'
summary,msSurv: no visible global function definition for 'quantile'
Undefined global functions or variables:
  cov qnorm quantile update var
Consider adding
  importFrom("stats", "cov", "qnorm", "quantile", "update", "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mtconnectR.Rcheck/00install.out' for details.
Found the following significant warnings:
  Warning: namespace 'dplyr' is not available and has been replaced
See 'd:/Rcompile/CRANpkg/local/4.0/mtk.Rcheck/00install.out' for details.
'library' or 'require' call to 'MASS' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Designer.sobol: no visible global function definition for 'runif'
basicMonteCarlo: no visible global function definition for 'runif'
lhs003: no visible global function definition for 'runif'
plmm.mtk : GenereXplmm: no visible binding for global variable 'poly'
plmm.mtk : calc.plm: no visible global function definition for 'lm.fit'
plmm.mtk: no visible global function definition for 'var'
plmm.mtk: no visible global function definition for 'lm'
plmm.mtk: no visible global function definition for 'formula'
plmm.mtk: no visible global function definition for 'update'
plmm.mtk: no visible global function definition for 'stepAIC'
plot.plmm: no visible global function definition for 'par'
plot.plmm: no visible global function definition for 'barplot'
plot.plmm: no visible global function definition for 'segments'
plot.plmm: no visible global function definition for 'abline'
plot.plmm: no visible global function definition for 'title'
plot.plmm: no visible global function definition for 'legend'
plot.regressionSI: no visible global function definition for 'par'
plot.regressionSI: no visible global function definition for 'title'
plot.regressionSI: no visible global function definition for 'abline'
plot,mtkProcess: no visible global function definition for 'dev.new'
Undefined global functions or variables:
  abline barplot dev.new formula legend lm lm.fit par poly runif
  segments stepAIC title update var
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "abline", "barplot", "legend", "par",
             "segments", "title")
  importFrom("stats", "formula", "lm", "lm.fit", "poly", "runif",
             "update", "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MtreeRing.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MUACz.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mudata2.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mudfold.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'DiceKriging' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
CrossValidationMuFicokm: no visible global function definition for
  'covMatrix'
CrossValidationMuFicokmAll: no visible global function definition for
  'covMatrix'
MuFicokm: no visible global function definition for 'km'
compute.beta.hat: no visible global function definition for 'lm'
computeAuxVariables: no visible global function definition for
  'covMatrix'
kmCok: no visible global function definition for 'new'
kmCok: no visible global function definition for 'drop.response'
kmCok: no visible global function definition for 'model.matrix'
kmCok: no visible global function definition for 'covStruct.create'
kmCok: no visible global function definition for 'validObject'
kmCok: no visible global function definition for 'covParametersBounds'
kmCok: no visible binding for global variable 'kmEstimate'
kmCok : cv: no visible global function definition for 'leaveOneOut.km'
predict.kmCok: no visible global function definition for 'model.matrix'
predict.kmCok: no visible global function definition for 'covMat1Mat2'
predict.kmCok: no visible global function definition for 'qnorm'
predict.kmCok: no visible global function definition for 'qt'
predict.kmCok: no visible global function definition for 'covMatrix'
summary.MuFicokm: no visible global function definition for
  'covparam2vect'
Undefined global functions or variables:
  covMat1Mat2 covMatrix covParametersBounds covStruct.create
  covparam2vect drop.response km kmEstimate leaveOneOut.km lm
  model.matrix new qnorm qt validObject
Consider adding
  importFrom("methods", "new", "validObject")
  importFrom("stats", "lm", "model.matrix", "qnorm", "qt")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Running examples in 'muHVT-Ex.R' failed
The error most likely occurred in:

> ### Name: HVT
> ### Title: Constructing Hierarchical Voronoi Tessellations
> ### Aliases: HVT
> ### Keywords: hplot
> 
> ### ** Examples
> 
> data(USArrests)
> hvt.results <- list()
> hvt.results <- HVT(USArrests, nclust = 15, depth = 1, quant.err = 0.2, 
+                    distance_metric = "L1_Norm", error_metric = "mean",
+                    projection.scale = 10, normalize = TRUE)
Loading required namespace: deldir
Loading required namespace: Hmisc
Loading required namespace: splancs
Loading required namespace: conf.design
Loading required namespace: dplyr
Failed with error:  'DLL 'dplyr' not found: maybe not installed for this architecture?'
Loading required namespace: dplyr
Failed with error:  'DLL 'dplyr' not found: maybe not installed for this architecture?'
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: HVT ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'muHVT.Rmd' using rmarkdown
Quitting from lines 18-120 (muHVT.Rmd) 
Error: processing vignette 'muHVT.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'muHVT.Rmd'

SUMMARY: processing the following file failed:
  'muHVT.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/muir.Rcheck/00install.out' for details.
Package vignette with placeholder title 'Vignette Title':
  'MullerPlot.Rmd'
multeq.diff: no visible global function definition for 'cov'
multeq.diff: no visible global function definition for 'pt'
multeq.diff: no visible global function definition for 'qt'
multeq.rat: no visible global function definition for 'cov'
multeq.rat: no visible global function definition for 'pt'
multeq.rat: no visible global function definition for 'qt'
Undefined global functions or variables:
  cov pt qt
Consider adding
  importFrom("stats", "cov", "pt", "qt")
to your NAMESPACE file.
plotOptionValues: no visible global function definition for 'persp'
Undefined global functions or variables:
  persp
Consider adding
  importFrom("graphics", "persp")
to your NAMESPACE file.
synthetic_multiband: no visible global function definition for 'runif'
synthetic_multiband: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/multichull.Rcheck/00install.out' for details.
calculate_direction: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  rnorm
Consider adding
  importFrom("stats", "rnorm")
to your NAMESPACE file.
Running examples in 'multicolor-Ex.R' failed
The error most likely occurred in:

> ### Name: center_string
> ### Title: Center all lines of a string relative to console width.
> ### Aliases: center_string
> 
> ### ** Examples
> 
> triangle_string(starwars_intro, display = TRUE) %>%
+   center_string() %>%
+   multi_color(direction = "horizontal", recycle_chars = TRUE)
Colors cannot be applied in this environment. Please use another application, such as RStudio or a color-enabled terminal.
Auto-setting type to string.
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: %>% ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'rmd.Rmd' using rmarkdown
Quitting from lines 30-33 (rmd.Rmd) 
Error: processing vignette 'rmd.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'rmd.Rmd'

SUMMARY: processing the following file failed:
  'rmd.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/multifluo.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/multilevelTools.Rcheck/00install.out' for details.
multinb.fit: no visible global function definition for 'nlminb'
multinbmod: no visible global function definition for 'is.empty.model'
multinbmod: no visible global function definition for 'model.matrix'
multinbmod: no visible binding for global variable 'contrasts'
multinbmod: no visible global function definition for 'model.response'
multinbmod: no visible global function definition for 'model.offset'
Undefined global functions or variables:
  contrasts is.empty.model model.matrix model.offset model.response
  nlminb
Consider adding
  importFrom("stats", "contrasts", "is.empty.model", "model.matrix",
             "model.offset", "model.response", "nlminb")
to your NAMESPACE file.
installed size is  8.9Mb
  sub-directories of 1Mb or more:
    libs   8.7Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/multinma.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'rPorta'
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'rgenoud'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
.onAttach: no visible global function definition for
  'packageDescription'
genoudRob: no visible global function definition for 'genoud'
get.XYdata: no visible global function definition for 'terms'
get.xdata: no visible global function definition for 'terms'
get.xdata: no visible global function definition for 'model.matrix'
get.xy: no visible global function definition for 'terms'
get.xynames: no visible global function definition for 'terms'
get.ydata: no visible global function definition for 'terms'
get.ydata: no visible global function definition for 'model.response'
get.ydata: no visible global function definition for 'model.frame'
mt.dev: no visible global function definition for 'pt'
mt.dev.grad: no visible global function definition for 'pt'
mt.dev.grad: no visible global function definition for 'dt'
mt.mle: no visible global function definition for 'optim'
multinomRob: no visible global function definition for 'var'
plot.multinomRob: no visible global function definition for 'par'
plot.multinomRob: no visible global function definition for 'title'
rdirich: no visible global function definition for 'rgamma'
residual.generator: no visible global function definition for 'median'
rmultinomial: no visible global function definition for 'runif'
rmultinomial: no visible global function definition for 'rbinom'
Undefined global functions or variables:
  dt genoud median model.frame model.matrix model.response optim
  packageDescription par pt rbinom rgamma runif terms title var
Consider adding
  importFrom("graphics", "par", "title")
  importFrom("stats", "dt", "median", "model.frame", "model.matrix",
             "model.response", "optim", "pt", "rbinom", "rgamma",
             "runif", "terms", "var")
  importFrom("utils", "packageDescription")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MultiPhen.Rcheck/00install.out' for details.
multiPIM : expand.factors: no visible global function definition for
  'formula'
multiPIM : expand.factors: no visible global function definition for
  'model.matrix'
multiPIM : <anonymous>: no visible global function definition for 'glm'
multiPIM : <anonymous>: no visible binding for global variable
  'binomial'
multiPIM : <anonymous>: no visible global function definition for
  'qlogis'
multiPIM : <anonymous>: no visible global function definition for
  'as.formula'
multiPIM : <anonymous>: no visible global function definition for 'lm'
multiPIM: no visible global function definition for 'glm'
multiPIM: no visible global function definition for 'qlogis'
multiPIM: no visible binding for global variable 'binomial'
multiPIM: no visible global function definition for 'plogis'
multiPIM: no visible global function definition for 'sd'
multiPIM: no visible global function definition for 'lm'
summary.multiPIM: no visible binding for global variable 'sd'
summary.multiPIM: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  as.formula binomial formula glm lm model.matrix plogis pnorm qlogis
  sd
Consider adding
  importFrom("stats", "as.formula", "binomial", "formula", "glm", "lm",
             "model.matrix", "plogis", "pnorm", "qlogis", "sd")
to your NAMESPACE file.
Package vignette with placeholder title 'Vignette Title':
  'Sensitivity_analysis.Rmd'
Found the following significant warnings:
  Warning: namespace 'dplyr' is not available and has been replaced
See 'd:/Rcompile/CRANpkg/local/4.0/multisensi.Rcheck/00install.out' for details.
CCM_boot : <anonymous>: no visible global function definition for 'sd'
SSR_check_signal: no visible global function definition for 'cor'
SSR_check_signal: no visible global function definition for 'cor.test'
SSR_check_signal: no visible global function definition for 'lm'
SSR_pred_boot: no visible global function definition for 'cor'
make_ccm_data: no visible global function definition for 'rnorm'
make_ccm_data: no visible global function definition for 'runif'
make_ccm_data: no visible global function definition for 'rlnorm'
Undefined global functions or variables:
  cor cor.test lm rlnorm rnorm runif sd
Consider adding
  importFrom("stats", "cor", "cor.test", "lm", "rlnorm", "rnorm",
             "runif", "sd")
to your NAMESPACE file.
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    data   4.9Mb
PrbMlt.default: no visible binding for global variable 'na.omit'
PrbMlt.default: no visible global function definition for 'anova'
Undefined global functions or variables:
  anova na.omit
Consider adding
  importFrom("stats", "anova", "na.omit")
to your NAMESPACE file.
Depends: includes the non-default packages:
  'car', 'pdist', 'pls', 'gplots', 'mvtnorm', 'robustbase', 'gtools',
  'bitops', 'caTools', 'pcaPP', 'rrcov'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
'library' or 'require' calls to packages already attached by Depends:
  'car' 'gplots' 'pdist' 'pls' 'rrcov'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'bitops' 'caTools' 'car' 'gplots' 'gtools' 'mvtnorm' 'pcaPP' 'pdist'
  'pls' 'robustbase' 'rrcov'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
installed size is 20.0Mb
  sub-directories of 1Mb or more:
    libs  19.9Mb
plotFID: no visible global function definition for 'points'
Undefined global functions or variables:
  points
Consider adding
  importFrom("graphics", "points")
to your NAMESPACE file.
prentice.test: no visible global function definition for 'is'
Undefined global functions or variables:
  is
Consider adding
  importFrom("methods", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Error(s) in re-building vignettes:
--- re-building 'get_sarted_with_mutSignatures.Rmd' using rmarkdown
Quitting from lines 15-34 (get_sarted_with_mutSignatures.Rmd) 
Error: processing vignette 'get_sarted_with_mutSignatures.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'get_sarted_with_mutSignatures.Rmd'

SUMMARY: processing the following file failed:
  'get_sarted_with_mutSignatures.Rmd'

Error: Vignette re-building failed.
Execution halted
Malformed Description field: should contain one or more complete sentences.
mvb.simu: no visible global function definition for 'runif'
plot.lps: no visible global function definition for 'matplot'
unifit: no visible global function definition for 'model.frame'
unifit: no visible global function definition for 'model.matrix'
unifit: no visible global function definition for 'model.response'
unilps: no visible global function definition for 'model.frame'
unilps: no visible global function definition for 'model.matrix'
unilps: no visible global function definition for 'model.response'
Undefined global functions or variables:
  matplot model.frame model.matrix model.response runif
Consider adding
  importFrom("graphics", "matplot")
  importFrom("stats", "model.frame", "model.matrix", "model.response",
             "runif")
to your NAMESPACE file.
Checking should be performed on sources prepared by 'R CMD build'.
conceptIndicesSkm: no visible global function definition for
  'txtProgressBar'
conceptIndicesSkm: no visible global function definition for
  'setTxtProgressBar'
conceptVectorsSkm: no visible global function definition for
  'txtProgressBar'
conceptVectorsSkm: no visible global function definition for
  'setTxtProgressBar'
mvcmb: no visible global function definition for 'runif'
mvcmb: no visible global function definition for 'str'
mvcsph: no visible global function definition for 'pdf'
mvcsph: no visible global function definition for 'heatmap'
mvcsph: no visible global function definition for 'dev.off'
mvcsph: no visible global function definition for 'hclust'
mvcsph: no visible global function definition for 'dist'
mvcsph: no visible global function definition for 'str'
Undefined global functions or variables:
  dev.off dist hclust heatmap pdf runif setTxtProgressBar str
  txtProgressBar
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("stats", "dist", "hclust", "heatmap", "runif")
  importFrom("utils", "setTxtProgressBar", "str", "txtProgressBar")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mvMonitoring.Rcheck/00install.out' for details.
Found the following sources/headers not terminated with a newline:
  src/sitmo/sitmo.hpp
Some compilers warn on such files.
mvnpermute: no visible global function definition for 'lm'
mvnpermute: no visible global function definition for 'coef'
mvnpermute: no visible global function definition for 'resid'
Undefined global functions or variables:
  coef lm resid
Consider adding
  importFrom("stats", "coef", "lm", "resid")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MVN.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mvoutlier.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/mvp.Rcheck/00install.out' for details.
mvorpb: no visible global function definition for 'pnorm'
mvorpb: no visible global function definition for 'dnorm'
Undefined global functions or variables:
  dnorm pnorm
Consider adding
  importFrom("stats", "dnorm", "pnorm")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'getting_started_with_mvrsquared.Rmd' using rmarkdown
Quitting from lines 150-183 (getting_started_with_mvrsquared.Rmd) 
Error: processing vignette 'getting_started_with_mvrsquared.Rmd' failed with diagnostics:
package or namespace load failed for 'tidytext' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'getting_started_with_mvrsquared.Rmd'

SUMMARY: processing the following file failed:
  'getting_started_with_mvrsquared.Rmd'

Error: Vignette re-building failed.
Execution halted
rtn: no visible global function definition for 'runif'
rtn: no visible global function definition for 'qnorm'
rtn: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  pnorm qnorm runif
Consider adding
  importFrom("stats", "pnorm", "qnorm", "runif")
to your NAMESPACE file.
prepare_Rd: mvsf.Rd:16-17: Dropping empty section \details
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'RColorBrewer' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'RColorBrewer'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
mxkssd: no visible global function definition for 'txtProgressBar'
mxkssd: no visible global function definition for 'setTxtProgressBar'
Undefined global functions or variables:
  setTxtProgressBar txtProgressBar
Consider adding
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'mmod_tutorial.Rmd' using rmarkdown
Quitting from lines 42-45 (mmod_tutorial.Rmd) 
Error: processing vignette 'mmod_tutorial.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'mmod_tutorial.Rmd'

SUMMARY: processing the following file failed:
  'mmod_tutorial.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/MXM.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
abcpred_nmer: no visible global function definition for 'write.table'
algpred: no visible global function definition for 'read.table'
algpred: no visible global function definition for 'write.table'
allermatch: no visible global function definition for 'read.table'
allermatch: no visible global function definition for 'write.table'
bcepred_nmer: no visible global function definition for 'write.table'
bimas_nmer: no visible global function definition for 'write.table'
filter.firstlayer: no visible global function definition for
  'read.table'
filter.firstlayer: no visible global function definition for
  'write.table'
iedb_arb_mhci_nmer: no visible global function definition for
  'write.table'
iedb_arb_mhcii_nmer: no visible global function definition for
  'write.table'
iedb_consensus_mhci_nmer: no visible global function definition for
  'write.table'
iedb_consensus_mhcii_nmer: no visible global function definition for
  'write.table'
netmhcNN_nmer: no visible global function definition for 'write.table'
netmhcWT_nmer: no visible global function definition for 'write.table'
propred_nmer: no visible global function definition for 'write.table'
Undefined global functions or variables:
  read.table write.table
Consider adding
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
update_episode: no visible global function definition for 'browseURL'
Undefined global functions or variables:
  browseURL
Consider adding
  importFrom("utils", "browseURL")
to your NAMESPACE file.
installed size is 13.9Mb
  sub-directories of 1Mb or more:
    java  13.8Mb
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   2.0Mb
    doc    2.5Mb
    libs   2.0Mb
Running examples in 'myTAI-Ex.R' failed
The error most likely occurred in:

> ### Name: CollapseReplicates
> ### Title: Combine Replicates in an ExpressionSet
> ### Aliases: CollapseReplicates
> 
> ### ** Examples
> 
> data(PhyloExpressionSetExample)
> 
> # combine the expression levels of the 2 replicates (const) per stage
> # using mean as window function and rename new stages: "S1","S2","S3"
> CollapseReplicates(ExpressionSet = PhyloExpressionSetExample[1:5,1:8], 
+                    nrep          = 2, 
+                    FUN           = mean, 
+                    stage.names   = c("S1","S2","S3"))
Warning: `is.tibble()` is deprecated as of tibble 2.0.0.
Please use `is_tibble()` instead.
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated.
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: CollapseReplicates ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Advanced.Rmd' using rmarkdown
--- finished re-building 'Advanced.Rmd'

--- re-building 'Enrichment.Rmd' using rmarkdown
--- finished re-building 'Enrichment.Rmd'

--- re-building 'Expression.Rmd' using rmarkdown
--- finished re-building 'Expression.Rmd'

--- re-building 'Intermediate.Rmd' using rmarkdown
Quitting from lines 87-91 (Intermediate.Rmd) 
Error: processing vignette 'Intermediate.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Intermediate.Rmd'

--- re-building 'Introduction.Rmd' using rmarkdown
Quitting from lines 418-426 (Introduction.Rmd) 
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Introduction.Rmd'

--- re-building 'Taxonomy.Rmd' using rmarkdown
--- finished re-building 'Taxonomy.Rmd'

SUMMARY: processing the following files failed:
  'Intermediate.Rmd' 'Introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
abs_dif: no visible global function definition for 'as.formula'
env_dif: no visible global function definition for 'lm'
env_dif: no visible global function definition for 'as.formula'
env_dif_logistic: no visible global function definition for
  'as.formula'
fam_env: no visible global function definition for 'as.formula'
log_dif: no visible global function definition for 'as.formula'
Undefined global functions or variables:
  as.formula lm
Consider adding
  importFrom("stats", "as.formula", "lm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/N2H4.Rcheck/00install.out' for details.
Running examples in 'NACHO-Ex.R' failed
The error most likely occurred in:

> ### Name: autoplot.nacho
> ### Title: Plot quality-control metrics and thresholds of a "nacho" object
> ### Aliases: autoplot.nacho
> 
> ### ** Examples
> 
> 
> data(GSE74821)
> 
> autoplot(GSE74821, x = "BD")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: autoplot ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(NACHO)
  
  > 
  > rcc_files_directory <- "testthat/plexset_data"
  > targets <- data.frame(stringsAsFactors = FALSE,
  +   name = list.files(rcc_files_directory),
  +   datapath = list.files(rcc_files_directory, full.names = TRUE)
  + )
  > targets$IDFILE <- basename(targets$datapath)
  > targets$plexset_id <- rep(list(paste0("S", 1:8)), each = nrow(targets))
  > plexset_tidy <- as.data.frame(tidyr::unnest(targets, "plexset_id"))
  Error in library.dynam(lib, package, package.lib) : 
    DLL 'dplyr' not found: maybe not installed for this architecture?
  Calls: as.data.frame ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
  Execution halted
Package which this enhances but not available for checking: 'asreml'
installed size is 16.3Mb
  sub-directories of 1Mb or more:
    extdata  16.2Mb
Error(s) in re-building vignettes:
--- re-building 'v1-old-syntax.Rmd' using knitr
--- finished re-building 'v1-old-syntax.Rmd'

--- re-building 'v2-recommended-syntax.Rmd' using knitr
--- finished re-building 'v2-recommended-syntax.Rmd'

--- re-building 'v3-verbose.Rmd' using knitr
Quitting from lines 40-107 (v3-verbose.Rmd) 
Error: processing vignette 'v3-verbose.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'v3-verbose.Rmd'

--- re-building 'v4-data-frames.Rmd' using knitr
Quitting from lines 40-146 (v4-data-frames.Rmd) 
Error: processing vignette 'v4-data-frames.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'v4-data-frames.Rmd'

SUMMARY: processing the following files failed:
  'v3-verbose.Rmd' 'v4-data-frames.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'namer-Ex.R' failed
The error most likely occurred in:

> ### Name: name_chunks
> ### Title: Name chunks in a single file
> ### Aliases: name_chunks
> 
> ### ** Examples
> 
> temp_file_path <- file.path(tempdir(), "test.Rmd")
> file.copy(system.file("examples", "example1.Rmd", package = "namer"),
+           temp_file_path,
+           overwrite = TRUE)
[1] TRUE
> name_chunks(temp_file_path)
Error: `map_df()` requires dplyr
Backtrace:
    x
 1. \-namer::name_chunks(temp_file_path)
 2.   \-namer:::get_chunk_info(lines)
 3.     \-purrr::map_df(chunk_header_indices, digest_chunk_header, lines)
Execution halted
Malformed Description field: should contain one or more complete sentences.
installed size is  7.9Mb
  sub-directories of 1Mb or more:
    data     1.9Mb
    libs     4.8Mb
    models   1.1Mb
Running examples in 'naniar-Ex.R' failed
The error most likely occurred in:

> ### Name: add_any_miss
> ### Title: Add a column describing presence of any missing values
> ### Aliases: add_any_miss
> 
> ### ** Examples
> 
> 
> airquality %>% add_any_miss()
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: %>% ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'exploring-imputed-values.Rmd' using rmarkdown
Quitting from lines 30-37 (exploring-imputed-values.Rmd) 
Error: processing vignette 'exploring-imputed-values.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'exploring-imputed-values.Rmd'

--- re-building 'getting-started-w-naniar.Rmd' using rmarkdown
Quitting from lines 64-67 (getting-started-w-naniar.Rmd) 
Error: processing vignette 'getting-started-w-naniar.Rmd' failed with diagnostics:
`map_df()` requires dplyr
--- failed re-building 'getting-started-w-naniar.Rmd'

--- re-building 'naniar-visualisation.Rmd' using rmarkdown
Quitting from lines 29-32 (naniar-visualisation.Rmd) 
Error: processing vignette 'naniar-visualisation.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'naniar-visualisation.Rmd'

--- re-building 'replace-with-na.Rmd' using rmarkdown
Quitting from lines 120-123 (replace-with-na.Rmd) 
Error: processing vignette 'replace-with-na.Rmd' failed with diagnostics:
`map_dfc()` requires dplyr
--- failed re-building 'replace-with-na.Rmd'

--- re-building 'special-missing-values.Rmd' using rmarkdown
Quitting from lines 33-35 (special-missing-values.Rmd) 
Error: processing vignette 'special-missing-values.Rmd' failed with diagnostics:
`map_dfc()` requires dplyr
--- failed re-building 'special-missing-values.Rmd'

SUMMARY: processing the following files failed:
  'exploring-imputed-values.Rmd' 'getting-started-w-naniar.Rmd'
  'naniar-visualisation.Rmd' 'replace-with-na.Rmd'
  'special-missing-values.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nanny.Rcheck/00install.out' for details.
Found the following significant warnings:
  Warning: namespace 'Rcpp' is not available and has been replaced
See 'd:/Rcompile/CRANpkg/local/4.0/NanoStringNorm.Rcheck/00install.out' for details.
Running examples in 'nanostringr-Ex.R' failed
The error most likely occurred in:

> ### Name: HKnorm
> ### Title: Normalization to Housekeeping Genes
> ### Aliases: HKnorm
> 
> ### ** Examples
> 
> HKnorm(ovd.r)
Error: `map2_dfr()` requires dplyr
Backtrace:
    x
 1. \-nanostringr::HKnorm(ovd.r)
 2.   \-purrr::map2_df(gxdat, hkmeans, `-`)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Overview.Rmd' using rmarkdown
Quitting from lines 70-88 (Overview.Rmd) 
Error: processing vignette 'Overview.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Overview.Rmd'

SUMMARY: processing the following file failed:
  'Overview.Rmd'

Error: Vignette re-building failed.
Execution halted
NAPPA: no visible binding for global variable 'sd'
NAPPA: no visible global function definition for 'sd'
calibrate.sigmoid.curve : <anonymous> : <anonymous>: no visible global
  function definition for 'coef'
calibrate.sigmoid.curve : <anonymous> : <anonymous>: no visible global
  function definition for 'lm'
calibrate.sigmoid.curve: no visible global function definition for
  'nls'
calibrate.sigmoid.curve: no visible binding for global variable
  'weights'
calibrate.sigmoid.curve: no visible global function definition for
  'coef'
calibrate.sigmoid.curve: no visible global function definition for
  'rgb'
calibrate.sigmoid.curve: no visible global function definition for
  'box'
calibrate.sigmoid.curve: no visible global function definition for
  'axis'
calibrate.sigmoid.curve: no visible global function definition for
  'abline'
calibrate.sigmoid.curve: no visible global function definition for
  'lines'
calibrate.sigmoid.curve: no visible global function definition for
  'predict'
calibrate.sigmoid.curve: no visible global function definition for
  'smooth.spline'
calibrate.sigmoid.curve : <anonymous>: no visible global function
  definition for 'nls'
calibrate.sigmoid.curve : <anonymous>: no visible binding for global
  variable 'weights'
calibrate.sigmoid.curve: no visible binding for global variable 'coef'
calibrate.sigmoid.curve: no visible global function definition for 'pf'
calibrate.sigmoid.curve: no visible global function definition for
  'legend'
Undefined global functions or variables:
  abline axis box coef legend lines lm nls pf predict rgb sd
  smooth.spline weights
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "abline", "axis", "box", "legend", "lines")
  importFrom("stats", "coef", "lm", "nls", "pf", "predict", "sd",
             "smooth.spline", "weights")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nasadata.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nationwider.Rcheck/00install.out' for details.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data   3.9Mb
    doc    1.9Mb
NB.estimator: no visible global function definition for 'optimize'
NB.estimator: no visible global function definition for 'uniroot'
NB.example.dataset: no visible global function definition for
  'write.table'
Undefined global functions or variables:
  optimize uniroot write.table
Consider adding
  importFrom("stats", "optimize", "uniroot")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Running examples in 'nbTransmission-Ex.R' failed
The error most likely occurred in:

> ### Name: clusterInfectors
> ### Title: Clusters the infectors based on their transmission probabilities
> ### Aliases: clusterInfectors
> 
> ### ** Examples
> 
> 
> ## Use the nbResults data frame included in the package which has the results
> ## of the nbProbabilities() function on a TB-like outbreak.
> 
> ## Clustering using top n
> # High probability cluster includes infectors with highest 3 probabilities
> clust1 <- clusterInfectors(nbResults, indIDVar = "individualID", pVar = "pScaled",
+                            clustMethod = "n", cutoff = 3)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: clusterInfectors ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'nbTransmission-vignette.Rmd' using rmarkdown
Quitting from lines 135-142 (nbTransmission-vignette.Rmd) 
Error: processing vignette 'nbTransmission-vignette.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'nbTransmission-vignette.Rmd'

SUMMARY: processing the following file failed:
  'nbTransmission-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ncappc.Rcheck/00install.out' for details.
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    data   9.4Mb
Malformed Description field: should contain one or more complete sentences.
ncbit : FUN: no visible global function definition for 'read.table'
ncbit : FUN: no visible global function definition for 'head'
Undefined global functions or variables:
  head read.table
Consider adding
  importFrom("utils", "head", "read.table")
to your NAMESPACE file.
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    libs   8.4Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ncdfgeom.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ncdump.Rcheck/00install.out' for details.
d0: no visible global function definition for 'qnorm'
dncgamma: no visible global function definition for 'dpois'
indncgamma: no visible global function definition for 'pgamma'
indncgamma: no visible global function definition for 'dpois'
inxncgamma: no visible global function definition for 'qnorm'
inxncgamma: no visible global function definition for 'pgamma'
inxncgamma: no visible global function definition for 'dpois'
pncgamma: no visible global function definition for 'pgamma'
pncgamma: no visible global function definition for 'dpois'
Undefined global functions or variables:
  dpois pgamma qnorm
Consider adding
  importFrom("stats", "dpois", "pgamma", "qnorm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/neatmaps.Rcheck/00install.out' for details.
BugReports field is not a suitable URL but contains an email address:
   use the Contact field instead
population: no visible global function definition for 'weighted.mean'
population: no visible global function definition for 'rpois'
population: no visible global function definition for 'lm'
population: no visible global function definition for 'coefficients'
population: no visible global function definition for 'sd'
population: no visible global function definition for 'par'
population: no visible global function definition for 'lines'
Undefined global functions or variables:
  coefficients lines lm par rpois sd weighted.mean
Consider adding
  importFrom("graphics", "lines", "par")
  importFrom("stats", "coefficients", "lm", "rpois", "sd",
             "weighted.mean")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/neo4r.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/neonUtilities.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/neotoma.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nesRdata.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/NestedCategBayesImpute.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
The following files look like leftovers/mistakes:
  'Rplots.pdf', 'Rplots.ps'
Please remove them from your package.
netVal: no visible global function definition for 'cutree'
netVal: no visible global function definition for 'hclust'
netVal: no visible global function definition for 'as.dist'
Undefined global functions or variables:
  as.dist cutree hclust
Consider adding
  importFrom("stats", "as.dist", "cutree", "hclust")
to your NAMESPACE file.
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc    2.2Mb
    libs   2.9Mb
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   5.4Mb
Error(s) in re-building vignettes:
--- re-building 'netgsa.Rmd' using rmarkdown
Quitting from lines 76-82 (netgsa.Rmd) 
Error: processing vignette 'netgsa.Rmd' failed with diagnostics:
package or namespace load failed for 'msigdbr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'netgsa.Rmd'

SUMMARY: processing the following file failed:
  'netgsa.Rmd'

Error: Vignette re-building failed.
Execution halted
EnvInd: no visible global function definition for 'sd'
Undefined global functions or variables:
  sd
Consider adding
  importFrom("stats", "sd")
to your NAMESPACE file.
Package suggested but not available for checking: 'fastshp'
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    doc    1.8Mb
    libs   2.6Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/NetworkChange.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/NetworkComparisonTest.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/NetworkExtinction.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'quickstart_vignette.Rmd' using rmarkdown
NetworkInference: Inferring latent diffusion networks.
Version 1.2.4
copyright (c) 2016, Fridolin Linder, Pennsylvania State University
                    Bruce Desmarais, Pennsylvania State University
For citation information, type citation("NetworkInference").
Type help("NetworkInference") to get started.

--- finished re-building 'quickstart_vignette.Rmd'

--- re-building 'tutorial_vignette.Rmd' using rmarkdown
NetworkInference: Inferring latent diffusion networks.
Version 1.2.4
copyright (c) 2016, Fridolin Linder, Pennsylvania State University
                    Bruce Desmarais, Pennsylvania State University
For citation information, type citation("NetworkInference").
Type help("NetworkInference") to get started.

Quitting from lines 86-89 (tutorial_vignette.Rmd) 
Error: processing vignette 'tutorial_vignette.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'tutorial_vignette.Rmd'

SUMMARY: processing the following file failed:
  'tutorial_vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/networkreporting.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/NetworkRiskMeasures.Rcheck/00install.out' for details.
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   5.7Mb
Running examples in 'NetworkSim-Ex.R' failed
The error most likely occurred in:

> ### Name: netGDD
> ### Title: Calculate the Graphlet degree distribution (GDD) agreement
> ###   between two networks
> ### Aliases: netGDD
> 
> ### ** Examples
> 
> 
>  nodes <-names(igraph::V(databases.net))
> 
>  net1 <-subnet(databases.net,sample(nodes,100))
> 
>  net2 <-subnet(databases.net,sample(nodes,100))
> 
>  netGDD(net1,net2)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: netGDD ... loadNamespace -> namespaceImport -> loadNamespace -> library.dynam
Execution halted
simulate.sisnetwork: no visible global function definition for 'var'
Undefined global functions or variables:
  var
Consider adding
  importFrom("stats", "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/networktools.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/NeuralNetTools.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
mlptrain : rect: no visible global function definition for 'polygon'
mlptrain : drawnet: no visible global function definition for 'title'
mlptrain : drawnet: no visible global function definition for 'polygon'
mlptrain : drawnet: no visible global function definition for 'text'
mlptrain : drawnet: no visible global function definition for 'lines'
mlptrain: no visible global function definition for 'runif'
mlptrain: no visible global function definition for 'locator'
mlptrain: no visible global function definition for 'polygon'
mlptrain: no visible global function definition for 'text'
rbftrain : rect: no visible global function definition for 'polygon'
rbftrain : drawnet: no visible global function definition for 'title'
rbftrain : drawnet: no visible global function definition for 'polygon'
rbftrain : drawnet: no visible global function definition for 'text'
rbftrain : drawnet: no visible global function definition for 'lines'
rbftrain : graph: no visible global function definition for 'title'
rbftrain : graph: no visible global function definition for 'polygon'
rbftrain : graph: no visible global function definition for 'text'
rbftrain : graph: no visible global function definition for 'lines'
rbftrain : graph: no visible global function definition for 'points'
rbftrain: no visible global function definition for 'runif'
rbftrain: no visible global function definition for 'locator'
rbftrain: no visible global function definition for 'polygon'
rbftrain: no visible global function definition for 'text'
rbftrain: no visible global function definition for 'kmeans'
Undefined global functions or variables:
  kmeans lines locator points polygon runif text title
Consider adding
  importFrom("graphics", "lines", "locator", "points", "polygon", "text",
             "title")
  importFrom("stats", "kmeans", "runif")
to your NAMESPACE file.
Running examples in 'NeuralSens-Ex.R' failed
The error most likely occurred in:

> ### Name: ComputeHessMeasures
> ### Title: Plot sensitivities of a neural network model
> ### Aliases: ComputeHessMeasures
> 
> ### ** Examples
> 
> ## Load data -------------------------------------------------------------------
> data("DAILY_DEMAND_TR")
> fdata <- DAILY_DEMAND_TR
> 
> ## Parameters of the NNET ------------------------------------------------------
> hidden_neurons <- 5
> iters <- 250
> decay <- 0.1
> 
> ################################################################################
> #########################  REGRESSION NNET #####################################
> ################################################################################
> ## Regression dataframe --------------------------------------------------------
> # Scale the data
> fdata.Reg.tr <- fdata[,2:ncol(fdata)]
> fdata.Reg.tr[,3] <- fdata.Reg.tr[,3]/10
> fdata.Reg.tr[,1] <- fdata.Reg.tr[,1]/1000
> 
> # Normalize the data for some models
> preProc <- caret::preProcess(fdata.Reg.tr, method = c("center","scale"))
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: :: ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'neurobase.Rmd' using rmarkdown
--- finished re-building 'neurobase.Rmd'

--- re-building 'nifti_basics.Rmd' using rmarkdown
Quitting from lines 513-517 (nifti_basics.Rmd) 
Error: processing vignette 'nifti_basics.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'nifti_basics.Rmd'

--- re-building 'simple_io.Rmd' using rmarkdown
trying URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz'
Content type 'application/gzip' length 21807043 bytes (20.8 MB)
==================================================
downloaded 20.8 MB

--- finished re-building 'simple_io.Rmd'

SUMMARY: processing the following file failed:
  'nifti_basics.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  7.7Mb
  sub-directories of 1Mb or more:
    data   7.6Mb
Error(s) in re-building vignettes:
--- re-building 'hcp.Rmd' using rmarkdown
Quitting from lines 15-18 (hcp.Rmd) 
Error: processing vignette 'hcp.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'hcp.Rmd'

SUMMARY: processing the following file failed:
  'hcp.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/neuromplex.Rcheck/00install.out' for details.
balloon: no visible global function definition for 'convolve'
physnoise: no visible global function definition for 'sd'
physnoise: no visible global function definition for 'rnorm'
rrice: no visible global function definition for 'rnorm'
simTSrestingstate: no visible global function definition for 'runif'
simTSrestingstate: no visible global function definition for 'fft'
spatialnoise: no visible global function definition for 'rnorm'
spatialnoise: no visible global function definition for 'qgamma'
spatialnoise: no visible global function definition for 'pnorm'
specifydesign: no visible global function definition for 'convolve'
systemnoise: no visible global function definition for 'rnorm'
tasknoise: no visible global function definition for 'rnorm'
tasknoise: no visible global function definition for 'sd'
temporalnoise: no visible global function definition for 'arima.sim'
Undefined global functions or variables:
  arima.sim convolve fft pnorm qgamma rnorm runif sd
Consider adding
  importFrom("stats", "arima.sim", "convolve", "fft", "pnorm", "qgamma",
             "rnorm", "runif", "sd")
to your NAMESPACE file.
Running examples in 'neutralitytestr-Ex.R' failed
The error most likely occurred in:

> ### Name: lsq_plot
> ### Title: Plot cumulative distribution 'lsq_plot' Plots the cumulative
> ###   distribution of the data as well as the best fit linear model line.
> ### Aliases: lsq_plot
> 
> ### ** Examples
> 
> lsq_plot(neutralitytest(VAFselection, fmin = 0.1, fmax = 0.25))
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: lsq_plot ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'neutraltytestr.Rmd' using rmarkdown
Quitting from lines 36-37 (neutraltytestr.Rmd) 
Error: processing vignette 'neutraltytestr.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'neutraltytestr.Rmd'

SUMMARY: processing the following file failed:
  'neutraltytestr.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/newsanchor.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/newscatcheR.Rcheck/00install.out' for details.
nfca : nFCAmain: no visible global function definition for 'hist'
nfca : nFCAmain: no visible global function definition for
  'flush.console'
nfca : nFCAmain: no visible global function definition for 'qnorm'
nfca : nFCAmain: no visible global function definition for 'read.csv'
nfca : nFCAmain: no visible global function definition for 'cor'
nfca : nFCAmain: no visible global function definition for 'as.dist'
nfca : nFCAmain: no visible global function definition for 'cophenetic'
nfca : nFCAmain: no visible global function definition for 'hclust'
nfca : thresholdTEST: no visible global function definition for
  'read.csv'
nfca : gScript: no visible global function definition for 'read.csv'
nfca : gScript0: no visible global function definition for 'read.csv'
nfca : gMatrix: no visible global function definition for 'read.csv'
nfca: no visible global function definition for 'cor'
Undefined global functions or variables:
  as.dist cophenetic cor flush.console hclust hist qnorm read.csv
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "as.dist", "cophenetic", "cor", "hclust", "qnorm")
  importFrom("utils", "flush.console", "read.csv")
to your NAMESPACE file.
Package suggested but not available for checking: 'NFPdata'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/NFP.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nhdplusTools.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nhdR.Rcheck/00install.out' for details.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
Running examples in 'NHSRdatasets-Ex.R' failed
The error most likely occurred in:

> ### Name: ae_attendances
> ### Title: NHS England Accident & Emergency Attendances and Admissions
> ### Aliases: ae_attendances
> ### Keywords: a&e datasets hospital
> 
> ### ** Examples
> 
> data(ae_attendances)
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Error(s) in re-building vignettes:
--- re-building 'LOS_model.Rmd' using rmarkdown
Quitting from lines 32-44 (LOS_model.Rmd) 
Error: processing vignette 'LOS_model.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'LOS_model.Rmd'

--- re-building 'ae_attendances.Rmd' using rmarkdown
Quitting from lines 47-69 (ae_attendances.Rmd) 
Error: processing vignette 'ae_attendances.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'ae_attendances.Rmd'

--- re-building 'ons_mortality.Rmd' using rmarkdown
--- finished re-building 'ons_mortality.Rmd'

SUMMARY: processing the following files failed:
  'LOS_model.Rmd' 'ae_attendances.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'nichevol-Ex.R' failed
The error most likely occurred in:

> ### Name: random_polygons
> ### Title: Generation of random polygons in a given area
> ### Aliases: random_polygons
> 
> ### ** Examples
> 
> # crreating a simple polygon
> rdata <- cbind(x = rnorm(100, -80, 12), y = rnorm(100, -3, 15))
> WGS84 <- sp::CRS("+proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0")
Warning in showSRID(uprojargs, format = "PROJ", multiline = "NO") :
  Discarded datum WGS_1984 in CRS definition,
 but +towgs84= values preserved
> sp_data <- sp::SpatialPoints(rdata, proj4string = WGS84)
> pol <- suppressWarnings(rgeos::gBuffer(sp_data, width = 10))
> pol <- sp::SpatialPolygonsDataFrame(pol, data = data.frame(ID = 1),
+                                     match.ID = FALSE)
> 
> # creating 5 random polygons in the whole area using the "BR" style
> r_pols <- random_polygons(pol, style = "BR", n_polygons = 5)

Preparing data...

Creating polygons:
	1 of 5 polygons
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: random_polygons ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nima.Rcheck/00install.out' for details.
installed size is 19.9Mb
  sub-directories of 1Mb or more:
    CppCode   2.7Mb
    R         6.1Mb
    include   5.6Mb
    libs      2.4Mb
    tests     1.7Mb
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nitrcbot.Rcheck/00install.out' for details.
nlmeODE: no visible global function definition for 'deriv'
Undefined global functions or variables:
  deriv
Consider adding
  importFrom("stats", "deriv")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Pwr.lme: no visible global function definition for 'anova'
Pwr.lme: no visible global function definition for 'qf'
Pwr.lme: no visible global function definition for 'pf'
logLik1.lme: no visible global function definition for 'coef'
logLik1.lme: no visible global function definition for 'model.matrix'
logLik1.lme: no visible global function definition for 'predict'
logLik1.lme: no visible global function definition for 'formula'
runScript: no visible binding for global variable 'example'
sigmaTolme: no visible global function definition for 'vcov'
simulateY.lme: no visible global function definition for 'runif'
simulateY.lme: no visible global function definition for 'fitted'
simulateY.lme: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  anova coef example fitted formula model.matrix pf predict qf rnorm
  runif vcov
Consider adding
  importFrom("stats", "anova", "coef", "fitted", "formula",
             "model.matrix", "pf", "predict", "qf", "rnorm", "runif",
             "vcov")
  importFrom("utils", "example")
to your NAMESPACE file.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   4.2Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nlmm.Rcheck/00install.out' for details.
Running examples in 'NLMR-Ex.R' failed
The error most likely occurred in:

> ### Name: nlm_curds
> ### Title: nlm_curds
> ### Aliases: nlm_curds
> 
> ### ** Examples
> 
> 
> # simulate random curdling
> (random_curdling <- nlm_curds(curds = c(0.5, 0.3, 0.6),
+                               recursion_steps = c(32, 6, 2)))
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: nlm_curds ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [34s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(NLMR)
  > 
  > test_check("NLMR")
  -- 1. Error: nlm_curds is a good boy (@test_curds.R#5)  ------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. NLMR::nlm_curds(c(0.5, 0.3), c(6, 2))
   2. dplyr::filter
   3. base::getExportedValue(pkg, name)
   4. base::asNamespace(ns)
   5. base::getNamespace(ns)
   6. base::loadNamespace(name)
   7. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: nlm_curds with wheyed option is functional (@test_curds.R#12)  ----
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. NLMR::nlm_curds(c(0.5, 0.3), c(6, 2), c(0.2, 0.3))
   2. dplyr::filter
   3. base::getExportedValue(pkg, name)
   4. base::asNamespace(ns)
   5. base::getNamespace(ns)
   6. base::loadNamespace(name)
   7. base::library.dynam(lib, package, package.lib)
  
  -- 3. Error: (unknown) (@test_randomcluster.R#4)  ------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::suppressWarnings(...)
   3. NLMR::nlm_randomcluster(...)
   4. dplyr::rowwise
   5. base::getExportedValue(pkg, name)
   6. base::asNamespace(ns)
   7. base::getNamespace(ns)
   8. base::loadNamespace(name)
   9. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 59 | SKIPPED: 0 | WARNINGS: 3 | FAILED: 3 ]
  1. Error: nlm_curds is a good boy (@test_curds.R#5) 
  2. Error: nlm_curds with wheyed option is functional (@test_curds.R#12) 
  3. Error: (unknown) (@test_randomcluster.R#4) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nloptr.Rcheck/00install.out' for details.
Missing or unexported object: 'cleanNLP::cnlp_get_token'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/NLPutils.Rcheck/00install.out' for details.
Running examples in 'nlrx-Ex.R' failed
The error most likely occurred in:

> ### Name: analyze_nl
> ### Title: Analyze NetLogo simulation output
> ### Aliases: analyze_nl
> 
> ### ** Examples
> 
> 
> # Load nl object including output data from testdata
> nl <- nl_sobol
> 
> # Define aggregation measurements:
> myfuns <- list(mean=mean, sd=sd, min=min, max=max)
> 
> # Calculate sensitivity indices:
> analyze_nl(nl, funs = myfuns)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: analyze_nl ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Package in Depends field not imported from: 'proto'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported objects imported by ':::' calls:
  'stats:::nlsModel' 'stats:::nlsModel.plinear'
  See the note in ?`:::` about the use of this operator.
nls2: no visible global function definition for 'nls.control'
nls2: no visible global function definition for 'as.formula'
nls2: no visible global function definition for 'coef'
nls2: no visible global function definition for 'runif'
nls2 : <anonymous>: no visible global function definition for
  'deviance'
Undefined global functions or variables:
  as.formula coef deviance nls.control runif
Consider adding
  importFrom("stats", "as.formula", "coef", "deviance", "nls.control",
             "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nlshelper.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Running examples in 'nls.multstart-Ex.R' failed
The error most likely occurred in:

> ### Name: nls_multstart
> ### Title: Finds the best fit of non-linear model based on AIC score
> ### Aliases: nls_multstart
> 
> ### ** Examples
> 
> # load in data
> 
> data("Chlorella_TRC")
> Chlorella_TRC_test <- Chlorella_TRC[Chlorella_TRC$curve_id == 1,]
> 
> # run nls_multstart()
> 
> # define the Sharpe-Schoolfield equation
> schoolfield_high <- function(lnc, E, Eh, Th, temp, Tc) {
+  Tc <- 273.15 + Tc
+  k <- 8.62e-5
+  boltzmann.term <- lnc + log(exp(E/k*(1/Tc - 1/temp)))
+  inactivation.term <- log(1/(1 + exp(Eh/k*(1/Th - 1/temp))))
+  return(boltzmann.term + inactivation.term)
+ }
> 
> fits <- nls_multstart(ln.rate ~ schoolfield_high(lnc, E, Eh, Th, temp = K, Tc = 20),
+                 data = Chlorella_TRC_test,
+                 iter = 500,
+                 start_lower = c(lnc=-10, E=0.1, Eh=0.5, Th=285),
+                 start_upper = c(lnc=10, E=2, Eh=5, Th=330),
+                 lower = c(lnc=-10, E=0, Eh=0, Th=0),
+                 supp_errors = 'Y')
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: nls_multstart ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
installed size is  8.6Mb
  sub-directories of 1Mb or more:
    data      4.3Mb
    reports   2.2Mb
Malformed Description field: should contain one or more complete sentences.
nnmf_als: no visible global function definition for 'rnorm'
nnmf_mm: no visible global function definition for 'rnorm'
nnmf_prob: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  rnorm
Consider adding
  importFrom("stats", "rnorm")
to your NAMESPACE file.
Running examples in 'Nmisc-Ex.R' failed
The error most likely occurred in:

> ### Name: pull_with_names
> ### Title: Pull out a single column
> ### Aliases: pull_with_names
> 
> ### ** Examples
> 
> head(pull_with_names(iris, 4, "Species"))
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: head ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(Nmisc)
  > 
  > test_check("Nmisc")
  -- 1. Error: pull_with_names works (@test_dplyr-misc.R#4)  ---------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. Nmisc::pull_with_names(iris, "Petal.Width", "Species")
   2. dplyr::pull
   3. base::getExportedValue(pkg, name)
   4. base::asNamespace(ns)
   5. base::getNamespace(ns)
   6. base::loadNamespace(name)
   7. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 110 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: pull_with_names works (@test_dplyr-misc.R#4) 
  
  Error: testthat unit tests failed
  Execution halted
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    libs   2.2Mb
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(nnGarrote)
  > 
  > test_check("nnGarrote")
  -- 1. Error: The cross-validation function "cv.nnGarrote" is returning an output
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_output(...)
   10. nnGarrote::cv.nnGarrote(...)
   11. caret::createFolds
   12. base::getExportedValue(pkg, name)
   13. base::asNamespace(ns)
   14. base::getNamespace(ns)
   15. base::loadNamespace(name)
   17. base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
   20. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   21. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: The cross-validation function "cv.nnGarrote" is returning an output. (@test_nnGarrote_LS.R#41) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nntrf.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'getting_started.Rmd' using rmarkdown
Loading required package: testthat
Loading required package: curl
Tracing function "form_file" as seen from package "httr"
Quitting from lines 25-37 (getting_started.Rmd) 
Error: processing vignette 'getting_started.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'getting_started.Rmd'

SUMMARY: processing the following file failed:
  'getting_started.Rmd'

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: 'hurricaneexposuredata'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/noaastormevents.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/NobBS.Rcheck/00install.out' for details.
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(noctua)
  > 
  > test_check("noctua")
  -- 1. Error: (unknown) (@test-dplyr-compute.R#8)  ------------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  -- 2. Error: (unknown) (@test-dplyr-copy_to.R#8)  ------------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  -- 3. Error: (unknown) (@test-dplyr-sql-trans-env.R#8)  ------------------------
  package or namespace load failed for 'dbplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dbplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 8 | SKIPPED: 15 | WARNINGS: 0 | FAILED: 3 ]
  1. Error: (unknown) (@test-dplyr-compute.R#8) 
  2. Error: (unknown) (@test-dplyr-copy_to.R#8) 
  3. Error: (unknown) (@test-dplyr-sql-trans-env.R#8) 
  
  Error: testthat unit tests failed
  Execution halted
makeRules: no visible global function definition for 'sd'
makeRules: no visible global function definition for 'rnorm'
nodeHarvest: no visible global function definition for 'capture.output'
nodeHarvest: no visible global function definition for 'lm'
nodeHarvest: no visible global function definition for 'coef'
plot.nodeHarvest: no visible global function definition for 'rgb'
Undefined global functions or variables:
  capture.output coef lm rgb rnorm sd
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("stats", "coef", "lm", "rnorm", "sd")
  importFrom("utils", "capture.output")
to your NAMESPACE file.
Running examples in 'NoiseFiltersR-Ex.R' failed
The error most likely occurred in:

> ### Name: EF
> ### Title: Ensemble Filter
> ### Aliases: EF EF.default EF.formula
> 
> ### ** Examples
> 
> data(iris)
> # We fix a seed since there exists a random partition for the ensemble
> set.seed(1)
> out <- EF(Species~., data = iris, consensus = FALSE)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: EF ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nomisr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nonet.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nonmemica.Rcheck/00install.out' for details.
Depends: includes the non-default packages:
  'lpSolve', 'gdata', 'Hmisc', 'rms', 'geometry', 'psych', 'pwt'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
'library' or 'require' calls to packages already attached by Depends:
  'Hmisc' 'gdata' 'geometry' 'lpSolve' 'psych' 'rms'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'Hmisc' 'gdata' 'geometry' 'lpSolve' 'psych' 'pwt' 'rms'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
additive: no visible global function definition for 'lp'
ar.dual.dea: no visible global function definition for 'lp'
cost.dea: no visible global function definition for 'lp'
ddf: no visible global function definition for 'lp'
dea: no visible global function definition for 'lp'
direc.dea: no visible global function definition for 'lp'
dual.dea: no visible global function definition for 'lp'
effdea.b.f: no visible global function definition for 'convhulln'
effdea.b.f: no visible global function definition for 'lp'
faremalm2: no visible binding for global variable 'Lag'
faremalm2: no visible global function definition for 'na.omit'
int.dea: no visible global function definition for 'lp'
lp2: no visible global function definition for 'lp'
revenue.dea: no visible global function definition for 'lp'
sbm.tone: no visible global function definition for 'lp'
sbm.vrs: no visible global function definition for 'lp'
Undefined global functions or variables:
  Lag convhulln lp na.omit
Consider adding
  importFrom("stats", "na.omit")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/NonProbEst.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nopp.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'histogram' 'optimx'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
dnormgam: no visible global function definition for 'qgamma'
dnormgam: no visible global function definition for 'fft'
dnormgam: no visible global function definition for 'dgamma'
dnormgam: no visible global function definition for 'approx'
normgam.fit : mkdfftNormalGammaOptim : <anonymous>: no visible global
  function definition for 'dnorm'
normgam.fit : estimation_param_normexp_RMA : max.density: no visible
  global function definition for 'density'
normgam.fit: no visible global function definition for 'sd'
normgam.fit: no visible global function definition for 'median'
normgam.fit: no visible global function definition for 'IQR'
normgam.fit: no visible global function definition for 'optimx'
normgam.fit: no visible global function definition for 'coef'
normgam.signal: no visible global function definition for 'approx'
normgam.signal: no visible global function definition for 'hist'
Undefined global functions or variables:
  IQR approx coef density dgamma dnorm fft hist median optimx qgamma sd
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "IQR", "approx", "coef", "density", "dgamma",
             "dnorm", "fft", "median", "qgamma", "sd")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
mi.inference: no visible binding for global variable 'var'
mi.inference: no visible global function definition for 'qt'
mi.inference: no visible global function definition for 'pt'
Undefined global functions or variables:
  pt qt var
Consider adding
  importFrom("stats", "pt", "qt", "var")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
ajb.norm.test: no visible global function definition for 'rnorm'
frosini.norm.test: no visible global function definition for 'var'
frosini.norm.test: no visible global function definition for 'pnorm'
frosini.norm.test: no visible global function definition for 'rnorm'
geary.norm.test: no visible global function definition for 'rnorm'
hegazy1.norm.test: no visible global function definition for 'var'
hegazy1.norm.test: no visible global function definition for 'qnorm'
hegazy1.norm.test: no visible global function definition for 'rnorm'
hegazy2.norm.test: no visible global function definition for 'var'
hegazy2.norm.test: no visible global function definition for 'qnorm'
hegazy2.norm.test: no visible global function definition for 'rnorm'
jb.norm.test: no visible global function definition for 'rnorm'
kurtosis.norm.test: no visible global function definition for 'rnorm'
skewness.norm.test: no visible global function definition for 'rnorm'
spiegelhalter.norm.test: no visible global function definition for
  'rnorm'
wb.norm.test: no visible global function definition for 'qnorm'
wb.norm.test: no visible global function definition for 'var'
wb.norm.test: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  pnorm qnorm rnorm var
Consider adding
  importFrom("stats", "pnorm", "qnorm", "rnorm", "var")
to your NAMESPACE file.
normality.test1: no visible global function definition for 'cov.wt'
normality.test1: no visible global function definition for 'cor'
normality.test1: no visible global function definition for 'pnorm'
normality.test1: no visible global function definition for 'pchisq'
normality.test2: no visible global function definition for 'cov.wt'
normality.test2: no visible global function definition for 'cor'
normality.test2: no visible global function definition for 'acf'
normality.test2: no visible global function definition for 'pnorm'
normality.test2: no visible global function definition for 'pchisq'
whitenoise.test: no visible global function definition for 'acf'
whitenoise.test: no visible global function definition for 'spec.pgram'
whitenoise.test: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  acf cor cov.wt pchisq pnorm spec.pgram
Consider adding
  importFrom("stats", "acf", "cor", "cov.wt", "pchisq", "pnorm",
             "spec.pgram")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/norris.Rcheck/00install.out' for details.
Running 'testthat.R' [36s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > if (requireNamespace("testthat", quietly = TRUE)) {
  + 
  +   library(testthat)
  +   library(nosoi)
  + 
  +   test_check("nosoi")
  + 
  + }
  Loading required package: data.table
  -- 1. Error: Transmission is coherent with single introduction, constant pExit a
  Package 'dplyr', is needed for 'getDynamicOld'.
  Backtrace:
   1. nosoi:::getDynamicOld(test.nosoiA)
  
  == testthat results  ===========================================================
  [ OK: 335 | SKIPPED: 40 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: Transmission is coherent with single introduction, constant pExit and pTrans (@testSingleNone.R#31) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nos.Rcheck/00install.out' for details.
.newReportId : <anonymous>: no visible global function definition for
  'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
Malformed Description field: should contain one or more complete sentences.
Packages in Depends field not imported from:
  'smcure' 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
NPHMC: no visible global function definition for 'integrate'
NPHMC: no visible global function definition for 'qnorm'
NPHMC: no visible global function definition for 'pnorm'
NPHMC: no visible global function definition for 'lines'
NPHMC: no visible global function definition for 'smcure'
NPHMC: no visible global function definition for 'coxph'
Undefined global functions or variables:
  coxph integrate lines pnorm qnorm smcure
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "integrate", "pnorm", "qnorm")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
Running 'testthat.R' [19s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > #' Copyright(c) 2017-2020 R. Mark Sharp
  > #' This file is part of nprcgenekeepr
  > library(testthat)
  > library(nprcgenekeepr)
  > test_check("nprcgenekeepr")
  15 15 
  15 15 
  -- 1. Error: (unknown) (@test_makeRelationsClasses.R#5)  -----------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::suppressMessages(library(dplyr))
   3. base::library(dplyr)
   4. base::tryCatch(...)
   5. base:::tryCatchList(expr, classes, parentenv, handlers)
   6. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   7. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 714 | SKIPPED: 11 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test_makeRelationsClasses.R#5) 
  
  Error: testthat unit tests failed
  Execution halted
Found the following hidden files and directories:
  .Rapp.history
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
File
  LICENSE
is not mentioned in the DESCRIPTION file.
File 'NPsimex/R/onload.R':
  .onLoad calls:
    packageStartupMessage("NPsimex 0.2-1 loaded")

See section 'Good practice' in '?.onAttach'.

lambda.select: no visible global function definition for 'bw.nrd0'
lambda.select: no visible global function definition for 'bw.nrd'
lambda.select: no visible global function definition for 'bw.ucv'
lambda.select: no visible global function definition for 'bw.bcv'
lambda.select: no visible global function definition for 'bw.SJ'
plot.NPsimex: no visible global function definition for 'plot.default'
simex.H.density : simex1.est: no visible global function definition for
  'lm'
simex.density : simex1.est: no visible global function definition for
  'lm'
span.H.select: no visible global function definition for 'density'
span.H.select : conden : <anonymous>: no visible global function
  definition for 'dnorm'
span.select: no visible global function definition for 'density'
span.select : conden : <anonymous>: no visible global function
  definition for 'dnorm'
Undefined global functions or variables:
  bw.SJ bw.bcv bw.nrd bw.nrd0 bw.ucv density dnorm lm plot.default
Consider adding
  importFrom("graphics", "plot.default")
  importFrom("stats", "bw.SJ", "bw.bcv", "bw.nrd", "bw.nrd0", "bw.ucv",
             "density", "dnorm", "lm")
to your NAMESPACE file.
prepare_Rd: lambda.select.Rd:19-20: Dropping empty section \details
prepare_Rd: lambda.select.Rd:21-22: Dropping empty section \value
prepare_Rd: simex.H.density.Rd:28-29: Dropping empty section \details
prepare_Rd: simex.density.Rd:28-29: Dropping empty section \details
prepare_Rd: span.H.select.Rd:28-29: Dropping empty section \details
prepare_Rd: span.H.select.Rd:30-31: Dropping empty section \value
prepare_Rd: span.select.Rd:27-28: Dropping empty section \details
prepare_Rd: span.select.Rd:29-30: Dropping empty section \value
nps.test: no visible global function definition for 'qnorm'
nps.test: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  pnorm qnorm
Consider adding
  importFrom("stats", "pnorm", "qnorm")
to your NAMESPACE file.
'library' or 'require' call to 'parallel' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
npst: no visible global function definition for 'mclapply'
Undefined global functions or variables:
  mclapply
Error(s) in re-building vignettes:
--- re-building 'basic_functionalities.Rmd' using rmarkdown
--- finished re-building 'basic_functionalities.Rmd'

--- re-building 'example1.Rmd' using rmarkdown
Quitting from lines 22-25 (example1.Rmd) 
Error: processing vignette 'example1.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'example1.Rmd'

--- re-building 'example2.Rmd' using rmarkdown
Quitting from lines 22-25 (example2.Rmd) 
Error: processing vignette 'example2.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'example2.Rmd'

SUMMARY: processing the following files failed:
  'example1.Rmd' 'example2.Rmd'

Error: Vignette re-building failed.
Execution halted
Package in Depends field not imported from: 'mco'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
boundedPolyMutation: no visible global function definition for 'runif'
boundedSBXover: no visible global function definition for 'runif'
nsga2R : <anonymous>: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nsga3.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/NSM3.Rcheck/00install.out' for details.
.mcmc.bar: no visible global function definition for 'rnorm'
.mcmc.bar: no visible global function definition for 'runif'
.mcmc.comb: no visible global function definition for 'rnorm'
.mcmc.comb: no visible global function definition for 'runif'
.mcmc.rd: no visible global function definition for 'rnorm'
.mcmc.rd: no visible global function definition for 'runif'
.mcmc.trans: no visible global function definition for 'rnorm'
.mcmc.trans: no visible global function definition for 'runif'
.simulate.bar: no visible global function definition for 'rlnorm'
.simulate.bar: no visible global function definition for 'rbeta'
.simulate.bar: no visible global function definition for 'rbinom'
.simulate.comb: no visible global function definition for 'rlnorm'
.simulate.comb: no visible global function definition for 'rbeta'
.simulate.comb: no visible global function definition for 'rbinom'
.simulate.rd: no visible global function definition for 'rlnorm'
.simulate.rd: no visible global function definition for 'rbinom'
.simulate.trans: no visible global function definition for 'rlnorm'
.simulate.trans: no visible global function definition for 'rbinom'
Undefined global functions or variables:
  rbeta rbinom rlnorm rnorm runif
Consider adding
  importFrom("stats", "rbeta", "rbinom", "rlnorm", "rnorm", "runif")
to your NAMESPACE file.
Found the following significant warnings:
  Warning: namespace 'Rcpp' is not available and has been replaced
See 'd:/Rcompile/CRANpkg/local/4.0/nucim.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/nullabor.Rcheck/00install.out' for details.
installed size is 11.5Mb
  sub-directories of 1Mb or more:
    doc    7.4Mb
    libs   3.7Mb
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc    3.2Mb
    libs   2.2Mb
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'methods' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
File 'nws/R/zzz.R':
  .onLoad calls:
    require(methods)

Package startup functions should not change the search path.
See section 'Good practice' in '?.onAttach'.

blendOptions: warning in assign(names[i], new[[i]], env = options):
  partial argument match of 'env' to 'envir'
docall: warning in get(as.character(fun), env = .GlobalEnv, mode =
  "function"): partial argument match of 'env' to 'envir'
logMsg: no visible global function definition for 'flush.console'
nwsPkgInfo: no visible global function definition for
  'packageDescription'
initialize,nwsServer: no visible global function definition for
  'make.socket'
initialize,nwsServer: no visible global function definition for
  'close.socket'
Undefined global functions or variables:
  close.socket flush.console make.socket packageDescription
Consider adding
  importFrom("utils", "close.socket", "flush.console", "make.socket",
             "packageDescription")
to your NAMESPACE file.
installed size is  6.9Mb
  sub-directories of 1Mb or more:
    data   6.9Mb
Running examples in 'nzelect-Ex.R' failed
The error most likely occurred in:

> ### Name: GE2014
> ### Title: General Election Results 2014
> ### Aliases: GE2014
> ### Keywords: datasets
> 
> ### ** Examples
> 
> # the following matches the results published at
> # http://www.electionresults.govt.nz/electionresults_2014/e9/html/e9_part1.html
> library(tidyr)
Error: package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(nzelect)
  > 
  > test_check("nzelect")
  -- 1. Error: (unknown) (@test_totals_v_published2014.R#8)  ---------------------
  object 'Party' not found
  Backtrace:
   1. testthat::expect_equal(...)
   4. stats::filter(...)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test_totals_v_published2014.R#8) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'README.Rmd' using rmarkdown
Quitting from lines 47-59 (README.Rmd) 
Error: processing vignette 'README.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'README.Rmd'

SUMMARY: processing the following file failed:
  'README.Rmd'

Error: Vignette re-building failed.
Execution halted
Found the following hidden files and directories:
  .gitignore
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
Malformed Title field: should not end in a period.
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'methods' 'objectSignals'
A package should be listed in only one of these fields.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Color: no visible global function definition for 'new'
NegativeInteger: no visible global function definition for 'new'
NonnegativeInteger: no visible global function definition for 'new'
NonpositiveInteger: no visible global function definition for 'new'
PositiveInteger: no visible global function definition for 'new'
setMultipleEnum: no visible global function definition for 'setClass'
setMultipleEnum: no visible global function definition for 'prototype'
setNumericWithRange: no visible global function definition for
  'setClass'
setNumericWithRange: no visible global function definition for
  'prototype'
setPropertySet: no visible binding for global variable 'extends'
setPropertySet: no visible global function definition for 'setRefClass'
setSingleEnum: no visible global function definition for 'setClass'
setSingleEnum: no visible global function definition for 'prototype'
as.list,PropertySet: no visible global function definition for 'as'
initialize,SingleEnum: no visible global function definition for
  'callNextMethod'
initialize,SingleEnum: no visible global function definition for 'head'
Undefined global functions or variables:
  as callNextMethod extends head new prototype setClass setRefClass
Consider adding
  importFrom("methods", "as", "callNextMethod", "extends", "new",
             "prototype", "setClass", "setRefClass")
  importFrom("utils", "head")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'methods'
A package should be listed in only one of these fields.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Signal.gen: no visible global function definition for 'new'
Undefined global functions or variables:
  new
Consider adding
  importFrom("methods", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Packages in Depends field not imported from:
  'ROCR' 'e1071' 'mda' 'pls'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
log_wrapper: no visible global function definition for 'glm'
log_wrapper: no visible global function definition for 'binomial'
log_wrapper: no visible global function definition for 'coef'
log_wrapper: no visible global function definition for 'anova'
obliqueRF.default: no visible binding for global variable 'predict'
obliqueRF.default: no visible global function definition for
  'prediction'
obliqueRF.default: no visible global function definition for
  'performance'
pls_wrapper: no visible global function definition for 'kernelpls.fit'
pls_wrapper: no visible global function definition for 'coef'
ridge_slow_wrapper: no visible global function definition for
  'gen.ridge'
ridge_slow_wrapper: no visible global function definition for 'predict'
ridge_svd_wrapper: no visible global function definition for
  'gen.ridge'
rnd_wrapper: no visible global function definition for 'rnorm'
svm_wrapper: no visible global function definition for 'svm'
svm_wrapper: no visible global function definition for 'predict'
Undefined global functions or variables:
  anova binomial coef gen.ridge glm kernelpls.fit performance predict
  prediction rnorm svm
Consider adding
  importFrom("stats", "anova", "binomial", "coef", "glm", "predict",
             "rnorm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/obliqueRSF.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
IBMD: no visible global function definition for 'runif'
IBMD: no visible global function definition for 'quantile'
RAI: no visible global function definition for 'runif'
RAI: no visible global function definition for 'quantile'
Undefined global functions or variables:
  quantile runif
Consider adding
  importFrom("stats", "quantile", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/observer.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
obsSensCCC: no visible global function definition for 'coef'
obsSensCCC: no visible global function definition for 'confint'
obsSensCCN: no visible global function definition for 'coef'
obsSensCCN: no visible global function definition for 'confint'
obsSensCNN: no visible global function definition for 'coef'
obsSensCNN: no visible global function definition for 'confint'
obsSensCNN: no visible global function definition for 'sd'
obsSensCNN: no visible global function definition for 'model.matrix'
obsSensNNN: no visible global function definition for 'coef'
obsSensNNN: no visible global function definition for 'confint'
obsSensNNN: no visible global function definition for 'sd'
obsSensNNN: no visible global function definition for 'model.matrix'
Undefined global functions or variables:
  coef confint model.matrix sd
Consider adding
  importFrom("stats", "coef", "confint", "model.matrix", "sd")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/oceanis.Rcheck/00install.out' for details.
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    R            1.5Mb
    test_files   4.2Mb
installed size is 11.5Mb
  sub-directories of 1Mb or more:
    R      2.3Mb
    doc    2.3Mb
    help   2.7Mb
    libs   2.5Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/oddstream.Rcheck/00install.out' for details.
Found the following significant warnings:
  Warning: namespace 'dplyr' is not available and has been replaced
See 'd:/Rcompile/CRANpkg/local/4.0/ODEsensitivity.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ohenery.Rcheck/00install.out' for details.
Found the following hidden files and directories:
  .Rapp.history
  data/.Rapp.history
  data/.Rhistory
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'RCurl' 'maps'
A package should be listed in only one of these fields.
mapvar: no visible global function definition for 'data'
mapvar: no visible binding for global variable 'state.fips'
mapvar: no visible global function definition for 'rgb'
mapvar: no visible global function definition for 'rect'
mapvar: no visible global function definition for 'text'
rowScrape: no visible global function definition for 'tail'
rowScrape: no visible global function definition for 'head'
scrapeTable: no visible binding for global variable 'tail'
Undefined global functions or variables:
  data head rect rgb state.fips tail text
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "rect", "text")
  importFrom("utils", "data", "head", "tail")
to your NAMESPACE file.
Running examples in 'ojsr-Ex.R' failed
The error most likely occurred in:

> ### Name: parse_base_url
> ### Title: Parses urls against OJS routing conventions and retrieves the
> ###   base url
> ### Aliases: parse_base_url
> 
> ### ** Examples
> 
> 
> mix_links <- c(
+   'https://dspace.palermo.edu/ojs/index.php/psicodebate/issue/archive',
+   'https://publicaciones.sociales.uba.ar/index.php/psicologiasocial/article/view/2903'
+ )
> base_url <- ojsr::parse_base_url(input_url = mix_links)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: <Anonymous> ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(ojsr)
  > 
  > test_check("ojsr")
  -- 1. Error: (unknown) (@test_url_parsers.R#10)  -------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. ojsr::parse_base_url(input_url = url_sample_test)
   2. ojsr:::process_urls(input_url)
   3. dplyr::left_join
   4. base::getExportedValue(pkg, name)
   5. base::asNamespace(ns)
   6. base::getNamespace(ns)
   7. base::loadNamespace(name)
   8. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test_url_parsers.R#10) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'ojsr-vignette.Rmd' using rmarkdown
Quitting from lines 55-82 (ojsr-vignette.Rmd) 
Error: processing vignette 'ojsr-vignette.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'ojsr-vignette.Rmd'

SUMMARY: processing the following file failed:
  'ojsr-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
avgokmts: no visible global function definition for 'aggregate'
downloadstn: no visible global function definition for 'read.csv'
nearstn: no visible binding for global variable 'okstations'
nearstn: no visible binding for global variable 'Commissioned'
nearstn: no visible binding for global variable 'Decommissioned'
okcurobs: no visible global function definition for 'read.csv'
okmts: no visible binding for global variable 'okstations'
okmts: no visible binding for global variable 'TIME'
retrievemts: no visible global function definition for 'read.csv'
totalprecip: no visible binding for global variable 'TIME'
totalprecip: no visible global function definition for 'aggregate'
vincenty: no visible global function definition for 'runif'
Undefined global functions or variables:
  Commissioned Decommissioned TIME aggregate okstations read.csv runif
Consider adding
  importFrom("stats", "aggregate", "runif")
  importFrom("utils", "read.csv")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
OLScurve: no visible global function definition for 'as.formula'
OLScurve: no visible global function definition for 'na.omit'
OLScurve: no visible global function definition for 'lm'
OLScurve: no visible global function definition for 'predict'
OLScurve: no visible global function definition for 'residuals'
OLScurve: no visible global function definition for 'model.frame'
OLScurve: no visible global function definition for 'model.matrix'
plot.OLScurve : plotOLScurve: no visible global function definition for
  'reshape'
print.OLScurve: no visible global function definition for 'na.omit'
print.OLScurve: no visible global function definition for 'model.frame'
print.OLScurve: no visible global function definition for
  'model.matrix'
print.OLScurve: no visible global function definition for 'cov'
print.OLScurve: no visible global function definition for 'cor'
print.OLScurve: no visible global function definition for 'sd'
subjplot.OLScurve : plotOLScurve: no visible global function definition
  for 'devAskNewPage'
subjplot.OLScurve : plotOLScurve: no visible global function definition
  for 'reshape'
subjplot.OLScurve : plotOLScurve : mypanel: no visible global function
  definition for 'gray'
subjplot.OLScurve: no visible global function definition for
  'devAskNewPage'
Undefined global functions or variables:
  as.formula cor cov devAskNewPage gray lm model.frame model.matrix
  na.omit predict reshape residuals sd
Consider adding
  importFrom("grDevices", "devAskNewPage", "gray")
  importFrom("stats", "as.formula", "cor", "cov", "lm", "model.frame",
             "model.matrix", "na.omit", "predict", "reshape",
             "residuals", "sd")
to your NAMESPACE file.
fhcor: no visible global function definition for 'cor'
Undefined global functions or variables:
  cor
Consider adding
  importFrom("stats", "cor")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/omicwas.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/omopr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/omu.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/OncoBayes2.Rcheck/00install.out' for details.
MLparameters: no visible global function definition for 'optim'
comp.freq: no visible global function definition for 'x11'
comp.freq: no visible global function definition for 'par'
Undefined global functions or variables:
  optim par x11
Consider adding
  importFrom("grDevices", "x11")
  importFrom("graphics", "par")
  importFrom("stats", "optim")
to your NAMESPACE file.
generate.data: no visible global function definition for 'rbinom'
least.common.ancestor: no visible global function definition for
  'na.omit'
oncotree.fit : estimate.error.rates: no visible global function
  definition for 'optim'
plot.boottree: no visible global function definition for 'par'
plot.boottree: no visible global function definition for
  'dev.interactive'
plot.boottree: no visible global function definition for 'mtext'
plot.oncotree: no visible global function definition for 'par'
plot.oncotree: no visible global function definition for 'xinch'
plot.oncotree: no visible global function definition for 'yinch'
plot.oncotree: no visible global function definition for 'lines'
plot.oncotree: no visible global function definition for 'rect'
plot.oncotree: no visible global function definition for 'strwidth'
plot.oncotree: no visible global function definition for 'strheight'
plot.oncotree: no visible global function definition for 'text'
Undefined global functions or variables:
  dev.interactive lines mtext na.omit optim par rbinom rect strheight
  strwidth text xinch yinch
Consider adding
  importFrom("grDevices", "dev.interactive")
  importFrom("graphics", "lines", "mtext", "par", "rect", "strheight",
             "strwidth", "text", "xinch", "yinch")
  importFrom("stats", "na.omit", "optim", "rbinom")
to your NAMESPACE file.
Running examples in 'oncrawlR-Ex.R' failed
The error most likely occurred in:

> ### Name: oncrawlSplitURL
> ### Title: Split URLs
> ### Aliases: oncrawlSplitURL
> 
> ### ** Examples
> 
> mylist <- c("/cat/domain/web/","/cat/","/cat/domain/")
> oncrawlSplitURL(mylist, 2)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: oncrawlSplitURL ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/onemap.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/onemapsgapi.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/OOBCurve.Rcheck/00install.out' for details.
Running examples in 'oolong-Ex.R' failed
The error most likely occurred in:

> ### Name: create_oolong
> ### Title: Generate an oolong test
> ### Aliases: create_oolong
> 
> ### ** Examples
> 
> ## Creation of oolong test with only word intrusion test
> data(abstracts_stm)
> data(abstracts)
> oolong_test <- create_oolong(input_model = abstracts_stm)
Error: `map_df()` requires dplyr
Backtrace:
    x
 1. \-oolong::create_oolong(input_model = abstracts_stm)
 2.   \-Oolong_test_tm$new(...)
 3.     \-.subset2(public_bind_env, "initialize")(...)
 4.       \-oolong:::.generate_test_content(...)
 5.         \-oolong:::.generate_word_intrusion_test(...)
 6.           \-purrr::map_dfr(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'overview.Rmd' using rmarkdown
Quitting from lines 44-48 (overview.Rmd) 
Error: processing vignette 'overview.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'overview.Rmd'

SUMMARY: processing the following file failed:
  'overview.Rmd'

Error: Vignette re-building failed.
Execution halted
ci.prop: no visible global function definition for 'qf'
ci.prop: no visible global function definition for 'qnorm'
ePCP: no visible global function definition for 'qnorm'
sevennum: no visible global function definition for 'na.omit'
sevennum: no visible global function definition for 'quantile'
Undefined global functions or variables:
  na.omit qf qnorm quantile
Consider adding
  importFrom("stats", "na.omit", "qf", "qnorm", "quantile")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/openair.Rcheck/00install.out' for details.
Package vignette with placeholder title 'Vignette Title':
  'opencage.Rmd'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0gcc8/OpenCL.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'unix'
GNU make is a SystemRequirements.
installed size is 29.6Mb
  sub-directories of 1Mb or more:
    libs   19.8Mb
    share   9.7Mb
Running 'testthat.R' [50s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > testthat::test_check("openEBGM")
  Loading required package: openEBGM
  -- 1. Error: (unknown) (@testA_Counts.R#246)  ----------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. dplyr::as_tibble
   2. base::getExportedValue(pkg, name)
   3. base::asNamespace(ns)
   4. base::getNamespace(ns)
   5. base::loadNamespace(name)
   6. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 239 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@testA_Counts.R#246) 
  
  Error: testthat unit tests failed
  Execution halted
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    doc    2.1Mb
    libs   3.0Mb
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   5.3Mb
Running examples in 'openintro-Ex.R' failed
The error most likely occurred in:

> ### Name: acs12
> ### Title: American Community Survey, 2012
> ### Aliases: acs12
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/OpenLand.Rcheck/00install.out' for details.
installed size is 18.4Mb
  sub-directories of 1Mb or more:
    R        2.5Mb
    libs     8.1Mb
    models   4.7Mb
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    java     1.2Mb
    models   6.0Mb
Package suggested but not available for checking: 'openNLPmodels.en'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/OpenRepGrid.ic.Rcheck/00install.out' for details.
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    doc    2.6Mb
    libs   5.7Mb
installed size is  9.3Mb
  sub-directories of 1Mb or more:
    extdata   8.9Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/opentraj.Rcheck/00install.out' for details.
Running 'testthat.R' [11s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(opentripplanner)
  > 
  > test_check("opentripplanner")
  -- 1. Error: test otp_json2sf (@test_01_internal_funcs.R#47)  ------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. opentripplanner:::otp_json2sf(obj = json_example_drive)
   2. base::lapply(...)
   3. opentripplanner:::FUN(X[[i]], ...)
   4. dplyr::bind_rows
   5. base::getExportedValue(pkg, name)
   6. base::asNamespace(ns)
   7. base::getNamespace(ns)
   8. base::loadNamespace(name)
   9. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 63 | SKIPPED: 22 | WARNINGS: 1 | FAILED: 1 ]
  1. Error: test otp_json2sf (@test_01_internal_funcs.R#47) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'opera-vignette.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Loading required package: nlme
This is mgcv 1.8-32. For overview type 'help("mgcv-package")'.
Loading required package: lattice
Loading required package: ggplot2
Quitting from lines 107-111 (./../inst/rmd/example.Rmd) 
Quitting from lines 25-27 (./../inst/rmd/example.Rmd) 
Error: processing vignette 'opera-vignette.Rmd' failed with diagnostics:
package or namespace load failed for 'caret' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'opera-vignette.Rmd'

SUMMARY: processing the following file failed:
  'opera-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: 'gurobi'
prepare_Rd: distance.Rd:21-22: Dropping empty section \details
prepare_Rd: distance.Rd:32-33: Dropping empty section \note
prepare_Rd: filter.Rd:26-27: Dropping empty section \details
prepare_Rd: filter.Rd:28-29: Dropping empty section \value
prepare_Rd: filter.Rd:36-37: Dropping empty section \note
prepare_Rd: findP.Rd:21-22: Dropping empty section \details
prepare_Rd: findP.Rd:34-35: Dropping empty section \note
prepare_Rd: ops-package.Rd:30-31: Dropping empty section \seealso
Package in Depends field not imported from: 'MASS'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
nlsolve: no visible global function definition for 'optim'
nlsolve: no visible global function definition for 'runif'
optAUC: no visible global function definition for 'var'
Undefined global functions or variables:
  optim runif var
Consider adding
  importFrom("stats", "optim", "runif", "var")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
avg2Lower: no visible global function definition for 'optimize'
classificationError.data.frame: no visible binding for global variable
  'na.omit'
classificationError.data.frame: no visible global function definition
  for 'terms'
classificationError.data.frame: no visible binding for global variable
  'predict'
classpredict.lda: no visible global function definition for 'predict'
simData: no visible global function definition for 'rnorm'
simData: no visible global function definition for 'runif'
simData: no visible global function definition for 'var'
tnormAvg: no visible global function definition for 'dnorm'
tnormAvg: no visible global function definition for 'pnorm'
yapprox: no visible global function definition for 'approx'
Undefined global functions or variables:
  approx dnorm na.omit optimize pnorm predict rnorm runif terms var
Consider adding
  importFrom("stats", "approx", "dnorm", "na.omit", "optimize", "pnorm",
             "predict", "rnorm", "runif", "terms", "var")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Package which this enhances but not available for checking: 'gurobi'
print.optimbase: no visible global function definition for 'str'
Undefined global functions or variables:
  str
Consider adding
  importFrom("utils", "str")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'Introduction.Rmd' using rmarkdown
Quitting from lines 130-132 (Introduction.Rmd) 
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Introduction.Rmd'

SUMMARY: processing the following file failed:
  'Introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/optimos.prime.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Package vignette with placeholder title 'Vignette Title':
  'UserGuide.Rmd'
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    extdata   1.8Mb
    libs      2.3Mb
getMinimumArborescence: no visible global function definition for
  'capture.output'
getMinimumCutTree: no visible global function definition for
  'capture.output'
getMinimumCutTree: no visible global function definition for 'par'
getMinimumSpanningTree: no visible global function definition for
  'capture.output'
getShortestPathTree: no visible global function definition for
  'capture.output'
Undefined global functions or variables:
  capture.output par
Consider adding
  importFrom("graphics", "par")
  importFrom("utils", "capture.output")
to your NAMESPACE file.
Package required but not available: 'ROracle'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Agrestiind.CI: no visible global function definition for 'qnorm'
BPexact.CI: no visible global function definition for 'uniroot'
BPmidp.CI: no visible global function definition for 'uniroot'
Cornfieldexact.CI: no visible global function definition for 'uniroot'
Cornfieldmidp.CI: no visible global function definition for 'uniroot'
Gart.CI: no visible global function definition for 'qnorm'
Invsinh.CI: no visible global function definition for 'qnorm'
Woolf.CI: no visible global function definition for 'qnorm'
Undefined global functions or variables:
  qnorm uniroot
Consider adding
  importFrom("stats", "qnorm", "uniroot")
to your NAMESPACE file.
'library' or 'require' call to 'psych' which was already attached by Depends.
  Please remove these calls from your code.
'library' or 'require' calls to packages already attached by Depends:
  'Matrix' 'splines'
  Please remove these calls from your code.
bgmm : SplineGMM : moment.conditions: warning in matrix(nr = n.para, nc
  = J): partial argument match of 'nr' to 'nrow'
bgmm : SplineGMM : moment.conditions: warning in matrix(nr = n.para, nc
  = J): partial argument match of 'nc' to 'ncol'
bgmm: no visible global function definition for 'ecdf'
bgmm : SplineGMM: no visible global function definition for
  'constrOptim'
blr: no visible global function definition for 'ecdf'
blr: no visible global function definition for 'constrOptim'
blr: no visible global function definition for 'lm'
parentcdf : combinations: no visible global function definition for
  'combn'
parentcdf : solver: no visible global function definition for 'uniroot'
Undefined global functions or variables:
  combn constrOptim ecdf lm uniroot
Consider adding
  importFrom("stats", "constrOptim", "ecdf", "lm", "uniroot")
  importFrom("utils", "combn")
to your NAMESPACE file.
'library' or 'require' call to 'methods' which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'grid' 'lattice' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Error(s) in re-building vignettes:
--- re-building 'ordinalClust.Rmd' using rmarkdown

Attaching package: 'ordinalClust'

The following object is masked from 'package:graphics':

    plot

The following objects are masked from 'package:base':

    plot, summary

`stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
Warning: Removed 14 rows containing missing values (geom_bar).
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Loading required package: lattice
Quitting from lines 271-290 (ordinalClust.Rmd) 
Error: processing vignette 'ordinalClust.Rmd' failed with diagnostics:
package or namespace load failed for 'caret' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'ordinalClust.Rmd'

SUMMARY: processing the following file failed:
  'ordinalClust.Rmd'

Error: Vignette re-building failed.
Execution halted
genRidge: no visible global function definition for 'plogis'
ordGene: no visible global function definition for 'anova'
ordGene: no visible global function definition for 'lm'
ordSelect: no visible binding for global variable 'sd'
ordSmooth: no visible binding for global variable 'sd'
plot.ordPen: no visible global function definition for 'grey'
plot.ordPen: no visible global function definition for 'devAskNewPage'
plot.ordPen: no visible global function definition for 'lines'
predict.ordPen: no visible global function definition for 'plogis'
Undefined global functions or variables:
  anova devAskNewPage grey lines lm plogis sd
Consider adding
  importFrom("grDevices", "devAskNewPage", "grey")
  importFrom("graphics", "lines")
  importFrom("stats", "anova", "lm", "plogis", "sd")
to your NAMESPACE file.
Package vignette with placeholder title 'Vignette Title':
  'intro.Rmd'
ORICC1: no visible binding for global variable 'sd'
ORICC1: no visible global function definition for 'write.table'
ORICC1: no visible global function definition for 'postscript'
ORICC1: no visible global function definition for 'jpeg'
ORICC1: no visible global function definition for 'points'
ORICC1: no visible global function definition for 'dev.off'
ORICC1: no visible global function definition for 'par'
ORICC2: no visible binding for global variable 'sd'
ORICC2: no visible global function definition for 'write.table'
ORICC2: no visible global function definition for 'postscript'
ORICC2: no visible global function definition for 'jpeg'
ORICC2: no visible global function definition for 'points'
ORICC2: no visible global function definition for 'dev.off'
ORICC2: no visible global function definition for 'par'
Undefined global functions or variables:
  dev.off jpeg par points postscript sd write.table
Consider adding
  importFrom("grDevices", "dev.off", "jpeg", "postscript")
  importFrom("graphics", "par", "points")
  importFrom("stats", "sd")
  importFrom("utils", "write.table")
to your NAMESPACE file.
File 'OriGen/libs/i386/OriGen.dll':
  Found '_gfortran_st_close', possibly from 'close' (Fortran)
    Object: 'OriGen.o'
  Found '_gfortran_st_open', possibly from 'open' (Fortran)
    Object: 'OriGen.o'
File 'OriGen/libs/x64/OriGen.dll':
  Found '_gfortran_st_close', possibly from 'close' (Fortran)
    Object: 'OriGen.o'
  Found '_gfortran_st_open', possibly from 'open' (Fortran)
    Object: 'OriGen.o'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Malformed Description field: should contain one or more complete sentences.
mdr.c: no visible global function definition for 'combn'
Undefined global functions or variables:
  combn
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    R       1.0Mb
    nifti   3.8Mb
Malformed Description field: should contain one or more complete sentences.
Packages in Depends field not imported from:
  'Rcpp' 'genefilter' 'gtools' 'nlme'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
est.lme : <anonymous>: warning in rank(iru, ties = "min"): partial
  argument match of 'ties' to 'ties.method'
est.lme : <anonymous>: no visible global function definition for 'lme'
est.lme : <anonymous>: no visible global function definition for
  'VarCorr'
guo: no visible global function definition for 'p.adjust'
guo: no visible global function definition for 'na.omit'
pttest : ptest: no visible global function definition for 'na.omit'
srt : <anonymous>: no visible global function definition for
  'rowttests'
Undefined global functions or variables:
  VarCorr lme na.omit p.adjust rowttests
Consider adding
  importFrom("stats", "na.omit", "p.adjust")
to your NAMESPACE file.
plot.SplineBasis: no visible global function definition for 'matplot'
plot,SplineBasis-matrix: no visible global function definition for
  'matplot'
plot,SplineBasis-missing: no visible global function definition for
  'matplot'
Undefined global functions or variables:
  matplot
Consider adding
  importFrom("graphics", "matplot")
to your NAMESPACE file.
'library' or 'require' call to 'polynom' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'polynom'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
chebyshev.c.polynomials: no visible global function definition for
  'polynomial'
chebyshev.s.polynomials: no visible global function definition for
  'polynomial'
chebyshev.t.polynomials: no visible global function definition for
  'polynomial'
chebyshev.u.polynomials: no visible global function definition for
  'polynomial'
gegenbauer.polynomials: no visible global function definition for
  'polynomial'
ghermite.h.polynomials: no visible global function definition for
  'polynomial'
glaguerre.polynomials: no visible global function definition for
  'polynomial'
hermite.h.polynomials: no visible global function definition for
  'polynomial'
hermite.he.polynomials: no visible global function definition for
  'polynomial'
jacobi.g.polynomials: no visible global function definition for
  'polynomial'
jacobi.p.polynomials: no visible global function definition for
  'polynomial'
legendre.polynomials: no visible global function definition for
  'polynomial'
monic.polynomials: no visible global function definition for
  'polynomial'
orthogonal.polynomials: no visible global function definition for
  'polynomial'
orthonormal.polynomials: no visible global function definition for
  'polynomial'
polynomial.derivatives: no visible global function definition for
  'deriv'
polynomial.integrals: no visible global function definition for
  'integral'
polynomial.values: no visible global function definition for 'predict'
schebyshev.t.polynomials: no visible global function definition for
  'polynomial'
schebyshev.u.polynomials: no visible global function definition for
  'polynomial'
slegendre.polynomials: no visible global function definition for
  'polynomial'
Undefined global functions or variables:
  deriv integral polynomial predict
Consider adding
  importFrom("stats", "deriv", "predict")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/oRus.Rcheck/00install.out' for details.
'library' or 'require' calls in package code:
  'igraph' 'sp'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
as_igraph : <anonymous>: no visible global function definition for
  'distHaversine'
as_igraph: no visible global function definition for 'graph.edgelist'
as_igraph: no visible global function definition for 'E'
as_igraph: no visible global function definition for 'E<-'
as_sp_lines: no visible global function definition for 'Lines'
as_sp_points: no visible global function definition for
  'SpatialPointsDataFrame'
as_sp_polygons: no visible global function definition for 'Polygons'
as_sp_polygons: no visible global function definition for
  'SpatialPolygons'
as_sp_polygons: no visible global function definition for
  'SpatialPolygonsDataFrame'
make_SLDF: no visible global function definition for 'SpatialLines'
make_SLDF: no visible global function definition for
  'SpatialLinesDataFrame'
osm_crs: no visible global function definition for 'CRS'
plot.osmar: no visible global function definition for 'gray'
plot_nodes: no visible global function definition for 'points'
plot_ways: no visible global function definition for 'lines'
ways_nodes2Line: no visible global function definition for 'Line'
ways_nodes2Polygon: no visible global function definition for 'Polygon'
Undefined global functions or variables:
  CRS E E<- Line Lines Polygon Polygons SpatialLines
  SpatialLinesDataFrame SpatialPointsDataFrame SpatialPolygons
  SpatialPolygonsDataFrame distHaversine graph.edgelist gray lines
  points
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "lines", "points")
to your NAMESPACE file.
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc    3.6Mb
    libs   2.6Mb
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    doc   7.2Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/OSNMTF.Rcheck/00install.out' for details.
Package vignette with placeholder title 'Vignette Title':
  'OTclust.Rmd'
Package suggested but not available for checking: 'Rcplex'
Running examples in 'otsad-Ex.R' failed
The error most likely occurred in:

> ### Name: CpKnnCad
> ### Title: Classic processing KNN based Conformal Anomaly Detector
> ###   (KNN-CAD)
> ### Aliases: CpKnnCad
> 
> ### ** Examples
> 
> ## Generate data
> set.seed(100)
> n <- 350
> x <- sample(1:100, n, replace = TRUE)
> x[70:90] <- sample(110:115, 21, replace = TRUE)
> x[25] <- 200
> x[320] <- 170
> df <- data.frame(timestamp = 1:n, value = x)
> 
> ## Set parameters
> params.KNN <- list(threshold = 1, n.train = 50, l = 19, k = 17)
> 
> ## Calculate anomalies
> result <- CpKnnCad(
+   data = df$value,
+   n.train = params.KNN$n.train,
+   threshold = params.KNN$threshold,
+   l = params.KNN$l,
+   k = params.KNN$k,
+   ncm.type = "ICAD",
+   reducefp = TRUE
+ )
> 
> ## Plot results
> res <- cbind(df, result)
> PlotDetections(res, title = "KNN-CAD ANOMALY DETECTOR")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: PlotDetections ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    doc    3.7Mb
    libs   2.4Mb
Error(s) in re-building vignettes:
--- re-building 'intro-to-outcomerate.Rmd' using rmarkdown
Quitting from lines 29-34 (intro-to-outcomerate.Rmd) 
Error: processing vignette 'intro-to-outcomerate.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'intro-to-outcomerate.Rmd'

SUMMARY: processing the following file failed:
  'intro-to-outcomerate.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'outRanger.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Quitting from lines 120-127 (outRanger.Rmd) 
Error: processing vignette 'outRanger.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'outRanger.Rmd'

SUMMARY: processing the following file failed:
  'outRanger.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/OutlierDetection.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
odm: no visible binding for global variable 'sd'
odm : <anonymous>: no visible global function definition for 'sd'
odm : <anonymous>: no visible global function definition for 'quantile'
odm: no visible global function definition for 'prcomp'
quant.const: no visible global function definition for 'quantile'
quant.const.D: no visible global function definition for 'reshape'
quant.const.D: no visible global function definition for 'quantile'
quant.linear.D: no visible global function definition for 'reshape'
quant.nonlin : FrankModel: no visible global function definition for
  'qt'
quant.nonlin : FrankModel: no visible global function definition for
  'pt'
quant.nonlin: no visible global function definition for 'predict'
quant.nonlin.D: no visible global function definition for 'reshape'
quant.nonlin.D: no visible global function definition for 'predict'
quant.nonpar.D: no visible global function definition for 'reshape'
rgrubbs.test: no visible global function definition for 'sd'
plot,OutlierDM-missing: no visible binding for global variable 'pch'
summary,OutlierDM: no visible global function definition for 'head'
Undefined global functions or variables:
  head pch prcomp predict pt qt quantile reshape sd
Consider adding
  importFrom("stats", "prcomp", "predict", "pt", "qt", "quantile",
             "reshape", "sd")
  importFrom("utils", "head")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/OutliersO3.Rcheck/00install.out' for details.
Running examples in 'outreg-Ex.R' failed
The error most likely occurred in:

> ### Name: outreg
> ### Title: Generate Regression Table
> ### Aliases: outreg
> 
> ### ** Examples
> 
> fitlist <- list(lm(mpg ~ cyl, data = mtcars),
+                 lm(mpg ~ cyl + wt + hp, data = mtcars),
+                 lm(mpg ~ cyl + wt + hp + drat, data = mtcars))
> outreg(fitlist)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: outreg ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ouxy.Rcheck/00install.out' for details.
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(owmr)
  owmr 0.8.2
     another crazy way to talk to OpenWeatherMap's API
     Documentation: type ?owmr or https://crazycapivara.github.io/owmr/
     Issues, notes and bleeding edge: https://github.com/crazycapivara/owmr/
  
  It is recommended that you store your api key in an environment variable called OWM_API_KEY.
  
  > 
  > test_check("owmr")
  -- 1. Error: parse response to tibble (@test_current_multiple.R#26)  -----------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    9. owmr::owmr_as_tibble(.)
   14. tidyr::unnest
   15. base::getExportedValue(pkg, name)
   16. base::asNamespace(ns)
   17. base::getNamespace(ns)
   18. base::loadNamespace(name)
   21. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   22. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: parse forecast response (@test_forecast.R#40)  --------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. owmr::owmr_as_tibble(resp)
    2. owmr:::owmr_as_tibble.default(resp)
    6. tidyr::unnest
    7. base::getExportedValue(pkg, name)
    8. base::asNamespace(ns)
    9. base::getNamespace(ns)
   10. base::loadNamespace(name)
   13. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   14. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 30 | SKIPPED: 0 | WARNINGS: 3 | FAILED: 2 ]
  1. Error: parse response to tibble (@test_current_multiple.R#26) 
  2. Error: parse forecast response (@test_forecast.R#40) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/oxcovid19.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/oysteR.Rcheck/00install.out' for details.
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    data   5.7Mb
loadCSVtoP2distance: no visible global function definition for
  'read.table'
p2distance : calcularDistancia: no visible binding for global variable
  'sd'
p2distance : ordenarVariables: no visible global function definition
  for 'cor'
p2distance : calculoFactoresPonderacion: no visible global function
  definition for 'lm'
p2distance: no visible global function definition for 'cor'
Undefined global functions or variables:
  cor lm read.table sd
Consider adding
  importFrom("stats", "cor", "lm", "sd")
  importFrom("utils", "read.table")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'survival' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
p3state: no visible global function definition for 'survfit'
p3state: no visible global function definition for 'terms'
p3state: no visible global function definition for 'as.formula'
p3state: no visible global function definition for 'coxph'
p3state: no visible binding for global variable 'na.exclude'
plot.p3state: no visible global function definition for 'matplot'
plot.p3state: no visible global function definition for 'devAskNewPage'
plot.p3state: no visible global function definition for 'persp'
plot.p3state: no visible global function definition for 'colours'
plot.p3state: no visible global function definition for
  'filled.contour'
Undefined global functions or variables:
  as.formula colours coxph devAskNewPage filled.contour matplot
  na.exclude persp survfit terms
Consider adding
  importFrom("grDevices", "colours", "devAskNewPage")
  importFrom("graphics", "filled.contour", "matplot", "persp")
  importFrom("stats", "as.formula", "na.exclude", "terms")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
pacbpred : thetaFunc: no visible global function definition for 'lsfit'
pacbpred : thetaFunc: no visible global function definition for 'rnorm'
pacbpred: no visible global function definition for 'var'
pacbpred: no visible global function definition for 'runif'
pacbpred: no visible global function definition for 'rnorm'
pacbpred: no visible global function definition for 'rbinom'
Undefined global functions or variables:
  lsfit rbinom rnorm runif var
Consider adding
  importFrom("stats", "lsfit", "rbinom", "rnorm", "runif", "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/packagetrackr.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
[,ClassW: warning in switch(EXP = i, u1 = {: partial argument match of
  'EXP' to 'EXPR'
[,ClassW: warning in return(x@u1): partial argument match of 'EXP' to
  'EXPR'
[,ClassW: warning in }, u2 = {: partial argument match of 'EXP' to
  'EXPR'
[,ClassW: warning in return(x@u2): partial argument match of 'EXP' to
  'EXPR'
[,ClassW: warning in }, w1 = {: partial argument match of 'EXP' to
  'EXPR'
[,ClassW: warning in return(x@w1): partial argument match of 'EXP' to
  'EXPR'
[,ClassW: warning in }): partial argument match of 'EXP' to 'EXPR'
[<-,ClassW: warning in switch(EXP = i, u1 = {: partial argument match
  of 'EXP' to 'EXPR'
[<-,ClassW: warning in x@u1 <- value: partial argument match of 'EXP'
  to 'EXPR'
[<-,ClassW: warning in }, u2 = {: partial argument match of 'EXP' to
  'EXPR'
[<-,ClassW: warning in x@u2 <- value: partial argument match of 'EXP'
  to 'EXPR'
[<-,ClassW: warning in }, w1 = {: partial argument match of 'EXP' to
  'EXPR'
[<-,ClassW: warning in x@w1 <- value: partial argument match of 'EXP'
  to 'EXPR'
[<-,ClassW: warning in }): partial argument match of 'EXP' to 'EXPR'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PAC.Rcheck/00install.out' for details.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    data   1.7Mb
    doc    1.3Mb
    libs   2.0Mb
Running examples in 'padr-Ex.R' failed
The error most likely occurred in:

> ### Name: center_interval
> ### Title: Shift to the middle of each interval
> ### Aliases: center_interval
> 
> ### ** Examples
> 
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Error(s) in re-building vignettes:
--- re-building 'padr.Rmd' using rmarkdown
Quitting from lines 27-36 (padr.Rmd) 
Error: processing vignette 'padr.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'padr.Rmd'

--- re-building 'padr_custom.Rmd' using rmarkdown
Quitting from lines 19-41 (padr_custom.Rmd) 
Error: processing vignette 'padr_custom.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'padr_custom.Rmd'

--- re-building 'padr_implementation.Rmd' using rmarkdown
Quitting from lines 39-43 (padr_implementation.Rmd) 
Error: processing vignette 'padr_implementation.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'padr_implementation.Rmd'

SUMMARY: processing the following files failed:
  'padr.Rmd' 'padr_custom.Rmd' 'padr_implementation.Rmd'

Error: Vignette re-building failed.
Execution halted
paf: no visible global function definition for 'as.formula'
paf: no visible global function definition for 'model.response'
paf: no visible global function definition for 'model.frame'
paf: no visible global function definition for 'model.matrix'
plot.paf: no visible global function definition for 'lines'
Undefined global functions or variables:
  as.formula lines model.frame model.matrix model.response
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "as.formula", "model.frame", "model.matrix",
             "model.response")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
CalGIF: no visible binding for global variable 'PAGIData'
CalGIF2: no visible binding for global variable 'PAGIData'
PAGI.Main: no visible binding for global variable 'PAGIData'
PAGI.Main: no visible global function definition for 'p.adjust'
PAGI.Main: no visible global function definition for 'pt'
getclass.labels: no visible binding for global variable 'ExampleData'
getdataset: no visible binding for global variable 'ExampleData'
Undefined global functions or variables:
  ExampleData PAGIData p.adjust pt
Consider adding
  importFrom("stats", "p.adjust", "pt")
to your NAMESPACE file.
paired.Loc: no visible global function definition for 'qt'
paired.Loc: no visible global function definition for 'median'
paired.Loc: no visible global function definition for 'qsignrank'
paired.Loc: no visible global function definition for 'qnorm'
paired.Scale: no visible global function definition for 'var'
paired.Scale: no visible global function definition for 'cor'
paired.Scale: no visible global function definition for 'qt'
paired.Scale: no visible global function definition for 'median'
paired.Scale: no visible global function definition for 'qnorm'
Undefined global functions or variables:
  cor median qnorm qsignrank qt var
Consider adding
  importFrom("stats", "cor", "median", "qnorm", "qsignrank", "qt", "var")
to your NAMESPACE file.
Package in Depends field not imported from: 'grid'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
pairsD3: no visible global function definition for 'gray.colors'
Undefined global functions or variables:
  gray.colors
Consider adding
  importFrom("grDevices", "gray.colors")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pairwiseComparisons.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PakPC2017.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/palaeoSig.Rcheck/00install.out' for details.
Package which this enhances but not available for checking: 'CorShrink'
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' calls to packages already attached by Depends:
  'MASS' 'lattice' 'vegan'
  Please remove these calls from your code.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pammtools.Rcheck/00install.out' for details.
GOpredict: no visible global function definition for 'fisher.test'
KEGGpredict: no visible global function definition for 'fisher.test'
ProteinCluster: no visible global function definition for 'ecdf'
ProteinCluster: no visible global function definition for 'as.hclust'
ProteinCluster: no visible global function definition for
  'as.dendrogram'
ProteinCluster : addE: no visible global function definition for
  'is.leaf'
SignificantSubcluster: no visible global function definition for
  'order.dendrogram'
SignificantSubcluster: no visible global function definition for
  'fisher.test'
Undefined global functions or variables:
  as.dendrogram as.hclust ecdf fisher.test is.leaf order.dendrogram
Consider adding
  importFrom("stats", "as.dendrogram", "as.hclust", "ecdf",
             "fisher.test", "is.leaf", "order.dendrogram")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
Paneldata.formula: no visible global function definition for
  'model.frame'
Paneldata.formula: no visible global function definition for
  'model.matrix'
Paneldata.formula: no visible global function definition for
  'model.response'
summary.Paneldata: no visible global function definition for 'coef'
summary.Paneldata: no visible global function definition for 'pt'
Undefined global functions or variables:
  coef model.frame model.matrix model.response pt
Consider adding
  importFrom("stats", "coef", "model.frame", "model.matrix",
             "model.response", "pt")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/panelWranglR.Rcheck/00install.out' for details.
parallelSVM.default: no visible binding for global variable 'na.omit'
parallelSVM.formula: no visible binding for global variable 'na.omit'
predict.parallelSVM: no visible binding for global variable 'predict'
Undefined global functions or variables:
  na.omit predict
Consider adding
  importFrom("stats", "na.omit", "predict")
to your NAMESPACE file.
Running examples in 'paramhetero-Ex.R' failed
The error most likely occurred in:

> ### Name: residual_plots
> ### Title: Plot residuals.
> ### Aliases: residual_plots residual_density residual_boxplot
> 
> ### ** Examples
> 
>  states = as.data.frame(state.x77)
> 
>  m1 = lm(`Life Exp` ~ Income + Illiteracy, data=states,
+          subset=state.region=='Northeast')
>  m2 = lm(`Life Exp` ~ Income + Illiteracy, data=states,
+          subset=state.region=='South')
>  m3 = lm(`Life Exp` ~ Income + Illiteracy, data=states,
+          subset=state.region=='North Central')
>  m4 = lm(`Life Exp` ~ Income + Illiteracy, data=states,
+          subset=state.region=='West')
> 
>  mList = list(m1, m2, m3, m4)
> 
>  residual_plots(model_list = mList, thm=ggplot2::theme_minimal())
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: residual_plots ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Simulating-Power.Rmd' using rmarkdown
This is lavaan 0.6-7
lavaan is BETA software! Please report any bugs.
Quitting from lines 26-34 (Simulating-Power.Rmd) 
Error: processing vignette 'Simulating-Power.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Simulating-Power.Rmd'

SUMMARY: processing the following file failed:
  'Simulating-Power.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ParBayesianOptimization.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/parboost.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/parcats.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'grid'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
.formula.make: no visible global function definition for 'formula'
regress: no visible global function definition for 'lm'
regress: no visible global function definition for 'model.matrix'
Undefined global functions or variables:
  formula lm model.matrix
Consider adding
  importFrom("stats", "formula", "lm", "model.matrix")
to your NAMESPACE file.
Package vignette with placeholder title 'Vignette Title':
  'introduction-to-parcoords-.Rmd'
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/parlitools.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/parsemsf.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/parSim.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/parsnip.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'nnet'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
fitOR: no visible global function definition for 'multinom'
fitOR: no visible global function definition for 'formula'
fitOR: no visible global function definition for 'coef'
fitOR: no visible global function definition for 'optim'
reportOR: no visible global function definition for 'qnorm'
reportOR: no visible global function definition for 'pchisq'
reportOR: no visible global function definition for 'coef'
simData: no visible global function definition for 'rnorm'
simData: no visible global function definition for 'runif'
Undefined global functions or variables:
  coef formula multinom optim pchisq qnorm rnorm runif
Consider adding
  importFrom("stats", "coef", "formula", "optim", "pchisq", "qnorm",
             "rnorm", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/particles.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
partitionMap: no visible global function definition for 'predict'
partitionMap: no visible global function definition for 'rnorm'
partitionMap: no visible binding for global variable 'sd'
partitionMap: no visible global function definition for 'sd'
partitionMap: no visible global function definition for 'quantile'
Undefined global functions or variables:
  predict quantile rnorm sd
Consider adding
  importFrom("stats", "predict", "quantile", "rnorm", "sd")
to your NAMESPACE file.
Running examples in 'partition-Ex.R' failed
The error most likely occurred in:

> ### Name: as_partitioner
> ### Title: Create a partitioner
> ### Aliases: as_partitioner
> 
> ### ** Examples
> 
> 
> as_partitioner(
+   direct = direct_distance_pearson,
+   measure = measure_icc,
+   reduce = reduce_scaled_mean
+ )
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: <Anonymous> ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'extending-partition.Rmd' using rmarkdown
Quitting from lines 32-40 (extending-partition.Rmd) 
Error: processing vignette 'extending-partition.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'extending-partition.Rmd'

--- re-building 'introduction-to-partition.Rmd' using rmarkdown
Quitting from lines 63-74 (introduction-to-partition.Rmd) 
Error: processing vignette 'introduction-to-partition.Rmd' failed with diagnostics:
`map_dfc()` requires dplyr
--- failed re-building 'introduction-to-partition.Rmd'

SUMMARY: processing the following files failed:
  'extending-partition.Rmd' 'introduction-to-partition.Rmd'

Error: Vignette re-building failed.
Execution halted
Warning: no function found corresponding to methods exports from 'partsm' for: 'show'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
parviol: no visible global function definition for 'plot.new'
parviol: no visible global function definition for 'plot.window'
parviol: no visible global function definition for 'title'
parviol: no visible global function definition for 'lines'
parviol: no visible global function definition for 'text'
parviol: no visible global function definition for 'rgb'
selecto: no visible global function definition for 'lines'
Undefined global functions or variables:
  lines plot.new plot.window rgb text title
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "lines", "plot.new", "plot.window", "text",
             "title")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PAsso.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'passport.Rmd' using rmarkdown
Quitting from lines 32-39 (passport.Rmd) 
Error: processing vignette 'passport.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'passport.Rmd'

SUMMARY: processing the following file failed:
  'passport.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/passt.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'ape' 'caper'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
conch: no visible global function definition for 'read.tree'
conch: no visible global function definition for 'reorder'
conch: no visible global function definition for 'read.nexus'
conch: no visible global function definition for '.compressTipLabel'
conch: no visible global function definition for 'drop.tip'
conch: no visible global function definition for 'extract.clade'
conch: no visible global function definition for 'which.edge'
conch: no visible global function definition for 'write.tree'
pastis_main: no visible global function definition for 'combn'
read_input: no visible global function definition for 'read.tree'
read_input: no visible global function definition for 'reorder'
read_input: no visible global function definition for 'read.csv'
read_input: no visible global function definition for 'read.dna'
Undefined global functions or variables:
  .compressTipLabel combn drop.tip extract.clade read.csv read.dna
  read.nexus read.tree reorder which.edge write.tree
Consider adding
  importFrom("stats", "reorder")
  importFrom("utils", "combn", "read.csv")
to your NAMESPACE file.
'library' or 'require' calls to packages already attached by Depends:
  'MASS' 'e1071'
  Please remove these calls from your code.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pathfindR.Rcheck/00install.out' for details.
Package vignette with placeholder title 'Vignette Title':
  'pathlibr.Rmd'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PathSelectMP.Rcheck/00install.out' for details.
Running examples in 'paths-Ex.R' failed
The error most likely occurred in:

> ### Name: paths
> ### Title: Causal Paths Analysis
> ### Aliases: paths print.paths
> 
> ### ** Examples
> 
> data(tatar)
> 
> m1 <- c("trust_g1", "victim_g1", "fear_g1")
> m2 <- c("trust_g2", "victim_g2", "fear_g2")
> m3 <- c("trust_g3", "victim_g3", "fear_g3")
> mediators <- list(m1, m2, m3)
> 
> formula_m0 <- annex ~ kulak + prosoviet_pre + religiosity_pre + land_pre +
+   orchard_pre + animals_pre + carriage_pre + otherprop_pre + violence
> formula_m1 <- update(formula_m0,    ~ . + trust_g1 + victim_g1 + fear_g1)
> formula_m2 <- update(formula_m1,    ~ . + trust_g2 + victim_g2 + fear_g2)
> formula_m3 <- update(formula_m2,    ~ . + trust_g3 + victim_g3 + fear_g3)
> formula_ps <- violence ~ kulak + prosoviet_pre + religiosity_pre +
+   land_pre + orchard_pre + animals_pre + carriage_pre + otherprop_pre
> 
> ####################################################
> # Causal Paths Analysis using GLM
> ####################################################
> 
> # outcome models
> glm_m0 <- glm(formula_m0, family = binomial("logit"), data = tatar)
> glm_m1 <- glm(formula_m1, family = binomial("logit"), data = tatar)
> glm_m2 <- glm(formula_m2, family = binomial("logit"), data = tatar)
> glm_m3 <- glm(formula_m3, family = binomial("logit"), data = tatar)
> glm_ymodels <- list(glm_m0, glm_m1, glm_m2, glm_m3)
> 
> # propensity score model
> glm_ps <- glm(formula_ps, family = binomial("logit"), data = tatar)
> 
> # causal paths analysis using glm
> # note: For illustration purposes only a small number of bootstrap replicates are used
> paths_glm <- paths(a = "violence", y = "annex", m = mediators,
+   glm_ymodels, ps_model = glm_ps, data = tatar, nboot = 3)
....Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: paths ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Checking should be performed on sources prepared by 'R CMD build'.
Running examples in 'patrick-Ex.R' failed
The error most likely occurred in:

> ### Name: with_parameters_test_that
> ### Title: Execute a test with parameters.
> ### Aliases: with_parameters_test_that cases
> 
> ### ** Examples
> 
> with_parameters_test_that("trigonometric functions match identities", {
+     testthat::expect_equal(expr, numeric_value)
+   },
+   expr = c(sin(pi / 4), cos(pi / 4), tan(pi / 4)),
+   numeric_value = c(1 / sqrt(2), 1 / sqrt(2), 1)
+ )
> 
> # Run the same test with the cases() constructor
> with_parameters_test_that("trigonometric functions match identities", {
+     testthat::expect_equal(expr, numeric_value)
+   },
+   cases(
+     sin = list(expr = sin(pi / 4), numeric_value = 1 / sqrt(2)),
+     cos = list(expr = cos(pi / 4), numeric_value = 1 / sqrt(2)),
+     tan = list(expr = tan(pi / 4), numeric_value = 1)
+   )
+ )
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: with_parameters_test_that ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # Copyright 2018 Google LLC
  > #
  > # Licensed under the Apache License, Version 2.0 (the "License");
  > # you may not use this file except in compliance with the License.
  > # You may obtain a copy of the License at
  > #
  > #     http://www.apache.org/licenses/LICENSE-2.0
  > #
  > # Unless required by applicable law or agreed to in writing, software
  > # distributed under the License is distributed on an "AS IS" BASIS,
  > # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  > # See the License for the specific language governing permissions and
  > # limitations under the License.
  > 
  > library(patrick)
  > library(testthat)
  > 
  > test_check("patrick")
  -- 1. Error: (unknown) (@test-with_parameters.R#34)  ---------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. patrick::with_parameters_test_that(...)
   2. patrick::cases(...)
   3. dplyr::bind_rows
   4. base::getExportedValue(pkg, name)
   5. base::asNamespace(ns)
   6. base::getNamespace(ns)
   7. base::loadNamespace(name)
   8. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 4 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test-with_parameters.R#34) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/patternize.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/patternplot.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PAutilities.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
add_noise: no visible global function definition for 'rnorm'
estimate_risk_dream6 : <anonymous>: no visible global function
  definition for 'var'
generate_sample: no visible global function definition for 'rnorm'
generate_sample: no visible global function definition for 'runif'
sample_function: no visible global function definition for 'runif'
sample_function : <anonymous>: no visible global function definition
  for 'var'
sample_function_multi_mod_weight: no visible global function definition
  for 'runif'
sample_function_multi_mod_weight : <anonymous>: no visible global
  function definition for 'var'
sample_function_single_mod: no visible global function definition for
  'runif'
Undefined global functions or variables:
  rnorm runif var
Consider adding
  importFrom("stats", "rnorm", "runif", "var")
to your NAMESPACE file.
Warning: no function found corresponding to methods exports from 'PAWL' for: 'show'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Warning: no function found corresponding to methods exports from 'PAWL' for: 'show'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'library' or 'require' calls to packages already attached by Depends:
  'foreach' 'ggplot2' 'reshape'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'foreach' 'ggplot2' 'methods' 'mvtnorm' 'reshape'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Not exits: C:/Program Files/netCDF 4.3.2
Not exits: C:/Program Files/netCDF 4.3.2/bin
Not exits: C:/Program Files/netCDF 4.3.2/deps/x64/bin
Not exits: C:/Program Files/netCDF 4.3.2/deps/x64/bin/msvcp100.dll
Not exits: C:/Program Files/netCDF 4.3.2/deps/x64/bin/msvcr100.dll
Not exits: C:/Program Files/netCDF 4.3.2/deps/x64/bin/zlib.dll
Not exits: C:/Program Files/netCDF 4.3.2/deps/x64/bin/hdf5.dll
Not exits: C:/Program Files/netCDF 4.3.2/deps/x64/bin/hdf5_hl.dll
Not exits: C:/Program Files/netCDF 4.3.2/bin/netcdf.dll
===== WARNING =====
- netCDF 4.3.2 may not install at compile time.
- Environment variables may not be correct at compile and run time.
- pbdNCDF4 binary may not link with netCDF.
- Please consider to rebuild from source.
===================
get.sysenv: no visible global function definition for 'shortPathName'
Undefined global functions or variables:
  shortPathName
Consider adding
  importFrom("utils", "shortPathName")
to your NAMESPACE file.
Found the following significant warnings:
  putty/windows/winstore.c:665:38: warning: passing argument 6 of 'RegQueryValueExA' from incompatible pointer type [-Wincompatible-pointer-types]
  putty/windows/winstore.c:673:42: warning: passing argument 6 of 'RegQueryValueExA' from incompatible pointer type [-Wincompatible-pointer-types]
See 'd:/Rcompile/CRANpkg/local/4.0/pbdRPC.Rcheck/00install.out' for details.
installed size is 10.5Mb
  sub-directories of 1Mb or more:
    lib    5.5Mb
    libs   4.7Mb
Found the following sources/headers with CR or CRLF line endings:
  src/zmqsrc/src/condition_variable.hpp
Some Unix compilers require LF line endings.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pbixr.Rcheck/00install.out' for details.
'library' or 'require' call to 'foreach' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
dotplot.pbo: no visible global function definition for 'reorder'
pbo: no visible global function definition for '%dopar%'
pbo: no visible global function definition for 'foreach'
pbo: no visible global function definition for 'lm'
xyplot.pbo: no visible global function definition for 'ecdf'
xyplot.pbo: no visible global function definition for 'doubleYScale'
xyplot.pbo: no visible global function definition for 'reorder'
Undefined global functions or variables:
  %dopar% doubleYScale ecdf foreach lm reorder
Consider adding
  importFrom("stats", "ecdf", "lm", "reorder")
to your NAMESPACE file.
a_get_native: no visible global function definition for 'par'
a_get_relative: no visible global function definition for 'par'
brackets: no visible global function definition for 'par'
brackets: no visible global function definition for 'dist'
brackets: no visible global function definition for 'lines'
Undefined global functions or variables:
  dist lines par
Consider adding
  importFrom("graphics", "lines", "par")
  importFrom("stats", "dist")
to your NAMESPACE file.
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    data   2.7Mb
    doc    1.1Mb
    libs   1.9Mb
Malformed Description field: should contain one or more complete sentences.
draw.pcaBootPlot: no visible global function definition for 'grid'
draw.pcaBootPlot: no visible global function definition for 'points'
draw.pcaBootPlot: no visible global function definition for 'symbols'
draw.pcaBootPlot: no visible global function definition for 'legend'
pcaBootPlot: no visible global function definition for 'prcomp'
pcaBootPlot: no visible global function definition for 'cor'
pcaBootPlot: no visible global function definition for 'quantile'
pcaBootPlot: no visible global function definition for 'pdf'
pcaBootPlot: no visible global function definition for 'dev.off'
Undefined global functions or variables:
  cor dev.off grid legend pdf points prcomp quantile symbols
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("graphics", "grid", "legend", "points", "symbols")
  importFrom("stats", "cor", "prcomp", "quantile")
to your NAMESPACE file.
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    libs      2.3Mb
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    libs   6.7Mb
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
    libs   2.9Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pccc.Rcheck/00install.out' for details.
PCDReg.wf: no visible global function definition for 'optimize'
Undefined global functions or variables:
  optimize
Consider adding
  importFrom("stats", "optimize")
to your NAMESPACE file.
installed size is 17.8Mb
  sub-directories of 1Mb or more:
    doc    2.9Mb
    libs  14.3Mb
GNU make is a SystemRequirements.
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    libs   6.0Mb
Error(s) in re-building vignettes:
--- re-building 'PCMBase.Rmd' using rmarkdown
Failed with error:  'DLL 'dplyr' not found: maybe not installed for this architecture?'
Quitting from lines 37-53 (PCMBase.Rmd) 
Error: processing vignette 'PCMBase.Rmd' failed with diagnostics:
argument is not interpretable as logical
--- failed re-building 'PCMBase.Rmd'

--- re-building 'PCMCreateModel.Rmd' using rmarkdown
Failed with error:  'DLL 'dplyr' not found: maybe not installed for this architecture?'
Quitting from lines 37-54 (PCMCreateModel.Rmd) 
Error: processing vignette 'PCMCreateModel.Rmd' failed with diagnostics:
argument is not interpretable as logical
--- failed re-building 'PCMCreateModel.Rmd'

--- re-building 'PCMParam.Rmd' using rmarkdown
--- finished re-building 'PCMParam.Rmd'

--- re-building 'PCMTracePruning.Rmd' using rmarkdown
Failed with error:  'DLL 'dplyr' not found: maybe not installed for this architecture?'
Quitting from lines 37-59 (PCMTracePruning.Rmd) 
Error: processing vignette 'PCMTracePruning.Rmd' failed with diagnostics:
argument is not interpretable as logical
--- failed re-building 'PCMTracePruning.Rmd'

SUMMARY: processing the following files failed:
  'PCMBase.Rmd' 'PCMCreateModel.Rmd' 'PCMTracePruning.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PCPS.Rcheck/00install.out' for details.
PdofCSGt.bootstrap5: no visible global function definition for 'rnorm'
PdofCSGt.bootstrap5: no visible global function definition for 'rt'
PdofCSt.T1or2: no visible global function definition for 'combn'
PofCSGt: no visible global function definition for 'combn'
PofCSLt.bootstrap5: no visible global function definition for 'rnorm'
PofCSLt.bootstrap5: no visible global function definition for 'rt'
PofCSt: no visible global function definition for 'pnorm'
tindep: no visible binding for global variable 'var'
tindep: no visible global function definition for 'pt'
Undefined global functions or variables:
  combn pnorm pt rnorm rt var
Consider adding
  importFrom("stats", "pnorm", "pt", "rnorm", "rt", "var")
  importFrom("utils", "combn")
to your NAMESPACE file.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc   4.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pcts.Rcheck/00install.out' for details.
Running examples in 'pder-Ex.R' failed
The error most likely occurred in:

> ### Name: GiantsShoulders
> ### Title: Impact of Institutions on Cumulative Research
> ### Aliases: GiantsShoulders
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> #### Example 8-6
> 
> ## ------------------------------------------------------------------------
> data("GiantsShoulders", package = "pder")
> head(GiantsShoulders)
  pair article brc pubyear brcyear year citations
1  184    1184 yes    1983    1994 1983         0
2  184    1184 yes    1983    1994 1984        31
3  184    1184 yes    1983    1994 1985        89
4  184    1184 yes    1983    1994 1986       105
5  184    1184 yes    1983    1994 1987        84
6  184    1184 yes    1983    1994 1988        75
> 
> ## ------------------------------------------------------------------------
> library("dplyr")
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
installed size is 25.8Mb
  sub-directories of 1Mb or more:
    libs   13.8Mb
    share  11.9Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pdi.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
pdist: no visible global function definition for 'dist'
pdist: no visible global function definition for 'new'
Undefined global functions or variables:
  dist new
Consider adding
  importFrom("methods", "new")
  importFrom("stats", "dist")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Malformed Description field: should contain one or more complete sentences.
band.chol.cv: no visible global function definition for 'cov'
pdsoft.cv: no visible global function definition for 'cov'
Undefined global functions or variables:
  cov
Consider adding
  importFrom("stats", "cov")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'pdxTrees-vignette.Rmd' using rmarkdown
Quitting from lines 29-40 (pdxTrees-vignette.Rmd) 
Error: processing vignette 'pdxTrees-vignette.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'pdxTrees-vignette.Rmd'

SUMMARY: processing the following file failed:
  'pdxTrees-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Running 'script.R' [1s]
  Running 'testthat.R' [2s]
Running the tests in 'tests/script.R' failed.
Complete output:
  > ## I initially tried writing these tests using testthat, but I got
  > ## errors when using the system() and system2() functions (bug in
  > ## testthat).
  > PeakError_compute.R <- system.file(
  +   "exampleData", "PeakError_compute.R",
  +   mustWork=TRUE,
  +   package="PeakError")
  > Rscript <- R.home(file.path("bin", "Rscript"))
  > exampleData <- system.file("exampleData", package="PeakError", mustWork=TRUE)
  > peaks.bed <- file.path(exampleData, "peaks.bed")
  > labels.bed <- file.path(exampleData, "labels.bed")
  > overlapping.bed <- file.path(exampleData, "overlapping_peaks.bed")
  > 
  > ##test_that("PeakError_compute.R correct", {
  > out.file <- tempfile()
  > cmd <- paste(Rscript, PeakError_compute.R, peaks.bed, labels.bed, ">", out.file)
  > status <- system(cmd)
  Error: Usage: compute_error.R peaks.bed labels.bed > errors.bed
  Execution halted
  > errors <- read.table(out.file, sep="\t", header=TRUE)
  Error in file(file, "rt") : cannot open the connection
  Calls: read.table -> file
  In addition: Warning message:
  In file(file, "rt") :
    cannot open file 'D:\temp\Rtmp4E1c3P\file141d017454da': No such file or directory
  Execution halted
Running 'script.R' [1s]
  Running 'testthat.R' [3s]
Running the tests in 'tests/script.R' failed.
Complete output:
  > ## I initially tried writing these tests using testthat, but I got
  > ## errors when using the system() and system2() functions (bug in
  > ## testthat).
  > PeakError_compute.R <- system.file(
  +   "exampleData", "PeakError_compute.R",
  +   mustWork=TRUE,
  +   package="PeakError")
  > Rscript <- R.home(file.path("bin", "Rscript"))
  > exampleData <- system.file("exampleData", package="PeakError", mustWork=TRUE)
  > peaks.bed <- file.path(exampleData, "peaks.bed")
  > labels.bed <- file.path(exampleData, "labels.bed")
  > overlapping.bed <- file.path(exampleData, "overlapping_peaks.bed")
  > 
  > ##test_that("PeakError_compute.R correct", {
  > out.file <- tempfile()
  > cmd <- paste(Rscript, PeakError_compute.R, peaks.bed, labels.bed, ">", out.file)
  > status <- system(cmd)
  Error: Usage: compute_error.R peaks.bed labels.bed > errors.bed
  Execution halted
  > errors <- read.table(out.file, sep="\t", header=TRUE)
  Error in file(file, "rt") : cannot open the connection
  Calls: read.table -> file
  In addition: Warning message:
  In file(file, "rt") :
    cannot open file 'D:\temp\RtmpC6mCaz\file609850c34bb2': No such file or directory
  Execution halted
Package vignette with placeholder title 'Vignette Title':
  'peakPick-vignette.Rmd'
peacf: no visible global function definition for 'is.ts'
peacf: no visible global function definition for 'cycle'
peacf: no visible global function definition for 'ts.intersect'
peacf: no visible global function definition for 'lag'
peacf: no visible global function definition for 'ts'
peacf: no visible global function definition for 'pchisq'
peacf.plot: no visible global function definition for 'segments'
peacf.plot: no visible global function definition for 'title'
pear: no visible global function definition for 'cycle'
pear: no visible global function definition for 'pchisq'
peboxplot: no visible global function definition for 'cycle'
peboxplot: no visible global function definition for 'boxplot'
peboxplot: no visible global function definition for 'title'
peplot: no visible global function definition for 'par'
peplot: no visible global function definition for 'cycle'
peplot: no visible global function definition for 'identify'
peplot: no visible global function definition for 'mtext'
Undefined global functions or variables:
  boxplot cycle identify is.ts lag mtext par pchisq segments title ts
  ts.intersect
Consider adding
  importFrom("graphics", "boxplot", "identify", "mtext", "par",
             "segments", "title")
  importFrom("stats", "cycle", "is.ts", "lag", "pchisq", "ts",
             "ts.intersect")
to your NAMESPACE file.
The following files should probably not be installed:
  'addendum.tex', 'slplot.tex', 'table1.tex', 'table3.tex'

Consider the use of a .Rinstignore file: see 'Writing R Extensions',
or move the vignette sources from 'inst/doc' to 'vignettes'.
PearsonICA: no visible global function definition for 'rnorm'
PearsonICAdemo: no visible global function definition for 'rnorm'
PearsonICAdemo: no visible global function definition for 'dev.new'
PearsonICAdemo: no visible global function definition for 'par'
PearsonICAdemo: no visible global function definition for 'axis'
PearsonICAdemo: no visible global function definition for 'title'
PearsonICAdemo: no visible global function definition for 'lines'
Undefined global functions or variables:
  axis dev.new lines par rnorm title
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "axis", "lines", "par", "title")
  importFrom("stats", "rnorm")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
'LinkingTo' for 'ggplot2' is unused as it has no 'include' directory
Packages in Depends field not imported from:
  'Rcpp' 'RcppArmadillo' 'ggplot2'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
AssoTestProc: no visible global function definition for 'rbinom'
AssoTestProc: no visible global function definition for 'princomp'
AssoTestProc: no visible global function definition for 'loadings'
AssoTestProc: no visible global function definition for 'lm'
CNVtypeAnay: no visible global function definition for 'cov'
ClusProc: no visible global function definition for 'princomp'
ClusProc: no visible global function definition for 'prcomp'
ClusProc0: no visible global function definition for 'kmeans'
ClusProc0: no visible global function definition for 'cov'
Inde: no visible global function definition for 'lm'
Inde: no visible global function definition for 'var'
STE: no visible global function definition for 'pchisq'
STIM: no visible global function definition for 'cor'
STIM: no visible global function definition for 'pchisq'
plot.clust: no visible global function definition for 'princomp'
plot.clust: no visible global function definition for 'loadings'
plot.clust: no visible global function definition for 'qplot'
plot.clust: no visible global function definition for 'geom_histogram'
plot.clust: no visible global function definition for 'aes_string'
plot.clust: no visible global function definition for 'barplot'
plot.clust: no visible global function definition for 'title'
plot.clust: no visible global function definition for 'mtext'
plot.clust: no visible global function definition for 'text'
Undefined global functions or variables:
  aes_string barplot cor cov geom_histogram kmeans lm loadings mtext
  pchisq prcomp princomp qplot rbinom text title var
Consider adding
  importFrom("graphics", "barplot", "mtext", "text", "title")
  importFrom("stats", "cor", "cov", "kmeans", "lm", "loadings", "pchisq",
             "prcomp", "princomp", "rbinom", "var")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'reshape'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
blup: no visible global function definition for 'model.matrix'
blup: no visible global function definition for 'model.frame'
blup: no visible global function definition for 'read.table'
calcG: no visible global function definition for 'as'
gblup: no visible global function definition for 'model.matrix'
gblup: no visible global function definition for 'model.frame'
Undefined global functions or variables:
  as model.frame model.matrix read.table
Consider adding
  importFrom("methods", "as")
  importFrom("stats", "model.frame", "model.matrix")
  importFrom("utils", "read.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pegas.Rcheck/00install.out' for details.
PEMM_fun : find.lambda: no visible global function definition for
  'optimize'
PEMM_fun: no visible global function definition for 'cov'
Undefined global functions or variables:
  cov optimize
Consider adding
  importFrom("stats", "cov", "optimize")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pems.utils.Rcheck/00install.out' for details.
Running examples in 'penDvine-Ex.R' failed
The error most likely occurred in:

> ### Name: penDvine-package
> ### Title: The package 'penDvine' offers routines for estimating densities
> ###   and copula distribution of D-vines.
> ### Aliases: penDvine-package
> 
> ### ** Examples
> 
> #This examples describes the estimation of a D-vine to winddata,
> #available in this package. After the margins are prepared, we estimate a
> #D-vine using B-splines with 9 (K+1) marginal knots and penalizing second (m=2)
> #order differences (pen=1) of the basis coefficients.
> 
> data(Winddata)
> ex.data<-Winddata[c(1:100),c(1:4)] #examplary subdata for fast calculation
> wind.example<-Dvine(ex.data,K=7,pen=1,lambda=100,order.Dvine=FALSE,base="B-spline",m=2,cores=2)
>   
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
Error: connections left open:
	<-CRANwin.fb05.statistik.uni-dortmund.de:11151 (sockconn)
	<-CRANwin.fb05.statistik.uni-dortmund.de:11151 (sockconn)
Execution halted
'library' or 'require' calls in package code:
  'CoxBoost' 'codetools' 'locfit' 'penalized'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
complexity.LASSO: no visible global function definition for 'profL1'
complexity.ipec.CoxBoost: no visible global function definition for
  'CoxBoost'
complexity.ipec.CoxBoost: no visible global function definition for
  'locfit'
complexity.mincv.CoxBoost: no visible global function definition for
  'cv.CoxBoost'
complexity.ripec.CoxBoost: no visible global function definition for
  'CoxBoost'
complexity.ripec.CoxBoost: no visible global function definition for
  'locfit'
extract: no visible global function definition for 'findGlobals'
fit.CoxBoost: no visible global function definition for 'CoxBoost'
fit.LASSO: no visible global function definition for 'penalized'
Undefined global functions or variables:
  CoxBoost cv.CoxBoost findGlobals locfit penalized profL1
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/peptider.Rcheck/00install.out' for details.
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    libs        2.0Mb
    xvg-files   3.2Mb
Error(s) in re-building vignettes:
--- re-building 'perc_calculator_example.Rmd' using rmarkdown
Quitting from lines 19-22 (perc_calculator_example.Rmd) 
Error: processing vignette 'perc_calculator_example.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'perc_calculator_example.Rmd'

--- re-building 'perc_warning_example.Rmd' using rmarkdown

Please cite as: 

Cimentada, (2019). perccalc: An R package for estimating percentiles from categorical variables. Journal of Open Source Software, 4(44), 1796, https://doi.org/10.21105/joss.01796
Quitting from lines 17-20 (perc_warning_example.Rmd) 
Error: processing vignette 'perc_warning_example.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'perc_warning_example.Rmd'

--- re-building 'pisa_example.Rmd' using rmarkdown

Please cite as: 

Cimentada, (2019). perccalc: An R package for estimating percentiles from categorical variables. Journal of Open Source Software, 4(44), 1796, https://doi.org/10.21105/joss.01796
Quitting from lines 25-29 (pisa_example.Rmd) 
Error: processing vignette 'pisa_example.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'pisa_example.Rmd'

SUMMARY: processing the following files failed:
  'perc_calculator_example.Rmd' 'perc_warning_example.Rmd'
  'pisa_example.Rmd'

Error: Vignette re-building failed.
Execution halted
performance.curves.plot: no visible global function definition for
  'postscript'
performance.curves.plot: no visible global function definition for
  'axis'
performance.curves.plot: no visible global function definition for
  'lines'
performance.curves.plot: no visible global function definition for
  'legend'
performance.curves.plot: no visible global function definition for
  'grid'
performance.curves.plot: no visible global function definition for
  'dev.off'
precision.recall.curves.plot: no visible global function definition for
  'postscript'
precision.recall.curves.plot: no visible global function definition for
  'axis'
precision.recall.curves.plot: no visible global function definition for
  'lines'
precision.recall.curves.plot: no visible global function definition for
  'legend'
precision.recall.curves.plot: no visible global function definition for
  'grid'
precision.recall.curves.plot: no visible global function definition for
  'dev.off'
Undefined global functions or variables:
  axis dev.off grid legend lines postscript
Consider adding
  importFrom("grDevices", "dev.off", "postscript")
  importFrom("graphics", "axis", "grid", "legend", "lines")
to your NAMESPACE file.
Running examples in 'performance-Ex.R' failed
The error most likely occurred in:

> ### Name: binned_residuals
> ### Title: Binned residuals for logistic regression
> ### Aliases: binned_residuals
> 
> ### ** Examples
> 
> model <- glm(vs ~ wt + mpg, data = mtcars, family = "binomial")
> binned_residuals(model)
Warning: Probably bad model fit. Only about 50% of the residuals are inside the error bounds.
Error in print.binned_residuals(x) : 
  Package 'see' required to plot binned residuals. Please install it.
Calls: <Anonymous> -> print.binned_residuals
Execution halted
Package suggested but not available for checking: 'dendextendRcpp'
permalgorithm: no visible global function definition for 'is'
Undefined global functions or variables:
  is
Consider adding
  importFrom("methods", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Malformed Description field: should contain one or more complete sentences.
ksample.pclt: no visible global function definition for 'pchisq'
pCI: no visible global function definition for 'qbeta'
permKS.formula: no visible global function definition for 'terms'
permTREND.default: no visible global function definition for 'cor'
permTREND.formula: no visible global function definition for 'terms'
permTS.formula: no visible global function definition for 'terms'
trend.pclt: no visible global function definition for 'pnorm'
twosample.pclt: no visible global function definition for 'pnorm'
twosample.pclt: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  cor pchisq pnorm qbeta terms
Consider adding
  importFrom("stats", "cor", "pchisq", "pnorm", "qbeta", "terms")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/permubiome.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'permutes.Rmd' using rmarkdown
Quitting from lines 169-183 (permutes.Rmd) 
Error: processing vignette 'permutes.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'permutes.Rmd'

SUMMARY: processing the following file failed:
  'permutes.Rmd'

Error: Vignette re-building failed.
Execution halted
hasMethod: no visible global function definition for 'getS3method'
Undefined global functions or variables:
  getS3method
Consider adding
  importFrom("utils", "getS3method")
to your NAMESPACE file.
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    R      4.4Mb
    data   3.1Mb
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/personalized.Rcheck/00install.out' for details.
Running 'testthat.R' [9s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(peRspective)
  > 
  > test_check("peRspective")
  -- 1. Error: (unknown) (@test-prsp-stream.R#90)  -------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. tibble::tibble(...)
    9. dplyr::bind_rows(., .)
   10. base::getExportedValue(pkg, name)
   11. base::asNamespace(ns)
   12. base::getNamespace(ns)
   13. base::loadNamespace(name)
   14. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 4 | SKIPPED: 20 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test-prsp-stream.R#90) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/petrinetR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/petro.One.Rcheck/00install.out' for details.
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
pGLS: no visible global function definition for 'model.response'
pGLS: no visible global function definition for 'model.matrix'
pGLS: no visible global function definition for 'pt'
Undefined global functions or variables:
  model.matrix model.response pt
Consider adding
  importFrom("stats", "model.matrix", "model.response", "pt")
to your NAMESPACE file.
prepare_Rd: data_fs.Rd:11: Dropping empty section \source
prepare_Rd: var_fs.Rd:12-14: Dropping empty section \references
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc    1.1Mb
    libs   2.2Mb
Running 'testthat.R' [5s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(pharmaRTF)
  
  Attaching package: 'pharmaRTF'
  
  The following object is masked from 'package:graphics':
  
      text
  
  > library(assertthat)
  > library(huxtable)
  
  Attaching package: 'huxtable'
  
  The following objects are masked from 'package:pharmaRTF':
  
      align, align<-, bold, bold<-, font, font<-, font_size, font_size<-,
      header_rows, header_rows<-, italic, italic<-, set_align, set_bold,
      set_font, set_font_size, set_header_rows, set_italic
  
  > 
  > test_check("pharmaRTF")
  -- 1. Error: insert_buffer adds a blank column correctly (@test_helpers.r#42)  -
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. testthat::expect_true(...)
   4. dplyr::all_equal
   5. base::getExportedValue(pkg, name)
   6. base::asNamespace(ns)
   7. base::getNamespace(ns)
   8. base::loadNamespace(name)
   9. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 217 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: insert_buffer adds a blank column correctly (@test_helpers.r#42) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'advanced_usage.Rmd' using rmarkdown
Quitting from lines 13-20 (advanced_usage.Rmd) 
Error: processing vignette 'advanced_usage.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'advanced_usage.Rmd'

--- re-building 'huxtable_tips.Rmd' using rmarkdown
Quitting from lines 13-20 (huxtable_tips.Rmd) 
Error: processing vignette 'huxtable_tips.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'huxtable_tips.Rmd'

--- re-building 'pharmaRTF.Rmd' using rmarkdown
Quitting from lines 13-20 (pharmaRTF.Rmd) 
Error: processing vignette 'pharmaRTF.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'pharmaRTF.Rmd'

--- re-building 'tf_from_file.Rmd' using rmarkdown
Quitting from lines 13-21 (tf_from_file.Rmd) 
Error: processing vignette 'tf_from_file.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'tf_from_file.Rmd'

SUMMARY: processing the following files failed:
  'advanced_usage.Rmd' 'huxtable_tips.Rmd' 'pharmaRTF.Rmd'
  'tf_from_file.Rmd'

Error: Vignette re-building failed.
Execution halted
PharmPow_crossover: no visible global function definition for
  'read.table'
PharmPow_crossover: no visible global function definition for
  'write.csv'
PharmPow_crossover: no visible global function definition for 'pdf'
PharmPow_crossover: no visible global function definition for 'dev.off'
PharmPow_parallel: no visible global function definition for
  'read.table'
PharmPow_parallel: no visible global function definition for
  'write.csv'
PharmPow_parallel: no visible global function definition for 'pdf'
PharmPow_parallel: no visible global function definition for 'dev.off'
fig_PharmPow_crossover: no visible global function definition for
  'read.csv'
fig_PharmPow_parallel: no visible global function definition for
  'read.csv'
Undefined global functions or variables:
  dev.off pdf read.csv read.table write.csv
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("utils", "read.csv", "read.table", "write.csv")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/phase1PRMD.Rcheck/00install.out' for details.
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data       2.3Mb
    examples   2.6Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PHEindicatormethods.Rcheck/00install.out' for details.
fox: no visible binding for global variable 'sd'
fox: no visible global function definition for 'cor'
fox: no visible global function definition for 'interaction.plot'
fox: no visible global function definition for 'reorder'
kang: no visible global function definition for 'var'
kang: no visible binding for global variable 'sd'
kang: no visible global function definition for 'cor'
kang: no visible global function definition for 'interaction.plot'
kang: no visible global function definition for 'reorder'
nahu: no visible global function definition for 'interaction.plot'
nahu: no visible global function definition for 'reorder'
thsu: no visible global function definition for 'median'
thsu: no visible binding for global variable 'sd'
thsu: no visible global function definition for 'cor'
thsu: no visible global function definition for 'interaction.plot'
thsu: no visible global function definition for 'reorder'
Undefined global functions or variables:
  cor interaction.plot median reorder sd var
Consider adding
  importFrom("stats", "cor", "interaction.plot", "median", "reorder",
             "sd", "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/phenModel.Rcheck/00install.out' for details.
Running examples in 'phenocamapi-Ex.R' failed
The error most likely occurred in:

> ### Name: download_midday_images
> ### Title: Downloading the midday images for PhenoCam sites given a time
> ###   range
> ### Aliases: download_midday_images
> 
> ### ** Examples
> 
> 
> download_dir <- download_midday_images('dukehw',
+  y = 2018,
+  months = 2,
+  days=1,
+  download_dir= tempdir())
Warning in get_midday_list(site, direct = FALSE) :
  midday list file was not found on the Phenocam server!
Error in basename(filepaths) : a character vector argument expected
Calls: download_midday_images -> parse_phenocam_filenames -> gsub -> basename
Execution halted
Running 'testthat.R' [58s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(phenocamapi)
  Loading required package: data.table
  Loading required package: rjson
  Loading required package: RCurl
  > library(data.table)
  > 
  > test_check("phenocamapi")
  trying URL 'http://phenocam.sr.unh.edu/data/archive/dukehw/ROI/dukehw_DB_1000_3day.csv'
  Content type 'application/octet-stream' length 217933 bytes (212 KB)
  ==================================================
  downloaded 212 KB
  
  -- 1. Failure: test getting awb data (@testphenocamapi.R#42)  ------------------
  `wb` not equal to "LIKELY_NO".
  target is NULL, current is character
  
  == testthat results  ===========================================================
  [ OK: 5 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 1 ]
  1. Failure: test getting awb data (@testphenocamapi.R#42) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'getting_started_phenocam_api.Rmd' using rmarkdown
trying URL 'http://phenocam.sr.unh.edu/data/archive/dukehw/ROI/dukehw_DB_1000_3day.csv'
Content type 'application/octet-stream' length 217933 bytes (212 KB)
==================================================
downloaded 212 KB

trying URL 'http://phenocam.sr.unh.edu/data/archive/dukehw/2013/05/dukehw_2013_05_31_150331.jpg'
Content type 'image/jpeg' length 470270 bytes (459 KB)
==================================================
downloaded 459 KB

Quitting from lines 282-298 (getting_started_phenocam_api.Rmd) 
Error: processing vignette 'getting_started_phenocam_api.Rmd' failed with diagnostics:
a character vector argument expected
--- failed re-building 'getting_started_phenocam_api.Rmd'

--- re-building 'phenocam_data_fusion.Rmd' using rmarkdown
Loading required package: rjson
Loading required package: RCurl
trying URL 'http://phenocam.sr.unh.edu/data/archive/dukehw/ROI/dukehw_DB_1000_3day.csv'
Content type 'application/octet-stream' length 217933 bytes (212 KB)
==================================================
downloaded 212 KB

trying URL 'http://phenocam.sr.unh.edu/data/archive/oregonMP/ROI/oregonMP_EN_1000_3day.csv'
Content type 'application/octet-stream' length 282815 bytes (276 KB)
==================================================
downloaded 276 KB

--- finished re-building 'phenocam_data_fusion.Rmd'

SUMMARY: processing the following file failed:
  'getting_started_phenocam_api.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/phenofit.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/phenomap.Rcheck/00install.out' for details.
pheno.ddm: no visible global function definition for 'new'
pheno.flm.fit: no visible binding for global variable 'na.exclude'
pheno.flm.fit: no visible global function definition for 'terms'
pheno.flm.fit: no visible global function definition for 'residuals'
pheno.flm.fit: no visible global function definition for 'qt'
pheno.lad.fit: no visible binding for global variable 'na.exclude'
pheno.mlm.fit: no visible binding for global variable 'na.exclude'
pheno.mlm.fit: no visible global function definition for 'residuals'
Undefined global functions or variables:
  na.exclude new qt residuals terms
Consider adding
  importFrom("methods", "new")
  importFrom("stats", "na.exclude", "qt", "residuals", "terms")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Phenotype.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PhenotypeSimulator.Rcheck/00install.out' for details.
Running examples in 'philentropy-Ex.R' failed
The error most likely occurred in:

> ### Name: CE
> ### Title: Shannon's Conditional-Entropy H(X | Y)
> ### Aliases: CE
> 
> ### ** Examples
> 
>  
>  CE(1:10/sum(1:10),1:10/sum(1:10))
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: CE ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(philentropy)
  > 
  > test_check("philentropy")
  -- 1. Error: gJSD() checks for transposed matrix column sums > 1. (@test-Informa
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_equal(...)
    4. philentropy::gJSD(matrix(c(1, 1, 0, 0), nrow = 2))
    5. base::apply(x, 2, valid.distr)
    6. philentropy:::FUN(newX[, i], ...)
    7. base::sapply(...)
    8. base::lapply(X = X, FUN = FUN, ...)
    9. philentropy:::FUN(X[[i]], ...)
   10. dplyr::between
   11. base::getExportedValue(pkg, name)
   12. base::asNamespace(ns)
   13. base::getNamespace(ns)
   14. base::loadNamespace(name)
   15. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 157 | SKIPPED: 2 | WARNINGS: 1 | FAILED: 1 ]
  1. Error: gJSD() checks for transposed matrix column sums > 1. (@test-InformationTheory.R#58) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PHInfiniteEstimates.Rcheck/00install.out' for details.
Running examples in 'photobiologyFilters-Ex.R' failed
The error most likely occurred in:

> ### Name: acetate_filters
> ### Title: Spectral data for filters made from different materials
> ### Aliases: acetate_filters materials acrylic_filters
> ###   polycarbonate_filters plexiglas_filters polystyrene_filters
> ###   polyester_filters polyvynil_chloride_filters optical_glass_filters
> ###   plastic_film_filters plastic_films plastic_sheet_filters
> ###   plastic_sheets
> ### Keywords: datasets
> 
> ### ** Examples
> 
> acrylic_filters
[1] "Evonik_Cherry_3C01_GT"        "Evonik_Clear_0A000_XT"       
[3] "Evonik_Clear_0F00_GT"         "Evonik_Clear_2458_GT"        
[5] "Evonik_Clear_UV_100_0A570_GT" "Evonik_Orange_2C04_GT"       
[7] "Evonik_Sky_Blue_5C01_GT"      "Evonik_Solar_Clear_0Z023_GT" 
[9] "Evonik_Yellow_1C33_GT"       
> 
> # select filters made from acrylic
> filters.mspct[acrylic_filters]
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: <Anonymous> ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'user-guide.Rmd' using rmarkdown
Quitting from lines 130-131 (user-guide.Rmd) 
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'user-guide.Rmd'

SUMMARY: processing the following file failed:
  'user-guide.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'photobiologyInOut-Ex.R' failed
The error most likely occurred in:

> ### Name: colorSpec2mspct
> ### Title: Convert 'colorSpec::colorSpec' objects
> ### Aliases: colorSpec2mspct as.source_spct.colorSpec
> ###   as.source_mspct.colorSpec as.response_spct.colorSpec
> ###   as.response_mspct.colorSpec as.filter_spct.colorSpec
> ###   as.filter_mspct.colorSpec as.reflector_spct.colorSpec
> ###   as.reflector_mspct.colorSpec as.chroma_mspct.colorSpec colorSpec2spct
> ###   colorSpec2chroma_spct as.chroma_spct.colorSpec mspct2colorSpec
> ###   spct2colorSpec chroma_spct2colorSpec
> 
> ### ** Examples
> 
> # example run only if 'colorSpec' is available
> if (requireNamespace("colorSpec", quietly = TRUE)) {
+   library(colorSpec)
+   colorSpec2mspct(Fs.5nm)
+   colorSpec2spct(Fs.5nm)
+   colorSpec2mspct(C.5nm)
+   colorSpec2spct(C.5nm)
+ } 
This is colorSpec.  Version: 1.2-1.  Author: Glenn Davis [aut, cre].  Built: R 4.0.2; ; 2020-08-27 05:38:13 UTC; windows

Attaching package: 'colorSpec'

The following object is masked from 'package:photobiology':

    normalize

Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: colorSpec2spct ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'user-guide.Rmd' using rmarkdown
News at https://www.r4photobiology.info/

Attaching package: 'lubridate'

The following objects are masked from 'package:base':

    date, intersect, setdiff, union

Loading required package: ggplot2
This is colorSpec.  Version: 1.2-1.  Author: Glenn Davis [aut, cre].  Built: R 4.0.2; ; 2020-08-27
 05:38:13 UTC; windows

Attaching package: 'colorSpec'

The following object is masked from 'package:photobiology':

    normalize

Welcome to pavo 2! Take a look at the latest features (and update your bibliography) in our recent publication: Maia R., Gruson H., Endler J. A., White T. E. (2019) pavo 2: new tools for the spectral and spatial analysis of colour in R. Methods in Ecology and Evolution, 10, 1097-1107.
Read 3 items
Read 16 items
Quitting from lines 133-138 (user-guide.Rmd) 
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'user-guide.Rmd'

SUMMARY: processing the following file failed:
  'user-guide.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'photobiologyLamps-Ex.R' failed
The error most likely occurred in:

> ### Name: incandescent_lamps
> ### Title: Spectral data for Lamps of different types
> ### Aliases: incandescent_lamps types led_lamps mercury_lamps
> ###   multimetal_lamps sodium_lamps xenon_lamps
> ### Keywords: datasets
> 
> ### ** Examples
> 
> sodium_lamps
[1] "osram.super.vialox"
> multimetal_lamps
[1] "osram.hqit.400w"
> mercury_lamps
 [1] "airam.cf.15w.2700k"    "airam.spiraali"        "germicidal"           
 [4] "osram.36w.25"          "osram.l36w.840"        "philips.pls11w.827"   
 [7] "philips.tl01"          "philips.tl12"          "philips.tl12.mc"      
[10] "philips.tl5.35w.830he" "philips.tld.36w.18"    "philips.tld36w.15"    
[13] "philips.tld36w.18"     "philips.tld36w.83"     "philips.tld36w.865"   
[16] "philips.tld36w.89"     "philips.tld36w.92"     "philips.tll36w.950"   
[19] "qpanel.uva340"         "qpanel.uvb313"         "sylvania.215w.vho"    
> led_lamps
 [1] "airam.led.11w.4000k"             "airam.led.oiva.9w.3000k"        
 [3] "amaran.al.m9"                    "convoy.uv.flashlight"           
 [5] "cree.uv.flashlight"              "fluence.AnthoSpec"              
 [7] "fluence.PhysioSpecGreenhouse"    "osram.led.10w.2700k.classicstar"
 [9] "osram.led.8w.2700k"              "philips.led.t8.10w.840"         
[11] "sunwayfoto.fl96.3000k"           "sunwayfoto.fl96.5500k"          
[13] "toshiba.led.9.5w.2700k"          "v.light.led.2w.6000k"           
[15] "valoya.b50.ap67"                
> 
> # select lamps emitting in the amber, yellow, orange region
> lamps.mspct[sodium_lamps]
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: <Anonymous> ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'user-guide.Rmd' using rmarkdown
News at https://www.r4photobiology.info/
Quitting from lines 67-68 (user-guide.Rmd) 
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'user-guide.Rmd'

SUMMARY: processing the following file failed:
  'user-guide.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'photobiologyLEDs-Ex.R' failed
The error most likely occurred in:

> ### Name: leds.mspct
> ### Title: Spectral irradiance for diverse LEDs
> ### Aliases: leds.mspct
> ### Keywords: datasets
> 
> ### ** Examples
> 
> library(photobiology)
> library(ggspectra)
Loading required package: ggplot2
> 
> names(leds.mspct)
 [1] "BS436"           "CB30"            "LED405"          "LED740"         
 [5] "UV395"           "XSL365"          "XSL370"          "XSL375"         
 [9] "UVMAX340"        "UVMAX305"        "TY_UV310nm"      "white"          
[13] "Q36_4000K"       "G_P30R140A1_XT"  "weili430nm"      "weili540nm"     
[17] "weili665nm"      "weili740nm"      "HPR40E_48K30BG"  "NHXRGB090_R"    
[21] "NHXRGB090_G"     "NHXRGB090_B"     "NHXRGB090"       "B5_436_30D"     
[25] "FR_OLD"          "HLMB_CB30"       "HLMB_CD31_take2" "HLMP_CB31"      
[29] "HLMP_CM30"       "HLMP_CM31"       "HLMP_DJ32"       "HLMP_DL32"      
[33] "LED435_66_60"    "LED740_01AV"     "LY5436"          "QDDH66002"      
[37] "QDDH68002"       "QDDH70002"       "QDDH73502"       "LZ1_10UV00"     
[41] "LZ1_10UA00_U4"   "LZ1_10UA00_U8"   "LZ1_10DB00"      "LZ1_10R302"     
[45] "LZ4_10R208"      "NS6L183AT_H1"    "G_P3V140B1_G"    "G_P3V140B1_GT"  
[49] "G_P3V140A1_YG"   "G_P3V140A1_YG1"  "MTSM340UV_F5120"
> 
> leds.mspct$white
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: <Anonymous> ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'user-guide.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Quitting from lines 77-78 (user-guide.Rmd) 
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'user-guide.Rmd'

SUMMARY: processing the following file failed:
  'user-guide.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'user-guide.Rmd' using rmarkdown
Loading required package: photobiology
News at https://www.r4photobiology.info/
Loading required package: ggplot2
Loading required package: photobiologyWavebands
Quitting from lines 178-179 (user-guide.Rmd) 
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'user-guide.Rmd'

SUMMARY: processing the following file failed:
  'user-guide.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'photobiologySensors-Ex.R' failed
The error most likely occurred in:

> ### Name: uv_sensors
> ### Title: Sensors responsive to different wavebands
> ### Aliases: uv_sensors 'sensors by waveband' uvc_sensors uvb_sensors
> ###   erythemal_sensors uva_sensors par_sensors vis_sensors
> ###   photometric_sensors shortwave_sensors pyranometer_sensors red_sensors
> ###   far_red_sensors blue_sensors multichannel_sensors
> ### Keywords: datasets
> 
> ### ** Examples
> 
> uv_sensors
 [1] "SG01D_C"            "SG01D_B"            "SM60"              
 [4] "SKU430a"            "UVS_B"              "SG01D_A"           
 [7] "SKU421"             "SKU421a"            "UVS_A"             
[10] "UVS_E"              "E1c"                "SKU440a"           
[13] "SL_501_high_UVA"    "SL_501_low_UVA"     "SL_501_typical"    
[16] "BW_20"              "Berger_UV_Biometer" "SG01L"             
[19] "CUV_5"             
> uvc_sensors
[1] "SG01D_C"
> uvb_sensors
[1] "SG01D_B" "SM60"    "SKU430a" "UVS_B"  
> uva_sensors
[1] "SG01D_A" "SKU421"  "SKU421a" "UVS_A"  
> par_sensors
[1] "SKP215" "SKE510" "SKP210" "PQS1"   "LI_190" "BF5"   
> vis_sensors
[1] "SKL310" "LI_210"
> shortwave_sensors
[1] "SKS1110" "LI_200" 
> red_sensors
[1] "SKR110_R"
> far_red_sensors
[1] "SKR110_FR"
> blue_sensors
[1] "TOCON_blue4"
> multichannel_sensors
[1] "SKR110_R"  "SKR110_FR"
> 
> # select PAR sensors
> sensors.mspct[par_sensors]
$SKP215
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: <Anonymous> ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'user-guide.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
News at https://www.r4photobiology.info/
For news about 'photobiologySensors', please, see http://www.r4photobiology.info/
For on-line documentation see http://docs.r4photobiology.info/photobiologySensors/
Quitting from lines 86-87 (user-guide.Rmd) 
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'user-guide.Rmd'

SUMMARY: processing the following file failed:
  'user-guide.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'user-guide.Rmd' using rmarkdown
News at https://www.r4photobiology.info/

Attaching package: 'lubridate'

The following objects are masked from 'package:base':

    date, intersect, setdiff, union

Quitting from lines 57-58 (user-guide.Rmd) 
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'user-guide.Rmd'

SUMMARY: processing the following file failed:
  'user-guide.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'user-guide.Rmd' using rmarkdown
Quitting from lines 222-223 (user-guide.Rmd) 
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'user-guide.Rmd'

SUMMARY: processing the following file failed:
  'user-guide.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'photosynthesis-Ex.R' failed
The error most likely occurred in:

> ### Name: A_supply
> ### Title: CO2 supply and demand function (mol / m^2 s)
> ### Aliases: A_supply A_demand
> 
> ### ** Examples
> 
> bake_par <- make_bakepar()
> constants <- make_constants(use_tealeaves = FALSE)
> enviro_par <- make_enviropar(use_tealeaves = FALSE)
> leaf_par <- make_leafpar(use_tealeaves = FALSE)
> leaf_par <- bake(leaf_par, bake_par, constants)
> # Or bake with piping (need library(magrittr))
> # leaf_par %<>% bake(bake_par, constants)
> enviro_par$T_air <- leaf_par$T_leaf
> 
> pars <- c(leaf_par, enviro_par, constants)
> C_chl <- set_units(35, "Pa")
> 
> A_supply(C_chl, pars)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: A_supply ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'photosynthesis-introduction.Rmd' using rmarkdown
Quitting from lines 38-53 (photosynthesis-introduction.Rmd) 
Error: processing vignette 'photosynthesis-introduction.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'photosynthesis-introduction.Rmd'

SUMMARY: processing the following file failed:
  'photosynthesis-introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    libs   6.3Mb
Package suggested but not available for checking: 'OutbreakTools'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/phyext2.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/phylobase.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/phylocanvas.Rcheck/00install.out' for details.
Running examples in 'phylopath-Ex.R' failed
The error most likely occurred in:

> ### Name: DAG
> ### Title: Directed acyclic graphs (DAGs)
> ### Aliases: DAG
> 
> ### ** Examples
> 
>   # Use formula notation to create DAGs:
>   plot(DAG(A~B, B~C))
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: plot ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'binary_models.Rmd' using rmarkdown
Quitting from lines 51-70 (binary_models.Rmd) 
Error: processing vignette 'binary_models.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'binary_models.Rmd'

--- re-building 'intro_to_phylopath.Rmd' using rmarkdown
Quitting from lines 116-117 (intro_to_phylopath.Rmd) 
Error: processing vignette 'intro_to_phylopath.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'intro_to_phylopath.Rmd'

SUMMARY: processing the following files failed:
  'binary_models.Rmd' 'intro_to_phylopath.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/phylosignal.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/phyloTop.Rcheck/00install.out' for details.
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   3.3Mb
Error(s) in re-building vignettes:
--- re-building 'benchmarks.Rmd' using rmarkdown
--- finished re-building 'benchmarks.Rmd'

--- re-building 'pglmm.Rmd' using rmarkdown
--- finished re-building 'pglmm.Rmd'

--- re-building 'plot-re.Rmd' using rmarkdown
Quitting from lines 48-93 (plot-re.Rmd) 
Error: processing vignette 'plot-re.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'plot-re.Rmd'

SUMMARY: processing the following file failed:
  'plot-re.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Everest.Rmd' using rmarkdown
--- finished re-building 'Everest.Rmd'

--- re-building 'IdealWeightComparison.Rmd' using rmarkdown
Quitting from lines 16-43 (IdealWeightComparison.Rmd) 
Error: processing vignette 'IdealWeightComparison.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'IdealWeightComparison.Rmd'

--- re-building 'NeonatalVentilation.Rmd' using rmarkdown
Quitting from lines 21-31 (NeonatalVentilation.Rmd) 
Error: processing vignette 'NeonatalVentilation.Rmd' failed with diagnostics:
package or namespace load failed for 'childsds' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'NeonatalVentilation.Rmd'

SUMMARY: processing the following files failed:
  'IdealWeightComparison.Rmd' 'NeonatalVentilation.Rmd'

Error: Vignette re-building failed.
Execution halted
incident: no visible global function definition for 'splinefun'
incident: no visible global function definition for 'integrate'
phytoprod: no visible global function definition for 'approx'
phytoprod: no visible global function definition for 'splinefun'
phytoprod: no visible global function definition for 'integrate'
reflectance: no visible global function definition for 'approx'
Undefined global functions or variables:
  approx integrate splinefun
Consider adding
  importFrom("stats", "approx", "integrate", "splinefun")
to your NAMESPACE file.
Running examples in 'piecewiseSEM-Ex.R' failed
The error most likely occurred in:

> ### Name: plot.psem
> ### Title: Plotting of Piecewise Structural Equation Models
> ### Aliases: plot.psem
> 
> ### ** Examples
> 
> data(keeley)
> 
> mod <- psem(
+   lm(rich ~ cover, data=keeley),
+   lm(cover ~ firesev, data=keeley),
+   lm(firesev ~ age, data=keeley),
+   data = keeley
+ )
> 
> plot(mod)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: plot ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
File which contains pragma(s) suppressing diagnostics:
  'src/pijavski.cpp'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pingers.Rcheck/00install.out' for details.
Running examples in 'pinnacle.data-Ex.R' failed
The error most likely occurred in:

> ### Name: USA_Election_2016
> ### Title: USA_Election_2016
> ### Aliases: USA_Election_2016
> ### Keywords: datasets
> 
> ### ** Examples
> 
> if (require("odds.converter")) {
+ library(tidyverse)
+ # What is Hilary Clinton's the highest implied winning probability at Pinnacle?
+ 
+ USA_Election_2016[which.min(USA_Election_2016$MoneyUS1),"EnteredDateTime"]
+ odds.converter::odds.us2prob(min(USA_Election_2016$MoneyUS1))
+ }
Loading required package: odds.converter
Error: package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Error(s) in re-building vignettes:
--- re-building 'pinochet.Rmd' using rmarkdown
Quitting from lines 52-58 (pinochet.Rmd) 
Error: processing vignette 'pinochet.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'pinochet.Rmd'

SUMMARY: processing the following file failed:
  'pinochet.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Introduction.Rmd' using rmarkdown
Quitting from lines 119-141 (Introduction.Rmd) 
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Introduction.Rmd'

SUMMARY: processing the following file failed:
  'Introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
plot.pred.int: no visible global function definition for 'plot.default'
plot.pred.int: no visible global function definition for 'axis'
plot.pred.int: no visible global function definition for 'box'
plot.pred.int : cidist: no visible global function definition for
  'ecdf'
plot.pred.int : negcidist: no visible global function definition for
  'ecdf'
plot.pred.int : pi.col.fun: no visible global function definition for
  'gray'
plot.pred.int: no visible global function definition for 'segments'
plot.pred.int: no visible global function definition for 'points'
plot.pred.int: no visible global function definition for 'abline'
pred.int: no visible binding for global variable 'sd'
prop.test.mult: no visible global function definition for 'qnorm'
sim.basic: no visible global function definition for 'rbinom'
sim.basic: no visible global function definition for 'rnorm'
t.test.mult: no visible global function definition for 'qt'
Undefined global functions or variables:
  abline axis box ecdf gray plot.default points qnorm qt rbinom rnorm
  sd segments
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "abline", "axis", "box", "plot.default",
             "points", "segments")
  importFrom("stats", "ecdf", "qnorm", "qt", "rbinom", "rnorm", "sd")
to your NAMESPACE file.
Package suggested but not available for checking: 'ggsubplot'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pivmet.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pivottabler.Rcheck/00install.out' for details.
Running examples in 'pixiedust-Ex.R' failed
The error most likely occurred in:

> ### Name: as.data.frame.dust
> ### Title: Convert 'dust' Object to Data Frame
> ### Aliases: as.data.frame.dust as.data.frame.dust_list
> 
> ### ** Examples
> 
> fit <- lm(mpg ~ qsec + factor(am) + wt * factor(gear), data = mtcars)
> Dust <- dust(fit) %>%
+   sprinkle(cols = 2:4, round = 2) %>%
+   sprinkle(cols = 5, fn = quote(pvalString(value))) %>%
+   sprinkle(cols = 3, font_color = "#DA70D6") %>%
+   sprinkle_print_method("html")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: %>% ... loadNamespace -> namespaceImport -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'advancedMagic.Rmd' using rmarkdown
Quitting from lines 24-42 (advancedMagic.Rmd) 
Error: processing vignette 'advancedMagic.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'advancedMagic.Rmd'

--- re-building 'pixiedust.Rmd' using rmarkdown
Quitting from lines 35-36 (pixiedust.Rmd) 
Error: processing vignette 'pixiedust.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'pixiedust.Rmd'

--- re-building 'sprinkles.Rmd' using rmarkdown
Quitting from lines 18-19 (sprinkles.Rmd) 
Error: processing vignette 'sprinkles.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'sprinkles.Rmd'

SUMMARY: processing the following files failed:
  'advancedMagic.Rmd' 'pixiedust.Rmd' 'sprinkles.Rmd'

Error: Vignette re-building failed.
Execution halted
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pkggraph.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PKNCA.Rcheck/00install.out' for details.
PKmod: no visible global function definition for 'deriv'
Undefined global functions or variables:
  deriv
Consider adding
  importFrom("stats", "deriv")
to your NAMESPACE file.
PKadjust: no visible binding for global variable 'jpeg'
PKadjust: no visible binding for global variable 'bmp'
PKadjust: no visible binding for global variable 'png'
PKadjust: no visible binding for global variable 'tiff'
PKadjust: no visible binding for global variable 'dev.new'
PKadjust: no visible global function definition for 'dev.off'
PKfigure: no visible global function definition for 'dev.cur'
PKfigure: no visible global function definition for 'dev.off'
PKoutput: no visible global function definition for 'heatmap'
PKoutput: no visible global function definition for
  'packageDescription'
PKshow: no visible global function definition for 'browseURL'
addList1: no visible global function definition for 'formula'
addList1.old: no visible global function definition for 'formula'
addList2: no visible global function definition for 'formula'
generate.plot: no visible global function definition for 'dev.off'
writeHTML: no visible global function definition for
  'packageDescription'
writeLst: no visible global function definition for
  'packageDescription'
writeLst.tab: no visible global function definition for
  'packageDescription'
writeTable: no visible global function definition for
  'packageDescription'
writeTable: no visible global function definition for 'quantile'
initialize,nonmem: no visible global function definition for
  'read.table'
Undefined global functions or variables:
  bmp browseURL dev.cur dev.new dev.off formula heatmap jpeg
  packageDescription png quantile read.table tiff
Consider adding
  importFrom("grDevices", "bmp", "dev.cur", "dev.new", "dev.off", "jpeg",
             "png", "tiff")
  importFrom("stats", "formula", "heatmap", "quantile")
  importFrom("utils", "browseURL", "packageDescription", "read.table")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pksensi.Rcheck/00install.out' for details.
Running examples in 'placer-Ex.R' failed
The error most likely occurred in:

> ### Name: plastic.ci
> ### Title: Confidence intervals of plastic prevalence probability
> ### Aliases: plastic.ci
> 
> ### ** Examples
> 
> plastic.ci(rbinom(1000,1,0.5), 30, 100)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: plastic.ci ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'PlAcER.Rmd' using rmarkdown
Quitting from lines 52-57 (PlAcER.Rmd) 
Error: processing vignette 'PlAcER.Rmd' failed with diagnostics:
could not find function "tbl_df"
--- failed re-building 'PlAcER.Rmd'

SUMMARY: processing the following file failed:
  'PlAcER.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/plantecowrap.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PlasmaMutationDetector.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Plasmidprofiler.Rcheck/00install.out' for details.
Running examples in 'plater-Ex.R' failed
The error most likely occurred in:

> ### Name: read_plates
> ### Title: Read multiple plater-formatted files and combine result into one
> ###   data frame.
> ### Aliases: read_plates
> 
> ### ** Examples
> 
> # Combine multiple files into one tidy data frame
> file1 <- system.file("extdata", "example-1.csv", package = "plater")
> file2 <- system.file("extdata", "more-bacteria.csv", package = "plater")
> 
> # Data are stored in plate-shaped form
> data <- read_plates(
+    files = c(file1, file2),
+    plate_names = c("Experiment 1", "Experiment 2"),
+    well_ids_column = "Wells")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: read_plates ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > test_check("plater")
  Loading required package: plater
  -- 1. Error: (unknown) (@test-read_plates.R#27)  -------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. plater::read_plates(paste0(path, plates, ".csv"))
   2. dplyr::bind_rows
   3. base::getExportedValue(pkg, name)
   4. base::asNamespace(ns)
   5. base::getNamespace(ns)
   6. base::loadNamespace(name)
   7. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: view_plate works on grouped tibbles (@test-view_plate.R#257)  -----
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. dplyr::tibble
   2. base::getExportedValue(pkg, name)
   3. base::asNamespace(ns)
   4. base::getNamespace(ns)
   5. base::loadNamespace(name)
   6. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 926 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: (unknown) (@test-read_plates.R#27) 
  2. Error: view_plate works on grouped tibbles (@test-view_plate.R#257) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'plater-basics.Rmd' using rmarkdown
Quitting from lines 131-145 (plater-basics.Rmd) 
Error: processing vignette 'plater-basics.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'plater-basics.Rmd'

SUMMARY: processing the following file failed:
  'plater-basics.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/plethem.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/plinkQC.Rcheck/00install.out' for details.
bwfw.hmm: no visible global function definition for 'dnorm'
bwfw1.hmm: no visible global function definition for 'dnorm'
Undefined global functions or variables:
  dnorm
Consider adding
  importFrom("stats", "dnorm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PLMIX.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'Formula' 'sm'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PLNmodels.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/plot3logit.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/plotdap.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/plotly.Rcheck/00install.out' for details.
plotAuto: no visible global function definition for 'window'
plotAuto: no visible global function definition for 'title'
plotAuto: no visible global function definition for 'axis'
plotAuto: no visible global function definition for 'box'
plotCumu: no visible global function definition for 'title'
plotCumu: no visible global function definition for 'axis'
plotCumu: no visible global function definition for 'box'
plotDens : panel.dens: no visible global function definition for 'var'
plotDens : panel.dens: no visible global function definition for
  'quantile'
plotDens : panel.dens: no visible global function definition for
  'median'
plotDens: no visible global function definition for 'tail'
plotQuant: no visible global function definition for 'par'
plotQuant: no visible binding for global variable 'quantile'
plotQuant: no visible global function definition for 'lines'
plotQuant: no visible global function definition for 'bxp'
plotQuant: no visible global function definition for 'matplot'
plotQuant: no visible global function definition for 'axis'
plotQuant: no visible global function definition for 'box'
plotQuant: no visible global function definition for 'title'
plotSplom: no visible global function definition for 'pairs'
plotTrace : panel.trace: no visible global function definition for
  'var'
plotTrace : panel.trace: no visible global function definition for
  'median'
plotTrace: no visible global function definition for 'tail'
Undefined global functions or variables:
  axis box bxp lines matplot median pairs par quantile tail title var
  window
Consider adding
  importFrom("graphics", "axis", "box", "bxp", "lines", "matplot",
             "pairs", "par", "title")
  importFrom("stats", "median", "quantile", "var", "window")
  importFrom("utils", "tail")
to your NAMESPACE file.
Running examples in 'plotmm-Ex.R' failed
The error most likely occurred in:

> ### Name: plot_cut_point
> ### Title: Tidy Visualization of a Cut Point from a Mixture Model
> ### Aliases: plot_cut_point
> 
> ### ** Examples
> 
> if(require(mixtools)){
+ mixmdl <- mixtools::normalmixEM(faithful$waiting, k = 2)
+ }
Loading required package: mixtools
mixtools package, version 1.2.0, Released 2020-02-05
This package is based upon work supported by the National Science Foundation under Grant No. SES-0518772.

number of iterations= 29 
> plot_cut_point(mixmdl, plot = TRUE, color = "amerika") # returns plot, amerika
Error: Package "dplyr" needed for this function to work. Please install it.
Execution halted
Malformed Title field: should not end in a period.
generateEnvelope: no visible global function definition for 'tail'
Undefined global functions or variables:
  tail
Consider adding
  importFrom("utils", "tail")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
llla.bi: no visible global function definition for 'as.formula'
llla.bi: no visible global function definition for 'glm'
llla.bi: no visible global function definition for 'binomial'
llla.bi: no visible binding for global variable 'logit'
llla.bi: no visible global function definition for 'vcov'
llla.bi: no visible global function definition for 'coef'
llla.mc: no visible global function definition for 'model.matrix'
llla.mc: no visible global function definition for 'as.formula'
llla.mc: no visible global function definition for 'coxph'
llla.mc: no visible global function definition for 'vcov'
llla.mc: no visible global function definition for 'coef'
llla.mle: no visible global function definition for 'as.formula'
llla.mle: no visible global function definition for 'glm'
llla.mle: no visible global function definition for 'poisson'
llla.mle: no visible global function definition for 'coef'
llla.mle: no visible global function definition for 'vcov'
mclgen: no visible global function definition for 'reshape'
simRasch.1D: no visible global function definition for 'rnorm'
simRasch.1D: no visible global function definition for 'runif'
vcov.sandwich.glm: no visible global function definition for
  'model.matrix'
vcov.sandwich.glm: no visible global function definition for 'weights'
vcov.sandwich.glm: no visible global function definition for
  'residuals'
vcov.sandwich.glm: no visible global function definition for 'vcov'
Undefined global functions or variables:
  as.formula binomial coef coxph glm logit model.matrix poisson reshape
  residuals rnorm runif vcov weights
Consider adding
  importFrom("stats", "as.formula", "binomial", "coef", "glm",
             "model.matrix", "poisson", "reshape", "residuals", "rnorm",
             "runif", "vcov", "weights")
to your NAMESPACE file.
Running examples in 'PLSbiplot1-Ex.R' failed
The error most likely occurred in:

> ### Name: Mag.Bmat.plot
> ### Title: Magnitude of the Partial Least Squares Regression (PLSR)
> ###   coefficients matrix
> ### Aliases: Mag.Bmat.plot
> 
> ### ** Examples
> 
> if(require(pls))
+ data(oliveoil, package="pls")
Loading required package: pls

Attaching package: 'pls'

The following object is masked from 'package:stats':

    loadings

> X = as.matrix(oliveoil$chemical, ncol=5)
> dimnames(X) = list(paste(c("G1","G2","G3","G4","G5","I1","I2","I3","I4","I5",
+ "S1","S2","S3","S4","S5","S6")),
+ paste(c("Acidity","Peroxide","K232","K270","DK")))
> Y = as.matrix(oliveoil$sensory, ncol=6)
> dimnames(Y) = list(paste(c("G1","G2","G3","G4","G5","I1","I2","I3","I4","I5",
+ "S1","S2","S3","S4","S5","S6")),
+ paste(c("Yellow","Green","Brown","Glossy","Transp","Syrup")))
> Mag.Bmat.plot(X, Y, algorithm=mod.SIMPLS, A=2)
> 
> #nutrimouse data
> if(require(mixOmics))
+ data(nutrimouse, package="mixOmics")
Loading required package: mixOmics
Loading required package: MASS
Loading required package: lattice
Loading required package: ggplot2
Error: package or namespace load failed for 'mixOmics' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
> X1 = as.matrix(nutrimouse$lipid, ncol=21)
Error in as.matrix(nutrimouse$lipid, ncol = 21) : 
  object 'nutrimouse' not found
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/plsmod.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/plsmselect.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/plsRcox.Rcheck/00install.out' for details.
Package vignette with placeholder title 'Vignette Title':
  'introduction.Rmd'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pltesim.Rcheck/00install.out' for details.
print.densityEHpi: no visible global function definition for 'str'
Undefined global functions or variables:
  str
Consider adding
  importFrom("utils", "str")
to your NAMESPACE file.
Running examples in 'pm4py-Ex.R' failed
The error most likely occurred in:

> ### Name: parameters
> ### Title: PM4Py parameter keys
> ### Aliases: parameters param_activity_key param_attribute_key
> ###   param_timestamp_key param_caseid_key param_resource_key
> ###   default_parameters
> 
> ### ** Examples
> 
> param_activity_key("activity")
$`pm4py:param:activity_key`
[1] "activity"

> 
> library(eventdataR)
> data(patients)
> default_parameters(patients)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: default_parameters ... loadNamespace -> namespaceImport -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(pm4py)
  > 
  > test_check("pm4py")
  -- 1. Error: (unknown) (@test_bridge.R#3)  -------------------------------------
  package or namespace load failed for 'bupaR' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(bupaR)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  -- 2. Error: (unknown) (@test_conformance.R#3)  --------------------------------
  package or namespace load failed for 'bupaR' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(bupaR)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  -- 3. Error: (unknown) (@test_discovery.R#3)  ----------------------------------
  package or namespace load failed for 'bupaR' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(bupaR)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
  1. Error: (unknown) (@test_bridge.R#3) 
  2. Error: (unknown) (@test_conformance.R#3) 
  3. Error: (unknown) (@test_discovery.R#3) 
  
  Error: testthat unit tests failed
  Execution halted
Malformed Description field: should contain one or more complete sentences.
.MCM: no visible global function definition for 'runif'
.MCM: no visible global function definition for 'rmultinom'
.MCM: no visible global function definition for 'mahalanobis'
.MCM: no visible global function definition for 'optimize'
.MCM : f: no visible global function definition for 'mahalanobis'
.MCM: no visible global function definition for 'alarm'
.igpark: no visible global function definition for 'kmeans'
.loglik: no visible global function definition for 'mahalanobis'
.plot.gpcm: no visible global function definition for 'lines'
.plot.gpcm: no visible global function definition for 'legend'
.rwgpar: no visible global function definition for 'rexp'
.weights: no visible global function definition for 'mahalanobis'
Undefined global functions or variables:
  alarm kmeans legend lines mahalanobis optimize rexp rmultinom runif
Consider adding
  importFrom("graphics", "legend", "lines")
  importFrom("stats", "kmeans", "mahalanobis", "optimize", "rexp",
             "rmultinom", "runif")
  importFrom("utils", "alarm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pmc.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pmdplyr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PML.Rcheck/00install.out' for details.
Running 'testthat.R' [43s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(pmml, quietly = T)
  > 
  > test_check("pmml")
  [21:03:19] WARNING: amalgamation/../src/objective/regression_obj.cu:170: reg:linear is now deprecated in favor of reg:squarederror.
  -- 1. Error: (unknown) (@test_schema_validation.R#7)  --------------------------
  package or namespace load failed for 'caret' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(caret)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 260 | SKIPPED: 3 | WARNINGS: 13 | FAILED: 1 ]
  1. Error: (unknown) (@test_schema_validation.R#7) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pmpp.Rcheck/00install.out' for details.
dbm: no visible global function definition for 'optim'
dbm: no visible global function definition for 'new'
destat: no visible global function definition for 'weighted.mean'
local.knn: no visible global function definition for 'sd'
local.knn: no visible global function definition for 'optim'
mdpref: no visible global function definition for 'sd'
mdpref: no visible global function definition for 'text'
mdpref: no visible global function definition for 'lines'
phicom: no visible global function definition for 'optim'
phicom: no visible global function definition for 'new'
pl: no visible global function definition for 'optim'
pl: no visible global function definition for 'new'
rol: no visible global function definition for 'nlm'
rol: no visible global function definition for 'new'
wdbm: no visible global function definition for 'optim'
wdbm: no visible global function definition for 'new'
Undefined global functions or variables:
  lines new nlm optim sd text weighted.mean
Consider adding
  importFrom("graphics", "lines", "text")
  importFrom("methods", "new")
  importFrom("stats", "nlm", "optim", "sd", "weighted.mean")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PNADcIBGE.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'MASS'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
pnmtrem1: no visible global function definition for 'pnorm'
pnmtrem1: no visible global function definition for 'dnorm'
pnmtrem1: no visible global function definition for 'ginv'
pnmtrem1 : fun: no visible global function definition for 'pnorm'
pnmtrem1 : derf: no visible global function definition for 'dnorm'
pnmtrem1 : derf: no visible global function definition for 'pnorm'
pnmtrem1 : fun: no visible global function definition for 'dnorm'
Undefined global functions or variables:
  dnorm ginv pnorm
Consider adding
  importFrom("stats", "dnorm", "pnorm")
to your NAMESPACE file.
'library' or 'require' call to 'rgenoud' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
smooth: no visible global function definition for 'genoud'
Undefined global functions or variables:
  genoud
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PoA.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PogromcyDanych.Rcheck/00install.out' for details.
bipoilogMLE: no visible global function definition for 'optim'
bipoilogMLE: no visible global function definition for 'write.table'
poilogMLE: no visible global function definition for 'optim'
rbipoilog : sim: no visible global function definition for 'rnorm'
rbipoilog : sim: no visible global function definition for 'rpois'
rpoilog : sim: no visible global function definition for 'rnorm'
rpoilog : sim: no visible global function definition for 'rpois'
Undefined global functions or variables:
  optim rnorm rpois write.table
Consider adding
  importFrom("stats", "optim", "rnorm", "rpois")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/poio.Rcheck/00install.out' for details.
approxMargMLE: no visible global function definition for 'optim'
approxMargMLECI : ciFunction: no visible global function definition for
  'qchisq'
approxMargMLECI: no visible global function definition for 'uniroot'
margMLE: no visible global function definition for 'optim'
margMLECI: no visible global function definition for 'optim'
margMLECI : unNormLikeMinusVal: no visible global function definition
  for 'qchisq'
margMLECI: no visible global function definition for 'uniroot'
profMLECI : ciFunction: no visible global function definition for
  'qchisq'
profMLECI: no visible global function definition for 'uniroot'
rtbinom: no visible global function definition for 'rbinom'
rtpois: no visible global function definition for 'rpois'
waldCI: no visible global function definition for 'qnorm'
Undefined global functions or variables:
  optim qchisq qnorm rbinom rpois uniroot
Consider adding
  importFrom("stats", "optim", "qchisq", "qnorm", "rbinom", "rpois",
             "uniroot")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/poissonreg.Rcheck/00install.out' for details.
File
  LICENSE
is not mentioned in the DESCRIPTION file.
Packages in Depends field not imported from:
  'combinat' 'splines'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Est.Depth: no visible global function definition for 'quantile'
PS.FDR: no visible global function definition for 'quantile'
Permu.Ind: no visible global function definition for 'permn'
Permu.Ind: no visible global function definition for 'hcube'
Trans.Data: no visible global function definition for 'write.table'
Trans.Data: no visible global function definition for 'predict'
Trans.Data: no visible global function definition for 'lm'
Undefined global functions or variables:
  hcube lm permn predict quantile write.table
Consider adding
  importFrom("stats", "lm", "predict", "quantile")
  importFrom("utils", "write.table")
to your NAMESPACE file.
rpoistweedie: no visible global function definition for 'runif'
testOmegaPT: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
prepare_Rd: poistweedie.Rd:51: Dropping empty section \references
prepare_Rd: ppoistweedie.Rd:37: Dropping empty section \references
prepare_Rd: qpoistweedie.Rd:40: Dropping empty section \references
prepare_Rd: rpoistweedie.Rd:36: Dropping empty section \references
prepare_Rd: varpt.Rd:31: Dropping empty section \references
Running examples in 'polAr-Ex.R' failed
The error most likely occurred in:

> ### Name: compute_competitiveness
> ### Title: Competitividad (_Competitiveness_)
> ### Aliases: compute_competitiveness
> 
> ### ** Examples
> 
> 
>    tucuman_dip_gral_2017
  category round year codprov name_prov electores  listas  votos
1      dip  gral 2017      23   TUCUMAN   1217274    0180 154930
2      dip  gral 2017      23   TUCUMAN   1217274    0503  46609
3      dip  gral 2017      23   TUCUMAN   1217274    0521 319221
4      dip  gral 2017      23   TUCUMAN   1217274    0548 459257
5      dip  gral 2017      23   TUCUMAN   1217274 blancos   5920
6      dip  gral 2017      23   TUCUMAN   1217274   nulos  12947
> 
>    tucuman_dip_gral_2017 %>% 
+      compute_competitiveness()
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: %>% ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'compute.Rmd' using rmarkdown
Warning: The `x` argument of `as_tibble.matrix()` must have unique column names if `.name_repair` is omitted as of tibble 2.0.0.
Using compatibility `.name_repair`.
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated.
Quitting from lines 30-41 (compute.Rmd) 
Error: processing vignette 'compute.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'compute.Rmd'

--- re-building 'data.Rmd' using rmarkdown
Warning: The `x` argument of `as_tibble.matrix()` must have unique column names if `.name_repair` is omitted as of tibble 2.0.0.
Using compatibility `.name_repair`.
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated.
Quitting from lines 29-35 (data.Rmd) 
Error: processing vignette 'data.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'data.Rmd'

--- re-building 'results.Rmd' using rmarkdown
Warning: The `x` argument of `as_tibble.matrix()` must have unique column names if `.name_repair` is omitted as of tibble 2.0.0.
Using compatibility `.name_repair`.
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated.
Quitting from lines 38-47 (results.Rmd) 
Error: processing vignette 'results.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'results.Rmd'

SUMMARY: processing the following files failed:
  'compute.Rmd' 'data.Rmd' 'results.Rmd'

Error: Vignette re-building failed.
Execution halted
Packages in Depends field not imported from:
  'MASS' 'scatterplot3d'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
plot.poLCA: no visible global function definition for 'layout'
plot.poLCA: no visible global function definition for 'par'
poLCA: no visible global function definition for 'model.frame'
poLCA: no visible global function definition for 'model.response'
poLCA: no visible global function definition for 'model.matrix'
poLCA: no visible global function definition for 'runif'
poLCA: no visible global function definition for 'ginv'
poLCA: no visible global function definition for 'flush.console'
poLCA.makeplot.dich: no visible global function definition for
  'scatterplot3d'
poLCA.makeplot.poly: no visible global function definition for
  'scatterplot3d'
poLCA.se: no visible global function definition for 'ginv'
poLCA.simdata: no visible global function definition for 'runif'
poLCA.simdata: no visible global function definition for 'rnorm'
poLCA.table: no visible global function definition for 'model.frame'
print.poLCA: no visible global function definition for 'pt'
print.poLCA: no visible global function definition for 'flush.console'
rmulti: no visible global function definition for 'runif'
Undefined global functions or variables:
  flush.console ginv layout model.frame model.matrix model.response par
  pt rnorm runif scatterplot3d
Consider adding
  importFrom("graphics", "layout", "par")
  importFrom("stats", "model.frame", "model.matrix", "model.response",
             "pt", "rnorm", "runif")
  importFrom("utils", "flush.console")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/poliscidata.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/polished.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pollen.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'pollimetrydata'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pollimetry.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'examples.Rmd' using rmarkdown
Quitting from lines 17-22 (examples.Rmd) 
Error: processing vignette 'examples.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'examples.Rmd'

SUMMARY: processing the following file failed:
  'examples.Rmd'

Error: Vignette re-building failed.
Execution halted
qPolyaAeppliSingle: no visible global function definition for 'qgamma'
rPolyaAeppli: no visible global function definition for 'rpois'
rPolyaAeppli: no visible global function definition for 'rgeom'
Undefined global functions or variables:
  qgamma rgeom rpois
Consider adding
  importFrom("stats", "qgamma", "rgeom", "rpois")
to your NAMESPACE file.
installed size is 12.1Mb
  sub-directories of 1Mb or more:
    R      6.4Mb
    data   4.6Mb
Package vignette with placeholder title 'Vignette Title':
  'polynomials.Rmd'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/polyPK.Rcheck/00install.out' for details.
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    extdata   3.7Mb
    libs      2.3Mb
Running examples in 'pomp-Ex.R' failed
The error most likely occurred in:

> ### Name: bsflu
> ### Title: Influenza outbreak in a boarding school
> ### Aliases: bsflu
> 
> ### ** Examples
> 
> library(magrittr)
> library(tidyr)
Error: package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'matrixcalc' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'matrixcalc'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
print.mixed.pom: no visible global function definition for 'pnorm'
print.pom: no visible global function definition for 'pnorm'
siteocc : get.mod.matrix: no visible binding for global variable
  'na.pass'
siteocc : get.mod.matrix: no visible global function definition for
  'formula'
siteocc : get.mod.matrix: no visible global function definition for
  'model.matrix'
siteocc: no visible global function definition for 'nlminb'
siteocc: no visible global function definition for
  'is.positive.definite'
Undefined global functions or variables:
  formula is.positive.definite model.matrix na.pass nlminb pnorm
Consider adding
  importFrom("stats", "formula", "model.matrix", "na.pass", "nlminb",
             "pnorm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pooling.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pool.Rcheck/00install.out' for details.
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc   4.9Mb
Error(s) in re-building vignettes:
--- re-building 'examples.Rmd' using rmarkdown
Quitting from lines 152-175 (examples.Rmd) 
Error: processing vignette 'examples.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'examples.Rmd'

--- re-building 'intro-poped.Rmd' using rmarkdown
Quitting from lines 130-153 (intro-poped.Rmd) 
Error: processing vignette 'intro-poped.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'intro-poped.Rmd'

SUMMARY: processing the following files failed:
  'examples.Rmd' 'intro-poped.Rmd'

Error: Vignette re-building failed.
Execution halted
'library' or 'require' call to 'stats' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    R      1.6Mb
    doc    1.1Mb
    libs   2.3Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PopGenReport.Rcheck/00install.out' for details.
asymmetricIntervals: no visible global function definition for 'stack'
bonferroniIntervals: no visible global function definition for 'stack'
bonferroniIntervals: no visible global function definition for 'lm'
bonferroniIntervals: no visible global function definition for
  'predict'
bootstrapIntervals: no visible global function definition for 'stack'
component1a: no visible global function definition for 'pnorm'
component1b: no visible global function definition for 'pnorm'
component2: no visible global function definition for 'dgamma'
eqnForMin: no visible global function definition for 'pnorm'
eqnForMin: no visible global function definition for 'integrate'
integrand : <anonymous>: no visible global function definition for
  'pnorm'
integrand: no visible global function definition for 'dnorm'
integrate2: no visible global function definition for 'integrate'
integrate2a: no visible global function definition for 'integrate'
integrate2b: no visible global function definition for 'integrate'
integrate4a: no visible global function definition for 'integrate'
integrate4b: no visible global function definition for 'integrate'
optimalCScalar2: no visible global function definition for 'uniroot'
optimalLambda: no visible global function definition for 'optimise'
optimalLambdaC: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  dgamma dnorm integrate lm optimise pnorm predict stack uniroot
Consider adding
  importFrom("stats", "dgamma", "dnorm", "integrate", "lm", "optimise",
             "pnorm", "predict", "uniroot")
  importFrom("utils", "stack")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/poplite.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/poppr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/popprxl.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PortfolioAnalysis.Rcheck/00install.out' for details.
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    java   5.1Mb
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(povcalnetR)
  > 
  > test_check("povcalnetR")
  -- 1. Error: Aggregate data are correctly formatted (@test-format_data_aggregate
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. povcalnetR:::format_data_aggregate(df)
   2. dplyr::select
   3. base::getExportedValue(pkg, name)
   4. base::asNamespace(ns)
   5. base::getNamespace(ns)
   6. base::loadNamespace(name)
   7. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: Basic data formatting works as expected (@test-format_data_cl.R#4) 
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. povcalnetR:::format_data_cl(df, coverage = "national")
   2. dplyr::select
   3. base::getExportedValue(pkg, name)
   4. base::asNamespace(ns)
   5. base::getNamespace(ns)
   6. base::loadNamespace(name)
   7. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 23 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: Aggregate data are correctly formatted (@test-format_data_aggregate.R#31) 
  2. Error: Basic data formatting works as expected (@test-format_data_cl.R#4) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'advanced_examples.Rmd' using rmarkdown
Quitting from lines 24-27 (advanced_examples.Rmd) 
Error: processing vignette 'advanced_examples.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'advanced_examples.Rmd'

--- re-building 'povcalnetR.Rmd' using rmarkdown
--- finished re-building 'povcalnetR.Rmd'

--- re-building 'visualization_examples.Rmd' using rmarkdown
Quitting from lines 25-33 (visualization_examples.Rmd) 
Error: processing vignette 'visualization_examples.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'visualization_examples.Rmd'

SUMMARY: processing the following files failed:
  'advanced_examples.Rmd' 'visualization_examples.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'powdR_vignette.Rmd' using rmarkdown
powdR: Full Pattern Summation of X-Ray Powder Diffraction Data
Quitting from lines 261-262 (powdR_vignette.Rmd) 
Error: processing vignette 'powdR_vignette.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'powdR_vignette.Rmd'

SUMMARY: processing the following file failed:
  'powdR_vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Running 'testthat.R' [1s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(dplyr)
  Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'simulations.Rmd' using rmarkdown
Quitting from lines 14-35 (simulations.Rmd) 
Error: processing vignette 'simulations.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'simulations.Rmd'

--- re-building 'technical.Rmd' using rmarkdown
--- finished re-building 'technical.Rmd'

--- re-building 'three-level.Rmd' using rmarkdown
Scale for 'x' is already present. Adding another scale for 'x', which will
replace the existing scale.
--- finished re-building 'three-level.Rmd'

--- re-building 'two-level.Rmd' using rmarkdown
--- finished re-building 'two-level.Rmd'

SUMMARY: processing the following file failed:
  'simulations.Rmd'

Error: Vignette re-building failed.
Execution halted
'library' or 'require' call to 'tcltk' which was already attached by Depends.
  Please remove these calls from your code.
fnfam: no visible global function definition for 'qnorm'
fx: no visible global function definition for 'qnorm'
normplot : <local> : replot: no visible global function definition for
  'qnorm'
normplot : <local> : replot: no visible global function definition for
  'pnorm'
normplot : <local> : replot: no visible global function definition for
  'dnorm'
normplot : <local> : replot: no visible global function definition for
  'points'
normplot : <local> : replot: no visible global function definition for
  'lines'
normplot : <local> : regen: no visible global function definition for
  'rnorm'
normplot : <local> : regen: no visible global function definition for
  'rexp'
nsibs: no visible global function definition for 'qnorm'
ntdt: no visible global function definition for 'uniroot'
plotNtdt: no visible global function definition for 'lines'
plotNtdt: no visible global function definition for 'legend'
ptdt: no visible global function definition for 'optimize'
ptdt: no visible global function definition for 'uniroot'
ptdt: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  dnorm legend lines optimize pnorm points qnorm rexp rnorm uniroot
Consider adding
  importFrom("graphics", "legend", "lines", "points")
  importFrom("stats", "dnorm", "optimize", "pnorm", "qnorm", "rexp",
             "rnorm", "uniroot")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'fcm.Rmd' using rmarkdown
Loading required package: ggplot2
Welcome! Want to learn more? See two factoextra-related books at https://goo.gl/ve3WBa
Quitting from lines 202-207 (fcm.Rmd) 
Error: processing vignette 'fcm.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'fcm.Rmd'

--- re-building 'upfc.Rmd' using rmarkdown
Loading required package: ggplot2
Welcome! Want to learn more? See two factoextra-related books at https://goo.gl/ve3WBa
Quitting from lines 235-240 (upfc.Rmd) 
Error: processing vignette 'upfc.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'upfc.Rmd'

SUMMARY: processing the following files failed:
  'fcm.Rmd' 'upfc.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ppcSpatial.Rcheck/00install.out' for details.
Running examples in 'PPforest-Ex.R' failed
The error most likely occurred in:

> ### Name: PPforest
> ### Title: Projection Pursuit Random Forest
> ### Aliases: PPforest
> 
> ### ** Examples
> 
> #crab example with all the observations used as training
> 
> pprf.crab <- PPforest(data = crab, class = 'Type',
+  std = FALSE, size.tr = 1, m = 200, size.p = .5, PPmethod = 'LDA' , parallel = TRUE, cores = 2)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: PPforest ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'PPforest-vignette.Rmd' using rmarkdown
Loading required package: PPforest
Loading required package: dplyr
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Loading required package: RColorBrewer
Loading required package: GGally
Loading required package: ggplot2
Loading required package: gridExtra
Loading required package: PPtreeViz
Loading required package: partykit
Loading required package: grid
Loading required package: libcoin
Loading required package: mvtnorm
Loading required package: Rcpp
Quitting from lines 155-160 (PPforest-vignette.Rmd) 
Error: processing vignette 'PPforest-vignette.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'PPforest-vignette.Rmd'

SUMMARY: processing the following file failed:
  'PPforest-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'ppitables-Ex.R' failed
The error most likely occurred in:

> ### Name: get_table
> ### Title: Get PPI table/s based on a specified PPI table/s search output
> ### Aliases: get_table
> 
> ### ** Examples
> 
> #
> # Create a tidy format PPI table for Nepal
> #
> get_table(region = "Asia", country = "Nepal")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: get_table ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(ppitables)
  > 
  > test_check("ppitables")
  -- 1. Error: output is a tibble (@test_get_table.R#5)  -------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_is(get_table(), "tbl_df")
    4. ppitables::get_table()
    5. tidyr::gather
    6. base::getExportedValue(pkg, name)
    7. base::asNamespace(ns)
    8. base::getNamespace(ns)
    9. base::loadNamespace(name)
   12. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   13. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: output has correct number of observations (@test_get_table.R#9)  --
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_equal(nrow(get_table(region = "Asia")), 21412)
    5. ppitables::get_table(region = "Asia")
    6. tidyr::gather
    7. base::getExportedValue(pkg, name)
    8. base::asNamespace(ns)
    9. base::getNamespace(ns)
   10. base::loadNamespace(name)
   13. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   14. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 11 | SKIPPED: 0 | WARNINGS: 3 | FAILED: 2 ]
  1. Error: output is a tibble (@test_get_table.R#5) 
  2. Error: output has correct number of observations (@test_get_table.R#9) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PPQplan.Rcheck/00install.out' for details.
Found the following significant warnings:
  StandardizeString.cpp:13:25: warning: passing NULL to non-pointer argument 1 of 'Rcpp::Vector<RTYPE, StoragePolicy>::Vector(const int&) [with int RTYPE = 16; StoragePolicy = Rcpp::PreserveStorage]' [-Wconversion-null]
See 'd:/Rcompile/CRANpkg/local/4.0/PPRL.Rcheck/00install.out' for details.
pps1: no visible global function definition for 'runif'
ppss: no visible global function definition for 'runif'
ppswr: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
prepare_Rd: calif.Rd:5-6: Dropping empty section \arguments
prepare_Rd: calif.Rd:8-9: Dropping empty section \examples
prepare_Rd: califcty.Rd:5-6: Dropping empty section \arguments
prepare_Rd: califcty.Rd:8-9: Dropping empty section \examples
prepare_Rd: sizesok.Rd:12-13: Dropping empty section \examples
prepare_Rd: stratumsizes.Rd:11-12: Dropping empty section \examples
Malformed Description field: should contain one or more complete sentences.
LDA.Tree : Find.proj: no visible binding for global variable 'var'
LDA.Tree : Find.proj: no visible binding for global variable 'IQR'
LDA.Tree : Find.proj: no visible binding for global variable 'median'
PDA.Tree : Find.proj: no visible binding for global variable 'var'
PDA.Tree : Find.proj: no visible binding for global variable 'median'
PDA.Tree : Find.proj: no visible binding for global variable 'IQR'
PP.Tree : Find.proj: no visible binding for global variable 'var'
PP.Tree : Find.proj: no visible binding for global variable 'median'
PP.Tree : Find.proj: no visible binding for global variable 'IQR'
PP.optimize.Huber: no visible binding for global variable 'sd'
PP.optimize.anneal: no visible binding for global variable 'sd'
PP.optimize.plot: no visible binding for global variable 'sd'
PP.optimize.plot: no visible global function definition for 'hist'
PP.optimize.plot: no visible global function definition for 'text'
PP.optimize.plot: no visible global function definition for 'par'
PP.optimize.plot: no visible global function definition for 'colors'
PP.optimize.plot: no visible global function definition for 'pairs'
PP.optimize.random: no visible binding for global variable 'sd'
Undefined global functions or variables:
  IQR colors hist median pairs par sd text var
Consider adding
  importFrom("grDevices", "colors")
  importFrom("graphics", "hist", "pairs", "par", "text")
  importFrom("stats", "IQR", "median", "sd", "var")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
File
  LICENSE
is not mentioned in the DESCRIPTION file.
Malformed Description field: should contain one or more complete sentences.
TT.test : <anonymous>: no visible global function definition for
  't.test'
TT.test: no visible binding for global variable 'sd'
TT.test: no visible global function definition for 'setNames'
kirjelda : combo: no visible binding for global variable 'sd'
kor.tabel: no visible binding for global variable 'cor.test'
Undefined global functions or variables:
  cor.test sd setNames t.test
Consider adding
  importFrom("stats", "cor.test", "sd", "setNames", "t.test")
to your NAMESPACE file.
PKG_CXXFLAGS set in 'src/Makevars.win' without any corresponding files
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/prcr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/precautionary.Rcheck/00install.out' for details.
Running examples in 'precisely-Ex.R' failed
The error most likely occurred in:

> ### Name: map_precisely
> ### Title: Calculate with precisely functions across values
> ### Aliases: map_precisely
> 
> ### ** Examples
> 
> map_precisely(
+   n_risk_difference,
+   precision = seq(from = .02, to = .20, by = .005),
+   exposed = c(.2, .4),
+   unexposed = c(.1, .3),
+   group_ratio = 1
+ )
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: map_precisely ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'introduction-to-precisely.Rmd' using rmarkdown
Quitting from lines 37-50 (introduction-to-precisely.Rmd) 
Error: processing vignette 'introduction-to-precisely.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'introduction-to-precisely.Rmd'

SUMMARY: processing the following file failed:
  'introduction-to-precisely.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/predict3d.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
gausspred: no visible global function definition for 'qt'
mvapred: no visible global function definition for 'qt'
Undefined global functions or variables:
  qt
Consider adding
  importFrom("stats", "qt")
to your NAMESPACE file.
Running examples in 'predictrace-Ex.R' failed
The error most likely occurred in:

> ### Name: predict_race
> ### Title: Find the race of a surname
> ### Aliases: predict_race
> 
> ### ** Examples
> 
> predict_race("franklin")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: predict_race ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'spelling.R' [0s]
  Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(predictrace)
  > 
  > test_check("predictrace")
  -- 1. Error: correct input works (@test-error-silent-stop.R#3)  ----------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_silent(predict_race("smith"))
    9. predictrace::predict_race("smith")
   10. dplyr::left_join
   11. base::getExportedValue(pkg, name)
   12. base::asNamespace(ns)
   13. base::getNamespace(ns)
   14. base::loadNamespace(name)
   15. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: (unknown) (@test-race.R#1)  ---------------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. predictrace::predict_race("smith")
   2. dplyr::left_join
   3. base::getExportedValue(pkg, name)
   4. base::asNamespace(ns)
   5. base::getNamespace(ns)
   6. base::loadNamespace(name)
   7. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 13 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: correct input works (@test-error-silent-stop.R#3) 
  2. Error: (unknown) (@test-race.R#1) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'Predict-race-of-surname.Rmd' using rmarkdown
Quitting from lines 29-30 (Predict-race-of-surname.Rmd) 
Error: processing vignette 'Predict-race-of-surname.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Predict-race-of-surname.Rmd'

SUMMARY: processing the following file failed:
  'Predict-race-of-surname.Rmd'

Error: Vignette re-building failed.
Execution halted
Malformed Description field: should contain one or more complete sentences.
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File 'predmixcor/R/firstlib.r':
  .First.lib calls:
    cat("predmixcor loaded\n", "COPY RIGHT: Longhai Li\n", "http://math.usask.ca/~longhai\n",     "Type ?begin.predmixcor for help\n", sep = "")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.

Predict.mix: no visible global function definition for 'dbinom'
abs_cor: no visible global function definition for 'cor'
gen.alpha.IGamma: no visible global function definition for 'qgamma'
gendata.mix: no visible global function definition for 'runif'
gendata.mix: no visible global function definition for 'rbeta'
mh1.unif: no visible global function definition for 'runif'
train_predict_mix: no visible global function definition for 'dbinom'
training: no visible global function definition for 'runif'
training: no visible global function definition for 'dbinom'
Undefined global functions or variables:
  cor dbinom qgamma rbeta runif
Consider adding
  importFrom("stats", "cor", "dbinom", "qgamma", "rbeta", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PredPsych.Rcheck/00install.out' for details.
Running examples in 'predtoolsTS-Ex.R' failed
The error most likely occurred in:

> ### Name: modl.trControl
> ### Title: Control the splitting to train the data
> ### Aliases: modl.trControl
> 
> ### ** Examples
> 
> modl.trControl(initialWindow=30,horizon=15,fixedWindow=TRUE,givenSummary=TRUE)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: modl.trControl ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/preference.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/prepdat.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/prevtoinc.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pRF.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/priceR.Rcheck/00install.out' for details.
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    libs   7.1Mb
basisplot: no visible global function definition for 'abline'
basisplot: no visible global function definition for 'text'
basisplot: no visible global function definition for 'par'
plot.prinsimp: no visible global function definition for 'screeplot'
plot.simpart: no visible global function definition for 'par'
position_text: no visible global function definition for 'par'
position_text: no visible global function definition for 'strwidth'
simpart.formula: no visible global function definition for 'terms'
simpart.formula: no visible global function definition for
  'model.matrix'
varperc: no visible global function definition for 'lines'
varperc: no visible global function definition for 'text'
varsimp: no visible global function definition for 'points'
varsimp: no visible global function definition for 'text'
varsimp: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline lines model.matrix par points screeplot strwidth terms text
Consider adding
  importFrom("graphics", "abline", "lines", "par", "points", "strwidth",
             "text")
  importFrom("stats", "model.matrix", "screeplot", "terms")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PriorCD.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'gurobi'
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    doc    2.8Mb
    libs   3.3Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/prismadiagramR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/prism.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/prisonbrief.Rcheck/00install.out' for details.
pr.conditional: no visible global function definition for 'qnorm'
pr.marginal: no visible global function definition for 'qnorm'
prLogisticDelta: no visible global function definition for 'glm'
prLogisticDelta: no visible binding for global variable 'binomial'
Undefined global functions or variables:
  binomial glm qnorm
Consider adding
  importFrom("stats", "binomial", "glm", "qnorm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/probably.Rcheck/00install.out' for details.
.pfda.fstep: no visible global function definition for 'dist'
.pfda.mstep: no visible global function definition for 'cov'
Undefined global functions or variables:
  cov dist
Consider adding
  importFrom("stats", "cov", "dist")
to your NAMESPACE file.
prepare_Rd: ProbForecastGOP-package.Rd:42-43: Dropping empty section \seealso
Error(s) in re-building vignettes:
--- re-building 'ProbReco-with-fable.Rmd' using rmarkdown
Quitting from lines 28-36 (ProbReco-with-fable.Rmd) 
Error: processing vignette 'ProbReco-with-fable.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'ProbReco-with-fable.Rmd'

--- re-building 'ProbReco.Rmd' using rmarkdown
--- finished re-building 'ProbReco.Rmd'

SUMMARY: processing the following file failed:
  'ProbReco-with-fable.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/processanimateR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/processcheckR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/processmapR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/processmonitR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/processR.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
GPois: no visible global function definition for 'dnorm'
GPois: no visible binding for global variable 'poisson'
GPois: no visible global function definition for 'predict'
GPois: no visible global function definition for 'fitted'
GPois: no visible global function definition for 'residuals'
GPois: no visible global function definition for 'smooth.spline'
ProDenICA: no visible global function definition for 'rnorm'
d.gaussmix: no visible global function definition for 'dnorm'
djordan: no visible global function definition for 'dt'
djordan: no visible global function definition for 'dunif'
mixmat: no visible global function definition for 'rnorm'
mixmat: no visible global function definition for 'runif'
r.gaussmix: no visible global function definition for 'rmultinom'
r.gaussmix: no visible global function definition for 'rnorm'
rjordan: no visible global function definition for 'rt'
rjordan: no visible global function definition for 'runif'
rmix.dexp: no visible global function definition for 'runif'
Undefined global functions or variables:
  dnorm dt dunif fitted poisson predict residuals rmultinom rnorm rt
  runif smooth.spline
Consider adding
  importFrom("stats", "dnorm", "dt", "dunif", "fitted", "poisson",
             "predict", "residuals", "rmultinom", "rnorm", "rt", "runif",
             "smooth.spline")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/prodest.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'MASS' 'nlme'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
installed size is 10.6Mb
  sub-directories of 1Mb or more:
    extdata   7.4Mb
    libs      2.1Mb
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   1.7Mb
    libs   2.1Mb
Packages in Depends field not imported from:
  'splines' 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
IndividualPROC: no visible global function definition for 'survfit'
IndividualPROC: no visible global function definition for 'quantile'
Undefined global functions or variables:
  quantile survfit
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ProjectManagement.Rcheck/00install.out' for details.
Running examples in 'projects-Ex.R' failed
The error most likely occurred in:

> ### Name: affiliations
> ### Title: View the 'projects()', 'authors()', and 'affiliations()' tables
> ### Aliases: affiliations authors display_metadata projects ideas
> ###   manuscripts
> 
> ### ** Examples
> 
> #############################################################################
> # SETUP
> old_home <- Sys.getenv("HOME")
> old_ppath <- Sys.getenv("PROJECTS_FOLDER_PATH")
> temp_dir <- tempfile("dir")
> dir.create(temp_dir)
> Sys.unsetenv("PROJECTS_FOLDER_PATH")
> Sys.setenv(HOME = temp_dir)
> setup_projects(path = temp_dir)
projects folder created at
D:/temp/RtmpUx1xW9/dir9d7c7c0f3d21/projects

Add affiliations with new_affiliation(),
then add authors with new_author(),
then create projects with new_project()
> new_affiliation(department_name = "Math Dept.",
+                 institution_name = "Springfield College",
+                 address = "123 College St, Springfield, AB")
New affiliation:
# A tibble: 1 x 4
     id department_name institution_name    address                        
  <int> <chr>           <chr>               <chr>                          
1     1 Math Dept.      Springfield College 123 College St, Springfield, AB
> new_affiliation(department_name = "Art Department",
+                 institution_name = "Springfield College",
+                 address = "321 University Boulevard, Springfield, AB",
+                 id = 42)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: new_affiliation ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
installed size is 12.9Mb
  sub-directories of 1Mb or more:
    libs   7.7Mb
    proj   5.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/promotionImpact.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/prophet.Rcheck/00install.out' for details.
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   1.5Mb
    doc    1.4Mb
    libs   2.3Mb
Running 'testthat.R' [23s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(propr)
  > 
  > test_check("propr")
  |------------(25%)----------(50%)----------(75%)----------|
  |------------(25%)----------(50%)----------(75%)----------|
  |------------(25%)----------(50%)----------(75%)----------|
  |------------(25%)----------(50%)----------(75%)----------|
  |------------(25%)----------(50%)----------(75%)----------|
  |------------(25%)----------(50%)----------(75%)----------|
  -- 1. Error: (unknown) (@test-linRcpp.R#2)  ------------------------------------
  package or namespace load failed for 'cccrm' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(cccrm)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  |------------(25%)----------(50%)----------(75%)----------|
  |------------(25%)----------(50%)----------(75%)----------|
  == testthat results  ===========================================================
  [ OK: 201 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test-linRcpp.R#2) 
  
  Error: testthat unit tests failed
  Execution halted
addpi: no visible global function definition for 'lines'
genPerms: no visible global function definition for 'combn'
getVar: no visible global function definition for 'glm'
getVar: no visible global function definition for 'binomial'
getVar: no visible global function definition for 'var'
pba: no visible global function definition for 'glm'
pba: no visible global function definition for 'binomial'
pba: no visible global function definition for 'predict'
pba: no visible global function definition for 'rbinom'
pcr: no visible global function definition for 'quantile'
plotpi: no visible global function definition for 'axis'
plotpi: no visible global function definition for 'abline'
plotpi: no visible global function definition for 'lines'
Undefined global functions or variables:
  abline axis binomial combn glm lines predict quantile rbinom var
Consider adding
  importFrom("graphics", "abline", "axis", "lines")
  importFrom("stats", "binomial", "glm", "predict", "quantile", "rbinom",
             "var")
  importFrom("utils", "combn")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/proPubBills.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ProPublicaR.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'PROsetta.Rmd' using rmarkdown
Quitting from lines 23-27 (PROsetta.Rmd) 
Error: processing vignette 'PROsetta.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'PROsetta.Rmd'

SUMMARY: processing the following file failed:
  'PROsetta.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data   4.0Mb
    libs   2.3Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/protag.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'MASS'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
addIonSatistics: no visible binding for global variable 'median'
adjustOne: no visible binding for global variable 'median'
attachModifications: no visible global function definition for
  'na.omit'
avrgLoadingCalculation: no visible binding for global variable 'median'
channelResponses : estimate: no visible binding for global variable
  'var'
responseStatisics : func: no visible global function definition for
  'aggregate'
testing: no visible global function definition for 'aov'
testingOneshot: no visible global function definition for 'anova'
testingTukey: no visible global function definition for 'TukeyHSD'
Undefined global functions or variables:
  TukeyHSD aggregate anova aov median na.omit var
Consider adding
  importFrom("stats", "TukeyHSD", "aggregate", "anova", "aov", "median",
             "na.omit", "var")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'class' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'class'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
addcircle: no visible global function definition for 'lines'
addclassifierboundary: no visible global function definition for 'par'
addclassifierboundary: no visible global function definition for
  'contour'
plot.protoclass: no visible global function definition for 'box'
plot.protoclass: no visible global function definition for 'rgb2hsv'
plot.protoclass: no visible global function definition for 'col2rgb'
plot.protoclass: no visible global function definition for 'points'
plot.protoclass: no visible global function definition for 'hsv'
predict.protoclass: no visible global function definition for 'knn1'
Undefined global functions or variables:
  box col2rgb contour hsv knn1 lines par points rgb2hsv
Consider adding
  importFrom("grDevices", "col2rgb", "hsv", "rgb2hsv")
  importFrom("graphics", "box", "contour", "lines", "par", "points")
to your NAMESPACE file.
Extract_plant_grapevine_function: no visible global function definition
  for 'na.omit'
Undefined global functions or variables:
  na.omit
Consider adding
  importFrom("stats", "na.omit")
to your NAMESPACE file.
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
    libs   2.3Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/proustr.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'rdt'
Running examples in 'provSummarizeR-Ex.R' failed
The error most likely occurred in:

> ### Name: prov.summarize
> ### Title: Provenance summarization functions
> ### Aliases: prov.summarize prov.summarize.file prov.summarize.run
> 
> ### ** Examples
> 
> ## Not run: prov.summarize ()
> testdata <- system.file("testdata", "prov.json", package = "provSummarizeR")
> prov.summarize.file (testdata)
PROVENANCE SUMMARY for prov.R 

ENVIRONMENT:
Executed at 2020-07-17T14.34.10EDT 
Total execution time is 1.446 seconds
Script last modified at 2019-12-06T14.11.01EST 
Executed with R version 4.0.0 (2020-04-24) 
Executed on x86_64-apple-darwin17.0 (64-bit) running macOS Catalina 10.15.5 
Provenance was collected with rdtLite 1.3 
Provenance is stored in /Users/blerner/Documents/Process/DataProvenance/workspace/provSummarizeR/inst/testscripts/prov_prov 
Hash algorithm is md5 

LIBRARIES:
base 4.0.0
datasets 4.0.0
ggplot2 3.3.2
graphics 4.0.0
grDevices 4.0.0
methods 4.0.0
stats 4.0.0
utils 4.0.0

SOURCED SCRIPTS:
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: prov.summarize.file ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(provParseR)
  > 
  > test_check("provSummarizeR")
  Loading required package: provSummarizeR
  -- 1. Error: (unknown) (@test_provSummarize.R#7)  ------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_known_output(...)
    7. provSummarizeR::prov.summarize.file(...)
    8. provSummarizeR:::summarize.prov(prov, save, create.zip)
    9. provSummarizeR:::generate.summaries(prov, environment)
   10. provSummarizeR:::generate.script.summary(provParseR::get.scripts(prov))
   11. dplyr::select
   12. base::getExportedValue(pkg, name)
   13. base::asNamespace(ns)
   14. base::getNamespace(ns)
   15. base::loadNamespace(name)
   16. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test_provSummarize.R#7) 
  
  Error: testthat unit tests failed
  Execution halted
Package suggested but not available for checking: 'rdt'
Package suggested but not available for checking: 'rdt'
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data      1.6Mb
    extdata   2.3Mb
Package vignette with placeholder title 'Vignette Title':
  'TargetDecoyFDR_Example.Rmd'
Error(s) in re-building vignettes:
--- re-building 'CreatingDecoyDB.Rmd' using rmarkdown
--- finished re-building 'CreatingDecoyDB.Rmd'

--- re-building 'PeptideAnnotationwithProzor.Rmd' using rmarkdown
--- finished re-building 'PeptideAnnotationwithProzor.Rmd'

--- re-building 'TargetDecoyFDR_Example.Rmd' using rmarkdown
Quitting from lines 36-43 (TargetDecoyFDR_Example.Rmd) 
Error: processing vignette 'TargetDecoyFDR_Example.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'TargetDecoyFDR_Example.Rmd'

SUMMARY: processing the following file failed:
  'TargetDecoyFDR_Example.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Przewodnik.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'rpart'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
mahalanobisComposite: no visible global function definition for
  'princomp'
prepareComposite: no visible global function definition for 'cov'
winsorizor : f: no visible global function definition for 'quantile'
Undefined global functions or variables:
  cov princomp quantile
Consider adding
  importFrom("stats", "cov", "princomp", "quantile")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/psData.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pseudorank.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pseudo.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/psfmi.Rcheck/00install.out' for details.
Package vignette with placeholder title 'Vignette Title':
  'PSF_vignette.Rmd'
Malformed Description field: should contain one or more complete sentences.
candidate.overlap: no visible global function definition for
  'write.table'
fisher: no visible global function definition for 'fisher.test'
fisher.iteration: no visible global function definition for
  'download.file'
fisher.iteration: no visible global function definition for
  'read.table'
pSI.list: no visible global function definition for 'write.table'
specificity.index: no visible global function definition for 'png'
specificity.index: no visible global function definition for 'par'
specificity.index: no visible global function definition for 'dev.off'
Undefined global functions or variables:
  dev.off download.file fisher.test par png read.table write.table
Consider adding
  importFrom("grDevices", "dev.off", "png")
  importFrom("graphics", "par")
  importFrom("stats", "fisher.test")
  importFrom("utils", "download.file", "read.table", "write.table")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PSLM2015.Rcheck/00install.out' for details.
'library' or 'require' call to 'numDeriv' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
test.problem : g: no visible global function definition for 'grad'
test.problem: no visible global function definition for 'new'
psoptim,test.problem-missing-missing-missing-missing: no visible global
  function definition for 'new'
show,test.result: no visible global function definition for 'show'
show,test.result: no visible global function definition for 'sd'
Undefined global functions or variables:
  grad new sd show
Consider adding
  importFrom("methods", "new", "show")
  importFrom("stats", "sd")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
pspearman: no visible global function definition for 'pt'
spearman.test: no visible global function definition for
  'complete.cases'
spearman.test: no visible global function definition for 'cor'
Undefined global functions or variables:
  complete.cases cor pt
Consider adding
  importFrom("stats", "complete.cases", "cor", "pt")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pspline.inference.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
Packages in Depends field not imported from:
  'EffectsRelBaseline' 'boot'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
catEffectBootAdaptor: no visible binding for global variable 'sumSqCat'
compExclusionFraction: no visible global function definition for
  'rpois'
compExclusionFraction: no visible global function definition for
  't.test'
compExclusionFraction: no visible global function definition for 'glm'
compExclusionFraction: no visible global function definition for
  'anova'
compPowerCatSelectivity: no visible binding for global variable
  'fRatioStat'
compPowerGeneralRespDetection: no visible binding for global variable
  'sumSqCat'
compPowerRespDetection: no visible binding for global variable
  'sumSqCat'
compRejectionFraction: no visible global function definition for
  'rpois'
compRejectionFraction: no visible global function definition for
  't.test'
compRejectionFraction: no visible global function definition for 'glm'
compRejectionFraction: no visible global function definition for
  'anova'
simCatResp: no visible global function definition for 'rpois'
simNormCatResp: no visible global function definition for 'rnorm'
testCatEffectBoot: no visible global function definition for 'boot'
Undefined global functions or variables:
  anova boot fRatioStat glm rnorm rpois sumSqCat t.test
Consider adding
  importFrom("stats", "anova", "glm", "rnorm", "rpois", "t.test")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/psychmeta.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'multilevel' 'nlme'
A package should be listed in only one of these fields.
'library' or 'require' calls to packages already attached by Depends:
  'multilevel' 'nlme'
  Please remove these calls from your code.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/psychonetrics.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/psycho.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/psychReport.Rcheck/00install.out' for details.
Output for data("psyo_rounds_map", package = "psyosphere"):
  Warning: namespace 'ggmap' is not available and has been replaced
  by .GlobalEnv when processing object 'psyo_rounds_map'
Malformed Description field: should contain one or more complete sentences.
Running examples in 'psyverse-Ex.R' failed
The error most likely occurred in:

> ### Name: apply_graph_theme
> ### Title: Apply multiple DiagrammeR global graph attributes
> ### Aliases: apply_graph_theme
> 
> ### ** Examples
> 
> exampleSpec <-
+   system.file("inst",
+               "extdata",
+               "example_dct_spec_1.dct",
+               package="psyverse");
> parsedSpecs <- load_dct_specs(exampleSpec);
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: load_dct_specs ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > require(testthat);
  Loading required package: testthat
  > testthat::test_check("psyverse");
  Loading required package: psyverse
  -- 1. Error: a dct specification from a file with a single dct specification is 
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. psyverse::load_dct_specs(file.path(exampleDir, "intention_73dnt604.dct"))
    2. psyverse::parse_dct_specs(dctSpecs, headingLevel = headingLevel)
    3. DiagrammeR::create_graph(nodes_df = node_df, edges_df = edge_df)
    7. dplyr::tibble
    8. base::getExportedValue(pkg, name)
    9. base::asNamespace(ns)
   10. base::getNamespace(ns)
   11. base::loadNamespace(name)
   12. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: a directory with dct specifications is loaded correctly (@test-load
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. psyverse::load_dct_dir(exampleDir)
    2. psyverse::parse_dct_specs(dctSpecs, headingLevel = headingLevel)
    3. DiagrammeR::create_graph(nodes_df = node_df, edges_df = edge_df)
    7. dplyr::tibble
    8. base::getExportedValue(pkg, name)
    9. base::asNamespace(ns)
   10. base::getNamespace(ns)
   11. base::loadNamespace(name)
   12. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: a dct specification from a file with a single dct specification is loaded correctly (@test-loading-dct-specs-from-files.R#13) 
  2. Error: a directory with dct specifications is loaded correctly (@test-loading-dct-specs-from-files.R#44) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pterrace.Rcheck/00install.out' for details.
Running examples in 'ptsuite-Ex.R' failed
The error most likely occurred in:

> ### Name: pareto_qq_test
> ### Title: Q-Q Plot to test for Pareto Distribution
> ### Aliases: pareto_qq_test
> 
> ### ** Examples
> 
> x <- generate_pareto(10000, 5, 2)
> pareto_qq_test(x)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: pareto_qq_test ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
installed size is  7.7Mb
  sub-directories of 1Mb or more:
    doc        4.0Mb
    examples   2.6Mb
Malformed Title field: should not end in a period.
Packages in Depends field not imported from:
  'R.utils' 'rmeta'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
ChisqTest_expect: no visible global function definition for 'pchisq'
plot_chase_observed_expected: no visible global function definition for
  'meta.MH'
plot_chase_observed_expected: no visible global function definition for
  'txtProgressBar'
plot_chase_observed_expected: no visible global function definition for
  'setTxtProgressBar'
test.one.treated: no visible global function definition for
  'fisher.test'
test_one: no visible global function definition for 'rbinom'
test_one: no visible global function definition for 'fisher.test'
Undefined global functions or variables:
  fisher.test meta.MH pchisq rbinom setTxtProgressBar txtProgressBar
Consider adding
  importFrom("stats", "fisher.test", "pchisq", "rbinom")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pubh.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PublicationBias.Rcheck/00install.out' for details.
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    libs   6.4Mb
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/pulseTD.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PupillometryR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PupilPre.Rcheck/00install.out' for details.
PurBayes: no visible global function definition for 'update'
PurBayes: no visible global function definition for 'sd'
plot.PurBayes: no visible global function definition for 'quantile'
plot.PurBayes: no visible global function definition for 'lines'
summary.PurBayes : <anonymous>: no visible global function definition
  for 'quantile'
Undefined global functions or variables:
  lines quantile sd update
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "quantile", "sd", "update")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/purrrlyr.Rcheck/00install.out' for details.
CandidateBio.getBio : <anonymous>: no visible global function
  definition for 'na.omit'
Committee.getCommittee : <anonymous>: no visible global function
  definition for 'na.omit'
getAllBios: no visible global function definition for 'txtProgressBar'
getAllBios: no visible global function definition for
  'setTxtProgressBar'
getAllLocalOfficials: no visible global function definition for
  'txtProgressBar'
getAllLocalOfficials: no visible global function definition for
  'setTxtProgressBar'
getAllVotes: no visible global function definition for 'txtProgressBar'
getAllVotes: no visible global function definition for
  'setTxtProgressBar'
Undefined global functions or variables:
  na.omit setTxtProgressBar txtProgressBar
Consider adding
  importFrom("stats", "na.omit")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/PWFSLSmoke.Rcheck/00install.out' for details.
Running examples in 'pwr2ppl-Ex.R' failed
The error most likely occurred in:

> ### Name: MANOVA1f
> ### Title: Compute power for a One Factor MANOVA with up to two levels and
> ###   up to four measures. Takes means, sds, and sample sizes for each
> ###   group. Alpha is .05 by default, alternative values may be entered by
> ###   user
> ### Aliases: MANOVA1f
> 
> ### ** Examples
> 
> MANOVA1f(n=40,m1.1=0,m2.1=1,m3.1=2.4,m4.1=-0.7,
+ m1.2=-0.25,m2.2=-2,m3.2=2,m4.2=-1,
+ s1.1=.4,s2.1=5,s3.1=1.6,s4.1=1.2,
+ s1.2=.4,s2.2=5,s3.2=1.6,s4.2=1.2,
+ r1.2_1=.1,r1.3_1=.1,r1.4_1=.1,
+ r2.3_1=.35,r2.4_1=.45,r3.4_1=.40,
+ r1.2_2=.1,r1.3_2=.1,r1.4_2=.1,
+ r2.3_2=.35,r2.4_2=.45,r3.4_2=.40,alpha=.05)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: MANOVA1f ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    data   7.2Mb
.grid.matrix: no visible global function definition for 'slot'
.matrix2grid: no visible global function definition for 'as'
.poly2grid: no visible global function definition for 'is'
.poly2grid: no visible global function definition for 'slot'
.poly2grid: no visible global function definition for 'as'
.pycno.core : smooth2D : s1d: no visible global function definition for
  'filter'
.pycno.core: no visible global function definition for 'flush.console'
.pycno2matrix: no visible global function definition for 'slot'
Undefined global functions or variables:
  as filter flush.console is slot
Consider adding
  importFrom("methods", "as", "is", "slot")
  importFrom("stats", "filter")
  importFrom("utils", "flush.console")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/qad.Rcheck/00install.out' for details.
csQCAbinTest: no visible global function definition for 'p.adjust'
fsQCApermTest: no visible global function definition for 'p.adjust'
mvQCAbinTest: no visible global function definition for 'p.adjust'
p.threshold.adjust: no visible global function definition for
  'p.adjust'
plot.fsQCApt: no visible global function definition for 'dev.cur'
plot.fsQCApt: no visible global function definition for 'dev.new'
plot.fsQCApt: no visible global function definition for 'par'
plot.fsQCApt: no visible global function definition for 'density'
plot.fsQCApt: no visible global function definition for 'axis'
plot.fsQCApt: no visible global function definition for 'polygon'
plot.fsQCApt: no visible global function definition for 'points'
plot.fsQCApt: no visible global function definition for 'hist'
summary.csQCAbt: no visible global function definition for
  'printCoefmat'
summary.fsQCApt: no visible global function definition for
  'printCoefmat'
summary.mvQCAbt: no visible global function definition for
  'printCoefmat'
Undefined global functions or variables:
  axis density dev.cur dev.new hist p.adjust par points polygon
  printCoefmat
Consider adding
  importFrom("grDevices", "dev.cur", "dev.new")
  importFrom("graphics", "axis", "hist", "par", "points", "polygon")
  importFrom("stats", "density", "p.adjust", "printCoefmat")
to your NAMESPACE file.
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    gui          1.6Mb
    libs         1.2Mb
    staticdocs   3.3Mb
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/qccrs.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/qdap.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/QGameTheory.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'qicharts2.Rmd' using rmarkdown
Quitting from lines 17-25 (qicharts2.Rmd) 
Error: processing vignette 'qicharts2.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'qicharts2.Rmd'

SUMMARY: processing the following file failed:
  'qicharts2.Rmd'

Error: Vignette re-building failed.
Execution halted
chooseMDoubleBootstrap: no visible global function definition for
  'model.matrix'
chooseMDoubleBootstrap: no visible global function definition for
  'as.formula'
chooseMDoubleBootstrap: no visible global function definition for
  'model.frame'
chooseMDoubleBootstrap: no visible global function definition for 'lm'
chooseMDoubleBootstrap: no visible global function definition for
  'coef'
chooseMDoubleBootstrap: no visible global function definition for
  'quantile'
chooseMDoubleBootstrap: no visible global function definition for
  'qnorm'
getModel: no visible global function definition for 'lm'
getModel: no visible global function definition for 'model.matrix'
getModel: no visible global function definition for 'as.formula'
getModel: no visible global function definition for 'model.frame'
getModel: no visible global function definition for 'model.response'
getModel: no visible global function definition for 'coef'
getModel: no visible global function definition for 'qnorm'
qLearn: no visible global function definition for 'model.matrix'
qLearn: no visible global function definition for 'as.formula'
qLearn: no visible global function definition for 'model.frame'
qLearn: no visible global function definition for 'coef'
qLearn: no visible global function definition for 'lm'
qLearn: no visible global function definition for 'quantile'
Undefined global functions or variables:
  as.formula coef lm model.frame model.matrix model.response qnorm
  quantile
Consider adding
  importFrom("stats", "as.formula", "coef", "lm", "model.frame",
             "model.matrix", "model.response", "qnorm", "quantile")
to your NAMESPACE file.
installed size is 10.0Mb
  sub-directories of 1Mb or more:
    libs   9.7Mb
GNU make is a SystemRequirements.
pcAxisCubeMake: no visible global function definition for 'aggregate'
pcAxisCubeToCSV: no visible global function definition for 'write.csv'
Undefined global functions or variables:
  aggregate write.csv
Consider adding
  importFrom("stats", "aggregate")
  importFrom("utils", "write.csv")
to your NAMESPACE file.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    libs   5.2Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/qqplotr.Rcheck/00install.out' for details.
installed size is 10.9Mb
  sub-directories of 1Mb or more:
    data  10.8Mb
installed size is 12.6Mb
  sub-directories of 1Mb or more:
    data  12.5Mb
Malformed Description field: should contain one or more complete sentences.
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    doc    1.1Mb
    libs   4.4Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/qsub.Rcheck/00install.out' for details.
Running examples in 'qtl2pleio-Ex.R' failed
The error most likely occurred in:

> ### Name: add_pmap
> ### Title: Add physical map contents to tibble
> ### Aliases: add_pmap
> 
> ### ** Examples
> 
> pm <- 1:3
> names(pm) <- as.character(paste0('m', 1:3))
> expand.grid(paste0('m', 1:3), paste0('m', 1:3)) %>%
+     tibble::as_tibble() %>%
+     dplyr::mutate(log10lik = rgamma(9, 5)) %>%
+     calc_profile_lods() %>%
+     add_pmap(pm)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: %>% ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [52s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(qtl2pleio)
  > 
  > test_check("qtl2pleio")
  -- 1. Error: output is vector of length nboot (@test-boot_pvl.R#23)  -----------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_length(...)
    4. qtl2pleio::boot_pvl(...)
    5. furrr::future_map_dbl(...)
    6. furrr:::future_map_template(...)
    7. furrr:::multi_resolve(fs, names(.x))
    9. future:::values.list(fs)
   11. future:::resolve.list(...)
   12. future:::signalConditionsASAP(obj, resignal = FALSE, pos = ii)
   13. future:::signalConditions(...)
  
  == testthat results  ===========================================================
  [ OK: 85 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: output is vector of length nboot (@test-boot_pvl.R#23) 
  
  Error: testthat unit tests failed
  Execution halted
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    extdata   3.3Mb
    libs      4.9Mb
Malformed Description field: should contain one or more complete sentences.
ci.length: no visible global function definition for 'qexp'
detectable.bc: no visible global function definition for 'uniroot'
detectable.f2: no visible global function definition for 'uniroot'
detectable.ri: no visible global function definition for 'uniroot'
nu: no visible global function definition for 'pnorm'
nullinfo: no visible global function definition for 'qnorm'
nullinfo: no visible global function definition for 'dnorm'
optselection.bc: no visible global function definition for 'optimize'
optselection.f2: no visible global function definition for 'optimize'
optspacing.bc: no visible global function definition for 'optim'
optspacing.bc: no visible global function definition for 'optimize'
optspacing.f2: no visible global function definition for 'optim'
optspacing.f2: no visible global function definition for 'optimize'
powercalc.bc: no visible global function definition for 'pchisq'
powercalc.f2: no visible global function definition for 'pchisq'
samplesize.bc: no visible global function definition for 'uniroot'
samplesize.f2: no visible global function definition for 'uniroot'
samplesize.ri: no visible global function definition for 'uniroot'
tailprob: no visible global function definition for 'pchisq'
thresh: no visible global function definition for 'uniroot'
Undefined global functions or variables:
  dnorm optim optimize pchisq pnorm qexp qnorm uniroot
Consider adding
  importFrom("stats", "dnorm", "optim", "optimize", "pchisq", "pnorm",
             "qexp", "qnorm", "uniroot")
to your NAMESPACE file.
installed size is 10.6Mb
  sub-directories of 1Mb or more:
    R         1.7Mb
    contrib   3.6Mb
    doc       2.9Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Qtools.Rcheck/00install.out' for details.
'library' or 'require' call to 'Rmpfr' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
adjacencyMatrix: no visible global function definition for 'as'
Undefined global functions or variables:
  as
Consider adding
  importFrom("methods", "as")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
quadp: no visible global function definition for 'var'
Undefined global functions or variables:
  var
Consider adding
  importFrom("stats", "var")
to your NAMESPACE file.
alphaf: no visible global function definition for 'pchisq'
alphaf: no visible global function definition for 'dbinom'
conout: no visible global function definition for 'sd'
ibgaout: no visible global function definition for 'qnorm'
ibgaout: no visible global function definition for 'pnorm'
plot.qualint: no visible global function definition for 'qnorm'
powerval: no visible global function definition for 'rnorm'
powerval: no visible global function definition for 'qnorm'
powerval: no visible global function definition for 'pnorm'
print.expplot: no visible global function definition for 'gray'
print.expplot: no visible binding for global variable 'coef'
print.outplot: no visible global function definition for 'gray'
print.outplot: no visible binding for global variable 'coef'
qualint: no visible global function definition for 'qnorm'
qualval: no visible global function definition for 'qnorm'
surout: no visible global function definition for 'tail'
surout: no visible global function definition for 'coef'
Undefined global functions or variables:
  coef dbinom gray pchisq pnorm qnorm rnorm sd tail
Consider adding
  importFrom("grDevices", "gray")
  importFrom("stats", "coef", "dbinom", "pchisq", "pnorm", "qnorm",
             "rnorm", "sd")
  importFrom("utils", "tail")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/qualmap.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/qualtRics.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'wilcox1973.Rmd' using rmarkdown
Quitting from lines 111-120 (wilcox1973.Rmd) 
Error: processing vignette 'wilcox1973.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'wilcox1973.Rmd'

SUMMARY: processing the following file failed:
  'wilcox1973.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/quantable.Rcheck/00install.out' for details.
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    R      1.1Mb
    libs   3.1Mb
Error(s) in re-building vignettes:
--- re-building 'quickstart.Rmd' using rmarkdown
Package version: 2.1.1
Parallel computing: 2 of 32 threads used.
See https://quanteda.io for tutorials and examples.

Attaching package: 'quanteda'

The following object is masked from 'package:utils':

    View

Quitting from lines 431-436 (quickstart.Rmd) 
Error: processing vignette 'quickstart.Rmd' failed with diagnostics:
object 'data_corpus_irishbudget2010' not found
--- failed re-building 'quickstart.Rmd'

SUMMARY: processing the following file failed:
  'quickstart.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/quanteda.textmodels.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'QuantileNPCI.Rmd' using rmarkdown
Quitting from lines 35-38 (QuantileNPCI.Rmd) 
Error: processing vignette 'QuantileNPCI.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'QuantileNPCI.Rmd'

SUMMARY: processing the following file failed:
  'QuantileNPCI.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    data   4.5Mb
    libs   2.6Mb
Found the following sources/headers with CR or CRLF line endings:
  inst/include/BackTest.h
Some Unix compilers require LF line endings.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/questionr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/queuecomputer.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'fastshp'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/quickpsy.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/quickReg.Rcheck/00install.out' for details.
Running examples in 'quiddich-Ex.R' failed
The error most likely occurred in:

> ### Name: changesAA
> ### Title: Identification of diagnostic molecular characters in a
> ###   nucleotide alignment that also cause diagnostic characters in the
> ###   corresponding amino acid alignment
> ### Aliases: changesAA
> 
> ### ** Examples
> 
> #using a dataset from spider
> #install.packages("spider")
> library(spider)
Error: package or namespace load failed for 'spider' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/quokar.Rcheck/00install.out' for details.
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(quRan)
  > 
  > test_check("quRan")
  -- 1. Error: (unknown) (@test_quran.R#5)  --------------------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::suppressPackageStartupMessages(library(dplyr))
   3. base::library(dplyr)
   4. base::tryCatch(...)
   5. base:::tryCatchList(expr, classes, parentenv, handlers)
   6. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   7. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test_quran.R#5) 
  
  Error: testthat unit tests failed
  Execution halted
Running examples in 'qwraps2-Ex.R' failed
The error most likely occurred in:

> ### Name: qacf
> ### Title: Autocorrelation plot
> ### Aliases: qacf
> 
> ### ** Examples
> 
> # Generate a random data set
> set.seed(42)
> n <- 250
> x1 <- x2 <- x3 <- x4 <- vector('numeric', length = n)
> x1[1] <- runif(1)
> x2[1] <- runif(1)
> x3[1] <- runif(1)
> x4[1] <- runif(1)
> 
> # white noise
> Z.1 <- rnorm(n, 0, 1)
> Z.2 <- rnorm(n, 0, 2)
> Z.3 <- rnorm(n, 0, 5)
> 
> for(i in 2:n)
+ {
+ 	x1[i] <- x1[i-1] + Z.1[i] - Z.1[i-1] + x4[i-1] - x2[i-1]
+ 	x2[i] <- x2[i-1] - 2 * Z.2[i] + Z.2[i-1] - x4[i-1]
+ 	x3[i] <- x3[i-1] + x2[i-1] + 0.2 * Z.3[i] + Z.3[i-1]
+ 	x4[i] <- x4[i-1] + runif(1, 0.5, 1.5) * x4[i-1]
+ }
> testdf <- data.frame(x1, x2, x3, x4)
> 
> # Base acf plot for one variable
> acf(testdf$x1)
> 
> # qacf plot for one variable
> qacf(testdf$x1)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: qacf ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [5s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(qwraps2)
  > 
  > test_check("qwraps2")
  -- 1. Error: (unknown) (@test-summary_table.R#2)  ------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. dplyr::mutate
   2. base::getExportedValue(pkg, name)
   3. base::asNamespace(ns)
   4. base::getNamespace(ns)
   5. base::loadNamespace(name)
   6. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 42 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test-summary_table.R#2) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'summary-statistics.Rmd' using rmarkdown
Quitting from lines 47-65 (summary-statistics.Rmd) 
Error: processing vignette 'summary-statistics.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'summary-statistics.Rmd'

SUMMARY: processing the following file failed:
  'summary-statistics.Rmd'

Error: Vignette re-building failed.
Execution halted
mutualCoherence : .setOneMutualP: no visible global function definition
  for 'combn'
Undefined global functions or variables:
  combn
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/R2019nCoV.Rcheck/00install.out' for details.
conf2d.default: no visible global function definition for 'polygon'
conf2d_int: no visible global function definition for 'contourLines'
Undefined global functions or variables:
  contourLines polygon
Consider adding
  importFrom("grDevices", "contourLines")
  importFrom("graphics", "polygon")
to your NAMESPACE file.
Package vignette with placeholder title 'Vignette Title':
  'R2DGC.Rmd'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/r2dii.analysis.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/r2dii.match.Rcheck/00install.out' for details.
'library' or 'require' call to 'rgdal' which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'matrixStats' 'rgdal' 'sp'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Running examples in 'r2glmm-Ex.R' failed
The error most likely occurred in:

> ### Name: glmPQL
> ### Title: Compute PQL estimates for fixed effects from a generalized
> ###   linear model.
> ### Aliases: glmPQL
> 
> ### ** Examples
> 
> 
> # Load the datasets package for example code
> library(datasets)
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/R2MLwiN.Rcheck/00install.out' for details.
Packages suggested but not available for checking: 'rcom', 'RDCOMClient'
Malformed Title field: should not end in a period.
'library' or 'require' calls in package code:
  'RDCOMClient' 'rcom'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
PPT.AddBlankSlide: no visible global function definition for
  'comIsValidHandle'
PPT.AddDataFrame: no visible global function definition for
  'comIsValidHandle'
PPT.AddDataFrame: no visible global function definition for
  'write.table'
PPT.AddDataFrame: no visible global function definition for 'write.csv'
PPT.AddGraphicstoSlide: no visible global function definition for
  'comIsValidHandle'
PPT.AddGraphicstoSlide: no visible global function definition for
  'dev.cur'
PPT.AddGraphicstoSlide: no visible global function definition for
  'dev.list'
PPT.AddGraphicstoSlide: no visible global function definition for
  'savePlot'
PPT.AddTextSlide: no visible global function definition for
  'comIsValidHandle'
PPT.AddTitleOnlySlide: no visible global function definition for
  'comIsValidHandle'
PPT.AddTitleSlide: no visible global function definition for
  'comIsValidHandle'
PPT.ApplyTemplate: no visible global function definition for
  'comIsValidHandle'
PPT.Close: no visible global function definition for 'comIsValidHandle'
PPT.Init: no visible global function definition for 'comCreateObject'
PPT.Init: no visible global function definition for 'comIsValidHandle'
PPT.Init: no visible global function definition for 'COMCreate'
PPT.Present: no visible global function definition for
  'comIsValidHandle'
PPT.SaveAs: no visible global function definition for
  'comIsValidHandle'
PPT.getAbsolutePath : PPT.filePath: no visible global function
  definition for 'readWindowsShortcut'
Undefined global functions or variables:
  COMCreate comCreateObject comIsValidHandle dev.cur dev.list
  readWindowsShortcut savePlot write.csv write.table
Consider adding
  importFrom("grDevices", "dev.cur", "dev.list", "savePlot")
  importFrom("utils", "write.csv", "write.table")
to your NAMESPACE file.
Running examples in 'r2rtf-Ex.R' failed
The error most likely occurred in:

> ### Name: rtf_body
> ### Title: add table body attributes to the table
> ### Aliases: rtf_body
> 
> ### ** Examples
> 
> library(dplyr) # required to run examples
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Packages suggested but not available for checking: 'rcom', 'RDCOMClient'
'library' or 'require' calls in package code:
  'RDCOMClient' 'rcom'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'rgl' which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'lattice' 'leaps' 'rgl' 's20x'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/r4lineups.Rcheck/00install.out' for details.
Package vignette with placeholder title 'Vignette Title':
  'r511-intro.Rmd'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rabhit.Rcheck/00install.out' for details.
installed size is 10.6Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
    doc    5.9Mb
    libs   2.1Mb
Running examples in 'raceland-Ex.R' failed
The error most likely occurred in:

> ### Name: calculate_metrics
> ### Title: Calculate Metrics
> ### Aliases: calculate_metrics
> 
> ### ** Examples
> 
> library(raster)
Loading required package: sp
> x = create_realizations(race_raster, n = 5)
> w = create_densities(x, race_raster, window_size = 10)
> 
> #1
> df = calculate_metrics(x, w, neighbourhood = 4, fun = "mean")
> 
> #2
> df2 = calculate_metrics(x, w, neighbourhood = 4, fun = "mean", size = 10, threshold = 0.5)
> my_grid = create_grid(x, size = 10)
> 
> df3 = dplyr::filter(df2, realization == 2)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: :: ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'raceland-intro1.Rmd' using rmarkdown
Loading required package: sp
Linking to GEOS 3.8.0, GDAL 3.0.4, PROJ 6.3.1
Quitting from lines 76-81 (raceland-intro1.Rmd) 
Error: processing vignette 'raceland-intro1.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'raceland-intro1.Rmd'

--- re-building 'raceland-intro2.Rmd' using rmarkdown
Loading required package: sp
Linking to GEOS 3.8.0, GDAL 3.0.4, PROJ 6.3.1
Quitting from lines 50-54 (raceland-intro2.Rmd) 
Error: processing vignette 'raceland-intro2.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'raceland-intro2.Rmd'

--- re-building 'raceland-intro3.Rmd' using rmarkdown
--- finished re-building 'raceland-intro3.Rmd'

SUMMARY: processing the following files failed:
  'raceland-intro1.Rmd' 'raceland-intro2.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'preparingData.Rmd' using rmarkdown
Quitting from lines 28-32 (preparingData.Rmd) 
Error: processing vignette 'preparingData.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'preparingData.Rmd'

SUMMARY: processing the following file failed:
  'preparingData.Rmd'

Error: Vignette re-building failed.
Execution halted
Malformed Description field: should contain one or more complete sentences.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/radiant.basics.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/radiant.data.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/radiant.design.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/radiant.multivariate.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/radiant.Rcheck/00install.out' for details.
getsonde: no visible global function definition for 'read.table'
plotsonde: no visible global function definition for 'par'
plotwind: no visible global function definition for 'mtext'
plotwind: no visible global function definition for 'abline'
skewt.axis: no visible global function definition for 'par'
skewt.axis: no visible global function definition for 'axis'
skewt.axis: no visible global function definition for 'mtext'
skewt.axis: no visible global function definition for 'segments'
skewt.axis: no visible global function definition for 'text'
skewt.axis: no visible global function definition for 'lines'
skewt.lines: no visible global function definition for 'lines'
skewt.points: no visible global function definition for 'points'
station.symbol: no visible global function definition for 'sd'
station.symbol: no visible global function definition for 'par'
station.symbol: no visible global function definition for 'lines'
station.symbol: no visible global function definition for 'polygon'
station.symbol: no visible global function definition for 'text'
station.symbol: no visible global function definition for 'segments'
Undefined global functions or variables:
  abline axis lines mtext par points polygon read.table sd segments
  text
Consider adding
  importFrom("graphics", "abline", "axis", "lines", "mtext", "par",
             "points", "polygon", "segments", "text")
  importFrom("stats", "sd")
  importFrom("utils", "read.table")
to your NAMESPACE file.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    data      2.2Mb
    extdata   1.4Mb
Malformed Description field: should contain one or more complete sentences.
Running examples in 'radsafer-Ex.R' failed
The error most likely occurred in:

> ### Name: RN_bin_screen_phot
> ### Title: Search for radioisotopes that dominate a specified energy bin
> ### Aliases: RN_bin_screen_phot
> 
> ### ** Examples
> 
> RN_bin_screen_phot(
+   E_min = 0.1, E_max = 0.3,
+   min_prob = 0.4, min_half_life_seconds = 30 * 24 * 3600,
+   max_half_life_seconds = 3.153e7, no_E_min = 0.015,
+   no_E_max = 0.0999, no_min_prob = 0.05, no_E_min2 = 0.301, no_E_max2 = 10, no_min_prob2 = 0.01
+ )
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: RN_bin_screen_phot ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Introduction_to_radsafer.Rmd' using rmarkdown
Warning in dk_correct(half_life = 10, time_unit = "y", date1 = "2010-01-01") :
  Date mode only provides precision to the day. Use time_lapse mode if more precision is needed.
Quitting from lines 50-53 (Introduction_to_radsafer.Rmd) 
Error: processing vignette 'Introduction_to_radsafer.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Introduction_to_radsafer.Rmd'

SUMMARY: processing the following file failed:
  'Introduction_to_radsafer.Rmd'

Error: Vignette re-building failed.
Execution halted
RnDif.het: no visible global function definition for 'runif'
RnDif.hom: no visible global function definition for 'runif'
RnDifAdv.hom: no visible global function definition for 'runif'
SoilAdv.hom: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Radviz.Rcheck/00install.out' for details.
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    libs   5.7Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rainette.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rai.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ralger.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'intro-to-altmetric.Rmd' using rmarkdown
Quitting from lines 24-40 (intro-to-altmetric.Rmd) 
Error: processing vignette 'intro-to-altmetric.Rmd' failed with diagnostics:
`pmap_dfr()` requires dplyr
--- failed re-building 'intro-to-altmetric.Rmd'

SUMMARY: processing the following file failed:
  'intro-to-altmetric.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is 10.3Mb
  sub-directories of 1Mb or more:
    htmlwidgets   9.4Mb
installed size is 11.5Mb
  sub-directories of 1Mb or more:
    api           3.1Mb
    htmlwidgets   6.7Mb
Found the following sources/headers not terminated with a newline:
  inst/include/ramcmc.h
Some compilers warn on such files.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RAM.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    R      1.6Mb
    help   1.2Mb
    libs   3.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/randomForestExplainer.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
.disableThreads: no visible global function definition for
  'stopCluster'
.enableThreads: no visible global function definition for 'detectCores'
.enableThreads: no visible global function definition for
  'makePSOCKcluster'
.enableThreads: no visible global function definition for
  'clusterExport'
.enableThreads: no visible global function definition for 'clusterCall'
.forwardSelection: no visible binding for global variable 'var'
.forwardSelection: no visible global function definition for 'glm'
.forwardSelection: no visible global function definition for 'formula'
.forwardSelection: no visible global function definition for 'binomial'
.forwardSelection: no visible global function definition for 'lm'
.forwardSelection: no visible global function definition for 'predict'
.predict.internal: no visible global function definition for 'predict'
randomGLM: no visible binding for global variable 'cor'
randomGLM: no visible binding for global variable 'sd'
randomGLM: no visible global function definition for 'var'
thinRandomGLM: no visible global function definition for 'glm'
thinRandomGLM: no visible global function definition for 'binomial'
thinRandomGLM: no visible global function definition for 'lm'
Undefined global functions or variables:
  binomial clusterCall clusterExport cor detectCores formula glm lm
  makePSOCKcluster predict sd stopCluster var
Consider adding
  importFrom("stats", "binomial", "cor", "formula", "glm", "lm",
             "predict", "sd", "var")
to your NAMESPACE file.
anovaF: no visible global function definition for 'anova'
anovaF: no visible global function definition for 'lm'
randInterval: no visible global function definition for 'quantile'
randInterval : <anonymous>: no visible global function definition for
  'quantile'
randPlot: no visible global function definition for 'par'
randPlot: no visible global function definition for 'hist'
randPlot: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline anova hist lm par quantile
Consider adding
  importFrom("graphics", "abline", "hist", "par")
  importFrom("stats", "anova", "lm", "quantile")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'randomizr_vignette.Rmd' using rmarkdown
Quitting from lines 447-464 (randomizr_vignette.Rmd) 
Error: processing vignette 'randomizr_vignette.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'randomizr_vignette.Rmd'

SUMMARY: processing the following file failed:
  'randomizr_vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/randomsearch.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RandPro.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
bartels.rank.test: no visible global function definition for 'na.omit'
bartels.rank.test: no visible global function definition for 'pbeta'
bartels.rank.test: no visible global function definition for 'pnorm'
cox.stuart.test: no visible global function definition for 'pbinom'
difference.sign.test: no visible global function definition for
  'na.omit'
difference.sign.test: no visible global function definition for 'pnorm'
rank.test: no visible global function definition for 'na.omit'
rank.test: no visible global function definition for 'pnorm'
rruns: no visible global function definition for 'runif'
runs.test: no visible global function definition for 'median'
runs.test: no visible global function definition for 'na.omit'
runs.test: no visible global function definition for 'points'
runs.test: no visible global function definition for 'abline'
runs.test: no visible global function definition for 'gray'
runs.test: no visible global function definition for 'pnorm'
turning.point.test: no visible global function definition for 'embed'
turning.point.test: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  abline embed gray median na.omit pbeta pbinom pnorm points runif
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "abline", "points")
  importFrom("stats", "embed", "median", "na.omit", "pbeta", "pbinom",
             "pnorm", "runif")
to your NAMESPACE file.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    R      2.4Mb
    libs   2.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RanglaPunjab.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
rank.L2R: no visible global function definition for 'kmeans'
rank.L2R: no visible global function definition for 'pnorm'
rank.LN: no visible global function definition for 'kmeans'
rank.LN: no visible global function definition for 'pnorm'
rank.gs: no visible global function definition for 'qnorm'
rank.wald: no visible global function definition for 'qnorm'
Undefined global functions or variables:
  kmeans pnorm qnorm
Consider adding
  importFrom("stats", "kmeans", "pnorm", "qnorm")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'BSgenome.Hsapiens.UCSC.hg19' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: 'reshape'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
freq: no visible global function definition for 'xtabs'
freq: no visible binding for global variable 'na.pass'
freq: no visible global function definition for 'melt'
freq: no visible global function definition for 'complete.cases'
freq: no visible global function definition for 'tail'
kurtosis: no visible global function definition for 'na.omit'
label: no visible global function definition for 'tail'
name: no visible global function definition for 'tail'
nvalid : <anonymous>: no visible global function definition for
  'na.omit'
rp.desc: no visible global function definition for 'melt.data.frame'
rp.desc: no visible global function definition for 'cast'
rp.desc: no visible global function definition for 'na.omit'
rp.desc : <anonymous>: no visible global function definition for 'tail'
rp.desc : <anonymous>: no visible global function definition for 'head'
rp.freq: no visible global function definition for 'xtabs'
rp.freq: no visible binding for global variable 'na.pass'
rp.freq: no visible global function definition for 'melt'
rp.freq: no visible global function definition for 'complete.cases'
rp.freq: no visible global function definition for 'tail'
rp.label: no visible global function definition for 'tail'
rp.name: no visible global function definition for 'tail'
rp.outlier : lundcrit: no visible global function definition for 'qf'
rp.outlier: no visible global function definition for 'lm'
rp.outlier: no visible global function definition for 'rstandard'
rp.valid : <anonymous>: no visible global function definition for
  'na.omit'
skewness: no visible global function definition for 'na.omit'
Undefined global functions or variables:
  cast complete.cases head lm melt melt.data.frame na.omit na.pass qf
  rstandard tail xtabs
Consider adding
  importFrom("stats", "complete.cases", "lm", "na.omit", "na.pass", "qf",
             "rstandard", "xtabs")
  importFrom("utils", "head", "tail")
to your NAMESPACE file.
fnRAP: no visible global function definition for 'chisq.test'
fnRAP: no visible global function definition for 'combn'
Undefined global functions or variables:
  chisq.test combn
Consider adding
  importFrom("stats", "chisq.test")
  importFrom("utils", "combn")
to your NAMESPACE file.
Package suggested but not available for checking: 'gurobi'
installed size is  8.4Mb
  sub-directories of 1Mb or more:
    data   3.6Mb
    doc    1.4Mb
    libs   2.8Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Raquifer.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Rarefy.Rcheck/00install.out' for details.
INT_FIX: no visible global function definition for 'rbinom'
INT_FIX: no visible global function definition for 'glm'
INT_FIX: no visible global function definition for 'as.formula'
INT_FIX: no visible global function definition for 'residuals'
INT_FIX: no visible global function definition for 'var'
INT_RAN: no visible global function definition for 'rbinom'
INT_RAN: no visible global function definition for 'as.formula'
INT_RAN: no visible global function definition for 'predict'
JOINT: no visible global function definition for 'rbinom'
JOINT: no visible global function definition for 'glm'
JOINT: no visible global function definition for 'as.formula'
JOINT: no visible global function definition for 'var'
JOINT: no visible global function definition for 'residuals'
pKuonen: no visible global function definition for 'pchisq'
pKuonen: no visible global function definition for 'uniroot'
pKuonen: no visible global function definition for 'pnorm'
rareGE: no visible global function definition for 'rbinom'
rareGE: no visible global function definition for 'as.formula'
rareGE: no visible global function definition for 'predict'
rareGE: no visible global function definition for 'glm'
rareGE: no visible global function definition for 'residuals'
rareGE: no visible global function definition for 'var'
rareGE_joint_mc: no visible global function definition for 'pchisq'
rareGE_joint_mc: no visible global function definition for 'qchisq'
wuweights: no visible global function definition for 'dbeta'
Undefined global functions or variables:
  as.formula dbeta glm pchisq pnorm predict qchisq rbinom residuals
  uniroot var
Consider adding
  importFrom("stats", "as.formula", "dbeta", "glm", "pchisq", "pnorm",
             "predict", "qchisq", "rbinom", "residuals", "uniroot",
             "var")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
BiogTest.individual: no visible global function definition for 'combn'
BiogTest.individual: no visible global function definition for 'runif'
BiogTest.individual: no visible global function definition for 'rlnorm'
BiogTest.individual: no visible global function definition for
  'rnbinom'
BiogTest.sample: no visible global function definition for 'combn'
BiogTest.sample: no visible global function definition for 'runif'
BiogTest.sample: no visible global function definition for 'rlnorm'
BiogTest.sample: no visible global function definition for 'rnbinom'
BiogTest.sample: no visible global function definition for 'aggregate'
EcoTest.individual: no visible global function definition for 'xtabs'
plot.BiogTest: no visible global function definition for 'quantile'
plot.BiogTest: no visible global function definition for 'combn'
plot.EcoTest: no visible global function definition for 'quantile'
Undefined global functions or variables:
  aggregate combn quantile rlnorm rnbinom runif xtabs
Consider adding
  importFrom("stats", "aggregate", "quantile", "rlnorm", "rnbinom",
             "runif", "xtabs")
  importFrom("utils", "combn")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RaSEn.Rcheck/00install.out' for details.
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(rasterly)
  Loading required package: Rcpp
  > 
  > test_check("rasterly")
  -- 1. Error: (unknown) (@test_rasterly.R#5)  -----------------------------------
  package or namespace load failed for 'plotly' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(plotly)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test_rasterly.R#5) 
  
  Error: testthat unit tests failed
  Execution halted
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    R      2.5Mb
    libs   2.9Mb
rateratio.test: no visible global function definition for
  'complete.cases'
rateratio.test: no visible global function definition for 'pbinom'
rateratio.test : p.L: no visible global function definition for 'qbeta'
rateratio.test : p.U: no visible global function definition for 'qbeta'
Undefined global functions or variables:
  complete.cases pbinom qbeta
Consider adding
  importFrom("stats", "complete.cases", "pbinom", "qbeta")
to your NAMESPACE file.
concordance: no visible global function definition for 'quantile'
concordance : Normal: no visible global function definition for 'qnorm'
concordance : Normal: no visible global function definition for 'pnorm'
concordance : MC: no visible global function definition for 'rmultinom'
concordance : MC: no visible global function definition for 'quantile'
concordance: no visible global function definition for 'qnorm'
concordance: no visible global function definition for 'pnorm'
concordance : Chisq: no visible global function definition for 'qchisq'
concordance : Chisq: no visible global function definition for 'pchisq'
concordance : Normal2: no visible global function definition for
  'qnorm'
concordance : Normal2: no visible global function definition for
  'pnorm'
concordance : MC2: no visible global function definition for
  'rmultinom'
concordance : MC2: no visible global function definition for 'quantile'
wlin.conc: no visible global function definition for 'quantile'
wlin.conc : MC: no visible global function definition for 'rmultinom'
wlin.conc : MC: no visible global function definition for 'quantile'
wquad.conc: no visible global function definition for 'quantile'
wquad.conc : MC: no visible global function definition for 'rmultinom'
wquad.conc : MC: no visible global function definition for 'quantile'
Undefined global functions or variables:
  pchisq pnorm qchisq qnorm quantile rmultinom
Consider adding
  importFrom("stats", "pchisq", "pnorm", "qchisq", "qnorm", "quantile",
             "rmultinom")
to your NAMESPACE file.
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(RAthena)
  > 
  > test_check("RAthena")
  -- 1. Error: (unknown) (@test-dplyr-compute.R#8)  ------------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  -- 2. Error: (unknown) (@test-dplyr-copy_to.R#8)  ------------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  -- 3. Error: (unknown) (@test-dplyr-sql-trans-env.R#8)  ------------------------
  package or namespace load failed for 'dbplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dbplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 8 | SKIPPED: 14 | WARNINGS: 0 | FAILED: 3 ]
  1. Error: (unknown) (@test-dplyr-compute.R#8) 
  2. Error: (unknown) (@test-dplyr-copy_to.R#8) 
  3. Error: (unknown) (@test-dplyr-sql-trans-env.R#8) 
  
  Error: testthat unit tests failed
  Execution halted
.GCD: no visible global function definition for 'as.polynomial'
.LCM: no visible global function definition for 'as.polynomial'
.is_zero_polynomial: no visible global function definition for 'coef'
.poly2expr: no visible global function definition for 'coef'
integral.rationalfun: no visible global function definition for 'coef'
integraterf.transcendent: no visible global function definition for
  'coef'
rationalfun: no visible global function definition for 'polynomial'
rationalfun.poly: no visible global function definition for
  'polynomial'
rationalfun.poly: no visible global function definition for
  'is.polynomial'
rfun: no visible global function definition for 'polynomial'
rfun.poly: no visible global function definition for 'polynomial'
rfun.poly: no visible global function definition for 'is.polynomial'
simplify: no visible global function definition for 'coef'
simplify: no visible global function definition for 'polynomial'
Undefined global functions or variables:
  as.polynomial coef is.polynomial polynomial
Consider adding
  importFrom("stats", "coef")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ratPASTA.Rcheck/00install.out' for details.
installed size is  8.4Mb
  sub-directories of 1Mb or more:
    data   3.6Mb
    etc    1.9Mb
    po     1.2Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ravelRy.Rcheck/00install.out' for details.
.avisApiBusAvanzada: no visible global function definition for
  'read.csv'
.avisRenderMapAdmin: no visible global function definition for 'points'
.avisRenderMapAdmin: no visible global function definition for 'rect'
.avisRenderMapPhysical: no visible global function definition for
  'points'
avisMap: no visible global function definition for 'par'
avisMap: no visible global function definition for 'layout'
Undefined global functions or variables:
  layout par points read.csv rect
Consider adding
  importFrom("graphics", "layout", "par", "points", "rect")
  importFrom("utils", "read.csv")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rawKS.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'raw.Rmd' using rmarkdown
Quitting from lines 113-114 (raw.Rmd) 
Error: processing vignette 'raw.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'raw.Rmd'

SUMMARY: processing the following file failed:
  'raw.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rawr.Rcheck/00install.out' for details.
Running examples in 'rayrender-Ex.R' failed
The error most likely occurred in:

> ### Name: light
> ### Title: Light Material
> ### Aliases: light
> 
> ### ** Examples
> 
> #Generate the cornell box without a light and add a single white sphere to the center
> scene = generate_cornell(light=FALSE) %>%
+   add_object(sphere(x=555/2,y=555/2,z=555/2,radius=555/8,material=light()))
> 
> #All gather around the orb
> scene = generate_ground(material = diffuse(checkercolor="grey50")) %>%
+   add_object(sphere(radius=0.5,material=light(intensity=5,color="red"))) %>%
+   add_object(obj_model(r_obj(), z=-3,x=-1.5,y=-1, angle=c(0,45,0))) %>%
+   add_object(pig(scale=0.3, x=1.5,z=-2,y=-1.5,angle=c(0,-135,0)))
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: %>% ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data   2.9Mb
    libs   2.5Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RBaseX.Rcheck/00install.out' for details.
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs   4.6Mb
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rbgm.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rbison.Rcheck/00install.out' for details.
GetHistoricTradeData: no visible global function definition for
  'read.csv'
Undefined global functions or variables:
  read.csv
Consider adding
  importFrom("utils", "read.csv")
to your NAMESPACE file.
Package vignette with placeholder title 'Vignette Title':
  'RBitmoji.Rmd'
Found the following notes/warnings:
  Non-staged installation was used
See 'd:/Rcompile/CRANpkg/local/4.0/Rblpapi.Rcheck/00install.out' for details.
installed size is 11.3Mb
  sub-directories of 1Mb or more:
    libs  10.4Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RBMRB.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rbokeh.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
SumTestSens: no visible global function definition for 'pnorm'
binarysens: no visible global function definition for 'dbinom'
hlsens: no visible global function definition for 'wilcox.test'
iv_sens: no visible global function definition for 'pnorm'
mcontrol: no visible global function definition for 'pnorm'
psens: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  dbinom pnorm wilcox.test
Consider adding
  importFrom("stats", "dbinom", "pnorm", "wilcox.test")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RBPcurve.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RBtest.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
find_available_versions: no visible global function definition for
  'contrib.url'
find_available_versions: no visible global function definition for
  'available.packages'
install_version: no visible global function definition for
  'contrib.url'
install_version: no visible global function definition for
  'available.packages'
install_version: no visible global function definition for
  'install_url'
load_available_packages: no visible global function definition for
  'contrib.url'
validate_installed_package: no visible global function definition for
  'installed.packages'
Undefined global functions or variables:
  available.packages contrib.url install_url installed.packages
Consider adding
  importFrom("utils", "available.packages", "contrib.url",
             "installed.packages")
to your NAMESPACE file.
Package vignette with placeholder title 'Vignette Title':
  'rcane.Rmd'
RC.read.table: no visible global function definition for 'type.convert'
Undefined global functions or variables:
  type.convert
Consider adding
  importFrom("utils", "type.convert")
to your NAMESPACE file.
installed size is 25.8Mb
  sub-directories of 1Mb or more:
    cont  25.8Mb
Found the following sources/headers not terminated with a newline:
  inst/include/cereal/types/memory.hpp
Some compilers warn on such files.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rchess.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
.onAttach: no visible global function definition for
  'packageDescription'
rselect.list: no visible global function definition for 'select.list'
Undefined global functions or variables:
  packageDescription select.list
Consider adding
  importFrom("utils", "packageDescription", "select.list")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rcicr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RClickhouse.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
get_ClinicalCodes: no visible global function definition for 'read.csv'
get_ClinicalCodes : <anonymous>: no visible global function definition
  for 'read.csv'
Undefined global functions or variables:
  read.csv
Consider adding
  importFrom("utils", "read.csv")
to your NAMESPACE file.
cmaOptimDP: no visible global function definition for 'flush.console'
Undefined global functions or variables:
  flush.console
Consider adding
  importFrom("utils", "flush.console")
to your NAMESPACE file.
Depends: includes the non-default packages:
  'biclust', 'fabia', 'iBBiG', 'superbiclust', 'BcDiag', 'BicARE',
  's4vd', 'BiBitR'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RcmdrPlugin.BiclustGUI.Rcheck/00install.out' for details.
enterTableMHTest : onOK: no visible global function definition for
  'na.omit'
startStop: no visible global function definition for 'na.omit'
Undefined global functions or variables:
  na.omit
Consider adding
  importFrom("stats", "na.omit")
to your NAMESPACE file.
Namespace with empty importFrom: 'tcltk'
'library' or 'require' calls to packages already attached by Depends:
  'depthTools' 'tcltk'
  Please remove these calls from your code.
computeMBD : OnOutput: no visible global function definition for
  'tkbutton'
computeMBD: no visible global function definition for 'tkbutton'
computeMBD : OnPlot: no visible global function definition for
  'tkcanvas'
computeMBD : OnPlot: no visible global function definition for
  'tkbutton'
computeTmean: no visible global function definition for 'tkcanvas'
computeTmean: no visible global function definition for 'tkbutton'
computeTmean : onOK: no visible global function definition for 'par'
plotCentralCurves: no visible global function definition for 'tkcanvas'
plotCentralCurves: no visible global function definition for 'tkbutton'
plotCentralCurves : onOK: no visible global function definition for
  'par'
Undefined global functions or variables:
  par tkbutton tkcanvas
Consider adding
  importFrom("graphics", "par")
to your NAMESPACE file.
'library' or 'require' call to 'FrF2.catlg128' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
managedata: no visible binding for global variable 'data'
Undefined global functions or variables:
  data
Consider adding
  importFrom("utils", "data")
to your NAMESPACE file.
'library' or 'require' calls in package code:
  'abind' 'e1071' 'qcc'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Malformed Description field: should contain one or more complete sentences.
BOXWP: no visible binding for global variable 'top'
BOXWP: no visible binding for global variable 'buttonsFrame'
HIST: no visible binding for global variable 'top'
HIST: no visible binding for global variable 'buttonsFrame'
QQN: no visible binding for global variable 'top'
QQN: no visible binding for global variable 'buttonsFrame'
Undefined global functions or variables:
  buttonsFrame top
Namespaces with empty importFrom:
  'stats' 'tcltk'
Malformed Description field: should contain one or more complete sentences.
fncLRpROC: no visible global function definition for 'palette'
fncLRpROC : onOK : convert: no visible global function definition for
  'col2rgb'
fncLRpROC : onOK : convert: no visible global function definition for
  'rgb'
fncPairedpROC: no visible global function definition for 'palette'
fncPairedpROC : onOK : convert: no visible global function definition
  for 'col2rgb'
fncPairedpROC : onOK : convert: no visible global function definition
  for 'rgb'
fncUnpairedpROC: no visible global function definition for 'palette'
fncUnpairedpROC : onOK : convert: no visible global function definition
  for 'col2rgb'
fncUnpairedpROC : onOK : convert: no visible global function definition
  for 'rgb'
fncvpROC: no visible global function definition for 'palette'
fncvpROC : onOK : convert: no visible global function definition for
  'col2rgb'
fncvpROC : onOK : convert: no visible global function definition for
  'rgb'
Undefined global functions or variables:
  col2rgb palette rgb
Consider adding
  importFrom("grDevices", "col2rgb", "palette", "rgb")
to your NAMESPACE file.
SampleSizes: no visible global function definition for 'xtabs'
SampleSizes: no visible global function definition for 'weighted.mean'
SampleSizes: no visible global function definition for 'reshape'
stage1Sample.fn: no visible global function definition for 'runif'
stage2Sample.fn: no visible global function definition for 'runif'
strata.options : onOK: no visible global function definition for
  'packageDescription'
Undefined global functions or variables:
  packageDescription reshape runif weighted.mean xtabs
Consider adding
  importFrom("stats", "reshape", "runif", "weighted.mean", "xtabs")
  importFrom("utils", "packageDescription")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RcmdrPlugin.SCDA.Rcheck/00install.out' for details.
'library' or 'require' call to 'SLC' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'SLC'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rcmdr.steeptestDij : onOK: no visible binding for global variable
  'replications'
Rcmdr.steeptestPij : onOK: no visible binding for global variable
  'replications'
Undefined global functions or variables:
  replications
Consider adding
  importFrom("stats", "replications")
to your NAMESPACE file.
Package suggested but not available for checking: 'ROpenOffice'
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    R     1.2Mb
    doc   2.3Mb
    po    2.3Mb
Malformed Description field: should contain one or more complete sentences.
brewer.pal: no visible global function definition for 'rgb'
display.brewer.all: no visible global function definition for 'par'
display.brewer.all: no visible global function definition for 'rect'
display.brewer.all: no visible global function definition for 'text'
display.brewer.pal: no visible global function definition for 'image'
Undefined global functions or variables:
  image par rect rgb text
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "image", "par", "rect", "text")
to your NAMESPACE file.
addLine: no visible global function definition for 'abline'
ellipse: no visible global function definition for 'approx'
ellipse: no visible global function definition for 'tail'
Undefined global functions or variables:
  abline approx tail
Consider adding
  importFrom("graphics", "abline")
  importFrom("stats", "approx")
  importFrom("utils", "tail")
to your NAMESPACE file.
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    corpora   7.4Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0gcc8/Rcplex.Rcheck/00install.out' for details.
Found the following sources/headers not terminated with a newline:
  inst/include/Rcpp/traits/static_max_int.h
Some compilers warn on such files.
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    libs   5.4Mb
installed size is  9.7Mb
  sub-directories of 1Mb or more:
    include   6.3Mb
    libs      2.4Mb
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    libs   5.8Mb
installed size is 10.8Mb
  sub-directories of 1Mb or more:
    include   7.7Mb
    libs      2.4Mb
Gauss: no visible global function definition for 'dnorm'
Undefined global functions or variables:
  dnorm
Consider adding
  importFrom("stats", "dnorm")
to your NAMESPACE file.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   5.8Mb
GNU make is a SystemRequirements.
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    include   1.6Mb
    lib       3.8Mb
    libs      3.4Mb
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    include   6.3Mb
    libs      2.3Mb
installed size is 16.0Mb
  sub-directories of 1Mb or more:
    include   2.4Mb
    lib      13.2Mb
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Rcpp.Rcheck/00install.out' for details.
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    jsonexamples   3.8Mb
    libs           3.3Mb
Found the following sources/headers not terminated with a newline:
  inst/include/pflineart.h
Some compilers warn on such files.
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:

======== End of example output (where/before crash/hang up occured ?) ========
Running 'testthat.R' [1s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(RcppXsimd)
  > 
  > test_check("RcppXsimd")
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Package vignette with placeholder title 'Vignette Title':
  'rcreds.Rmd'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rcrimeanalysis.Rcheck/00install.out' for details.
Found the following sources/headers with CR or CRLF line endings:
  inst/include/rCRM.h
  inst/include/rCRM_RcppExports.h
Some Unix compilers require LF line endings.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rcrossref.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rcrtan.Rcheck/00install.out' for details.
Running 'testthat.R' [13s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(rcrypt)
  > 
  > test_check("rcrypt")
  gpg: decryption failed: bad key
  -- 1. Error: Decryption with passphrase passthrough and armor works (@test-decry
  cannot open the connection
  Backtrace:
   1. base::readLines("file2-decrypt.txt")
   2. base::file(con, "r")
  
  == testthat results  ===========================================================
  [ OK: 18 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 1 ]
  1. Error: Decryption with passphrase passthrough and armor works (@test-decrypt.r#69) 
  
  Error: testthat unit tests failed
  Execution halted
Running examples in 'RCT-Ex.R' failed
The error most likely occurred in:

> ### Name: balance_regression
> ### Title: balance_regression() Runs a LPM of treatment status against all
> ###   covariates (treatment~X'B).
> ### Aliases: balance_regression
> 
> ### ** Examples
> 
> data <-data.frame(x1 = rnorm(n = 100, mean = 100, sd = 15), x2= rnorm(n = 100, mean = 65), 
+ treat = rep(c(0,1,2,3,4), each = 20))
> balance_regression(data, treatment = "treat")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: balance_regression ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    libs   4.4Mb
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Rdca.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rdefra.Rcheck/00install.out' for details.
distimage: no visible binding for global variable 'terrain.colors'
distimage: no visible global function definition for 'filled.contour'
distimage: no visible global function definition for 'title'
distimage: no visible global function definition for 'axis'
distimage: no visible global function definition for 'lines'
drawkpc: no visible global function definition for 'segments'
drawkpc: no visible global function definition for 'lines'
modelimage: no visible binding for global variable 'topo.colors'
modelimage: no visible global function definition for 'filled.contour'
modelimage: no visible global function definition for 'title'
modelimage: no visible global function definition for 'axis'
modelimage: no visible global function definition for 'lines'
sincdata: no visible global function definition for 'runif'
sincdata: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  axis filled.contour lines rnorm runif segments terrain.colors title
  topo.colors
Consider adding
  importFrom("grDevices", "terrain.colors", "topo.colors")
  importFrom("graphics", "axis", "filled.contour", "lines", "segments",
             "title")
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rdflib.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rdfp.Rcheck/00install.out' for details.
sumry_categorical: no visible global function definition for 'freq'
sumry_continous: no visible global function definition for 'quantile'
Undefined global functions or variables:
  freq quantile
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
Found the following significant warnings:
  skein_block64.c:226:39: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
See 'd:/Rcompile/CRANpkg/local/4.0/RDieHarder.Rcheck/00install.out' for details.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   4.2Mb
Running examples in 'RDML-Ex.R' failed
The error most likely occurred in:

> ### Name: RDML
> ### Title: R6 class 'RDML' - contains methods to read and overview
> ###   fluorescence data from RDML v1.1 and v1.2 format files
> ### Aliases: RDML
> ### Keywords: Bio--Rad CFX96 IO LightCycler RDML StepOne file qPCR
> 
> ### ** Examples
> 
> ## EXAMPLE 1:
> ## internal dataset lc96_bACTXY.rdml (in 'data' directory)
> ## generated by Roche LightCycler 96. Contains qPCR data
> ## with four targets and two types.
> ## Import with default settings.
> PATH <- path.package("RDML")
> filename <- paste(PATH, "/extdata/", "lc96_bACTXY.rdml", sep ="")
> lc96 <- RDML$new(filename)

Loading experiment: ca1eb225-ecea-4793-9804-87bfbb45f81d
	run: 65aeb1ec-b377-4ef6-b03f-92898d47488b
> 
> tab <- lc96$AsTable(name.pattern = paste(sample[[react$sample$id]]$description,
+                                          react$id$id), 
+                     quantity = sample[[react$sample$id]]$quantity$value)
Warning in lc96$AsTable(name.pattern = paste(sample[[react$sample$id]]$description,  :
  fdata.name column has duplicates! Try another 'name.pattern'.
> ## Show dyes names
> unique(tab$target.dyeId)
[1] "FAM"       "Hex"       "Texas Red" "Cy5"      
> ## Show types of the samples for dye 'FAM'
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rdomains.Rcheck/00install.out' for details.
installed size is 10.1Mb
  sub-directories of 1Mb or more:
    java  10.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RDS.Rcheck/00install.out' for details.
ip2coordinates: no visible global function definition for 'URLencode'
street2coordinates: no visible global function definition for
  'URLencode'
Undefined global functions or variables:
  URLencode
Consider adding
  importFrom("utils", "URLencode")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/readabs.Rcheck/00install.out' for details.
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(readit)
  > 
  > test_check("readit")
  -- 1. Error: Identical .txts, different delimiters (@test_readit.R#18)  --------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. testthat::expect_true(dplyr::all_equal(f, txt_list[[i]]))
   4. dplyr::all_equal
   5. base::getExportedValue(pkg, name)
   6. base::asNamespace(ns)
   7. base::getNamespace(ns)
   8. base::loadNamespace(name)
   9. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: Identical files, different formats (@test_readit.R#37)  -----------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. testthat::expect_true(dplyr::all_equal(f, file_list[[i]]))
   4. dplyr::all_equal
   5. base::getExportedValue(pkg, name)
   6. base::asNamespace(ns)
   7. base::getNamespace(ns)
   8. base::loadNamespace(name)
   9. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 15 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 2 ]
  1. Error: Identical .txts, different delimiters (@test_readit.R#18) 
  2. Error: Identical files, different formats (@test_readit.R#37) 
  
  Error: testthat unit tests failed
  Execution halted
Running 'testthat.R' [8s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(readODS)
  > test_check("readODS")
  -- 1. Error: (unknown) (@test_write_ods_append_update.R#1)  --------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 47 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test_write_ods_append_update.R#1) 
  
  Error: testthat unit tests failed
  Execution halted
GNU make is a SystemRequirements.
Running examples in 'readsdr-Ex.R' failed
The error most likely occurred in:

> ### Name: create_stan_function
> ### Title: Create a Stan's ODE function from an XMILE file
> ### Aliases: create_stan_function
> 
> ### ** Examples
> 
> path <- system.file("models", "SIR.stmx", package = "readsdr")
> create_stan_function(path, "my_model")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: create_stan_function ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Introduction_to_readsdr.Rmd' using rmarkdown
Quitting from lines 107-111 (Introduction_to_readsdr.Rmd) 
Error: processing vignette 'Introduction_to_readsdr.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Introduction_to_readsdr.Rmd'

SUMMARY: processing the following file failed:
  'Introduction_to_readsdr.Rmd'

Error: Vignette re-building failed.
Execution halted
Running 'testthat.R' [35s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(readwritesqlite)
  > 
  > test_check("readwritesqlite")
  -- 1. Error: sf data frames with single geometry passed back (@test-pool.R#2)  -
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. pool::dbPool
    2. base::getExportedValue(pkg, name)
    3. base::asNamespace(ns)
    4. base::getNamespace(ns)
    5. base::loadNamespace(name)
    8. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   11. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   12. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 587 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: sf data frames with single geometry passed back (@test-pool.R#2) 
  
  Error: testthat unit tests failed
  Execution halted
'library' or 'require' calls to packages already attached by Depends:
  'leaps' 'mgcv'
  Please remove these calls from your code.
xy: warning in assign(xname, X, env = .GlobalEnv): partial argument
  match of 'env' to 'envir'
xy: warning in assign(yname, y, env = .GlobalEnv): partial argument
  match of 'env' to 'envir'
bestmods: no visible global function definition for 'abline'
bestmods: no visible global function definition for 'axis'
bestmods: no visible global function definition for 'lines'
cic: no visible global function definition for 'lsfit'
cic: no visible global function definition for 'var'
cvic: no visible global function definition for 'lsfit'
cvic: no visible global function definition for 'lm'
eic: no visible global function definition for 'lsfit'
eic: no visible global function definition for 'lm'
ic.min: no visible global function definition for 'lsfit'
scoremods: no visible global function definition for 'lsfit'
scoremods: no visible global function definition for 'var'
xy: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  abline axis lines lm lsfit rnorm var
Consider adding
  importFrom("graphics", "abline", "axis", "lines")
  importFrom("stats", "lm", "lsfit", "rnorm", "var")
to your NAMESPACE file.
prepare_Rd: bestmods.Rd:47-49: Dropping empty section \note
prepare_Rd: bestmods.Rd:43-44: Dropping empty section \references
prepare_Rd: cic.Rd:24-26: Dropping empty section \details
prepare_Rd: cic.Rd:40-42: Dropping empty section \note
prepare_Rd: cvic.Rd:49-51: Dropping empty section \note
prepare_Rd: eic.Rd:31-33: Dropping empty section \details
prepare_Rd: eic.Rd:50-52: Dropping empty section \note
prepare_Rd: eic.Rd:56-58: Dropping empty section \seealso
prepare_Rd: ic.min.Rd:22-24: Dropping empty section \details
prepare_Rd: ic.min.Rd:47-49: Dropping empty section \note
prepare_Rd: ic.min.Rd:53-55: Dropping empty section \seealso
prepare_Rd: reams-package.Rd:16-17: Dropping empty section \references
prepare_Rd: reams-package.Rd:19-20: Dropping empty section \seealso
prepare_Rd: reams-package.Rd:21-22: Dropping empty section \examples
prepare_Rd: scoremods.Rd:26-28: Dropping empty section \details
prepare_Rd: scoremods.Rd:43-45: Dropping empty section \note
prepare_Rd: xy.Rd:46-48: Dropping empty section \note
prepare_Rd: xy.Rd:52: Dropping empty section \seealso
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rebird.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'recexcavAAR-vignette-1.Rmd' using rmarkdown
Loading required package: usethis
Loading required package: kriging
Quitting from lines 27-33 (recexcavAAR-vignette-1.Rmd) 
Error: processing vignette 'recexcavAAR-vignette-1.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'recexcavAAR-vignette-1.Rmd'

--- re-building 'recexcavAAR-vignette-2.Rmd' using rmarkdown
Loading required package: usethis
Loading required package: kriging
--- finished re-building 'recexcavAAR-vignette-2.Rmd'

--- re-building 'recexcavAAR-vignette-3.Rmd' using rmarkdown
Loading required package: kriging
Transformation: 
 local centroid: 3.66666666666667 2.66666666666667 
 absolute centroid: 578172.831 6017856.63333333 
 scale: 1.08105445197455 
 rotation arc: 216.864428620413
--- finished re-building 'recexcavAAR-vignette-3.Rmd'

SUMMARY: processing the following file failed:
  'recexcavAAR-vignette-1.Rmd'

Error: Vignette re-building failed.
Execution halted
ReCiPa: no visible global function definition for 'count.fields'
ReCiPa: no visible global function definition for 'read.table'
Undefined global functions or variables:
  count.fields read.table
Consider adding
  importFrom("utils", "count.fields", "read.table")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/recipes.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/reclin.Rcheck/00install.out' for details.
installed size is  8.9Mb
  sub-directories of 1Mb or more:
    data   8.8Mb
Malformed Description field: should contain one or more complete sentences.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for 'RecurRisk' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'd:/RCompile/CRANpkg/lib/4.0/dplyr/libs/x64/dplyr.dll':
  LoadLibrary failure:  Das angegebene Modul wurde nicht gefunden.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ReDaMoR.Rcheck/00install.out' for details.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc    3.3Mb
    libs   2.2Mb
Running examples in 'REDCapR-Ex.R' failed
The error most likely occurred in:

> ### Name: collapse_vector
> ### Title: Collapse a vector of values into a single string when necessary
> ### Aliases: collapse_vector
> 
> ### ** Examples
> 
> library(REDCapR) #Load the package into the current R session.
> REDCapR:::collapse_vector(elements=NULL, collapsed=NULL)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: <Anonymous> ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'BasicREDCapROperations.Rmd' using rmarkdown
Quitting from lines 73-76 (BasicREDCapROperations.Rmd) 
Error: processing vignette 'BasicREDCapROperations.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'BasicREDCapROperations.Rmd'

--- re-building 'SecurityDatabase.Rmd' using rmarkdown
--- finished re-building 'SecurityDatabase.Rmd'

--- re-building 'TroubleshootingApiCalls.Rmd' using rmarkdown
--- finished re-building 'TroubleshootingApiCalls.Rmd'

--- re-building 'advanced-redcapr-operations.Rmd' using rmarkdown
Failed with error:  'DLL 'dplyr' not found: maybe not installed for this architecture?'
Failed with error:  'DLL 'dplyr' not found: maybe not installed for this architecture?'
Quitting from lines 73-81 (advanced-redcapr-operations.Rmd) 
Error: processing vignette 'advanced-redcapr-operations.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'advanced-redcapr-operations.Rmd'

SUMMARY: processing the following files failed:
  'BasicREDCapROperations.Rmd' 'advanced-redcapr-operations.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RedditExtractoR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/REddyProcNCDF.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/REddyProc.Rcheck/00install.out' for details.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   5.0Mb
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   4.8Mb
AutoCorrelationLRtest: no visible global function definition for
  'logLik'
AutoCorrelationLRtest: no visible global function definition for
  'pchisq'
REEMtree: no visible global function definition for 'terms'
REEMtree: no visible binding for global variable 'SubsetVector'
REEMtree: no visible global function definition for 'predict'
REEMtree: no visible global function definition for 'logLik'
fitted.REEMtree: no visible global function definition for 'fitted'
predict.REEMtree: no visible global function definition for 'predict'
residuals.REEMtree: no visible global function definition for
  'residuals'
Undefined global functions or variables:
  SubsetVector fitted logLik pchisq predict residuals terms
Consider adding
  importFrom("stats", "fitted", "logLik", "pchisq", "predict",
             "residuals", "terms")
to your NAMESPACE file.
S3 methods shown with full name in documentation object 'fitted.REEMtree':
  'fitted.REEMtree'

S3 methods shown with full name in documentation object 'logLik':
  'logLik.REEMtree'

S3 methods shown with full name in documentation object 'plot':
  'plot.REEMtree'

S3 methods shown with full name in documentation object 'predict':
  'predict.REEMtree'

S3 methods shown with full name in documentation object 'print':
  'print.REEMtree'

S3 methods shown with full name in documentation object 'ranef.REEMtree':
  'ranef.REEMtree'

S3 methods shown with full name in documentation object 'residuals.REEMtree':
  'residuals.REEMtree'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Error(s) in re-building vignettes:
--- re-building 'ref-icar-vignette.Rmd' using rmarkdown
Quitting from lines 21-25 (ref-icar-vignette.Rmd) 
Error: processing vignette 'ref-icar-vignette.Rmd' failed with diagnostics:
package or namespace load failed for 'rcrossref' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'ref-icar-vignette.Rmd'

SUMMARY: processing the following file failed:
  'ref-icar-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'refinr-vignette.Rmd' using rmarkdown
Quitting from lines 84-116 (refinr-vignette.Rmd) 
Error: processing vignette 'refinr-vignette.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'refinr-vignette.Rmd'

SUMMARY: processing the following file failed:
  'refinr-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/refuge.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
cluster.reg: no visible global function definition for 'rnorm'
cluster.reg: no visible global function definition for 'runif'
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(regexTestR)
  > 
  > test_check("regexTestR")
  -- 1. Error: highlight_test_str basic (@test-highlight_test_str.R#5)  ----------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. regexTestR:::highlight_test_str("abc aaa", "a(..)")
    2. tidyr::unnest
    3. base::getExportedValue(pkg, name)
    4. base::asNamespace(ns)
    5. base::getNamespace(ns)
    6. base::loadNamespace(name)
    9. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   10. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: highlight_test_str global = FALSE (@test-highlight_test_str.R#29)  
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. regexTestR:::highlight_test_str("abc aaa", "a(..)", global = FALSE)
    2. tidyr::unnest
    3. base::getExportedValue(pkg, name)
    4. base::asNamespace(ns)
    5. base::getNamespace(ns)
    6. base::loadNamespace(name)
    9. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   10. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 17 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: highlight_test_str basic (@test-highlight_test_str.R#5) 
  2. Error: highlight_test_str global = FALSE (@test-highlight_test_str.R#29) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/regions.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/registr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/regressoR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/regrrr.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Warning in fun(libname, pkgname) :
  package regtest is under development and still may change considerably

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
binregtest: no visible global function definition for 'str'
binregtest: no visible binding for global variable 'str'
binregtest: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif str
Consider adding
  importFrom("stats", "runif")
  importFrom("utils", "str")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rehydratoR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/reinsureR.Rcheck/00install.out' for details.
Package which this enhances but not available for checking: 'Rcplex'
'library' or 'require' call to 'lars' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'lars'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
relaxo: no visible global function definition for 'lars'
Undefined global functions or variables:
  lars
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Relectoral.Rcheck/00install.out' for details.
print.summary.rem: no visible global function definition for
  'printCoefmat'
print.summary.rem: no visible global function definition for 'pnorm'
print.summary.rem: no visible binding for global variable 'quantile'
print.summary.rem: no visible global function definition for 'pchisq'
print.summary.rem.dyad: no visible global function definition for
  'printCoefmat'
print.summary.rem.dyad: no visible global function definition for
  'pnorm'
print.summary.rem.dyad: no visible global function definition for
  'pchisq'
rem: no visible global function definition for 'rnorm'
rem: no visible global function definition for 'dnorm'
rem: no visible global function definition for 'runif'
rem: no visible global function definition for 'rchisq'
rem: no visible global function definition for 'cov'
rem.dyad: no visible global function definition for 'rnorm'
rem.dyad: no visible global function definition for 'optim'
rem.dyad: no visible global function definition for 'rchisq'
rem.dyad: no visible global function definition for 'quantile'
rem.dyad: no visible global function definition for 'sd'
rem.dyad: no visible global function definition for 'var'
rem.dyad.lprior: no visible global function definition for 'dnorm'
rem.dyad.lprior: no visible global function definition for 'dt'
Undefined global functions or variables:
  cov dnorm dt optim pchisq pnorm printCoefmat quantile rchisq rnorm
  runif sd var
Consider adding
  importFrom("stats", "cov", "dnorm", "dt", "optim", "pchisq", "pnorm",
             "printCoefmat", "quantile", "rchisq", "rnorm", "runif",
             "sd", "var")
to your NAMESPACE file.
duane: no visible global function definition for 'optim'
duane.plot: no visible global function definition for 'lines'
duane.plot: no visible global function definition for 'legend'
duane.plot: no visible global function definition for 'title'
littlewood.verall: no visible global function definition for 'optim'
littlewood.verall.plot: no visible global function definition for
  'lines'
littlewood.verall.plot: no visible global function definition for
  'legend'
littlewood.verall.plot: no visible global function definition for
  'title'
moranda.geometric: no visible global function definition for 'optimize'
moranda.geometric.plot: no visible global function definition for
  'lines'
moranda.geometric.plot: no visible global function definition for
  'legend'
moranda.geometric.plot: no visible global function definition for
  'title'
musa.okumoto: no visible global function definition for 'optimize'
musa.okumoto.plot: no visible global function definition for 'lines'
musa.okumoto.plot: no visible global function definition for 'legend'
musa.okumoto.plot: no visible global function definition for 'title'
rel.plot: no visible global function definition for 'lines'
rel.plot: no visible global function definition for 'segments'
rel.plot: no visible global function definition for 'legend'
rel.plot: no visible global function definition for 'title'
total.plot: no visible global function definition for 'lines'
total.plot: no visible global function definition for 'legend'
total.plot: no visible global function definition for 'title'
Undefined global functions or variables:
  legend lines optim optimize segments title
Consider adding
  importFrom("graphics", "legend", "lines", "segments", "title")
  importFrom("stats", "optim", "optimize")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Running 'testthat.R' [5s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > require(testthat)
  Loading required package: testthat
  > require(RelimpPCR)
  Loading required package: RelimpPCR
  > test_check("RelimpPCR")
  -- 1. Error: (unknown) (@tests1.R#9)  ------------------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. RelimpPCR::RelimpPCR(...)
    2. base::lapply(...)
    3. RelimpPCR:::FUN(X[[i]], ...)
    4. caret::train
    5. base::getExportedValue(pkg, name)
    6. base::asNamespace(ns)
    7. base::getNamespace(ns)
    8. base::loadNamespace(name)
   10. base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
   13. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   14. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 1 ]
  1. Error: (unknown) (@tests1.R#9) 
  
  Error: testthat unit tests failed
  Execution halted
CapDistSlope: no visible global function definition for 'coef'
CapDistSlope: no visible global function definition for 'lm'
EnergyEntropyDecomp: no visible global function definition for 'legend'
FernholzDecomp: no visible global function definition for 'legend'
Invest: no visible global function definition for 'par'
Invest: no visible global function definition for 'legend'
SimMarketModel: no visible global function definition for 'rnorm'
plot.capdist: no visible global function definition for 'abline'
plot.capdist: no visible global function definition for 'lm'
plot.toymkt: no visible global function definition for 'par'
plot.toymkt: no visible global function definition for 'legend'
Undefined global functions or variables:
  abline coef legend lm par rnorm
Consider adding
  importFrom("graphics", "abline", "legend", "par")
  importFrom("stats", "coef", "lm", "rnorm")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    doc    6.5Mb
    libs   2.3Mb
Running examples in 'rENA-Ex.R' failed
The error most likely occurred in:

> ### Name: ena
> ### Title: Wrapper to generate, and optionally plot, an ENA model
> ### Aliases: ena
> 
> ### ** Examples
> 
> data(RS.data)
> 
> rs = ena(
+   data = RS.data,
+   units = c("UserName","Condition", "GroupName"),
+   conversation = c("Condition","GroupName"),
+   codes = c('Data',
+             'Technical.Constraints',
+             'Performance.Parameters',
+             'Client.and.Consultant.Requests',
+             'Design.Reasoning',
+             'Collaboration'),
+   window.size.back = 4,
+   print.plots = FALSE,
+   groupVar = "Condition",
+   groups = c("FirstGame", "SecondGame")
+ )
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: ena ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'getting-started.Rmd' using rmarkdown

Attaching package: 'rENA'

The following object is masked from 'package:methods':

    show

Loading required package: ggplot2
Quitting from lines 29-30 (getting-started.Rmd) 
Error: processing vignette 'getting-started.Rmd' failed with diagnostics:
package or namespace load failed for 'plotly' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'getting-started.Rmd'

--- re-building 'means-rotation.Rmd' using rmarkdown
Loading required package: ggplot2
Quitting from lines 22-25 (means-rotation.Rmd) 
Error: processing vignette 'means-rotation.Rmd' failed with diagnostics:
package or namespace load failed for 'plotly' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'means-rotation.Rmd'

SUMMARY: processing the following files failed:
  'getting-started.Rmd' 'means-rotation.Rmd'

Error: Vignette re-building failed.
Execution halted
RearrangeData: no visible global function definition for 'rainbow'
RearrangeData: no visible global function definition for 'hclust'
RearrangeData: no visible global function definition for
  'as.dendrogram'
RearrangeData: no visible global function definition for 'heatmap'
RearrangeData: no visible global function definition for 'pdf'
RearrangeData: no visible global function definition for
  'colorRampPalette'
RearrangeData: no visible global function definition for 'legend'
RearrangeData: no visible global function definition for 'dev.off'
RearrangeJoseph: no visible global function definition for
  'write.table'
RearrangeJoseph: no visible global function definition for
  'as.dendrogram'
RearrangeJoseph: no visible global function definition for
  'order.dendrogram'
colorDendClass : colLab: no visible global function definition for
  'is.leaf'
colorDendClass: no visible global function definition for 'dendrapply'
testData1: no visible global function definition for 'runif'
testData1: no visible global function definition for 'image'
testData2: no visible global function definition for 'runif'
testData2: no visible global function definition for 'image'
Undefined global functions or variables:
  as.dendrogram colorRampPalette dendrapply dev.off hclust heatmap
  image is.leaf legend order.dendrogram pdf rainbow runif write.table
Consider adding
  importFrom("grDevices", "colorRampPalette", "dev.off", "pdf",
             "rainbow")
  importFrom("graphics", "image", "legend")
  importFrom("stats", "as.dendrogram", "dendrapply", "hclust", "heatmap",
             "is.leaf", "order.dendrogram", "runif")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Packages in Depends field not imported from:
  'MASS' 'nlme'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
GlobTestMissing: no visible global function definition for 'lme'
GlobTestMissing: no visible global function definition for 'anova'
TestStatSP: no visible global function definition for 'pf'
TestStatSimple: no visible global function definition for 'ginv'
TestStatSimple: no visible global function definition for 'pf'
Undefined global functions or variables:
  anova ginv lme pf
Consider adding
  importFrom("stats", "anova", "pf")
to your NAMESPACE file.
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   2.4Mb
    libs   2.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Replication.Rcheck/00install.out' for details.
MBoxtest: no visible global function definition for 'var'
jrparams: no visible global function definition for 'prcomp'
jrparams: no visible global function definition for 'predict'
jrparams: no visible global function definition for 'qchisq'
jrparams: no visible global function definition for 'qf'
Undefined global functions or variables:
  prcomp predict qchisq qf var
Consider adding
  importFrom("stats", "prcomp", "predict", "qchisq", "qf", "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/reproducer.Rcheck/00install.out' for details.
call.eqs: no visible global function definition for 'write.table'
read.eqs: no visible global function definition for 'read.fwf'
Undefined global functions or variables:
  read.fwf write.table
Consider adding
  importFrom("utils", "read.fwf", "write.table")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rerddap.Rcheck/00install.out' for details.
Running examples in 'rerddapXtracto-Ex.R' failed
The error most likely occurred in:

> ### Name: plotBBox
> ### Title: plot result of 'rxtracto_3D'
> ### Aliases: plotBBox
> 
> ### ** Examples
> 
> # low resolution selected to keep time to render down
> p <- plotBBox(MBsst, plotColor = 'thermal', maxpixels = 300)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: plotBBox ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'UsingrerddapXtracto.Rmd' using rmarkdown
Quitting from lines 19-26 (UsingrerddapXtracto.Rmd) 
Error: processing vignette 'UsingrerddapXtracto.Rmd' failed with diagnostics:
package or namespace load failed for 'plotdap' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'UsingrerddapXtracto.Rmd'

SUMMARY: processing the following file failed:
  'UsingrerddapXtracto.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   3.1Mb
    libs   2.1Mb
PKG_CFLAGS set in 'src/Makevars' without any corresponding files
.resampleMakeFunction: no visible global function definition for 'is'
.resampleSetSeed: no visible global function definition for 'runif'
CI.bca: no visible global function definition for 'is'
CI.bca: no visible global function definition for 'qnorm'
CI.bca: no visible global function definition for 'pnorm'
CI.t: no visible global function definition for 'qt'
ExpandProbs: no visible global function definition for 'pnorm'
ExpandProbs: no visible global function definition for 'qt'
colVars : f: no visible global function definition for 'var'
colVars: no visible global function definition for 'var'
hist.resample: no visible global function definition for 'density'
hist.resample: no visible global function definition for 'lines'
hist.resample: no visible global function definition for 'points'
hist.resample: no visible global function definition for 'approx'
hist.resample: no visible global function definition for 'segments'
resample: no visible global function definition for 'is'
samp.bootknife: no visible global function definition for 'runif'
samp.bootstrap: no visible global function definition for 'runif'
Undefined global functions or variables:
  approx density is lines pnorm points qnorm qt runif segments var
Consider adding
  importFrom("graphics", "lines", "points", "segments")
  importFrom("methods", "is")
  importFrom("stats", "approx", "density", "pnorm", "qnorm", "qt",
             "runif", "var")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
GUI_template : onHelp: no visible global function definition for 'help'
Undefined global functions or variables:
  help
Consider adding
  importFrom("utils", "help")
to your NAMESPACE file.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    libs      2.5Mb
    swagger   1.4Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/resumer.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Warning: no function found corresponding to methods exports from 'retimes' for: 'show'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Warning: no function found corresponding to methods exports from 'retimes' for: 'show'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
dexgauss: no visible global function definition for 'pnorm'
loglik: no visible global function definition for 'pnorm'
mexgauss: no visible global function definition for 'sd'
rexgauss: no visible global function definition for 'rnorm'
rexgauss: no visible global function definition for 'rexp'
timefit: no visible global function definition for 'optim'
timefit: no visible global function definition for 'sd'
timefit: no visible global function definition for 'par'
timefit: no visible global function definition for 'hist'
timefit: no visible global function definition for 'density'
timefit: no visible global function definition for 'curve'
timefit: no visible global function definition for 'new'
plot,timefit: no visible global function definition for 'density'
plot,timefit: no visible global function definition for 'par'
plot,timefit: no visible global function definition for 'curve'
Undefined global functions or variables:
  curve density hist new optim par pnorm rexp rnorm sd
Consider adding
  importFrom("graphics", "curve", "hist", "par")
  importFrom("methods", "new")
  importFrom("stats", "density", "optim", "pnorm", "rexp", "rnorm", "sd")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/revdbayes.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/revengc.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/revtools.Rcheck/00install.out' for details.
plot.reweight: no visible global function definition for 'par'
plot.reweight: no visible global function definition for 'density'
plot.reweight: no visible global function definition for 'rug'
reweight: no visible global function definition for 'aggregate'
search.best.h: no visible global function definition for 'quantile'
Undefined global functions or variables:
  aggregate density par quantile rug
Consider adding
  importFrom("graphics", "par", "rug")
  importFrom("stats", "aggregate", "density", "quantile")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'log_parsing.Rmd' using rmarkdown
Quitting from lines 29-34 (log_parsing.Rmd) 
Error: processing vignette 'log_parsing.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'log_parsing.Rmd'

--- re-building 'url_parsing.Rmd' using rmarkdown
--- finished re-building 'url_parsing.Rmd'

SUMMARY: processing the following file failed:
  'log_parsing.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    libs   4.6Mb
installed size is  9.4Mb
  sub-directories of 1Mb or more:
    libs   8.1Mb
FDSNGetTimeSeries: no visible global function definition for
  'download.file'
Undefined global functions or variables:
  download.file
Consider adding
  importFrom("utils", "download.file")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RfEmpImp.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rFIA.Rcheck/00install.out' for details.
fs_author_ids : <anonymous>: no visible global function definition for
  'select.list'
fs_download : <anonymous>: no visible global function definition for
  'download.file'
Undefined global functions or variables:
  download.file select.list
Consider adding
  importFrom("utils", "download.file", "select.list")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
Packages in Depends field not imported from:
  'XML' 'xts'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
quoteFXTsData : function.fx: no visible global function definition for
  'xmlValue'
quoteFundTsData : function.fund: no visible global function definition
  for 'xmlValue'
quoteStockTsData : function.stock: no visible global function
  definition for 'xmlSize'
quoteStockTsData : function.stock: no visible global function
  definition for 'xmlValue'
quoteTsData: no visible global function definition for 'xmlRoot'
quoteTsData: no visible global function definition for 'htmlTreeParse'
quoteTsData: no visible global function definition for
  'xmlErrorCumulator'
quoteTsData: no visible global function definition for 'xmlSize'
toXts: no visible global function definition for 'as.xts'
Undefined global functions or variables:
  as.xts htmlTreeParse xmlErrorCumulator xmlRoot xmlSize xmlValue
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rfishbase.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rfishnet2.Rcheck/00install.out' for details.
Running examples in 'rfm-Ex.R' failed
The error most likely occurred in:

> ### Name: rfm_bar_chart
> ### Title: RFM bar chart
> ### Aliases: rfm_bar_chart
> 
> ### ** Examples
> 
> # using transaction data
> analysis_date <- lubridate::as_date('2006-12-31')
> rfm_order <- rfm_table_order(rfm_data_orders, customer_id, order_date,
+ revenue, analysis_date)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: rfm_table_order ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'rfm-customer-level-data.Rmd' using rmarkdown
Quitting from lines 15-26 (rfm-customer-level-data.Rmd) 
Error: processing vignette 'rfm-customer-level-data.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'rfm-customer-level-data.Rmd'

--- re-building 'rfm-transaction-level-data.Rmd' using rmarkdown
Quitting from lines 15-26 (rfm-transaction-level-data.Rmd) 
Error: processing vignette 'rfm-transaction-level-data.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'rfm-transaction-level-data.Rmd'

SUMMARY: processing the following files failed:
  'rfm-customer-level-data.Rmd' 'rfm-transaction-level-data.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'rfPermute-Ex.R' failed
The error most likely occurred in:

> ### Name: impHeatmap
> ### Title: Importance Heatmap
> ### Aliases: impHeatmap
> 
> ### ** Examples
> 
> data(mtcars)
> 
> # A randomForest model
> rf <- randomForest(factor(am) ~ ., mtcars, importance = TRUE)
> importance(rf)
              0          1 MeanDecreaseAccuracy MeanDecreaseGini
mpg   3.6085439  4.8299920            5.1570120        1.0513643
cyl   1.1006672  1.8752027            2.0963503        0.2128961
disp  5.2145802  8.0631572            8.4476655        1.8481357
hp    1.9174919  4.9738587            5.0371940        0.8768533
drat  5.5743157  9.0046005            9.0753230        2.0552791
wt   12.6460573 16.7371824           17.2904661        3.8012383
qsec  5.9572770  3.7329653            5.4690146        1.3975243
vs    3.6146152  0.5608144            2.9643967        0.1430843
gear  9.4788534 13.9098472           13.9703043        3.1261030
carb  0.3580251 -0.9342927           -0.5446649        0.4398967
> impHeatmap(rf, xlab = "Transmission", ylab = "Predictor")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: impHeatmap ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    java   5.2Mb
.testLTS: no visible binding for global variable 'stackloss'
Undefined global functions or variables:
  stackloss
Consider adding
  importFrom("datasets", "stackloss")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rFSA.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Rfssa.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rfVarImpOOB.Rcheck/00install.out' for details.
gabriel.plot: no visible global function definition for 'barplot'
gabriel.plot: no visible global function definition for 'arrows'
rgabriel: no visible binding for global variable 'sd'
rgabriel : psmm_x: no visible global function definition for 'pnorm'
rgabriel : psmm: no visible global function definition for 'integrate'
rgabriel : qsmm: no visible global function definition for 'qnorm'
rgabriel : qsmm: no visible global function definition for 'uniroot'
Undefined global functions or variables:
  arrows barplot integrate pnorm qnorm sd uniroot
Consider adding
  importFrom("graphics", "arrows", "barplot")
  importFrom("stats", "integrate", "pnorm", "qnorm", "sd", "uniroot")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Package in Depends field not imported from: 'gsl'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
gammaIntegral: no visible global function definition for 'integrate'
gammaIntegral : <anonymous>: no visible global function definition for
  'hyperg_1F1'
gammaMLE: no visible global function definition for 'weighted.mean'
gammaMME: no visible binding for global variable 'sd'
gammaMME: no visible binding for global variable 'var'
Undefined global functions or variables:
  hyperg_1F1 integrate sd var weighted.mean
Consider adding
  importFrom("stats", "integrate", "sd", "var", "weighted.mean")
to your NAMESPACE file.
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    data      1.9Mb
    doc       2.2Mb
    extdata   2.7Mb
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RNetCDF
Loading required package: ptw
Loading required package: mixOmics
Loading required package: MASS
Loading required package: lattice
Loading required package: ggplot2
Error: package or namespace load failed for 'mixOmics' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Error: package 'mixOmics' could not be loaded
Execution halted
installed size is 95.6Mb
  sub-directories of 1Mb or more:
    doc        3.3Mb
    gdal       2.1Mb
    libs      80.3Mb
    pictures   1.3Mb
    proj       6.0Mb
installed size is 11.0Mb
  sub-directories of 1Mb or more:
    doc       1.2Mb
    extdata   2.8Mb
    libs      6.5Mb
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rgenius.Rcheck/00install.out' for details.
genoud: multiple local function definitions for 'fn1.bfgs' with
  different formal arguments
genoud: multiple local function definitions for 'gr1' with different
  formal arguments
genoud: multiple local function definitions for 'hess.fn' with
  different formal arguments
genoud_transform: multiple local function definitions for 'fn1.bfgs'
  with different formal arguments
genoud_transform: multiple local function definitions for 'gr1' with
  different formal arguments
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    extdata   4.4Mb
    libs      2.3Mb
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    libs   4.2Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rgho.Rcheck/00install.out' for details.
installed size is  8.5Mb
  sub-directories of 1Mb or more:
    doc     3.6Mb
    fonts   1.5Mb
    libs    1.4Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rgsp.Rcheck/00install.out' for details.
installed size is 20.8Mb
  sub-directories of 1Mb or more:
    R      3.7Mb
    help  10.7Mb
    libs   5.1Mb
Found a 'configure.in' file: 'configure.ac' has long been preferred.
File 'RGtk2/libs/i386/RGtk2.dll':
  Found non-API calls to R: 'R_new_custom_connection',
    'Rf_EncodeInteger', 'Rf_EncodeLogical', 'Rf_EncodeReal',
    'Rf_formatInteger', 'Rf_formatLogical', 'Rf_formatReal'
File 'RGtk2/libs/x64/RGtk2.dll':
  Found non-API calls to R: 'R_new_custom_connection',
    'Rf_EncodeInteger', 'Rf_EncodeLogical', 'Rf_EncodeReal',
    'Rf_formatInteger', 'Rf_formatLogical', 'Rf_formatReal'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
installed size is 11.5Mb
  sub-directories of 1Mb or more:
    doc          10.2Mb
    htmlwidgets   1.2Mb
.quick_fetch: no visible global function definition for 'POST'
.quick_fetch: no visible global function definition for 'add_headers'
.quick_fetch: no visible global function definition for
  'stop_for_status'
.quick_fetch: no visible global function definition for 'content'
fetch_healthdata: no visible binding for global variable 'resources'
fetch_healthdata : <anonymous>: no visible binding for global variable
  'filters'
Undefined global functions or variables:
  POST add_headers content filters resources stop_for_status
Error(s) in re-building vignettes:
--- re-building 'introduction.Rmd' using rmarkdown
Quitting from lines 40-46 (introduction.Rmd) 
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
package or namespace load failed for 'ggtree' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'introduction.Rmd'

SUMMARY: processing the following file failed:
  'introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
GNU make is a SystemRequirements.
Running examples in 'rhmmer-Ex.R' failed
The error most likely occurred in:

> ### Name: read_domtblout
> ### Title: Read a file created through the '--domtblout' option
> ### Aliases: read_domtblout
> 
> ### ** Examples
> 
> file <- system.file('extdata', 'example.domtblout.txt', package='rhmmer')
> read_domtblout(file)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: read_domtblout ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Packages in Depends field not imported from:
  'RCurl' 'XML' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
ECL: no visible global function definition for 'new'
ECLDataset: no visible global function definition for 'new'
ECLDedUp: no visible global function definition for 'new'
ECLDistribute: no visible global function definition for 'new'
ECLIterate: no visible global function definition for 'new'
ECLJoin: no visible global function definition for 'new'
ECLOutput: no visible global function definition for 'new'
ECLProject: no visible global function definition for 'new'
ECLRecord: no visible global function definition for 'new'
ECLRollUp: no visible global function definition for 'new'
ECLSort: no visible global function definition for 'new'
ECLTOPN: no visible global function definition for 'new'
ECLTable: no visible global function definition for 'new'
ECLTransform: no visible global function definition for 'new'
eclDirectCall: no visible global function definition for 'postForm'
parseResults: no visible global function definition for 'xmlRoot'
parseResults: no visible global function definition for 'xmlTreeParse'
parseResults: no visible global function definition for 'getNodeSet'
parseResults: no visible global function definition for 'xmlGetAttr'
parseResults: no visible global function definition for 'xmlValue'
parseResults: no visible global function definition for 'write.table'
Undefined global functions or variables:
  getNodeSet new postForm write.table xmlGetAttr xmlRoot xmlTreeParse
  xmlValue
Consider adding
  importFrom("methods", "new")
  importFrom("utils", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Found the following significant warnings:
  fakemaster.c:82:57: warning: embedded '\0' in format [-Wformat-contains-nul]
See 'd:/Rcompile/CRANpkg/local/4.0/Rhpc.Rcheck/00install.out' for details.
RHT.2samp : my.HotellingT2 : my.InvCov2: no visible global function
  definition for 'cov'
RHT.2samp : get.lambda : get.para: no visible global function
  definition for 'optimize'
RHT.2samp : get.lambda : gg: no visible global function definition for
  'qchisq'
RHT.2samp : get.lambda : ggl: no visible global function definition for
  'qnorm'
RHT.2samp : <anonymous>: no visible global function definition for
  'cov'
RHT.fun : my.HotellingT : my.InvCov: no visible global function
  definition for 'cov'
RHT.fun : get.lambda : get.para: no visible global function definition
  for 'optimize'
RHT.fun : get.lambda : gg: no visible global function definition for
  'qchisq'
RHT.fun : get.lambda : ggl: no visible global function definition for
  'qnorm'
RHT.fun : <anonymous>: no visible global function definition for 'cov'
Undefined global functions or variables:
  cov optimize qchisq qnorm
Consider adding
  importFrom("stats", "cov", "optimize", "qchisq", "qnorm")
to your NAMESPACE file.
Found the following significant warnings:
  chemutil.c:339:23: warning: too many arguments for format [-Wformat-extra-args]
See 'd:/Rcompile/CRANpkg/local/4.0/ribiosUtils.Rcheck/00install.out' for details.
Running examples in 'riceidconverter-Ex.R' failed
The error most likely occurred in:

> ### Name: RiceIDConvert
> ### Title: Convert Biological ID from One to Another for Oryza Sativa
> ### Aliases: RiceIDConvert
> 
> ### ** Examples
> 
> convert_id <- RiceIDConvert('Os01g0100500','RAP',toType = 'MSU')
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: RiceIDConvert ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RIdeogram.Rcheck/00install.out' for details.
FusedQDA : <anonymous>: no visible global function definition for 'cov'
RidgeFused: no visible binding for global variable 'cov2cor'
RidgeFusedCV : <anonymous>: no visible global function definition for
  'cov'
SSRidgeFused : <anonymous>: no visible global function definition for
  'cov'
Undefined global functions or variables:
  cov cov2cor
Consider adding
  importFrom("stats", "cov", "cov2cor")
to your NAMESPACE file.
ridit.raw: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  pchisq
Consider adding
  importFrom("stats", "pchisq")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Riex.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
R2ngon: no visible global function definition for 'approx'
plotR2pre: no visible global function definition for 'points'
plotR2pre: no visible global function definition for 'gray'
plotR2pre: no visible global function definition for 'legend'
plotR2pre: no visible global function definition for 'rainbow'
Undefined global functions or variables:
  approx gray legend points rainbow
Consider adding
  importFrom("grDevices", "gray", "rainbow")
  importFrom("graphics", "legend", "points")
  importFrom("stats", "approx")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Rilostat.Rcheck/00install.out' for details.
plot.ijzip: no visible global function definition for 'axis'
read.ijzip: no visible global function definition for 'unzip'
Undefined global functions or variables:
  axis unzip
Consider adding
  importFrom("graphics", "axis")
  importFrom("utils", "unzip")
to your NAMESPACE file.
Found the following significant warnings:
  RInside.cpp:169:12: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 260 equals destination size [-Wstringop-truncation]
See 'd:/Rcompile/CRANpkg/local/4.0/RInside.Rcheck/00install.out' for details.
installed size is 15.2Mb
  sub-directories of 1Mb or more:
    lib    6.6Mb
    libs   8.1Mb
File 'RInside/libs/i386/RInside.dll':
  Found 'srand', possibly from 'srand' (C)
    Object: 'RInside.o'
File 'RInside/libs/x64/RInside.dll':
  Found 'srand', possibly from 'srand' (C)
    Object: 'RInside.o'
File 'RInside/libs/i386/libRInside.dll':
  Found 'srand', possibly from 'srand' (C)
    Object: 'RInside.o'
File 'RInside/libs/x64/libRInside.dll':
  Found 'srand', possibly from 'srand' (C)
    Object: 'RInside.o'
File 'RInside/libs/i386/RInside.dll':
  Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
    'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
    'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
    'getRUser', 'get_R_HOME'
File 'RInside/libs/x64/RInside.dll':
  Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
    'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
    'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
    'getRUser', 'get_R_HOME'
File 'RInside/libs/i386/libRInside.dll':
  Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
    'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
    'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
    'getRUser', 'get_R_HOME'
File 'RInside/libs/x64/libRInside.dll':
  Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
    'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
    'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
    'getRUser', 'get_R_HOME'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Rinstapkg.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'ripe.Rmd' using rmarkdown
Quitting from lines 66-80 (ripe.Rmd) 
Error: processing vignette 'ripe.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'ripe.Rmd'

--- re-building 'tests_and_coverage.Rmd' using rmarkdown
--- finished re-building 'tests_and_coverage.Rmd'

SUMMARY: processing the following file failed:
  'ripe.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rIP.Rcheck/00install.out' for details.
desmat.sanitize: no visible global function definition for 'aggregate'
dispdist: no visible global function definition for 'quantile'
dispdist: no visible global function definition for 'hist'
dispdist: no visible global function definition for 'lines'
estate: no visible global function definition for 'weighted.mean'
estate: no visible global function definition for 'lm'
genperms: no visible global function definition for 'combn'
genprobexact: no visible global function definition for 'ave'
invert.ci: no visible global function definition for 'quantile'
invert.ci: no visible global function definition for 'uniroot'
omni.ate: no visible global function definition for 'hist'
omni.ate: no visible global function definition for 'lines'
omni.ate: no visible global function definition for 'quantile'
resresplot: no visible global function definition for 'lm'
resresplot: no visible global function definition for 'symbols'
resresplot: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline aggregate ave combn hist lines lm quantile symbols uniroot
  weighted.mean
Consider adding
  importFrom("graphics", "abline", "hist", "lines", "symbols")
  importFrom("stats", "aggregate", "ave", "lm", "quantile", "uniroot",
             "weighted.mean")
  importFrom("utils", "combn")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RISCA.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rise.Rcheck/00install.out' for details.
Running examples in 'riskclustr-Ex.R' failed
The error most likely occurred in:

> ### Name: d
> ### Title: Estimate the incremental explained risk variation in a
> ###   case-control study
> ### Aliases: d
> 
> ### ** Examples
> 
> 
> d(
+   label = "subtype",
+   M = 4,
+   factors = list("x1", "x2", "x3"),
+   data = subtype_data
+ )
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: d ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'calculate_d.Rmd' using rmarkdown
Quitting from lines 46-54 (calculate_d.Rmd) 
Error: processing vignette 'calculate_d.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'calculate_d.Rmd'

--- re-building 'contribute.Rmd' using rmarkdown
--- finished re-building 'contribute.Rmd'

--- re-building 'eh_test.Rmd' using rmarkdown
Quitting from lines 46-53 (eh_test.Rmd) 
Error: processing vignette 'eh_test.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'eh_test.Rmd'

--- re-building 'factor_pvalue.Rmd' using rmarkdown
Quitting from lines 33-36 (factor_pvalue.Rmd) 
Error: processing vignette 'factor_pvalue.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'factor_pvalue.Rmd'

--- re-building 'optimal_d.Rmd' using rmarkdown
Quitting from lines 36-46 (optimal_d.Rmd) 
Error: processing vignette 'optimal_d.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'optimal_d.Rmd'

SUMMARY: processing the following files failed:
  'calculate_d.Rmd' 'eh_test.Rmd' 'factor_pvalue.Rmd' 'optimal_d.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/riskCommunicator.Rcheck/00install.out' for details.
Running 'test-AUC.R' [4s]
  Running 'test-BinomialRegression.R' [7s]
  Running 'test-BrierScore.R' [5s]
  Running 'test-CauseSpecificCoxRegression.R' [5s]
  Running 'test-FineGrayRegression.R' [4s]
  Running 'test-ate.R' [4s]
  Running 'test-boxplotScore.R' [4s]
  Running 'test-iidCox.R' [6s]
  Running 'test-phreg.R' [0s]
  Running 'test-predictCSC.R' [21s]
  Running 'test-predictCox.R' [13s]
  Running 'test-predictCoxPL.R' [6s]
  Running 'test-predictRisk-TD.R' [5s]
  Running 'test-predictRisk.R' [8s]
  Running 'test-score-bootstrap.R' [4s]
  Running 'test-score.R' [11s]
Running the tests in 'tests/test-ate.R' failed.
Complete output:
  > library(riskRegression)
  riskRegression version 2020.02.05
  > library(testthat)
  > library(rms)
  Loading required package: Hmisc
  Loading required package: lattice
  Loading required package: survival
  Loading required package: Formula
  Loading required package: ggplot2
  
  Attaching package: 'Hmisc'
  
  The following object is masked from 'package:testthat':
  
      describe
  
  The following objects are masked from 'package:base':
  
      format.pval, units
  
  Loading required package: SparseM
  
  Attaching package: 'SparseM'
  
  The following object is masked from 'package:base':
  
      backsolve
  
  > library(survival)
  > library(testthat)
  > library(data.table)
  > library(ipw)
  Error: package or namespace load failed for 'ipw' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Execution halted
KM.plot: no visible global function definition for 'lines'
SchoenSmooth: no visible global function definition for 'lm'
llCoxReg: no visible binding for global variable 'time'
risksetAUC: no visible global function definition for 'abline'
risksetROC: no visible global function definition for 'abline'
weightedKM: no visible binding for global variable 'time'
Undefined global functions or variables:
  abline lines lm time
Consider adding
  importFrom("graphics", "abline", "lines")
  importFrom("stats", "lm", "time")
to your NAMESPACE file.
Alg2: no visible global function definition for 'uniroot'
Alg3: no visible global function definition for 'optim'
NVCopula: no visible global function definition for 'rnorm'
NVCopula: no visible global function definition for 'rgamma'
NVCopula: no visible global function definition for 'var'
NVCopula: no visible global function definition for 'cov'
NVCopula: no visible global function definition for 'qnorm'
NVCopulaMT: no visible global function definition for 'rnorm'
NVCopulaMT: no visible global function definition for 'rgamma'
NVCopulaMT: no visible global function definition for 'var'
NVCopulaMT: no visible global function definition for 'cov'
NVCopulaMT: no visible global function definition for 'qnorm'
R2X: no visible global function definition for 'write.table'
ReturnCopula: no visible global function definition for 'qt'
ReturnCopula: no visible global function definition for 'pt'
SISCopula: no visible global function definition for 'runif'
SISCopula: no visible global function definition for 'qnorm'
SISCopula: no visible global function definition for 'rnorm'
SISCopula: no visible global function definition for 'qgamma'
SISCopula: no visible global function definition for 'var'
SISCopula: no visible global function definition for 'cov'
SISCopulaMT: no visible global function definition for 'runif'
SISCopulaMT: no visible global function definition for 'qnorm'
SISCopulaMT: no visible global function definition for 'rnorm'
SISCopulaMT: no visible global function definition for 'qgamma'
SISCopulaMT: no visible global function definition for 'var'
SISCopulaMT: no visible global function definition for 'cov'
Undefined global functions or variables:
  cov optim pt qgamma qnorm qt rgamma rnorm runif uniroot var
  write.table
Consider adding
  importFrom("stats", "cov", "optim", "pt", "qgamma", "qnorm", "qt",
             "rgamma", "rnorm", "runif", "uniroot", "var")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ritis.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'compiler' 'signal'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
NumConv: no visible global function definition for 'pchip'
NumConv: no visible global function definition for 'cmpfun'
NumDeconv: no visible global function definition for 'pchip'
NumDeconv : error_function: no visible global function definition for
  'pchip'
NumDeconv: no visible global function definition for 'cmpfun'
NumDeconv: no visible global function definition for 'optim'
RivivcA: no visible global function definition for 'lm'
Undefined global functions or variables:
  cmpfun lm optim pchip
Consider adding
  importFrom("stats", "lm", "optim")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'publication-reproduction.Rmd' using rmarkdown
--- finished re-building 'publication-reproduction.Rmd'

--- re-building 'quickstart.Rmd' using rmarkdown
Loading required package: rivr
M1 profile specified. Computing upstream profile
Loading required package: ggplot2
Loading required package: dplyr
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Quitting from lines 139-146 (quickstart.Rmd) 
Error: processing vignette 'quickstart.Rmd' failed with diagnostics:
object 'monitor.type' not found
--- failed re-building 'quickstart.Rmd'

--- re-building 'technical-vignette.Rmd' using rmarkdown
--- finished re-building 'technical-vignette.Rmd'

SUMMARY: processing the following file failed:
  'quickstart.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RJafroc.Rcheck/00install.out' for details.
Found the following significant warnings:
  Rinit.c:251:21: warning: assignment to 'blah1' {aka 'int (*)(const char *, char *, int,  int)'} from incompatible pointer type 'int (*)(const char *, unsigned char *, int,  int)' [-Wincompatible-pointer-types]
  Rinit.c:257:21: warning: assignment to 'blah5' {aka 'int (*)(const char *)'} from incompatible pointer type 'int (*)(char *)' [-Wincompatible-pointer-types]
See 'd:/Rcompile/CRANpkg/local/4.0/rJava.Rcheck/00install.out' for details.
Found the following possibly unsafe calls:
File 'rJava/R/import.R':
  unlockBinding(IMPORTER, env = env)
  assignInNamespace(IMPORTER, importer, envir = env)
File 'rJava/R/jinit.R':
  unlockBinding(x, .env)
  unlockBinding(x, pe)
GNU make is a SystemRequirements.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  jri/src/Makefile.win
  jri/src/win32/Makefile
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'd:/Rcompile/CRANpkg/lib/4.0/rJava/libs/i386/rJava.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'd:/Rcompile/CRANpkg/lib/4.0/rJava/libs/x64/rJava.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'rJava/libs/i386/rJava.dll':
  Found non-API call to R: 'R_GlobalContext'
File 'rJava/libs/x64/rJava.dll':
  Found non-API call to R: 'R_GlobalContext'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    java   4.4Mb
installed size is  8.4Mb
File
  LICENSE
is not mentioned in the DESCRIPTION file.
'library' or 'require' call to 'rJava' which was already attached by Depends.
  Please remove these calls from your code.
installed size is 12.1Mb
  sub-directories of 1Mb or more:
    java  12.0Mb
installed size is 10.8Mb
  sub-directories of 1Mb or more:
    java  10.8Mb
installed size is 10.3Mb
  sub-directories of 1Mb or more:
    datasets  10.2Mb
installed size is 23.9Mb
  sub-directories of 1Mb or more:
    exe  23.9Mb
Package vignette with placeholder title 'Vignette Title':
  'rKIN_Introduction.Rmd'
cv.coef: no visible global function definition for 'sd'
normalize.softmax: no visible global function definition for 'plogis'
plot.rknnSupport: no visible global function definition for 'dotchart'
predicted: no visible global function definition for 'influence'
predicted: no visible global function definition for 'fitted'
predicted: no visible global function definition for 'resid'
pressresid: no visible global function definition for 'influence'
pressresid: no visible global function definition for 'resid'
Undefined global functions or variables:
  dotchart fitted influence plogis resid sd
Consider adding
  importFrom("graphics", "dotchart")
  importFrom("stats", "fitted", "influence", "plogis", "resid", "sd")
to your NAMESPACE file.
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    extdata   3.0Mb
Running examples in 'rKolada-Ex.R' failed
The error most likely occurred in:

> ### Name: get_values
> ### Title: Get data from Kolada
> ### Aliases: get_values
> 
> ### ** Examples
> 
> # Download data for KPIs for Gross Regional Product ("BRP" in Swedish)
> # for three municipalities
> grp_kpi <- get_kpi(
+   id = c("N03068", "N03069", "N03070", "N03700", "N03701")
+ ) %>%
+  kpi_search("BRP") %>%
+  kpi_extract_ids()
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: %>% ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'introduction-to-rkolada.Rmd' using rmarkdown
Quitting from lines 58-65 (introduction-to-rkolada.Rmd) 
Error: processing vignette 'introduction-to-rkolada.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'introduction-to-rkolada.Rmd'

--- re-building 'quickstart-rkolada.Rmd' using rmarkdown
Quitting from lines 49-50 (quickstart-rkolada.Rmd) 
Error: processing vignette 'quickstart-rkolada.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'quickstart-rkolada.Rmd'

SUMMARY: processing the following files failed:
  'introduction-to-rkolada.Rmd' 'quickstart-rkolada.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RKorAPClient.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
':::' calls which should be '::':
  'stats:::dexp' 'stats:::dgamma' 'stats:::dweibull' 'stats:::pexp'
  'stats:::pgamma' 'stats:::pweibull' 'stats:::qexp' 'stats:::qgamma'
  'stats:::qweibull' 'stats:::rexp' 'stats:::rgamma' 'stats:::rweibull'
  See the note in ?`:::` about the use of this operator.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rlang.Rcheck/00install.out' for details.
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    libs   4.9Mb
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    libs   7.2Mb
GNU make is a SystemRequirements.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Found the following Makefile(s) without a final LF:
  src/Makevars.in
Some 'make' programs ignore lines not ending in LF.
Package in Depends field not imported from: 'msm'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'EMSRb_internal' 'EM_internal' 'PD_internal'
EMSRb_internal: no visible global function definition for 'qnorm'
EM_internal: no visible global function definition for 'dnorm'
EM_internal: no visible global function definition for 'pnorm'
PD_internal: no visible global function definition for 'qtnorm'
PD_internal: no visible global function definition for 'sd'
Undefined global functions or variables:
  dnorm pnorm qnorm qtnorm sd
Consider adding
  importFrom("stats", "dnorm", "pnorm", "qnorm", "sd")
to your NAMESPACE file.
ma.filter: no visible global function definition for 'par'
ma.filter: no visible global function definition for 'lines'
ma.filter: no visible global function definition for 'abline'
qn: no visible global function definition for 'lm'
qn: no visible global function definition for 'var'
qn: no visible global function definition for 'resid'
ss.filter: no visible global function definition for 'smooth.spline'
ss.filter: no visible global function definition for 'par'
ss.filter: no visible global function definition for 'lines'
ss.filter: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline lines lm par resid smooth.spline var
Consider adding
  importFrom("graphics", "abline", "lines", "par")
  importFrom("stats", "lm", "resid", "smooth.spline", "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rmapzen.Rcheck/00install.out' for details.
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    libs   8.3Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RmarineHeatWaves.Rcheck/00install.out' for details.
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    rmd   8.1Mb
Error(s) in re-building vignettes:
--- re-building 'BlackOil.Rmd' using rmarkdown
Quitting from lines 29-87 (BlackOil.Rmd) 
Error: processing vignette 'BlackOil.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'BlackOil.Rmd'

--- re-building 'DryWetGas.Rmd' using rmarkdown
Quitting from lines 28-86 (DryWetGas.Rmd) 
Error: processing vignette 'DryWetGas.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'DryWetGas.Rmd'

--- re-building 'GasCondensate.Rmd' using rmarkdown
Quitting from lines 28-96 (GasCondensate.Rmd) 
Error: processing vignette 'GasCondensate.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'GasCondensate.Rmd'

--- re-building 'Introduction.Rmd' using rmarkdown
--- finished re-building 'Introduction.Rmd'

--- re-building 'VolatileOil.Rmd' using rmarkdown
Quitting from lines 28-107 (VolatileOil.Rmd) 
Error: processing vignette 'VolatileOil.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'VolatileOil.Rmd'

SUMMARY: processing the following files failed:
  'BlackOil.Rmd' 'DryWetGas.Rmd' 'GasCondensate.Rmd' 'VolatileOil.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rmcfs.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rmda.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rmdcev.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'replace_ampersands.Rmd' using rmarkdown
--- finished re-building 'replace_ampersands.Rmd'

--- re-building 'wordcount.Rmd' using rmarkdown
Quitting from lines 22-25 (wordcount.Rmd) 
Error: processing vignette 'wordcount.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'wordcount.Rmd'

SUMMARY: processing the following file failed:
  'wordcount.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'rmdformats-Ex.R' failed
The error most likely occurred in:

> ### Name: pilltabs
> ### Title: Given a cross-table, outputs HTML code to display several views
> ###   of with a tabbed interface
> ### Aliases: pilltabs
> 
> ### ** Examples
> 
> 
> data(airquality)
> tab <- table(airquality$Month, airquality$Ozone > 25)
> pilltabs(tab)
Error: the questionr package is needed for the pilltabs() function to work. Please install it.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rmdHelpers.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rmetasim.Rcheck/00install.out' for details.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    R      2.1Mb
    libs   2.8Mb
CI: no visible global function definition for 'sd'
CI: no visible global function definition for 'qt'
L: no visible global function definition for 'sd'
L: no visible global function definition for 'residuals'
Qa: no visible global function definition for 'logLik'
Qb: no visible global function definition for 'residuals'
Qc: no visible global function definition for 'residuals'
Qc: no visible global function definition for 'logLik'
STDERR: no visible global function definition for 'sd'
group.UCL: no visible global function definition for 'aggregate'
lr.glover: no visible binding for global variable 'logLik'
lr.glover: no visible binding for global variable 'update'
lr.glover : nobs0: no visible binding for global variable 'nobs'
lr.glover : nobs0 : nobs2: no visible global function definition for
  'residuals'
lr.glover : tlab: no visible global function definition for 'terms'
lr.glover : name: no visible global function definition for 'formula'
lr.glover : modelUpdate: no visible global function definition for
  'as.formula'
lr.glover: no visible global function definition for 'model.frame'
lr.glover: no visible binding for global variable 'AIC'
lr.glover: no visible binding for global variable 'BIC'
summarySE : <anonymous>: no visible global function definition for 'sd'
summarySE: no visible global function definition for 'qt'
Undefined global functions or variables:
  AIC BIC aggregate as.formula formula logLik model.frame nobs qt
  residuals sd terms update
Consider adding
  importFrom("stats", "AIC", "BIC", "aggregate", "as.formula", "formula",
             "logLik", "model.frame", "nobs", "qt", "residuals", "sd",
             "terms", "update")
to your NAMESPACE file.
Combi: no visible global function definition for 'new'
barplotMixCluster: no visible global function definition for 'is'
barplotMixCluster: no visible global function definition for 'par'
barplotMixCluster: no visible global function definition for 'lines'
barplotMixCluster: no visible global function definition for 'text'
barplotMixCluster: no visible global function definition for 'title'
barplotMixCluster: no visible global function definition for 'mtext'
histMixCluster: no visible global function definition for 'is'
histMixCluster: no visible global function definition for 'par'
histMixCluster: no visible global function definition for 'dnorm'
histMixCluster: no visible global function definition for 'lines'
mixmodEntPlot: no visible global function definition for 'par'
mixmodEntPlot: no visible global function definition for 'lines'
mixmodEntPlot: no visible global function definition for 'axis'
mixmodEntPlot: no visible global function definition for 'title'
mixmodEntPlot: no visible binding for global variable 'par'
plot,MixmodCombi: no visible global function definition for 'par'
plot,MixmodCombi: no visible global function definition for 'plot.new'
plot,MixmodCombi: no visible global function definition for 'title'
Undefined global functions or variables:
  axis dnorm is lines mtext new par plot.new text title
Consider adding
  importFrom("graphics", "axis", "lines", "mtext", "par", "plot.new",
             "text", "title")
  importFrom("methods", "is", "new")
  importFrom("stats", "dnorm")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RMixtComp.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RMixtCompUtilities.Rcheck/00install.out' for details.
.pLGP_qvec: no visible global function definition for 'ppois'
.qLGP_pvec: no visible global function definition for 'qpois'
.rLGP.failsafe: no visible global function definition for 'runif'
.subdmg: no visible global function definition for 'dbinom'
dnegbin: no visible global function definition for 'dnbinom'
pLGP: no visible global function definition for 'ppois'
qLGP: no visible global function definition for 'qpois'
rLGP: no visible global function definition for 'rpois'
rLGP: no visible global function definition for 'rnorm'
rLGP: no visible global function definition for 'runif'
rbinegbin: no visible global function definition for 'rnbinom'
rmanaclash: no visible global function definition for 'rbinom'
rmanaclash: no visible global function definition for 'runif'
Undefined global functions or variables:
  dbinom dnbinom ppois qpois rbinom rnbinom rnorm rpois runif
Consider adding
  importFrom("stats", "dbinom", "dnbinom", "ppois", "qpois", "rbinom",
             "rnbinom", "rnorm", "rpois", "runif")
to your NAMESPACE file.
Running examples in 'RMKL-Ex.R' failed
The error most likely occurred in:

> ### Name: SVM.nfoldcv
> ### Title: Cross validation for SVM
> ### Aliases: SVM.nfoldcv
> 
> ### ** Examples
> 
> data(benchmark.data)
> example.data=benchmark.data[[1]]
> training.samples=sample(1:nrow(example.data), floor(0.7*nrow(example.data)),replace=FALSE)
> C=2^c(-1,1)
> #Find the best cost parameter within the provided range if a linear kernel is used
> SVM.nfoldcv(example.data[,1:2], as.factor(example.data[,3]),training.samples,C,
+             'linear',0,0,0,nfold=3)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: SVM.nfoldcv ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Running examples in 'rModeling-Ex.R' failed
The error most likely occurred in:

> ### Name: crossValidation
> ### Title: Conduct cross-validation
> ### Aliases: crossValidation
> 
> ### ** Examples
> 
>   data(DATA)
>   ### perform batch-wise cross-validation using the function fnPcaLda
>   RES3 <- crossValidation(data=DATA$spec
+                           ,label=DATA$labels
+                           ,batch=DATA$batch
+                           ,method=fnPcaLda
+                           ,pred=predPcaLda
+                           ,folds=NULL 
+                           ,nBatch=0
+                           ,nFold=3
+                           ,verbose=TRUE     
+                           ,seed=NULL
+                           
+                           ### parameters to be passed to fnPcaLda
+                           ,center=TRUE
+                           ,scale=FALSE
+    )
[1] "BV 3"
[1] "BV: data split finished"
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: crossValidation ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'cheatsheet.Rmd' using rmarkdown
--- finished re-building 'cheatsheet.Rmd'

--- re-building 'gff-processing.Rmd' using rmarkdown
Quitting from lines 102-131 (gff-processing.Rmd) 
Error: processing vignette 'gff-processing.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'gff-processing.Rmd'

--- re-building 'introduction.Rmd' using rmarkdown
--- finished re-building 'introduction.Rmd'

--- re-building 'nozzle.Rmd' using rmarkdown
--- finished re-building 'nozzle.Rmd'

SUMMARY: processing the following file failed:
  'gff-processing.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rMorningStar.Rcheck/00install.out' for details.
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    libs   5.6Mb
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rmsfuns.Rcheck/00install.out' for details.
rms.pval: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Package vignette with placeholder title 'Vignette Title':
  'rmtl.Rmd'
dWishartSpike: no visible global function definition for 'dnorm'
pWishartSpike: no visible global function definition for 'pnorm'
qWishartSpike: no visible global function definition for 'qnorm'
rWishartSpike: no visible global function definition for 'qnorm'
rmp: no visible global function definition for 'runif'
rtw: no visible global function definition for 'runif'
Undefined global functions or variables:
  dnorm pnorm qnorm runif
Consider adding
  importFrom("stats", "dnorm", "pnorm", "qnorm", "runif")
to your NAMESPACE file.
installed size is  8.9Mb
  sub-directories of 1Mb or more:
    libs   8.6Mb
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rmweather.Rcheck/00install.out' for details.
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    libs   6.2Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rmytarget.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RNAseqNet.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' calls in package code:
  'DESeq' 'seqinr' 'topGO'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package suggested but not available for checking: 'rnaturalearthhires'
installed size is 12.1Mb
  sub-directories of 1Mb or more:
    java  12.1Mb
Malformed Title field: should not end in a period.
installed size is  9.3Mb
  sub-directories of 1Mb or more:
    libs   9.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RNeXML.Rcheck/00install.out' for details.
well19937.validate: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RNHANES.Rcheck/00install.out' for details.
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    doxygen   1.6Mb
    libs      3.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RNiftyReg.Rcheck/00install.out' for details.
Nnls.trimW : fun1: no visible global function definition for 'runif'
initM: no visible global function definition for 'runif'
rnmf: no visible global function definition for 'txtProgressBar'
rnmf: no visible global function definition for 'setTxtProgressBar'
see: no visible global function definition for 'heat.colors'
see: no visible global function definition for 'colorRampPalette'
see: no visible global function definition for 'grey'
see: no visible global function definition for 'par'
see: no visible global function definition for 'image'
see: no visible global function definition for 'mtext'
simtum: no visible global function definition for 'runif'
simtum: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  colorRampPalette grey heat.colors image mtext par rnorm runif
  setTxtProgressBar txtProgressBar
Consider adding
  importFrom("grDevices", "colorRampPalette", "grey", "heat.colors")
  importFrom("graphics", "image", "mtext", "par")
  importFrom("stats", "rnorm", "runif")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rnoaa.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rnrfa.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Rnumerai.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/roadoi.Rcheck/00install.out' for details.
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   2.8Mb
    doc    1.7Mb
installed size is 11.3Mb
  sub-directories of 1Mb or more:
    R  11.2Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/robCompositions.Rcheck/00install.out' for details.
'library' or 'require' calls in package code:
  'robustbase' 'sfsmisc'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
.BuildPartial: no visible global function definition for 'as.formula'
.BuildPartial: no visible global function definition for 'residuals'
.PairwiseCorrelation : .Standardize : <anonymous>: no visible global
  function definition for 'na.omit'
.PairwiseCorrelation : .Standardize: no visible binding for global
  variable 'median'
.PairwiseCorrelation: no visible global function definition for
  'complete.cases'
.yw: no visible global function definition for 'toeplitz'
FastQn: no visible global function definition for 'median'
FastQn: no visible global function definition for 'mad'
fqn: no visible global function definition for 'median'
fqn: no visible global function definition for 'mad'
psdcor: no visible global function definition for 'posdefify'
psdcor: no visible global function definition for 'nearcor'
robar: no visible global function definition for 'frequency'
robcor: no visible global function definition for 'covMcd'
s_FastQn: no visible global function definition for 'median'
Undefined global functions or variables:
  as.formula complete.cases covMcd frequency mad median na.omit nearcor
  posdefify residuals toeplitz
Consider adding
  importFrom("stats", "as.formula", "complete.cases", "frequency", "mad",
             "median", "na.omit", "residuals", "toeplitz")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/robis.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RobMixReg.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'using_robotstxt.Rmd' using rmarkdown

 google.com                      


 google.com                      

Quitting from lines 63-65 (using_robotstxt.Rmd) 
Error: processing vignette 'using_robotstxt.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'using_robotstxt.Rmd'

SUMMARY: processing the following file failed:
  'using_robotstxt.Rmd'

Error: Vignette re-building failed.
Execution halted
RobRSVD: no visible global function definition for 'median'
Undefined global functions or variables:
  median
Consider adding
  importFrom("stats", "median")
to your NAMESPACE file.
'LinkingTo' for 'mgcv' is unused as it has no 'include' directory
Packages in Depends field not imported from:
  'Rcpp' 'RcppArmadillo' 'mgcv' 'robustbase'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
GIC: no visible global function definition for 'integrate'
QM.poisson: no visible global function definition for 'ppois'
QM.poisson: no visible global function definition for 'dpois'
expect.poisson: no visible global function definition for 'dpois'
expect.poisson: no visible global function definition for 'ppois'
pred.robustgam: no visible global function definition for
  'Predict.matrix'
robust.sigma: no visible global function definition for 'median'
robustgam: no visible global function definition for 's'
robustgam: no visible global function definition for
  'smooth.construct.tp.smooth.spec'
robustgam: no visible global function definition for
  'smooth.construct.cr.smooth.spec'
robustgam: no visible global function definition for
  'smooth.construct.ps.smooth.spec'
robustgam : w.fun: no visible global function definition for 'covMcd'
robustgam.GIC.optim: no visible global function definition for 'optim'
robustgam.crossval : w.fun: no visible global function definition for
  'covMcd'
robustgam.crossval: no visible global function definition for
  'integrate'
smooth.construct.tr.smooth.spec: no visible global function definition
  for 'quantile'
w.binomial: no visible global function definition for 'pbinom'
w.poisson: no visible global function definition for 'ppois'
Undefined global functions or variables:
  Predict.matrix covMcd dpois integrate median optim pbinom ppois
  quantile s smooth.construct.cr.smooth.spec
  smooth.construct.ps.smooth.spec smooth.construct.tp.smooth.spec
Consider adding
  importFrom("stats", "dpois", "integrate", "median", "optim", "pbinom",
             "ppois", "quantile")
to your NAMESPACE file.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    libs   4.2Mb
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
aggregateRanks: no visible binding for global variable 'median'
aggregateRanks: no visible global function definition for 'pnorm'
betaScores: no visible global function definition for 'pbeta'
correctBetaPvaluesExact: no visible binding for global variable 'qbeta'
thresholdBetaScore: no visible global function definition for 'pbeta'
Undefined global functions or variables:
  median pbeta pnorm qbeta
Consider adding
  importFrom("stats", "median", "pbeta", "pnorm", "qbeta")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/robustSingleCell.Rcheck/00install.out' for details.
Running examples in 'robvis-Ex.R' failed
The error most likely occurred in:

> ### Name: rob_summary
> ### Title: Produce summary weighted barplots of risk-of-bias assessments.
> ### Aliases: rob_summary
> 
> ### ** Examples
> 
> 
> data <- data.frame(stringsAsFactors=FALSE,
+                    Study = c("Study 1", "Study 2"),
+                    D1 = c("Low", "Some concerns"),
+                    D2 = c("Low", "Low"),
+                    D3 = c("Low", "Low"),
+                    D4 = c("Low", "Low"),
+                    D5 = c("Low", "Low"),
+                    Overall = c("Low", "Low"),
+                    Weight = c(33.33333333, 33.33333333)
+                    )
> 
> rob_summary(data, "ROB2")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: rob_summary
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Introduction_to_robvis.Rmd' using rmarkdown
Quitting from lines 90-91 (Introduction_to_robvis.Rmd) 
Error: processing vignette 'Introduction_to_robvis.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Introduction_to_robvis.Rmd'

SUMMARY: processing the following file failed:
  'Introduction_to_robvis.Rmd'

Error: Vignette re-building failed.
Execution halted
Malformed Title field: should not end in a period.
Running examples in 'rock-Ex.R' failed
The error most likely occurred in:

> ### Name: apply_graph_theme
> ### Title: Apply multiple DiagrammeR global graph attributes
> ### Aliases: apply_graph_theme
> 
> ### ** Examples
> 
> exampleSource <- '
+ ---
+ codes:
+   -
+     id: parentCode
+     label: Parent code
+     children:
+       -
+         id: childCode1
+       -
+         id: childCode2
+   -
+     id: childCode3
+     label: Child Code
+     parentId: parentCode
+     children: [grandChild1, grandChild2]
+ ---
+ ';
> parsedSource <-
+   parse_source(text=exampleSource);
> miniGraph <-
+   apply_graph_theme(data.tree::ToDiagrammeRGraph(parsedSource$deductiveCodeTrees),
+                     c("color", "#0000AA", "node"),
+                     c("shape", "triangle", "node"),
+                     c("fontcolor", "#FF0000", "node"));
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: apply_graph_theme ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rocTree.Rcheck/00install.out' for details.
NPROCwoGS: no visible global function definition for 'quantile'
NPROCwoGS : rdirichlet: no visible global function definition for
  'rgamma'
NPROCwoGS: no visible global function definition for 'rbinom'
NPROCwoGS: no visible global function definition for 'rbeta'
NPROCwoGS: no visible binding for global variable 'quantile'
Undefined global functions or variables:
  quantile rbeta rbinom rgamma
Consider adding
  importFrom("stats", "quantile", "rbeta", "rbinom", "rgamma")
to your NAMESPACE file.
prepare_Rd: score.Rd:20-22: Dropping empty section \details
prepare_Rd: score.Rd:23-25: Dropping empty section \source
prepare_Rd: score.Rd:26-28: Dropping empty section \references
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'RODBC'
A package should be listed in only one of these fields.
'library' or 'require' call to 'RODBC' which was already attached by Depends.
  Please remove these calls from your code.
Package required but not available: 'Rcplex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rollmatch.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    R         2.7Mb
    extdata   2.7Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rolypoly.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ROMDB.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ropenaq.Rcheck/00install.out' for details.
Running 'someFIGIs.R' [2s]
Running the tests in 'tests/someFIGIs.R' failed.
Complete output:
  > library(ROpenFIGI)
  > jsondf <- data.frame(idType=c("ID_ISIN"),idValue=c("US922646AS37"),
  +                      exchCode=c(NA),currency=NA,micCode=NA,stringsAsFactors = F)
  > 
  > jsonrst <- OpenFIGI(jsondf)
  > jsonrst
  [[1]]
            figi                  name             ticker exchCode compositeFIGI
  1 BBG00004SPH6 REPUBLIC OF VENEZUELA VENZ 9.25 09/15/27  EUROTLX            NA
       uniqueID securityType marketSector shareClassFIGI uniqueIDFutOpt
  1 COTT3359474       GLOBAL         Govt             NA             NA
    securityType2 securityDescription
  1          Govt VENZ 9 1/4 09/15/27
  
  > 
  > library(dplyr)
  Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ropercenter.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/roptions.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0gcc8/ROracle.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rorqual.morpho.Rcheck/00install.out' for details.
ROSE.eval: no visible global function definition for 'methods'
ROSE.eval: no visible binding for global variable 'model.frame'
ROSE.eval: no visible binding for global variable 'predict'
adj.formula: no visible global function definition for 'terms'
adj.formula: no visible global function definition for 'as.formula'
omnibus.balancing: no visible binding for global variable 'model.frame'
ou.sampl: no visible global function definition for 'rbinom'
over.sampl: no visible global function definition for 'rbinom'
roc.curve: no visible global function definition for 'lines'
roc.curve: no visible global function definition for 'abline'
rose.real: no visible binding for global variable 'sd'
rose.real: no visible global function definition for 'sd'
rose.real: no visible global function definition for 'rnorm'
rose.sampl: no visible global function definition for 'rbinom'
under.sampl: no visible global function definition for 'rbinom'
Undefined global functions or variables:
  abline as.formula lines methods model.frame predict rbinom rnorm sd
  terms
Consider adding
  importFrom("graphics", "abline", "lines")
  importFrom("stats", "as.formula", "model.frame", "predict", "rbinom",
             "rnorm", "sd", "terms")
  importFrom("utils", "methods")
to your NAMESPACE file.
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    R      1.1Mb
    data   2.7Mb
    libs   2.9Mb
bestFM: no visible global function definition for 'data'
gaRoth: no visible global function definition for 'data'
ros: no visible global function definition for 'na.omit'
rosunc: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  data na.omit rnorm
Consider adding
  importFrom("stats", "na.omit", "rnorm")
  importFrom("utils", "data")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'data_mashups.Rmd' using rmarkdown
Quitting from lines 151-155 (data_mashups.Rmd) 
Error: processing vignette 'data_mashups.Rmd' failed with diagnostics:
package 'phylobase' is not installed for 'arch = x64'
--- failed re-building 'data_mashups.Rmd'

--- re-building 'meta-analysis.Rmd' using rmarkdown
--- finished re-building 'meta-analysis.Rmd'

--- re-building 'rotl.Rmd' using rmarkdown
--- finished re-building 'rotl.Rmd'

SUMMARY: processing the following file failed:
  'data_mashups.Rmd'

Error: Vignette re-building failed.
Execution halted
.computeValueReduct: no visible global function definition for 'combn'
.findAllReductsFromCore: no visible global function definition for
  'combn'
.findFirstReductsFromCore: no visible global function definition for
  'combn'
.findSmallestReductFamilyFromCore: no visible global function
  definition for 'combn'
Undefined global functions or variables:
  combn
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
royston.test: no visible global function definition for 'shapiro.test'
royston.test: no visible global function definition for 'cor'
royston.test: no visible global function definition for 'qnorm'
royston.test: no visible global function definition for 'pnorm'
royston.test: no visible global function definition for 'cov'
royston.test: no visible global function definition for 'mahalanobis'
royston.test: no visible global function definition for 'qqplot'
royston.test: no visible global function definition for 'qchisq'
royston.test: no visible global function definition for 'ppoints'
royston.test: no visible global function definition for 'abline'
royston.test: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  abline cor cov mahalanobis pchisq pnorm ppoints qchisq qnorm qqplot
  shapiro.test
Consider adding
  importFrom("graphics", "abline")
  importFrom("stats", "cor", "cov", "mahalanobis", "pchisq", "pnorm",
             "ppoints", "qchisq", "qnorm", "qqplot", "shapiro.test")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rPackedBar.Rcheck/00install.out' for details.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    R       2.1Mb
    libs    2.2Mb
    tests   1.3Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rPAex.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'hash'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
P: no visible global function definition for 'has.key'
get_rand_int: no visible global function definition for 'runif'
last: no visible global function definition for 'tail'
rand_partitions: no visible global function definition for 'hash'
Undefined global functions or variables:
  has.key hash runif tail
Consider adding
  importFrom("stats", "runif")
  importFrom("utils", "tail")
to your NAMESPACE file.
evalMedian: no visible global function definition for 'xtabs'
evalMode: no visible global function definition for 'xtabs'
rpartScore: no visible global function definition for 'model.extract'
rpartScore: no visible global function definition for 'var'
rpartScore: no visible binding for global variable 'var'
splitAbs: no visible global function definition for 'xtabs'
Undefined global functions or variables:
  model.extract var xtabs
Consider adding
  importFrom("stats", "model.extract", "var", "xtabs")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
'library' or 'require' call to 'RODBC' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
rpart.rules.push: no visible global function definition for 'sqlSave'
rpart.rules.table : <anonymous>: no visible global function definition
  for 'setNames'
rpart.subrules.table : <anonymous>: no visible global function
  definition for 'setNames'
Undefined global functions or variables:
  setNames sqlSave
Consider adding
  importFrom("stats", "setNames")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rpcdsearch.Rcheck/00install.out' for details.
'library' or 'require' calls to packages already attached by Depends:
  'MASS' 'survival'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'MASS' 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
GenerateData: no visible global function definition for 'mvrnorm'
GetVarImp : FitPenalizedModel: no visible global function definition
  for 'clogit'
Undefined global functions or variables:
  clogit mvrnorm
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    libs   6.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Rphylopars.Rcheck/00install.out' for details.
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(rpivotTable)
  > 
  > test_check("rpivotTable")
  -- 1. Error: (unknown) (@test_data.R#3)  ---------------------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 14 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test_data.R#3) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'NEWS.Rmd' using rmarkdown
--- finished re-building 'NEWS.Rmd'

--- re-building 'rpivotTableIntroduction.Rmd' using rmarkdown
Quitting from lines 103-110 (rpivotTableIntroduction.Rmd) 
Error: processing vignette 'rpivotTableIntroduction.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'rpivotTableIntroduction.Rmd'

SUMMARY: processing the following file failed:
  'rpivotTableIntroduction.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rplos.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'usage.Rmd' using knitr
Quitting from lines 111-129 (usage.Rmd) 
Error: processing vignette 'usage.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'usage.Rmd'

SUMMARY: processing the following file failed:
  'usage.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data   2.3Mb
    libs   2.5Mb
Error(s) in re-building vignettes:
--- re-building 'Rpolyhedra.Rmd' using rmarkdown
Quitting from lines 23-27 (Rpolyhedra.Rmd) 
Error: processing vignette 'Rpolyhedra.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Rpolyhedra.Rmd'

SUMMARY: processing the following file failed:
  'Rpolyhedra.Rmd'

Error: Vignette re-building failed.
Execution halted
Missing or unexported object: 'mapview::popupTable'
Found the following significant warnings:
  fe-protocol2.c:1615:2: warning: 'strncpy' specified bound 32 equals destination size [-Wstringop-truncation]
  fe-protocol2.c:1616:2: warning: 'strncpy' specified bound 64 equals destination size [-Wstringop-truncation]
  fe-protocol2.c:1620:3: warning: 'strncpy' specified bound 64 equals destination size [-Wstringop-truncation]
See 'd:/Rcompile/CRANpkg/local/4.0/RPostgreSQL.Rcheck/00install.out' for details.
Found a 'configure.in' file: 'configure.ac' has long been preferred.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  src/libpq/Makefile.win
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    libs   8.4Mb
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    extdata   4.5Mb
Running examples in 'rPraat-Ex.R' failed
The error most likely occurred in:

> ### Name: tg.createNewTextGrid
> ### Title: tg.createNewTextGrid
> ### Aliases: tg.createNewTextGrid
> 
> ### ** Examples
> 
> tg <- tg.createNewTextGrid(0, 5)
> tg <- tg.insertNewIntervalTier(tg, 1, "word")
> tg <- tg.insertInterval(tg, "word", 1, 2, "hello")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: tg.insertInterval ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [17s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(rPraat)
  > 
  > test_check("rPraat")
  -- 1. Error: tg.write (@test_rpraat.R#763)  ------------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_equal(...)
    4. rPraat::tg.insertInterval(tg, 1, 0.8, 1.5, "sag")
    5. dplyr::between
    6. base::getExportedValue(pkg, name)
    7. base::asNamespace(ns)
    8. base::getNamespace(ns)
    9. base::loadNamespace(name)
   10. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: tg.insertNewIntervalTier, tg.insertBoundary, tg.insertInterval, tg.
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_equal(...)
    4. rPraat::tg.insertInterval(tg2, "INTERVALS", 1.2, 2.5, "Interval B")
    5. dplyr::between
    6. base::getExportedValue(pkg, name)
    7. base::asNamespace(ns)
    8. base::getNamespace(ns)
    9. base::loadNamespace(name)
   10. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 474 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: tg.write (@test_rpraat.R#763) 
  2. Error: tg.insertNewIntervalTier, tg.insertBoundary, tg.insertInterval, tg.insertNewPointTier (@test_rpraat.R#802) 
  
  Error: testthat unit tests failed
  Execution halted
Running examples in 'rpredictit-Ex.R' failed
The error most likely occurred in:

> ### Name: all_markets
> ### Title: Get bids and asks for all 'PredictIt' markets
> ### Aliases: all_markets
> 
> ### ** Examples
> 
> markets <- all_markets()
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: all_markets ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'rpredictit-vignette.Rmd' using rmarkdown
Quitting from lines 47-48 (rpredictit-vignette.Rmd) 
Error: processing vignette 'rpredictit-vignette.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'rpredictit-vignette.Rmd'

SUMMARY: processing the following file failed:
  'rpredictit-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rPref.Rcheck/00install.out' for details.
Running 'testthat.R' [14s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # Copyright (c) Facebook, Inc. and its affiliates.
  > # All rights reserved.
  > #
  > # This source code is licensed under the BSD-style license found in the
  > # LICENSE file in the root directory of this source tree.
  > 
  > library("testthat")
  > library("DBI")
  > library("RPresto")
  > 
  > test_check("RPresto")
  -- 1. Error: `[[` works for char/numeric indices (@test-translate_sql.R#174)  --
  translate_sql requires the dbplyr package, please install it first and try again
  Backtrace:
   1. RPresto:::dbplyr_compatible("translate_sql")
  
  -- 2. Error: `[[` works for dynamic indices (@test-translate_sql.R#212)  -------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. dplyr::tbl
   2. base::getExportedValue(pkg, name)
   3. base::asNamespace(ns)
   4. base::getNamespace(ns)
   5. base::loadNamespace(name)
   6. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 271 | SKIPPED: 32 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: `[[` works for char/numeric indices (@test-translate_sql.R#174) 
  2. Error: `[[` works for dynamic indices (@test-translate_sql.R#212) 
  
  Error: testthat unit tests failed
  Execution halted
Running 'testthat.R' [8s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(rprev)
  Loading required package: survival
  > 
  > test_check("rprev")
  -- 1. Error: predict_survival_probability produces correct survival estimates (@
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. rprev:::test_surv(...)
    2. flexsurv::flexsurvreg
    3. base::getExportedValue(pkg, name)
    4. base::asNamespace(ns)
    5. base::getNamespace(ns)
    6. base::loadNamespace(name)
    9. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   12. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   13. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 136 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: predict_survival_probability produces correct survival estimates (@test_survival_model.R#93) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'diagnostics.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Loading required package: survival
Loading required package: Hmisc
Loading required package: lattice
Loading required package: Formula

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, units

Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

Quitting from lines 215-216 (diagnostics.Rmd) 
Error: processing vignette 'diagnostics.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'diagnostics.Rmd'

--- re-building 'user_guide.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Loading required package: survival
Quitting from lines 117-119 (user_guide.Rmd) 
Error: processing vignette 'user_guide.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'user_guide.Rmd'

SUMMARY: processing the following files failed:
  'diagnostics.Rmd' 'user_guide.Rmd'

Error: Vignette re-building failed.
Execution halted
but_last: no visible global function definition for 'head'
first: no visible global function definition for 'head'
last: no visible global function definition for 'tail'
preview_frames: no visible global function definition for 'str'
print.EprimeFrame: no visible global function definition for 'str'
print.FrameList: no visible global function definition for 'str'
Undefined global functions or variables:
  head str tail
Consider adding
  importFrom("utils", "head", "str", "tail")
to your NAMESPACE file.
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    libs   6.2Mb
Error(s) in re-building vignettes:
--- re-building 'rpsftm_vignette.Rmd' using rmarkdown
Quitting from lines 98-105 (rpsftm_vignette.Rmd) 
Error: processing vignette 'rpsftm_vignette.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'rpsftm_vignette.Rmd'

SUMMARY: processing the following file failed:
  'rpsftm_vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Rpvt.Rmd' using rmarkdown
Quitting from lines 115-172 (Rpvt.Rmd) 
Error: processing vignette 'Rpvt.Rmd' failed with diagnostics:
package or namespace load failed for 'ggpubr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Rpvt.Rmd'

SUMMARY: processing the following file failed:
  'Rpvt.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'CoupledHarmonics.Rmd' using rmarkdown
Quitting from lines 16-19 (CoupledHarmonics.Rmd) 
Error: processing vignette 'CoupledHarmonics.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'CoupledHarmonics.Rmd'

--- re-building 'CoupledHarmonics2.Rmd' using rmarkdown
Quitting from lines 16-19 (CoupledHarmonics2.Rmd) 
Error: processing vignette 'CoupledHarmonics2.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'CoupledHarmonics2.Rmd'

--- re-building 'CoupledTwoLevelSystems.Rmd' using rmarkdown
--- finished re-building 'CoupledTwoLevelSystems.Rmd'

SUMMARY: processing the following files failed:
  'CoupledHarmonics.Rmd' 'CoupledHarmonics2.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is 27.4Mb
  sub-directories of 1Mb or more:
    libs  26.8Mb
Error(s) in re-building vignettes:
--- re-building 'RelativePermeability.Rmd' using rmarkdown
Quitting from lines 29-78 (RelativePermeability.Rmd) 
Error: processing vignette 'RelativePermeability.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'RelativePermeability.Rmd'

SUMMARY: processing the following file failed:
  'RelativePermeability.Rmd'

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  Warning: namespace 'dplyr' is not available and has been replaced
See 'd:/Rcompile/CRANpkg/local/4.0/rrepast.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rrlda.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rRofex.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rrr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rrtable.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'robustbase' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
.computekappa: no visible global function definition for 'pnorm'
.computekappa: no visible global function definition for 'dnorm'
.initmethod : <anonymous>: no visible global function definition for
  'median'
.initmethod: no visible global function definition for 'model.matrix'
.mspe: no visible global function definition for 'rnorm'
.mspe : <anonymous>: no visible global function definition for 'rnorm'
makedata: no visible global function definition for 'rnorm'
makedata : addraneff: no visible global function definition for 'rnorm'
plot.meanssaemodel: no visible global function definition for 'par'
plot.meanssaemodel: no visible global function definition for 'lines'
plot.meanssaemodel: no visible global function definition for 'axis'
plot.meanssaemodel: no visible global function definition for 'grid'
plot.meanssaemodel: no visible global function definition for 'box'
plot.meanssaemodel: no visible global function definition for 'legend'
plot.meanssaemodel: no visible global function definition for 'arrows'
saemodel: no visible global function definition for 'model.frame'
saemodel: no visible global function definition for 'model.response'
saemodel: no visible global function definition for 'model.matrix'
summary.fitsaemodel: no visible global function definition for 'pt'
summary.fitsaemodel: no visible global function definition for
  'printCoefmat'
Undefined global functions or variables:
  arrows axis box dnorm grid legend lines median model.frame
  model.matrix model.response par pnorm printCoefmat pt rnorm
Consider adding
  importFrom("graphics", "arrows", "axis", "box", "grid", "legend",
             "lines", "par")
  importFrom("stats", "dnorm", "median", "model.frame", "model.matrix",
             "model.response", "pnorm", "printCoefmat", "pt", "rnorm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rsample.Rcheck/00install.out' for details.
stripslash: no visible global function definition for 'tail'
Undefined global functions or variables:
  tail
Consider adding
  importFrom("utils", "tail")
to your NAMESPACE file.
Found the following significant warnings:
  cli.c:232:44: warning: passing argument 4 of 'setsockopt' from incompatible pointer type [-Wincompatible-pointer-types]
See 'd:/Rcompile/CRANpkg/local/4.0/RSclient.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rscopus.Rcheck/00install.out' for details.
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(rscorecard)
  > 
  > test_check("rscorecard")
  -- 1. Error: Dictionary does not return correct object (@test-dictionary.R#6)  -
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. tidyr::tibble
   2. base::getExportedValue(pkg, name)
   3. base::asNamespace(ns)
   4. base::getNamespace(ns)
   5. base::loadNamespace(name)
   8. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   9. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 90 | SKIPPED: 9 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: Dictionary does not return correct object (@test-dictionary.R#6) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RSDA.Rcheck/00install.out' for details.
convexhull: no visible global function definition for 'chull'
convexhull: no visible global function definition for 'rnorm'
drawcompletegraph: no visible global function definition for 'segments'
getbag: no visible global function definition for 'chull'
getbag: no visible global function definition for 'polygon'
getbag: no visible global function definition for 'points'
inflate: no visible global function definition for 'rnorm'
rsmed: no visible global function definition for 'runif'
rsplot: no visible global function definition for 'chull'
rsplot: no visible global function definition for 'polygon'
rsplot: no visible global function definition for 'points'
rsrings: no visible global function definition for 'chull'
rsrings: no visible global function definition for 'polygon'
rsrings: no visible global function definition for 'points'
rstinterval: no visible global function definition for 'runif'
rstinterval: no visible global function definition for 'rnorm'
rstinterval: no visible global function definition for 'chull'
rstinterval: no visible global function definition for 'polygon'
Undefined global functions or variables:
  chull points polygon rnorm runif segments
Consider adding
  importFrom("grDevices", "chull")
  importFrom("graphics", "points", "polygon", "segments")
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Package suggested but not available for checking: 'Rcompression'
Found the following significant warnings:
  RSserver.c:64:44: warning: passing argument 4 of 'setsockopt' from incompatible pointer type [-Wincompatible-pointer-types]
   #warning Please include winsock2.h before windows.h
  qap_decode.c:200:41: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  qap_decode.c:200:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  qap_decode.c:238:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  qap_decode.c:238:55: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  qap_decode.c:244:39: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  qap_decode.c:244:60: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
See 'd:/Rcompile/CRANpkg/local/4.0/Rserve.Rcheck/00install.out' for details.
Rserve: no visible global function definition for 'shortPathName'
Undefined global functions or variables:
  shortPathName
Consider adding
  importFrom("utils", "shortPathName")
to your NAMESPACE file.
GNU make is a SystemRequirements.
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'd:/Rcompile/CRANpkg/lib/4.0/Rserve/libs/i386/Rserve.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'rand', possibly from 'rand' (C)
  Found 'srand', possibly from 'srand' (C)
File 'd:/Rcompile/CRANpkg/lib/4.0/Rserve/libs/x64/Rserve.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'rand', possibly from 'rand' (C)
  Found 'srand', possibly from 'srand' (C)
File 'Rserve/libs/i386/Rserve.dll':
  Found non-API calls to R: 'R_Interactive', 'Rf_initialize_R',
    'setup_Rmainloop'
File 'Rserve/libs/x64/Rserve.dll':
  Found non-API calls to R: 'R_Interactive', 'Rf_initialize_R',
    'setup_Rmainloop'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
addNoisyCopies: no visible global function definition for 'rnorm'
eta: no visible global function definition for 'var'
gaussClassifier: no visible global function definition for 'runif'
getSigma: no visible global function definition for 'sd'
getSigma: no visible binding for global variable 'sd'
sfaClassify: no visible global function definition for 'rainbow'
sfaClassify: no visible global function definition for 'par'
sfaClassify: no visible global function definition for 'points'
sfaClassify: no visible global function definition for 'lines'
Undefined global functions or variables:
  lines par points rainbow rnorm runif sd var
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "lines", "par", "points")
  importFrom("stats", "rnorm", "runif", "sd", "var")
to your NAMESPACE file.
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    libs   4.1Mb
Error(s) in re-building vignettes:
--- re-building 'A-introduction.Rmd' using rmarkdown
--- finished re-building 'A-introduction.Rmd'

--- re-building 'B-relhaz.Rmd' using rmarkdown
--- finished re-building 'B-relhaz.Rmd'

--- re-building 'C-plotting.Rmd' using rmarkdown
--- finished re-building 'C-plotting.Rmd'

--- re-building 'D-nlp.Rmd' using rmarkdown
--- finished re-building 'D-nlp.Rmd'

--- re-building 'E-custom-inputs.Rmd' using rmarkdown
--- finished re-building 'E-custom-inputs.Rmd'

--- re-building 'F-rsimsumtidyverse.Rmd' using rmarkdown
Quitting from lines 25-29 (F-rsimsumtidyverse.Rmd) 
Error: processing vignette 'F-rsimsumtidyverse.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'F-rsimsumtidyverse.Rmd'

SUMMARY: processing the following file failed:
  'F-rsimsumtidyverse.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rsinaica.Rcheck/00install.out' for details.
Found the following significant warnings:
  kr_io.cpp:891:9: warning: 'char* strcat(char*, const char*)' accessing 631 or more bytes at offsets 6607 and 7237 may overlap 1 byte at offset 7237 [-Wrestrict]
  kr_io.cpp:868:9: warning: 'char* strcat(char*, const char*)' accessing 631 or more bytes at offsets 6607 and 7237 may overlap 1 byte at offset 7237 [-Wrestrict]
  kr_io.cpp:891:9: warning: 'char* strcat(char*, const char*)' accessing 631 or more bytes at offsets 6719 and 7349 may overlap 1 byte at offset 7349 [-Wrestrict]
  kr_io.cpp:868:9: warning: 'char* strcat(char*, const char*)' accessing 631 or more bytes at offsets 6719 and 7349 may overlap 1 byte at offset 7349 [-Wrestrict]
See 'd:/Rcompile/CRANpkg/local/4.0/RSNNS.Rcheck/00install.out' for details.
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> ### Name: SolrList-class
> ### Title: SolrList
> ### Aliases: class:SolrList SolrList-class length,SolrList-method
> ###   names,SolrList-method [<-,SolrList,ANY,ANY,ANY-method
> ###   [[,SolrList,ANY-method [,SolrList-method [[,SolrList-method
> ###   [[<-,SolrList-method unique,SolrList-method searchDocs
> ###   searchDocs,Solr SolrList coerce,Solr,SolrList-method
> ###   coerce,SolrList,DocCollection-method show,SolrList-method
> ### Keywords: methods classes
> 
> ### ** Examples
> 
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  3.54 0.11 3.65 NA NA 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rSPARCS.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rsparkling.Rcheck/00install.out' for details.
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    libs   6.9Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rsppfp.Rcheck/00install.out' for details.
negbin.pow : negbin.disp: no visible global function definition for
  'rpois'
negbin.pow : negbin.disp: no visible global function definition for
  'rnbinom'
negbin.pow : inner.fcn: no visible global function definition for
  'na.omit'
negbin.pow : inner.fcn: no visible global function definition for
  'quantile'
negbin.pow: no visible global function definition for 'txtProgressBar'
negbin.pow: no visible global function definition for
  'setTxtProgressBar'
poiss.pow : inner.fcn: no visible global function definition for
  'rpois'
poiss.pow : inner.fcn: no visible global function definition for
  'quantile'
poiss.pow: no visible global function definition for 'txtProgressBar'
poiss.pow: no visible global function definition for
  'setTxtProgressBar'
Undefined global functions or variables:
  na.omit quantile rnbinom rpois setTxtProgressBar txtProgressBar
Consider adding
  importFrom("stats", "na.omit", "quantile", "rnbinom", "rpois")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    libs   4.4Mb
Running 'testthat.R' [1s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(DBI)
  > library(RSQLite)
  > library(RSQL)
  > library(lgr)
  > library(dplyr)
  Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rSQM.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RSSL.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rstanarm.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
Error(s) in re-building vignettes:
--- re-building 'emaxmodel.Rmd' using rmarkdown
Loading required package: Rcpp
Quitting from lines 20-24 (emaxmodel.Rmd) 
Error: processing vignette 'emaxmodel.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'emaxmodel.Rmd'

SUMMARY: processing the following file failed:
  'emaxmodel.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is 17.1Mb
  sub-directories of 1Mb or more:
    lib    4.6Mb
    libs   9.8Mb
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rstap.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rstatix.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RStoolbox.Rcheck/00install.out' for details.
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    doc    1.4Mb
    libs   3.6Mb
Package vignette with placeholder title 'Vignette Title':
  'main-vignette.Rmd'
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
installed size is 29.6Mb
  sub-directories of 1Mb or more:
    libs  29.3Mb
Running examples in 'RSVGTipsDevice-Ex.R' failed
The error most likely occurred in:

> ### Name: RSVGTipsDevice
> ### Title: A SVG Graphics Driver with dynamic tips
> ### Aliases: RSVGTipsDevice
> ### Keywords: device package
> 
> ### ** Examples
> 
> library("RSVGTipsDevice")
> sessionInfo()
R version 4.0.0 RC (2020-04-17 r78247)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows Server 2008 x64 (build 6003) Service Pack 2

Matrix products: default

locale:
[1] LC_COLLATE=C                 LC_CTYPE=German_Germany.1252
[3] LC_MONETARY=C                LC_NUMERIC=C                
[5] LC_TIME=C                   

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] RSVGTipsDevice_1.0-7

loaded via a namespace (and not attached):
[1] compiler_4.0.0
> devSVGTips("svgplot1.svg", toolTipMode=1,
+     title="SVG example plot 1: Shapes and Points, Tooltips are Title + 1 Line")
> plot(c(0,10),c(0,10), type="n", xlab="x", ylab="y",
+     main="Example SVG plot with title + 1 line tips (mode=1)")
> setSVGShapeToolTip(title="A rectangle", desc="that is yellow")
> rect(1,1,4,6, col='yellow')
> setSVGShapeToolTip(title="1st circle with title only")
> points(5.5,7.5,cex=20,pch=19,col='red')
> setSVGShapeToolTip(title="A triangle", desc="big and green")
> polygon(c(3,6,8), c(3,6,3), col='green')
> # no tooltips on these points
> points(2:8, 8:2, cex=3, pch=19, col='black')
> # tooltips on each these points
> invisible(sapply(1:7, function(x)
+ {setSVGShapeToolTip(title=paste("point", x))
+  points(x+1, 8-x, cex=3, pch=1, col='black')}))
> setSVGShapeToolTip(title="Text", desc="can have a tool tip too!")
> text(x=4, y=9, lab="Poke me!", col="blue")
> dev.off()
Running examples in 'RSwissMaps-Ex.R' failed
The error most likely occurred in:

> ### Name: can.plot
> ### Title: Plotting canton-level maps of Switzerland
> ### Aliases: can.plot
> 
> ### ** Examples
> 
>  # Generating sample data:
>  dt <- can.template(2016)
>  for(i in 1:nrow(dt)){dt$values[i] <- sample(c(300:700), 1)/1000}
> 
>  # Plotting sample data:
>  can.plot(dt$bfs_nr, dt$values, 2016)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: can.plot ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Package vignette with placeholder title 'Vignette Title':
  'vignette.Rmd'
Error(s) in re-building vignettes:
--- re-building 'vignette.Rmd' using rmarkdown
Quitting from lines 33-35 (vignette.Rmd) 
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'vignette.Rmd'

SUMMARY: processing the following file failed:
  'vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  9.3Mb
  sub-directories of 1Mb or more:
    libs   9.2Mb
installed size is 11.5Mb
  sub-directories of 1Mb or more:
    Lib  11.5Mb
File
  LICENSE
is not mentioned in the DESCRIPTION file.
Math.Sym: no visible binding for global variable 'transtab'
jythonStart: no visible global function definition for '.jinit'
jythonStart: no visible global function definition for '.jnew'
jythonStart: no visible binding for global variable '.Jython'
sympy: no visible binding for global variable '.Jython'
sympy: no visible global function definition for '.jstrVal'
sympyStart: no visible binding for global variable '.Jython'
Undefined global functions or variables:
  .Jython .jinit .jnew .jstrVal transtab
Malformed Title field: should not end in a period.
barplot.rtconnect: no visible global function definition for 'rainbow'
barplot.rtconnect: no visible global function definition for 'text'
plot.rtconnect: no visible global function definition for 'par'
plot.rtconnect: no visible global function definition for 'axis.Date'
rtconnect: no visible global function definition for 'read.table'
Undefined global functions or variables:
  axis.Date par rainbow read.table text
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "axis.Date", "par", "text")
  importFrom("utils", "read.table")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'reanalysis_rr98.Rmd' using rmarkdown
Loading required package: rtdists
Loading required package: dplyr
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Loading required package: tidyr
Error: package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Loading required package: purrr
Loading required package: lattice
Loading required package: latticeExtra
Loading required package: binom
Quitting from lines 29-52 (reanalysis_rr98.Rmd) 
Error: processing vignette 'reanalysis_rr98.Rmd' failed with diagnostics:
could not find function "group_by"
--- failed re-building 'reanalysis_rr98.Rmd'

SUMMARY: processing the following file failed:
  'reanalysis_rr98.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RTD.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/R.temis.Rcheck/00install.out' for details.
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data   5.7Mb
Malformed Description field: should contain one or more complete sentences.
plotGLCM: no visible global function definition for 'points'
Undefined global functions or variables:
  points
Consider adding
  importFrom("graphics", "points")
to your NAMESPACE file.
GNU make is a SystemRequirements.
Running examples in 'rties-Ex.R' failed
The error most likely occurred in:

> ### Name: dataPrep
> ### Title: Reformat a user-provided dataframe in a generic form appropriate
> ###   for _rties_ modeling
> ### Aliases: dataPrep
> 
> ### ** Examples
> 
> data <- rties_ExampleDataShort
> newData <- dataPrep(basedata=data, dyadId="couple", personId="person", obs_name="dial", 
+ dist_name="female", time_name="time", time_lag=2)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: dataPrep ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'coupled_oscillator_V05.Rmd' using rmarkdown
--- finished re-building 'coupled_oscillator_V05.Rmd'

--- re-building 'inertia_coordination_V05.Rmd' using rmarkdown
Quitting from lines 59-61 (inertia_coordination_V05.Rmd) 
Error: processing vignette 'inertia_coordination_V05.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'inertia_coordination_V05.Rmd'

--- re-building 'overview_data_prep_V05.Rmd' using rmarkdown
Quitting from lines 122-124 (overview_data_prep_V05.Rmd) 
Error: processing vignette 'overview_data_prep_V05.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'overview_data_prep_V05.Rmd'

--- re-building 'sysVar_inOut_V05.Rmd' using rmarkdown
Quitting from lines 22-32 (sysVar_inOut_V05.Rmd) 
Error: processing vignette 'sysVar_inOut_V05.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'sysVar_inOut_V05.Rmd'

SUMMARY: processing the following files failed:
  'inertia_coordination_V05.Rmd' 'overview_data_prep_V05.Rmd'
  'sysVar_inOut_V05.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rtimicropem.Rcheck/00install.out' for details.
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    doc        1.1Mb
    libs       2.3Mb
    projects   2.7Mb
Running examples in 'RTL-Ex.R' failed
The error most likely occurred in:

> ### Name: bond
> ### Title: 'bond'
> ### Aliases: bond
> 
> ### ** Examples
> 
> bond(ytm = 0.05, C = 0.05,T2M = 1,m = 2,output = "price")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: bond ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rtodoist.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rtrek.Rcheck/00install.out' for details.
installed size is 13.8Mb
  sub-directories of 1Mb or more:
    doc    7.8Mb
    libs   5.1Mb
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RtutoR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rtypeform.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rubias.Rcheck/00install.out' for details.
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    R      3.0Mb
    libs   2.2Mb
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    data   3.8Mb
    libs   2.8Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ruler.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rules.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rUnemploymentData.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Running examples in 'runner-Ex.R' failed
The error most likely occurred in:

> ### Name: run_by
> ### Title: Set window parameters
> ### Aliases: run_by
> 
> ### ** Examples
> 
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Running 'spelling.R' [0s]
  Running 'testthat.R' [7s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(runner)
  > 
  > test_check("runner")
  -- 1. Error: dplyr::group_by - dplyr keeps attributes (@test_external_compatibil
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    8. dplyr::group_by(., group1, group2)
    9. base::getExportedValue(pkg, name)
   10. base::asNamespace(ns)
   11. base::getNamespace(ns)
   12. base::loadNamespace(name)
   13. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: correct grouping results (@test_external_compatibility.R#69)  -----
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    8. dplyr::group_by(., group1, group2)
    9. base::getExportedValue(pkg, name)
   10. base::asNamespace(ns)
   11. base::getNamespace(ns)
   12. base::loadNamespace(name)
   13. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 1019 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: dplyr::group_by - dplyr keeps attributes (@test_external_compatibility.R#14) 
  2. Error: correct grouping results (@test_external_compatibility.R#69) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'apply_any_r_function.Rmd' using rmarkdown
--- finished re-building 'apply_any_r_function.Rmd'

--- re-building 'built-in_functions.Rmd' using rmarkdown
--- finished re-building 'built-in_functions.Rmd'

--- re-building 'runner_examples.Rmd' using rmarkdown
Quitting from lines 85-101 (runner_examples.Rmd) 
Error: processing vignette 'runner_examples.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'runner_examples.Rmd'

SUMMARY: processing the following file failed:
  'runner_examples.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc   4.7Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rusk.Rcheck/00install.out' for details.
Unavailable namespace imported from by a ':::' call: 'revdbayes'
  See the note in ?`:::` about the use of this operator.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   5.4Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rvertnet.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
HapMendlianCheck: no visible global function definition for
  'write.table'
rvPDT.test.sub: no visible global function definition for 'pnorm'
whap.prehap: no visible global function definition for 'write.table'
whap.prehap: no visible global function definition for 'read.table'
Undefined global functions or variables:
  pnorm read.table write.table
Consider adding
  importFrom("stats", "pnorm")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
'library' or 'require' call to 'pixmap' which was already attached by Depends.
  Please remove these calls from your code.
rvideopoker: warning in rp.radiogroup(mypanel, var =
  state$penny.nickel.quarter.dollar, initval = 1, values = c(1, 5, 25,
  100), title = "Bet (in Cents)", action = setbet): partial argument
  match of 'var' to 'variable'
rvideopoker: warning in rp.slider(mypanel, var = state$no.of.credits,
  from = 1, to = 5, initval = 1, title = "How many Credits?",
  resolution = 1, action = creditset, showvalue = TRUE): partial
  argument match of 'var' to 'variable'
rvideopoker: warning in rp.checkbox(panel = mypanel, var =
  state$keepC1, action = card1check, title = "Keep Card 1?"): partial
  argument match of 'var' to 'variable'
rvideopoker: warning in rp.checkbox(panel = mypanel, var =
  state$keepC2, action = card2check, title = "Keep Card 2?"): partial
  argument match of 'var' to 'variable'
rvideopoker: warning in rp.checkbox(panel = mypanel, var =
  state$keepC3, action = card3check, title = "Keep Card 3?"): partial
  argument match of 'var' to 'variable'
rvideopoker: warning in rp.checkbox(panel = mypanel, var =
  state$keepC4, action = card4check, title = "Keep Card 4?"): partial
  argument match of 'var' to 'variable'
rvideopoker: warning in rp.checkbox(panel = mypanel, var =
  state$keepC5, action = card5check, title = "Keep Card 5?"): partial
  argument match of 'var' to 'variable'
rvideopoker : plotFrame: no visible global function definition for
  'par'
rvideopoker : showBack: no visible global function definition for
  'title'
rvideopoker : showCardsInitially: no visible global function definition
  for 'title'
Undefined global functions or variables:
  par title
Consider adding
  importFrom("graphics", "par", "title")
to your NAMESPACE file.
Package suggested but not available for checking: 'gpuR'
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    include   5.1Mb
installed size is 13.1Mb
  sub-directories of 1Mb or more:
    include   3.9Mb
    libs      8.8Mb
Running examples in 'rvinecopulib-Ex.R' failed
The error most likely occurred in:

> ### Name: plot.rvine_structure
> ### Title: Plotting R-vine structures
> ### Aliases: plot.rvine_structure plot.rvine_matrix
> 
> ### ** Examples
> 
> plot(cvine_structure(1:5))
Error in plot.vinecop_dist(vinecop_dist(pcs, x), ...) : 
  The 'ggraph' package must be installed to plot.
Calls: plot -> plot.rvine_structure -> plot.vinecop_dist
Execution halted
Running 'testthat.R' [10s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(rvinecopulib)
  > 
  > test_check("rvinecopulib")
  -- 1. Error: plot functions work (@test_rvine_structure.R#43)  -----------------
  The 'ggraph' package must be installed to plot.
  Backtrace:
   1. base::plot(vc)
   2. rvinecopulib:::plot.vinecop_dist(vc)
  
  -- 2. Error: plot functions work (@test_vinecop_dist.R#85)  --------------------
  The 'ggraph' package must be installed to plot.
  Backtrace:
    1. testthat::expect_silent(...)
   10. rvinecopulib:::plot.vinecop_dist(...)
  
  == testthat results  ===========================================================
  [ OK: 284 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: plot functions work (@test_rvine_structure.R#43) 
  2. Error: plot functions work (@test_vinecop_dist.R#85) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rvkstat.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
lc_TDT: no visible global function definition for 'pchisq'
rvTDT: no visible global function definition for 'dbeta'
Undefined global functions or variables:
  dbeta pchisq
Consider adding
  importFrom("stats", "dbeta", "pchisq")
to your NAMESPACE file.
LASSO: no visible global function definition for 'lm'
LASSO: no visible global function definition for 'anova'
LASSO: no visible global function definition for 'glm'
LASSO: no visible global function definition for 'pchisq'
LASSO : <anonymous>: no visible global function definition for
  'extractAIC'
PCR : <anonymous>: no visible global function definition for 'cor'
PLS : <anonymous>: no visible global function definition for 'cor'
RR : RRscore: no visible binding for global variable 'sd'
SPLS: no visible global function definition for 'lm'
SPLS: no visible global function definition for 'anova'
SPLS : <anonymous>: no visible global function definition for
  'extractAIC'
VTWOD : getScores: no visible global function definition for 'sd'
VTWOD : getScores: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  anova cor extractAIC glm lm pchisq pnorm sd
Consider adding
  importFrom("stats", "anova", "cor", "extractAIC", "glm", "lm",
             "pchisq", "pnorm", "sd")
to your NAMESPACE file.
check_ISO_code: no visible binding for global variable 'NoAm_country'
check_ISO_code: no visible binding for global variable 'SoAm_country'
check_ISO_code: no visible binding for global variable 'Oceana_country'
check_ISO_code: no visible binding for global variable 'Africa_country'
check_ISO_code: no visible binding for global variable 'Asia_country'
check_ISO_code: no visible binding for global variable 'Eur_country'
climate_map: no visible binding for global variable 'data'
date_correct: no visible global function definition for 'tail'
Undefined global functions or variables:
  Africa_country Asia_country Eur_country NoAm_country Oceana_country
  SoAm_country data tail
Consider adding
  importFrom("utils", "data", "tail")
to your NAMESPACE file.
RWBP.default: no visible global function definition for 'na.omit'
RWBP.default: no visible global function definition for 'kmeans'
RWBP.formula: no visible global function definition for 'model.extract'
predict.RWBP: no visible global function definition for 'head'
Undefined global functions or variables:
  head kmeans model.extract na.omit
Consider adding
  importFrom("stats", "kmeans", "model.extract", "na.omit")
  importFrom("utils", "head")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/RWDataPlyr.Rcheck/00install.out' for details.
weblogo: no visible global function definition for 'browseURL'
Undefined global functions or variables:
  browseURL
Consider adding
  importFrom("utils", "browseURL")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/rwebstat.Rcheck/00install.out' for details.
installed size is 10.7Mb
  sub-directories of 1Mb or more:
    java  10.7Mb
File 'RWinEdt/R/zzz.R':
  .onAttach calls:
    writeLines(edtFile, con = send2RedtLoc)
    writeLines(edtFile, con = send2RedtLoc)

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.
File
  LICENSE
is not mentioned in the DESCRIPTION file.
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   5.0Mb
Malformed Title field: should not end in a period.
.dwt: no visible global function definition for 'median'
.udwt: no visible global function definition for 'median'
plotSignalTransformation: no visible global function definition for
  'box'
plotSignalTransformation: no visible global function definition for
  'axis'
plotSignalTransformation: no visible global function definition for
  'lines'
plotSignalTransformation: no visible global function definition for
  'legend'
Undefined global functions or variables:
  axis box legend lines median
Consider adding
  importFrom("graphics", "axis", "box", "legend", "lines")
  importFrom("stats", "median")
to your NAMESPACE file.
Running examples in 'rwunderground-Ex.R' failed
The error most likely occurred in:

> ### Name: set_location
> ### Title: Specifies location of request
> ### Aliases: set_location
> 
> ### ** Examples
> 
> set_location(zip_code = "90210")
[1] "90210"
> set_location(territory = "Hawaii", city = "Honolulu")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: set_location ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Package suggested but not available for checking: 'SnakeCharmR'
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    libs   6.0Mb
Package suggested but not available for checking: 'unix'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ryandexdirect.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
flemming.plot: no visible global function definition for 'par'
flemming.plot: no visible global function definition for 'segments'
flemming.plot: no visible global function definition for 'text'
flemming.plot : triax.segments: no visible global function definition
  for 'segments'
legend.bubbles: no visible global function definition for 'quantile'
legend.bubbles: no visible global function definition for 'legend'
other.methods: no visible global function definition for 'quantile'
pejrup.plot: no visible global function definition for 'par'
pejrup.plot: no visible global function definition for 'segments'
pejrup.plot: no visible global function definition for 'text'
pejrup.plot : triax.segments: no visible global function definition for
  'segments'
pejrup.plot: no visible global function definition for 'legend'
rysgran.plot: no visible global function definition for 'par'
rysgran.plot: no visible global function definition for 'text'
rysgran.plot: no visible global function definition for 'points'
rysgran.plot: no visible global function definition for 'abline'
rysgran.plot: no visible global function definition for 'mtext'
rysgran.ternary: no visible global function definition for 'par'
rysgran.ternary: no visible global function definition for 'points'
rysgran.ternary: no visible global function definition for 'text'
shepard.plot: no visible global function definition for 'par'
shepard.plot: no visible global function definition for 'segments'
shepard.plot: no visible global function definition for 'text'
shepard.plot : triax.segments: no visible global function definition
  for 'segments'
shepard.plot: no visible global function definition for 'legend'
Undefined global functions or variables:
  abline legend mtext par points quantile segments text
Consider adding
  importFrom("graphics", "abline", "legend", "mtext", "par", "points",
             "segments", "text")
  importFrom("stats", "quantile")
to your NAMESPACE file.
installed size is 13.3Mb
  sub-directories of 1Mb or more:
    include   2.4Mb
    libs      9.9Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/s4vd.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sabre.Rcheck/00install.out' for details.
calculate.summary: no visible global function definition for 'sd'
detect.saccades: no visible global function definition for 'median'
diagnostic.plot: no visible global function definition for 'dev.new'
diagnostic.plot: no visible global function definition for 'par'
diagnostic.plot: no visible global function definition for 'recordPlot'
diagnostic.plot: no visible global function definition for 'dev.off'
Undefined global functions or variables:
  dev.new dev.off median par recordPlot sd
Consider adding
  importFrom("grDevices", "dev.new", "dev.off", "recordPlot")
  importFrom("graphics", "par")
  importFrom("stats", "median", "sd")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
CV.Epidemic.Vn: no visible global function definition for 'uniroot'
CV.Epidemic.Wn: no visible global function definition for 'uniroot'
G.alfa: no visible global function definition for 'dchisq'
Graf.Diagnostic: no visible global function definition for 'stepfun'
Graf.Diagnostic: no visible global function definition for 'title'
Graf.Diagnostic: no visible global function definition for 'quantile'
Graf.Diagnostic: no visible global function definition for 'legend'
Graf.Diagnostic: no visible global function definition for 'arrows'
Graf.Diagnostic: no visible global function definition for 'par'
Plot.ll: no visible global function definition for 'segments'
Plot.ll: no visible global function definition for 'axis'
SemiparChangePoint: no visible global function definition for 'glm'
SemiparChangePoint: no visible binding for global variable 'binomial'
SemiparChangePoint: no visible global function definition for
  'glm.control'
SemiparChangePoint: no visible global function definition for 'coef'
Sn.alfa : tempfun: no visible global function definition for 'dchisq'
Sn.alfa : d.tempfun: no visible global function definition for 'dchisq'
Zn.alfa : tempfun: no visible global function definition for 'dchisq'
Zn.alfa : d.tempfun: no visible global function definition for 'dchisq'
cumsum.test: no visible global function definition for 'var'
p.OneChange : tempfun: no visible global function definition for
  'dchisq'
p.OneChange: no visible global function definition for 'uniroot'
Undefined global functions or variables:
  arrows axis binomial coef dchisq glm glm.control legend par quantile
  segments stepfun title uniroot var
Consider adding
  importFrom("graphics", "arrows", "axis", "legend", "par", "segments",
             "title")
  importFrom("stats", "binomial", "coef", "dchisq", "glm", "glm.control",
             "quantile", "stepfun", "uniroot", "var")
to your NAMESPACE file.
prepare_Rd: BootsModelTest.Rd:28-29: Dropping empty section \details
prepare_Rd: BootsModelTest.Rd:43: Dropping empty section \note
prepare_Rd: CriticalValues.Rd:38: Dropping empty section \note
prepare_Rd: Pvalues.Rd:24-25: Dropping empty section \details
prepare_Rd: Pvalues.Rd:38: Dropping empty section \note
prepare_Rd: cumsum.test.Rd:16-17: Dropping empty section \details
prepare_Rd: cumsum.test.Rd:28: Dropping empty section \note
fit.saery.AR1: no visible global function definition for 'qnorm'
fit.saery.MA1: no visible global function definition for 'qnorm'
fit.saery.indep: no visible global function definition for 'qnorm'
mse.saery.boot.AR1.typeI: no visible global function definition for
  'rnorm'
mse.saery.boot.AR1.typeI: no visible global function definition for
  'write.table'
mse.saery.boot.AR1.typeII: no visible global function definition for
  'rnorm'
mse.saery.boot.AR1.typeII: no visible global function definition for
  'write.table'
mse.saery.boot.MA1.typeI: no visible global function definition for
  'rnorm'
mse.saery.boot.MA1.typeI: no visible global function definition for
  'write.table'
mse.saery.boot.MA1.typeII: no visible global function definition for
  'rnorm'
mse.saery.boot.MA1.typeII: no visible global function definition for
  'write.table'
plot.saery: no visible global function definition for 'devAskNewPage'
plot.saery: no visible global function definition for 'par'
plot.saery: no visible global function definition for 'abline'
plot.saery: no visible global function definition for 'title'
plot.saery: no visible global function definition for 'axis'
plot.saery: no visible global function definition for 'lines'
plot.saery: no visible global function definition for 'legend'
pvalue: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  abline axis devAskNewPage legend lines par pnorm qnorm rnorm title
  write.table
Consider adding
  importFrom("grDevices", "devAskNewPage")
  importFrom("graphics", "abline", "axis", "legend", "lines", "par",
             "title")
  importFrom("stats", "pnorm", "qnorm", "rnorm")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/saeSim.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'lpSolveAPI'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
glm: no visible binding for global variable 'gaussian'
glm: no visible global function definition for 'glm.control'
glm: no visible global function definition for 'model.response'
glm: no visible global function definition for 'is.empty.model'
glm: no visible global function definition for 'model.matrix'
glm: no visible global function definition for 'model.weights'
glm: no visible global function definition for 'model.offset'
glm: no visible global function definition for 'model.extract'
glm: no visible global function definition for 'glm.fit'
glm: no visible global function definition for '.getXlevels'
separator: no visible global function definition for 'make.lp'
separator: no visible global function definition for 'set.column'
separator: no visible global function definition for 'set.rhs'
separator: no visible global function definition for 'set.constr.type'
separator: no visible global function definition for 'set.objfn'
separator: no visible global function definition for 'set.bounds'
separator: no visible global function definition for 'lp.control'
separator: no visible global function definition for 'get.variables'
separator: no visible global function definition for 'set.basis'
separator: no visible global function definition for
  'get.dual.solution'
Undefined global functions or variables:
  .getXlevels gaussian get.dual.solution get.variables glm.control
  glm.fit is.empty.model lp.control make.lp model.extract model.matrix
  model.offset model.response model.weights set.basis set.bounds
  set.column set.constr.type set.objfn set.rhs
Consider adding
  importFrom("stats", ".getXlevels", "gaussian", "glm.control",
             "glm.fit", "is.empty.model", "model.extract",
             "model.matrix", "model.offset", "model.response",
             "model.weights")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/safetyGraphics.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/salesforcer.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sambia.Rcheck/00install.out' for details.
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc    2.9Mb
    libs   2.3Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sampler.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/samplesize4surveys.Rcheck/00install.out' for details.
propdiff.acc: no visible global function definition for 'rbeta'
propdiff.acc: no visible global function definition for 'rbinom'
propdiff.acc: no visible global function definition for 'pbeta'
propdiff.alc: no visible global function definition for 'rbeta'
propdiff.alc: no visible global function definition for 'rbinom'
propdiff.alc: no visible global function definition for 'qbeta'
propdiff.freq: no visible global function definition for 'qnorm'
propdiff.mblacc: no visible global function definition for 'rbeta'
propdiff.mblacc: no visible global function definition for 'rbinom'
propdiff.mblacc: no visible global function definition for 'pbeta'
propdiff.mblalc: no visible global function definition for 'rbeta'
propdiff.mblalc: no visible global function definition for 'rbinom'
propdiff.mblalc: no visible global function definition for 'qbeta'
propdiff.mblmodwoc: no visible global function definition for 'qchisq'
propdiff.mblmodwoc: no visible global function definition for 'pbeta'
propdiff.mblwoc: no visible global function definition for 'pbeta'
propdiff.modwoc: no visible global function definition for 'qchisq'
propdiff.modwoc: no visible global function definition for 'pbeta'
propdiff.woc: no visible global function definition for 'pbeta'
Undefined global functions or variables:
  pbeta qbeta qchisq qnorm rbeta rbinom
Consider adding
  importFrom("stats", "pbeta", "qbeta", "qchisq", "qnorm", "rbeta",
             "rbinom")
to your NAMESPACE file.
GraphBinaryForestPlot: no visible global function definition for
  'abline'
GraphBinaryForestPlot: no visible global function definition for 'text'
GraphContinuousForestPlot: no visible global function definition for
  'abline'
GraphContinuousForestPlot: no visible global function definition for
  'text'
ImputeBinaryEvents: no visible global function definition for 'rbinom'
ImputeSMD: no visible global function definition for 'rnorm'
funnelplot: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline rbinom rnorm text
Consider adding
  importFrom("graphics", "abline", "text")
  importFrom("stats", "rbinom", "rnorm")
to your NAMESPACE file.
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    doc    2.3Mb
    help   3.3Mb
    libs   2.6Mb
generate.sample.core: no visible global function definition for
  'predict'
mdh: no visible global function definition for 'model.frame'
mdh: no visible binding for global variable 'na.fail'
mdh: no visible global function definition for '.getXlevels'
mdh: no visible global function definition for 'quantile'
mdh: no visible global function definition for 'hist'
predict.mdh: no visible global function definition for 'model.frame'
samur: no visible global function definition for 'predict'
Undefined global functions or variables:
  .getXlevels hist model.frame na.fail predict quantile
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", ".getXlevels", "model.frame", "na.fail", "predict",
             "quantile")
to your NAMESPACE file.
Errors in running code in vignettes:
when running code in 'sandwich-CL.Rnw'

> library("sandwich")

> library("geepack")

  When sourcing 'sandwich-CL.R':
Error: package or namespace load failed for 'geepack' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted

  'sandwich-CL.Rnw'... failed
  'sandwich-OOP.Rnw'... [3s] OK
  'sandwich.Rnw'... [1s] OK
Error(s) in re-building vignettes:
--- re-building 'sandwich-CL.Rnw' using Sweave

Error: processing vignette 'sandwich-CL.Rnw' failed with diagnostics:
 chunk 1 (label = preliminaries) 
Error : package or namespace load failed for 'geepack' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?

--- failed re-building 'sandwich-CL.Rnw'

--- re-building 'sandwich-OOP.Rnw' using Sweave
Loading required package: car
Loading required package: carData
Loading required package: lmtest
Loading required package: zoo

Attaching package: 'zoo'

The following objects are masked from 'package:base':

    as.Date, as.Date.numeric

Loading required package: sandwich
Loading required package: survival
--- finished re-building 'sandwich-OOP.Rnw'

--- re-building 'sandwich.Rnw' using Sweave

Attaching package: 'zoo'

The following objects are masked from 'package:base':

    as.Date, as.Date.numeric

--- finished re-building 'sandwich.Rnw'

SUMMARY: processing the following file failed:
  'sandwich-CL.Rnw'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SanFranBeachWater.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/saqgetr.Rcheck/00install.out' for details.
installed size is 63.0Mb
  sub-directories of 1Mb or more:
    extdata  62.6Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sarima.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SAR.Rcheck/00install.out' for details.
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    bin   5.8Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sars.Rcheck/00install.out' for details.
download.sas7bdat.sources : <anonymous>: no visible global function
  definition for 'download.file'
generate.sas7bdat.source: no visible global function definition for
  'download.file'
Undefined global functions or variables:
  download.file
Consider adding
  importFrom("utils", "download.file")
to your NAMESPACE file.
parse.SAScii: no visible binding for global variable 'end'
parse.SAScii: no visible binding for global variable 'start'
read.SAScii: no visible global function definition for 'download.file'
read.SAScii: no visible global function definition for 'unzip'
read.SAScii: no visible global function definition for 'read.fwf'
read.SAScii: no visible global function definition for 'capture.output'
Undefined global functions or variables:
  capture.output download.file end read.fwf start unzip
Consider adding
  importFrom("stats", "end", "start")
  importFrom("utils", "capture.output", "download.file", "read.fwf",
             "unzip")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
SASPECT: no visible global function definition for 'dbinom'
my.SOnePro: missing arguments not allowed in calls to 'c'
my.ttest: no visible global function definition for 'var'
Undefined global functions or variables:
  dbinom var
Consider adding
  importFrom("stats", "dbinom", "var")
to your NAMESPACE file.
installed size is  8.1Mb
  sub-directories of 1Mb or more:
    doc    1.7Mb
    libs   6.3Mb
GNU make is a SystemRequirements.
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    R         1.5Mb
    extdata   1.3Mb
    libs      2.0Mb
BugReports field should not be empty
loads: no visible global function definition for 'untar'
saves: no visible global function definition for 'tar'
Undefined global functions or variables:
  tar untar
Consider adding
  importFrom("utils", "tar", "untar")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sazedR.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
K: no visible global function definition for 'dnorm'
sBF: no visible global function definition for 'density'
sBF: no visible global function definition for 'txtProgressBar'
sBF: no visible global function definition for 'setTxtProgressBar'
Undefined global functions or variables:
  density dnorm setTxtProgressBar txtProgressBar
Consider adding
  importFrom("stats", "density", "dnorm")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Running examples in 'sboost-Ex.R' failed
The error most likely occurred in:

> ### Name: assess
> ### Title: sboost Assessment Function
> ### Aliases: assess
> 
> ### ** Examples
> 
> # malware
> malware_classifier <- sboost(malware[-1], malware[1], iterations = 5, positive = 1)
> assess(malware_classifier, malware[-1], malware[1])
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: assess ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Malformed Title field: should not end in a period.
BugReports field is not a suitable URL but appears to contain an email address
  not specified by mailto: nor contained in < >
   use the Contact field instead
Malformed Description field: should contain one or more complete sentences.
fitSBSA: no visible binding for global variable 'var'
fitSBSA: no visible global function definition for 'var'
fitSBSA: no visible global function definition for 'qnorm'
Undefined global functions or variables:
  qnorm var
Consider adding
  importFrom("stats", "qnorm", "var")
to your NAMESPACE file.
Packages which this enhances but not available for checking:
  'gurobi', 'Rcplex', 'pogs'
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/scanstatistics.Rcheck/00install.out' for details.
'library' or 'require' call to 'stats' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
plot.scair: no visible global function definition for 'par'
plot.scair: no visible global function definition for 'points'
plot.scar: no visible global function definition for 'par'
plot.scar: no visible global function definition for 'points'
predict.scair: no visible global function definition for 'approx'
predict.scar: no visible global function definition for 'approx'
scair: no visible global function definition for 'gaussian'
scair: no visible global function definition for 'runif'
scair: no visible global function definition for 'rnorm'
scar: no visible global function definition for 'gaussian'
scar: no visible global function definition for 'glm.fit'
scar: no visible global function definition for 'approx'
Undefined global functions or variables:
  approx gaussian glm.fit par points rnorm runif
Consider adding
  importFrom("graphics", "par", "points")
  importFrom("stats", "approx", "gaussian", "glm.fit", "rnorm", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/scatterpie.Rcheck/00install.out' for details.
Running examples in 'sccr-Ex.R' failed
The error most likely occurred in:

> ### Name: survCompeting
> ### Title: Self-Consistent, Competing Risks (SC-CR) Algorithms
> ### Aliases: survCompeting
> 
> ### ** Examples
> 
> data(censoredMatrix)
> df <- inputM(censoredMatrix)
> 
> res <- survCompeting(df$input, df$tau, 8, 3, 0.01)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: survCompeting ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Package vignette with placeholder title 'Vignette Title':
  'buildtree.Rmd'
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    data   6.7Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/scgwr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/scholar.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
prime.factor: no visible global function definition for 'data'
prime.factor: no visible binding for global variable 'primlist'
Undefined global functions or variables:
  data primlist
Consider adding
  importFrom("utils", "data")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'theoffice.Rmd' using rmarkdown
Quitting from lines 37-38 (theoffice.Rmd) 
Error: processing vignette 'theoffice.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'theoffice.Rmd'

SUMMARY: processing the following file failed:
  'theoffice.Rmd'

Error: Vignette re-building failed.
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(scico)
  > 
  > test_check("scico")
  -- 1. Error: (unknown) (@test_ggplot2_scales.R#7)  -----------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test_ggplot2_scales.R#7) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/scipub.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sclr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/scMappR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/scoper.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
score.GGUM: no visible global function definition for 'dnorm'
score.GGUM: no visible global function definition for 'hist'
score.GGUM: no visible global function definition for 'write.table'
Undefined global functions or variables:
  dnorm hist write.table
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "dnorm")
  importFrom("utils", "write.table")
to your NAMESPACE file.
CreatePssm: no visible binding for global variable 'training'
Undefined global functions or variables:
  training
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SCORPIUS.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SCOUTer.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SCPME.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' calls to packages already attached by Depends:
  'RCurl' 'XML'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'RCurl' 'XML'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
scrape: no visible global function definition for 'getURLAsynchronous'
scrape: no visible global function definition for 'runif'
scrape: no visible global function definition for 'capture.output'
scrape: no visible binding for global variable 'xmlParse'
scrape: no visible binding for global variable 'htmlParse'
Undefined global functions or variables:
  capture.output getURLAsynchronous htmlParse runif xmlParse
Consider adding
  importFrom("stats", "runif")
  importFrom("utils", "capture.output")
to your NAMESPACE file.
Running examples in 'scriptuRs-Ex.R' failed
The error most likely occurred in:

> ### Name: kjv_bible
> ### Title: Tidy data frame of the King James Version of the Bible
> ### Aliases: kjv_bible
> 
> ### ** Examples
> 
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(scriptuRs)
  > 
  > test_check("scriptuRs")
  -- 1. Error: (unknown) (@test_kjv_bible.R#5)  ----------------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::suppressPackageStartupMessages(library(dplyr))
   3. base::library(dplyr)
   4. base::tryCatch(...)
   5. base:::tryCatchList(expr, classes, parentenv, handlers)
   6. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   7. value[[3L]](cond)
  
  -- 2. Error: (unknown) (@test_lds_scriptures.R#5)  -----------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::suppressPackageStartupMessages(library(dplyr))
   3. base::library(dplyr)
   4. base::tryCatch(...)
   5. base:::tryCatchList(expr, classes, parentenv, handlers)
   6. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   7. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: (unknown) (@test_kjv_bible.R#5) 
  2. Error: (unknown) (@test_lds_scriptures.R#5) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/scRNAtools.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/scUtils.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SCVA.Rcheck/00install.out' for details.
lahiri.design: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    libs   2.3Mb
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    libs   4.0Mb
estimateTimeToComputeTargetDefinition: no visible global function
  definition for 'flush.console'
estimateTimeToComputeTargetDefinition: no visible global function
  definition for 'combn'
initialize,sdcTargetDefinitionClass: no visible global function
  definition for 'flush.console'
initialize,sdcTargetDefinitionClass: no visible global function
  definition for 'combn'
initialize,sdcTargetDefinitionClass: no visible global function
  definition for 'quantile'
initialize,sdcTargetMatrixClass: no visible global function definition
  for 'flush.console'
Undefined global functions or variables:
  combn flush.console quantile
Consider adding
  importFrom("stats", "quantile")
  importFrom("utils", "combn", "flush.console")
to your NAMESPACE file.
prepare_Rd: sdd.Rd:46-47: Dropping empty section \seealso
prepare_Rd: sddpack-package.Rd:31-32: Dropping empty section \seealso
prepare_Rd: sddsolve.Rd:29-30: Dropping empty section \references
prepare_Rd: sddsolve.Rd:38-39: Dropping empty section \seealso
prepare_Rd: sddsolve.Rd:40-41: Dropping empty section \examples
.ACF.compute: no visible global function definition for 'pnorm'
.ACF.compute: no visible global function definition for 'qnorm'
.ACF.compute: no visible global function definition for 'pchisq'
.ACF.plot: no visible global function definition for 'abline'
.ADF.compute: no visible global function definition for 'qnorm'
.ADF.compute: no visible global function definition for 'chisq.test'
.ADF.compute: no visible global function definition for 'qchisq'
.ADF.compute: no visible global function definition for 'pchisq'
.ADF.plot: no visible global function definition for 'abline'
.CADF.plot: no visible global function definition for 'points'
.DeltaADF.plot: no visible global function definition for 'abline'
.RPADF.compute: no visible global function definition for 'pchisq'
.RPADF.compute: no visible global function definition for 'qchisq'
.RPADF.plot: no visible global function definition for 'abline'
.RPADF.plot: no visible global function definition for 'rect'
.fmin: no visible global function definition for 'optimize'
.fobj: no visible global function definition for 'pchisq'
.gen.plot: no visible global function definition for 'axis'
.gen.plot: no visible global function definition for 'box'
.gen.plot: no visible global function definition for 'abline'
.lcv: no visible global function definition for 'bw.nrd0'
.lcv: no visible global function definition for 'nlm'
ADF: no visible binding for global variable 'p.adjust.methods'
ADF: no visible global function definition for 'p.adjust'
Undefined global functions or variables:
  abline axis box bw.nrd0 chisq.test nlm optimize p.adjust
  p.adjust.methods pchisq pnorm points qchisq qnorm rect
Consider adding
  importFrom("graphics", "abline", "axis", "box", "points", "rect")
  importFrom("stats", "bw.nrd0", "chisq.test", "nlm", "optimize",
             "p.adjust", "p.adjust.methods", "pchisq", "pnorm", "qchisq",
             "qnorm")
to your NAMESPACE file.
installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc   5.7Mb
Running examples in 'sdglinkage-Ex.R' failed
The error most likely occurred in:

> ### Name: compare_sdg
> ### Title: Compare the performance of generators.
> ### Aliases: compare_sdg
> 
> ### ** Examples
> 
> library(mlr)
Loading required package: ParamHelpers
Error: package or namespace load failed for 'mlr' in library.dynam(lib, package, package.lib):
 DLL 'mlr' not found: maybe not installed for this architecture?
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SDLfilter.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sdStaf.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'lars'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
sealasso: no visible global function definition for 'lars'
weight.calc: no visible global function definition for 'lars'
Undefined global functions or variables:
  lars
installed size is  7.9Mb
  sub-directories of 1Mb or more:
    R   7.0Mb
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
adx: no visible global function definition for 'abline'
adx: no visible global function definition for 'legend'
dx: no visible global function definition for 'abline'
dx: no visible global function definition for 'legend'
maxd: no visible global function definition for 'abline'
maxd: no visible global function definition for 'legend'
pc: no visible global function definition for 'rainbow'
pc: no visible global function definition for 'abline'
pc: no visible global function definition for 'legend'
pc: no visible global function definition for 'points'
pcu: no visible global function definition for 'rainbow'
pcu: no visible global function definition for 'abline'
pcu: no visible global function definition for 'legend'
pcu: no visible global function definition for 'points'
rmsd: no visible global function definition for 'abline'
rmsd: no visible global function definition for 'legend'
rsd: no visible global function definition for 'abline'
rsd: no visible global function definition for 'legend'
Undefined global functions or variables:
  abline legend points rainbow
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "abline", "legend", "points")
to your NAMESPACE file.
Package vignette with placeholder title 'Vignette Title':
  'seastests-vignette.Rmd'
Package in Depends field not imported from: 'JM'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
SEchart: no visible global function definition for 'rect'
SEchart: no visible global function definition for 'par'
SEchart: no visible global function definition for 'grid'
SEchart: no visible global function definition for 'axis'
SEchart: no visible global function definition for 'text'
SEchart: no visible global function definition for 'lines'
SEchart: no visible global function definition for 'heat.colors'
SEchart: no visible global function definition for 'topo.colors'
SEchart: no visible global function definition for 'cm.colors'
SEchart: no visible global function definition for 'terrain.colors'
SEchart: no visible global function definition for 'gray.colors'
SEchart: no visible global function definition for 'rainbow'
SEchart: no visible global function definition for 'points'
SEchart: no visible global function definition for 'legend'
Undefined global functions or variables:
  axis cm.colors gray.colors grid heat.colors legend lines par points
  rainbow rect terrain.colors text topo.colors
Consider adding
  importFrom("grDevices", "cm.colors", "gray.colors", "heat.colors",
             "rainbow", "terrain.colors", "topo.colors")
  importFrom("graphics", "axis", "grid", "legend", "lines", "par",
             "points", "rect", "text")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
fdc2s: no visible global function definition for 'lm'
fdc3s: no visible global function definition for 'lm'
fds2s: no visible global function definition for 'lm'
fds3s: no visible global function definition for 'lm'
Undefined global functions or variables:
  lm
Consider adding
  importFrom("stats", "lm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/secrettext.Rcheck/00install.out' for details.
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    R      1.4Mb
    libs   3.5Mb
GNU make is a SystemRequirements.
Package which this enhances but not available for checking: 'doMC'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/secuTrialR.Rcheck/00install.out' for details.
Running examples in 'seeclickfixr-Ex.R' failed
The error most likely occurred in:

> ### Name: list_places
> ### Title: Query sub-city neighborhoods in which issues can be reported.
> ### Aliases: list_places
> 
> ### ** Examples
> 
> list_places("Boston, MA",limit = 5)
Error in function (type, msg, asError = TRUE)  : 
  Unknown SSL protocol error in connection to seeclickfix.com:443 
Calls: list_places -> <Anonymous> -> curlPerform -> <Anonymous> -> fun
Execution halted
Running examples in 'seeds-Ex.R' failed
The error most likely occurred in:

> ### Name: plotAnno
> ### Title: Create annotated plot
> ### Aliases: plotAnno plotAnno,resultsSeeds-method plotAnno,list-method
> 
> ### ** Examples
> 
> 
> data(uvb_res)
> 
> statesAnno <- c("x1", "x2", "x3", "x4", "x5", "x6", "x7", "x8", "x9", "x10", "x11", "x12", "x13")
> measurAnno <- c("y1", "y2", "y3", "y4", "y5")
> 
> plotAnno(res[[2]], stateAnno = statesAnno, measAnno =  measurAnno)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: plotAnno ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Malformed Description field: should contain one or more complete sentences.
.read.SeerStatTXT: no visible global function definition for
  'read.table'
.write.SeerStatTXT: no visible global function definition for
  'write.table'
Undefined global functions or variables:
  read.table write.table
Consider adding
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
prepare_Rd: SEER2RTestdata.Rd:77-78: Dropping empty section \source
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SEERaBomb.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/see.Rcheck/00install.out' for details.
Running 'testthat.R' [34s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(seer)
  > 
  > test_check("seer")
  -- 1. Error: test for feature_cal (@test-feature_cal.R#7)  ---------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. seer::cal_features(...)
   2. dplyr::bind_cols
   3. base::getExportedValue(pkg, name)
   4. base::asNamespace(ns)
   5. base::getNamespace(ns)
   6. base::loadNamespace(name)
   7. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: test for feature_calfor a monthly series (@test-feature_cal.R#53)  
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. seer::cal_features(...)
   2. dplyr::bind_cols
   3. base::getExportedValue(pkg, name)
   4. base::asNamespace(ns)
   5. base::getNamespace(ns)
   6. base::loadNamespace(name)
   7. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 41 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: test for feature_cal (@test-feature_cal.R#7) 
  2. Error: test for feature_calfor a monthly series (@test-feature_cal.R#53) 
  
  Error: testthat unit tests failed
  Execution halted
Running examples in 'segclust2d-Ex.R' failed
The error most likely occurred in:

> ### Name: segclust
> ### Title: Segmentation/Clustering of movement data - Generic function
> ### Aliases: segclust segclust.data.frame segclust.Move segclust.ltraj
> 
> ### ** Examples
> 
> #' @examples
> df <-  test_data()$data
> #' # data is a data.frame with column 'x' and 'y'
> # Simple segmentation with automatic subsampling if data has more than 1000 rows:
> res <- segclust(df, Kmax = 15, lmin = 10, ncluster = 2:4, seg.var = c("x","y"))
Rescaling variables - you can disable this with scale.variable = FALSE
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: segclust ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(segclust2d)
  > 
  > test_check("segclust2d")
  -- 1. Error: Test of segmentation (@test_segclust.R#7)  ------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. segclust2d::segmentation(...)
    2. segclust2d::segmentation.data.frame(...)
    3. segclust2d::segmentation_internal(...)
    4. base::lapply(...)
    5. segclust2d:::FUN(X[[i]], ...)
    6. segclust2d::stat_segm(...)
    7. segclust2d::calc_stat_states(subdata, df.segm, diag.var, order.var)
   13. dplyr::group_by
   14. base::getExportedValue(pkg, name)
   15. base::asNamespace(ns)
   16. base::getNamespace(ns)
   17. base::loadNamespace(name)
   18. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: Test of segmentation/clustering (@test_segclust.R#19)  ------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. segclust2d::segclust(...)
    2. segclust2d::segclust.data.frame(...)
    3. segclust2d::segclust_internal(...)
    4. base::lapply(...)
    5. segclust2d:::FUN(X[[i]], ...)
    6. segclust2d::stat_segm(...)
    7. segclust2d::calc_stat_states(subdata, df.segm, diag.var, order.var)
   13. dplyr::group_by
   14. base::getExportedValue(pkg, name)
   15. base::asNamespace(ns)
   16. base::getNamespace(ns)
   17. base::loadNamespace(name)
   18. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 3 | FAILED: 2 ]
  1. Error: Test of segmentation (@test_segclust.R#7) 
  2. Error: Test of segmentation/clustering (@test_segclust.R#19) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'segclust.Rmd' using rmarkdown
Quitting from lines 71-72 (segclust.Rmd) 
Error: processing vignette 'segclust.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'segclust.Rmd'

SUMMARY: processing the following file failed:
  'segclust.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'segmentr.Rmd' using rmarkdown
Loading required package: segmentr
Loading required package: tidyr
Error: package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Loading required package: tibble
Loading required package: dplyr
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Loading required package: lubridate

Attaching package: 'lubridate'

The following objects are masked from 'package:base':

    date, intersect, setdiff, union

Loading required package: magrittr
Loading required package: purrr

Attaching package: 'purrr'

The following object is masked from 'package:magrittr':

    set_names

Quitting from lines 49-53 (segmentr.Rmd) 
Error: processing vignette 'segmentr.Rmd' failed with diagnostics:
could not find function "mutate"
--- failed re-building 'segmentr.Rmd'

SUMMARY: processing the following file failed:
  'segmentr.Rmd'

Error: Vignette re-building failed.
Execution halted
get.infectiousness: no visible global function definition for 'qchisq'
Undefined global functions or variables:
  qchisq
Consider adding
  importFrom("stats", "qchisq")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sejmRP.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
get_statistics_from_file: no visible global function definition for
  'read.csv'
glm_anova: no visible global function definition for 'aov'
glm_anova: no visible global function definition for 'glm'
glm_anova: no visible global function definition for 'gaussian'
glm_anova: no visible global function definition for 'anova'
glm_anova: no visible global function definition for 'quasipoisson'
glm_anova: no visible global function definition for 'sd'
glm_anova: no visible global function definition for 'p.adjust'
ttest_cohens_d: no visible global function definition for 't.test'
ttest_cohens_d: no visible global function definition for 'sd'
Undefined global functions or variables:
  anova aov gaussian glm p.adjust quasipoisson read.csv sd t.test
Consider adding
  importFrom("stats", "anova", "aov", "gaussian", "glm", "p.adjust",
             "quasipoisson", "sd", "t.test")
  importFrom("utils", "read.csv")
to your NAMESPACE file.
predict.SEL: warning in splineDesign(newdata, knots = knts, ord =
  object$nord, deriv = rep(deriv, length(newdata)), outer.ok = TRUE):
  partial argument match of 'deriv' to 'derivs'
getbinPost: no visible binding for global variable 'dbeta'
getbinPost: no visible binding for global variable 'pbeta'
getbinPost : fu: no visible global function definition for 'dbinom'
getbinPost : fu: no visible global function definition for 'predict'
getbinPost: no visible global function definition for 'integrate'
getbinPost: no visible global function definition for 'splinefun'
int.funct: no visible global function definition for 'integrate'
int.funct2: no visible global function definition for 'integrate'
min.abs: no visible global function definition for 'uniroot'
print.SEL: no visible global function definition for 'integrate'
print.summary.SEL : foo1: no visible global function definition for
  'predict'
print.summary.SEL : foo2: no visible global function definition for
  'predict'
print.summary.SEL: no visible global function definition for
  'integrate'
quantSEL: no visible global function definition for 'predict'
quantSEL: no visible global function definition for 'splinefun'
rvSEL: no visible global function definition for 'runif'
Undefined global functions or variables:
  dbeta dbinom integrate pbeta predict runif splinefun uniroot
Consider adding
  importFrom("stats", "dbeta", "dbinom", "integrate", "pbeta", "predict",
             "runif", "splinefun", "uniroot")
to your NAMESPACE file.
Package in Depends field not imported from: 'sem'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   6.7Mb
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'mvtnorm'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
ChiSquaredLRTest: no visible global function definition for 'na.omit'
ChiSquaredLRTest: no visible global function definition for 'cov'
ChiSquaredLRTest: no visible global function definition for 'dmvnorm'
ChiSquaredLRTest: no visible global function definition for 'pchisq'
NormalTheoryLRTest: no visible global function definition for 'na.omit'
NormalTheoryLRTest: no visible global function definition for 'cov'
NormalTheoryLRTest: no visible global function definition for 'dmvnorm'
NormalTheoryLRTest: no visible global function definition for 'sd'
NormalTheoryLRTest: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  cov dmvnorm na.omit pchisq pnorm sd
Consider adding
  importFrom("stats", "cov", "na.omit", "pchisq", "pnorm", "sd")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SemNeT.Rcheck/00install.out' for details.
'library' or 'require' calls in package code:
  'XML' 'boot' 'sem'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unexported objects imported by ':::' calls:
  'boot:::const' 'stats:::AIC.logLik' 'stats:::BIC.logLik'
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'addPath.plsm' 'endogenous' 'predecessors' 'qSquared' 'reorder'
  'resempls' 'residuals.sempls'
Package vignette with placeholder title 'Vignette Title':
  'introduction-to-package-SEMrushR-.Rmd'
Running examples in 'semTools-Ex.R' failed
The error most likely occurred in:

> ### Name: combinequark
> ### Title: Combine the results from the quark function
> ### Aliases: combinequark
> 
> ### ** Examples
> 
> 
> set.seed(123321)
> dat <- HolzingerSwineford1939[,7:15]
> misspat <- matrix(runif(nrow(dat) * 9) < 0.3, nrow(dat))
> dat[misspat] <- NA
> dat <- cbind(HolzingerSwineford1939[,1:3], dat)
> 
> quark.list <- quark(data = dat, id = c(1, 2))
Data Check Passed.
ID Check Passed.
Loading required namespace: mice
Failed with error:  'DLL 'dplyr' not found: maybe not installed for this architecture?'
The quark function requires the "mice" package to be installed.
> 
> final.data <- combinequark(quark = quark.list, percent = 80)
Error in if (pct[i] >= percent) { : argument is of length zero
Calls: combinequark
Execution halted
.plot_attachment: no visible global function definition for 'dev.off'
.update_list: no visible global function definition for 'modifyList'
mime_part.data.frame: no visible global function definition for
  'write.table'
mime_part.ggplot: no visible binding for global variable 'pdf'
mime_part.matrix: no visible global function definition for
  'write.table'
mime_part.trellis: no visible binding for global variable 'pdf'
Undefined global functions or variables:
  dev.off modifyList pdf write.table
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("utils", "modifyList", "write.table")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'rtiff' which was already attached by Depends.
  Please remove these calls from your code.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sensitivityCalibration.Rcheck/00install.out' for details.
gconv: no visible global function definition for 'convolve'
sens.analysis.aberrant.rank: no visible global function definition for
  'pnorm'
sens.analysis.mh: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  convolve pnorm
Consider adding
  importFrom("stats", "convolve", "pnorm")
to your NAMESPACE file.
mscorev: no visible global function definition for 'quantile'
senmwCI : funcCI: no visible global function definition for 'qnorm'
senmwCI : funcCI2: no visible global function definition for 'qnorm'
separable1k: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  pnorm qnorm quantile
Consider adding
  importFrom("stats", "pnorm", "qnorm", "quantile")
to your NAMESPACE file.
plot.sensitivity.2.0d: no visible global function definition for 'gray'
sensitivitySGD: no visible global function definition for 'tail'
sensitivitySGL: no visible global function definition for 'tail'
Undefined global functions or variables:
  gray tail
Consider adding
  importFrom("grDevices", "gray")
  importFrom("utils", "tail")
to your NAMESPACE file.
Found the following significant warnings:
  Warning: namespace 'dplyr' is not available and has been replaced
See 'd:/Rcompile/CRANpkg/local/4.0/sensitivity.Rcheck/00install.out' for details.
Warning: namespace 'dplyr' is not available and has been replaced
by .GlobalEnv when processing object '<unknown>'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    libs     6.0Mb
    models   1.3Mb
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data   2.3Mb
    libs   2.6Mb
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/seplyr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SeqDetect.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/seqest.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'Tutoriel.Rmd' using rmarkdown

TraMineR stable version 2.2-0.1 (Built: 2020-08-27)
Website: http://traminer.unige.ch
Please type 'citation("TraMineR")' for citation information.

TraMineRextras stable version 0.6.0 (Built: 2020-08-27)
Functions provided by this package are still in test
    and subject to changes in future releases.
This is WeightedCluster stable version 1.4-1 (Built: 2020-08-27)

To get the manuals, please run:
   vignette("WeightedCluster") ## Complete manual in English
   vignette("WeightedClusterFR") ## Complete manual in French
   vignette("WeightedClusterPreview") ## Short preview in English

To cite WeightedCluster in publications please use:
Studer, Matthias (2013). WeightedCluster Library Manual: A practical
   guide to creating typologies of trajectories in the social sciences
   with R. LIVES Working Papers, 24. doi:
   10.12682/lives.2296-1658.2013.24

Attaching package: 'ade4'

The following object is masked from 'package:FactoMineR':

    reconst

Quitting from lines 43-56 (Tutoriel.Rmd) 
Error: processing vignette 'Tutoriel.Rmd' failed with diagnostics:
package or namespace load failed for 'questionr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Tutoriel.Rmd'

SUMMARY: processing the following file failed:
  'Tutoriel.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is 10.5Mb
  sub-directories of 1Mb or more:
    doc    6.1Mb
    libs   3.6Mb
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data        1.4Mb
    sequences   1.9Mb
Package suggested but not available for checking: 'doMC'
installed size is  7.9Mb
  sub-directories of 1Mb or more:
    libs   6.6Mb
GNU make is a SystemRequirements.
installed size is  9.3Mb
  sub-directories of 1Mb or more:
    data   6.9Mb
    libs   2.0Mb
Malformed Title field: should not end in a period.
plotenz : addmark: no visible global function definition for 'par'
plotenz : addmark: no visible global function definition for 'text'
plotenz : addmark: no visible global function definition for 'segments'
plotenz : addband: no visible global function definition for 'segments'
plotenz : addband: no visible global function definition for 'text'
plotenz: no visible global function definition for 'layout'
plotenz: no visible global function definition for 'text'
plotenz: no visible global function definition for 'dev.new'
Undefined global functions or variables:
  dev.new layout par segments text
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "layout", "par", "segments", "text")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sergeant.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/servosphereR.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
capture: no visible binding for global variable 'resultText'
restore.session: no visible binding for global variable
  '.save.session.packages'
restore.session: no visible binding for global variable
  '.save.session.search'
save.session: no visible global function definition for 'dev.list'
save.session: no visible binding for '<<-' assignment to
  '.save.session.search'
save.session: no visible binding for '<<-' assignment to
  '.save.session.packages'
Undefined global functions or variables:
  .save.session.packages .save.session.search dev.list resultText
Consider adding
  importFrom("grDevices", "dev.list")
to your NAMESPACE file.
setpath: no visible global function definition for 'cov'
setpath: no visible global function definition for 'median'
setpath: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  cov median pchisq
Consider adding
  importFrom("stats", "cov", "median", "pchisq")
to your NAMESPACE file.
random.number.test: no visible global function definition for 'runif'
random.number.test: no visible global function definition for 'rnorm'
setRNG: no visible global function definition for 'runif'
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Package suggested but not available for checking: 'loomR'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Seurat.Rcheck/00install.out' for details.
'library' or 'require' call to 'graphics' which was already attached by Depends.
  Please remove these calls from your code.
severity: no visible global function definition for 'qnorm'
severity: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  pnorm qnorm
Consider adding
  importFrom("stats", "pnorm", "qnorm")
to your NAMESPACE file.
L_exp: no visible global function definition for 'pnorm'
L_hNV: no visible global function definition for 'pnorm'
L_trunc: no visible global function definition for 'pnorm'
L_trunc_mufest: no visible global function definition for 'pnorm'
dgp: no visible global function definition for 'runif'
dgp: no visible global function definition for 'rnorm'
eff.sfa: no visible global function definition for 'predict'
fitted.sfa: no visible global function definition for 'predict'
predict.sfa: no visible global function definition for 'coef'
print.sfa: no visible global function definition for 'coef'
residuals.sfa: no visible global function definition for 'fitted'
sfa: no visible global function definition for 'model.frame'
sfa: no visible global function definition for 'model.response'
sfa.fit: no visible global function definition for 'lm'
sfa.fit: no visible global function definition for 'resid'
sfa.fit: no visible global function definition for 'var'
sfa.fit: no visible global function definition for 'optim'
summary.sfa: no visible global function definition for 'logLik'
summary.sfa: no visible global function definition for 'pchisq'
te.eff.sfa: no visible global function definition for 'residuals'
te.eff.sfa: no visible global function definition for 'pnorm'
u.sfa: no visible global function definition for 'residuals'
u.sfa: no visible global function definition for 'dnorm'
u.sfa: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  coef dnorm fitted lm logLik model.frame model.response optim pchisq
  pnorm predict resid residuals rnorm runif var
Consider adding
  importFrom("stats", "coef", "dnorm", "fitted", "lm", "logLik",
             "model.frame", "model.response", "optim", "pchisq", "pnorm",
             "predict", "resid", "residuals", "rnorm", "runif", "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sfc.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sfdct.Rcheck/00install.out' for details.
installed size is 107.6Mb
  sub-directories of 1Mb or more:
    doc     13.1Mb
    gdal     2.1Mb
    libs    82.0Mb
    proj     6.0Mb
    sqlite   1.5Mb
Error(s) in re-building vignettes:
--- re-building 'sf1.Rmd' using rmarkdown
--- finished re-building 'sf1.Rmd'

--- re-building 'sf2.Rmd' using rmarkdown
--- finished re-building 'sf2.Rmd'

--- re-building 'sf3.Rmd' using rmarkdown
Quitting from lines 43-48 (sf3.Rmd) 
Error: processing vignette 'sf3.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'sf3.Rmd'

--- re-building 'sf4.Rmd' using rmarkdown
Quitting from lines 37-39 (sf4.Rmd) 
Error: processing vignette 'sf4.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'sf4.Rmd'

--- re-building 'sf5.Rmd' using rmarkdown
Quitting from lines 183-190 (sf5.Rmd) 
Error: processing vignette 'sf5.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'sf5.Rmd'

--- re-building 'sf6.Rmd' using rmarkdown
--- finished re-building 'sf6.Rmd'

--- re-building 'sf7.Rmd' using rmarkdown
--- finished re-building 'sf7.Rmd'

SUMMARY: processing the following files failed:
  'sf3.Rmd' 'sf4.Rmd' 'sf5.Rmd'

Error: Vignette re-building failed.
Execution halted
Malformed Description field: should contain one or more complete sentences.
.computePStar: no visible global function definition for 'uniroot'
plotBoundary: no visible global function definition for
  'scale_y_continuous'
Undefined global functions or variables:
  scale_y_continuous uniroot
Consider adding
  importFrom("stats", "uniroot")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sGMRFmix.Rcheck/00install.out' for details.
installed size is  7.9Mb
  sub-directories of 1Mb or more:
    data   7.8Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SGP.Rcheck/00install.out' for details.
amse: no visible global function definition for 'na.omit'
arb: no visible global function definition for 'na.omit'
rdatagen: no visible global function definition for 'qnorm'
rdatagen: no visible global function definition for 'pbinom'
rdatagen: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  na.omit pbinom pnorm qnorm
Consider adding
  importFrom("stats", "na.omit", "pbinom", "pnorm", "qnorm")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'foreign' which was already attached by Depends.
  Please remove these calls from your code.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SHAPforxgboost.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'hydromad'
Running 'testthat.R' [1s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(dplyr)
  Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'get_started.Rmd' using rmarkdown
Quitting from lines 21-25 (get_started.Rmd) 
Error: processing vignette 'get_started.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'get_started.Rmd'

SUMMARY: processing the following file failed:
  'get_started.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/shazam.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SHELF.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/shinipsum.Rcheck/00install.out' for details.
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    www   7.3Mb
Running examples in 'shinyaframe-Ex.R' failed
The error most likely occurred in:

> ### Name: aDataScene
> ### Title: A-Frame Scene with R data
> ### Aliases: aDataScene
> 
> ### ** Examples
> 
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
popify: no visible global function definition for 'runif'
tipify: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/shinyEventLogger.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/shinyHeatmaply.Rcheck/00install.out' for details.
Package vignette with placeholder title 'Vignette Title':
  'SI.Rmd'
Running examples in 'shinyjqui-Ex.R' failed
The error most likely occurred in:

> ### Name: Interactions
> ### Title: Mouse interactions
> ### Aliases: Interactions jqui_draggabled jqui_droppabled jqui_resizabled
> ###   jqui_selectabled jqui_sortabled jqui_draggable jqui_droppable
> ###   jqui_resizable jqui_selectable jqui_sortable
> 
> ### ** Examples
> 
> library(shiny)
> library(highcharter)
Error: package or namespace load failed for 'highcharter' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/shinyloadtest.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/shinyML.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/shinyMolBio.Rcheck/00install.out' for details.
Running examples in 'shinyNotes-Ex.R' failed
The error most likely occurred in:

> ### Name: connect_sqlite
> ### Title: Connect to an SQLite database
> ### Aliases: connect_sqlite
> 
> ### ** Examples
> 
> connect_sqlite()
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: connect_sqlite ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/shinyobjects.Rcheck/00install.out' for details.
installed size is 11.1Mb
  sub-directories of 1Mb or more:
    R     1.7Mb
    www   8.3Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/shinyrecipes.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/shinyr.Rcheck/00install.out' for details.
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    www   8.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/shinySIR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/shinystan.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ShinyTester.Rcheck/00install.out' for details.
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(shinyypr)
  > 
  > test_check("shinyypr")
  -- 1. Error: ui input functions work  ------------------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. dplyr::left_join
   2. base::getExportedValue(pkg, name)
   3. base::asNamespace(ns)
   4. base::getNamespace(ns)
   5. base::loadNamespace(name)
   6. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 105 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: ui input functions work 
  
  Error: testthat unit tests failed
  Execution halted
shrink.estim: no visible global function definition for 'cov'
shrink.estim: no visible global function definition for 'cor'
shrink.estim: no visible global function definition for 'cov2cor'
targetCor: no visible global function definition for 'cor.test'
targetCor: no visible global function definition for 'cor'
targetCor: no visible global function definition for 'sd'
targetCor: no visible global function definition for 'cov'
targetD: no visible binding for global variable 'var'
targetF: no visible global function definition for 'cov'
targetF: no visible global function definition for 'cor'
targetG: no visible global function definition for 'cor'
targetG: no visible global function definition for 'sd'
targetG: no visible global function definition for 'cov'
targetGpos: no visible global function definition for 'cor'
targetGpos: no visible global function definition for 'sd'
targetGpos: no visible global function definition for 'cov'
targetGstar: no visible global function definition for 'cor'
targetGstar: no visible global function definition for 'sd'
targetGstar: no visible global function definition for 'cov'
Undefined global functions or variables:
  cor cor.test cov cov2cor sd var
Consider adding
  importFrom("stats", "cor", "cor.test", "cov", "cov2cor", "sd", "var")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'sprint-corrections.Rmd' using rmarkdown
Quitting from lines 33-50 (sprint-corrections.Rmd) 
Error: processing vignette 'sprint-corrections.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'sprint-corrections.Rmd'

SUMMARY: processing the following file failed:
  'sprint-corrections.Rmd'

Error: Vignette re-building failed.
Execution halted
Depends: includes the non-default packages:
  'hdrcde', 'coda', 'MASS', 'bayesm', 'mnormt', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Malformed Description field: should contain one or more complete sentences.
Packages in Depends field not imported from:
  'MASS' 'bayesm' 'coda' 'hdrcde' 'mnormt' 'spatstat'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SIBER.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'ade4' 'corpcor'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
filter.PCA.default: no visible global function definition for
  'princomp'
filter.mRMR.default: no visible global function definition for
  'discretize'
gaussian.default: no visible global function definition for 'cov'
gaussian.default: no visible global function definition for
  'cov.shrink'
plot.verify.cv: no visible global function definition for 'points'
plot.verify.ho: no visible global function definition for 'points'
plot.verify.loo: no visible global function definition for 'points'
predict.dpa1: no visible global function definition for 'cor'
predict.filter.PCA: no visible global function definition for 'predict'
predict.filter.RegressionTreeFilter: no visible global function
  definition for 'is.struct'
predict.filter.RegressionTreeFilter: no visible global function
  definition for 'var'
simulator.Simple1: no visible global function definition for 'rnorm'
verify.ho.default: no visible global function definition for 'predict'
verify.loo.default: no visible global function definition for 'predict'
Undefined global functions or variables:
  cor cov cov.shrink discretize is.struct points predict princomp rnorm
  var
Consider adding
  importFrom("graphics", "points")
  importFrom("stats", "cor", "cov", "predict", "princomp", "rnorm",
             "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sidier.Rcheck/00install.out' for details.
dSepAdji: no visible global function definition for 'as'
dag2cpdagAdj: no visible global function definition for 'as'
randomDAG: no visible global function definition for 'rbinom'
structIntervDist: no visible global function definition for 'as'
Undefined global functions or variables:
  as rbinom
Consider adding
  importFrom("methods", "as")
  importFrom("stats", "rbinom")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
.cluster: no visible global function definition for 'kmeans'
.plot.sigclust: no visible global function definition for 'par'
.plot.sigclust: no visible global function definition for 'density'
.plot.sigclust: no visible global function definition for 'runif'
.plot.sigclust: no visible global function definition for 'dnorm'
.plot.sigclust: no visible global function definition for 'lines'
.plot.sigclust: no visible global function definition for 'points'
.plot.sigclust: no visible global function definition for 'title'
.plot.sigclust: no visible global function definition for 'text'
.plot.sigclust: no visible global function definition for 'qnorm'
.plot.sigclust: no visible global function definition for 'abline'
.plot.sigclust: no visible global function definition for 'quantile'
.plot.sigclust: no visible global function definition for 'legend'
.simnull: no visible global function definition for 'rnorm'
.vareigen: no visible global function definition for 'mad'
.vareigen: no visible global function definition for 'cov'
sigclust: no visible global function definition for 'sd'
sigclust: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  abline cov density dnorm kmeans legend lines mad par pnorm points
  qnorm quantile rnorm runif sd text title
Consider adding
  importFrom("graphics", "abline", "legend", "lines", "par", "points",
             "text", "title")
  importFrom("stats", "cov", "density", "dnorm", "kmeans", "mad",
             "pnorm", "qnorm", "quantile", "rnorm", "runif", "sd")
to your NAMESPACE file.
Running examples in 'sigmajs-Ex.R' failed
The error most likely occurred in:

> ### Name: sg_add_nodes
> ### Title: Add nodes and edges
> ### Aliases: sg_add_nodes sg_add_edges
> 
> ### ** Examples
> 
> # initial nodes
> nodes <- sg_make_nodes()
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: sg_make_nodes ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Package vignette with placeholder title 'Vignette Title':
  'getting-started.Rmd'
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    extdata   3.5Mb
    libs      2.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Signac.Rcheck/00install.out' for details.
signmedian.test: no visible global function definition for 'median'
signmedian.test: no visible global function definition for 'binom.test'
signmedian.test: no visible global function definition for 'pbinom'
signmedian.test: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  binom.test median pbinom pnorm
Consider adding
  importFrom("stats", "binom.test", "median", "pbinom", "pnorm")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'signs.Rmd' using rmarkdown
Quitting from lines 18-23 (signs.Rmd) 
Error: processing vignette 'signs.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'signs.Rmd'

SUMMARY: processing the following file failed:
  'signs.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   6.2Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SigTree.Rcheck/00install.out' for details.
'library' or 'require' calls in package code:
  'gdata' 'splines'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
plot.SII: no visible global function definition for 'lines'
plot.SII: no visible global function definition for 'abline'
plot.SII: no visible global function definition for 'legend'
sii : approx.l: no visible global function definition for 'approx'
sii.excel: no visible global function definition for 'predict'
sii.excel : approx.l: no visible global function definition for
  'approx'
Undefined global functions or variables:
  abline approx legend lines predict
Consider adding
  importFrom("graphics", "abline", "legend", "lines")
  importFrom("stats", "approx", "predict")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/silicate.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sim2Dpredictr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SimBIID.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SimDesign.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SimDissolution.Rcheck/00install.out' for details.
Running examples in 'simfinR-Ex.R' failed
The error most likely occurred in:

> ### Name: simfinR_period_to_date
> ### Title: Period to date
> ### Aliases: simfinR_period_to_date
> 
> ### ** Examples
> 
> first_quarter <- simfinR_period_to_date('Q1', 2019)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: simfinR_period_to_date ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
getFormula: no visible global function definition for 'as.formula'
internalSimXyplot : f: no visible global function definition for
  'median'
runSimulation: no visible global function definition for 'runif'
setup: no visible global function definition for 'runif'
clusterSetup,ANY-data.frame-SampleControl: no visible binding for
  global variable 'cnam'
clusterSetup,ANY-data.frame-TwoStageControl: no visible binding for
  global variable 'cnam'
initialize,DCARContControl: no visible binding for global variable
  'rnorm'
initialize,DataControl: no visible binding for global variable 'rnorm'
Undefined global functions or variables:
  as.formula cnam median rnorm runif
Consider adding
  importFrom("stats", "as.formula", "median", "rnorm", "runif")
to your NAMESPACE file.
GNU make is a SystemRequirements.
Error(s) in re-building vignettes:
--- re-building 'simFrame-eusilc.Rnw' using Sweave
Loading required package: Rcpp
Loading required package: lattice
Loading required package: parallel
--- finished re-building 'simFrame-eusilc.Rnw'

--- re-building 'simFrame-intro.Rnw' using Sweave
Loading required package: Rcpp
Loading required package: lattice
Loading required package: parallel
Loading required package: ggplot2
Loading required package: pls

Attaching package: 'pls'

The following object is masked from 'package:stats':

    loadings

Loading required package: data.table
sROC 0.1-2 loaded

Error: processing vignette 'simFrame-intro.Rnw' failed with diagnostics:
 chunk 23 
Error : package or namespace load failed for 'robCompositions' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?

--- failed re-building 'simFrame-intro.Rnw'

SUMMARY: processing the following file failed:
  'simFrame-intro.Rnw'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/simglm.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/simhelpers.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/simITS.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
Running examples in 'simmer.plot-Ex.R' failed
The error most likely occurred in:

> ### Name: plot.mon
> ### Title: Plot Methods for 'simmer' Monitoring Statistics
> ### Aliases: plot.mon plot.arrivals plot.attributes plot.resources
> 
> ### ** Examples
> 
> t0 <- trajectory("my trajectory") %>%
+   ## add an intake activity
+   seize("nurse", 1) %>%
+   timeout(function() rnorm(1, 15)) %>%
+   release("nurse", 1) %>%
+   ## add a consultation activity
+   seize("doctor", 1) %>%
+   timeout(function() rnorm(1, 20)) %>%
+   release("doctor", 1) %>%
+   ## add a planning activity
+   seize("administration", 1) %>%
+   timeout(function() rnorm(1, 5)) %>%
+   release("administration", 1)
> 
> env <- simmer("SuperDuperSim") %>%
+   add_resource("nurse", 1) %>%
+   add_resource("doctor", 2) %>%
+   add_resource("administration", 1) %>%
+   add_generator("patient", t0, function() rnorm(1, 10, 2)) %>%
+   run(until=80)
> 
> resources <- get_mon_resources(env)
> arrivals <- get_mon_arrivals(env)
> 
> plot(resources, metric="usage", "doctor", items = "server", steps = TRUE)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: plot ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'plot.simmer.Rmd' using rmarkdown
Loading required package: ggplot2

Attaching package: 'simmer.plot'

The following objects are masked from 'package:simmer':

    get_mon_arrivals, get_mon_attributes, get_mon_resources

Quitting from lines 72-76 (plot.simmer.Rmd) 
Error: processing vignette 'plot.simmer.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'plot.simmer.Rmd'

--- re-building 'plot.trajectory.Rmd' using rmarkdown
--- finished re-building 'plot.trajectory.Rmd'

SUMMARY: processing the following file failed:
  'plot.simmer.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    doc    1.8Mb
    libs   3.4Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/simmr.Rcheck/00install.out' for details.
cumallcausehr: no visible global function definition for 'integrate'
plotbe: no visible global function definition for 'lines'
plotbe: no visible global function definition for 'legend'
plotcph: no visible global function definition for 'confint'
plotcph: no visible global function definition for 'abline'
plotcph: no visible global function definition for 'axis'
plotcph: no visible global function definition for 'polygon'
plotcph: no visible global function definition for 'lines'
simCR: no visible global function definition for 'rnorm'
simEBMT: no visible global function definition for 'model.matrix'
simexit: no visible global function definition for 'runif'
simexitinner: no visible global function definition for 'uniroot'
Undefined global functions or variables:
  abline axis confint integrate legend lines model.matrix polygon rnorm
  runif uniroot
Consider adding
  importFrom("graphics", "abline", "axis", "legend", "lines", "polygon")
  importFrom("stats", "confint", "integrate", "model.matrix", "rnorm",
             "runif", "uniroot")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'simPATHy.Rmd' using rmarkdown
Quitting from lines 252-258 (simPATHy.Rmd) 
Error: processing vignette 'simPATHy.Rmd' failed with diagnostics:
package or namespace load failed for 'topologyGSA' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'simPATHy.Rmd'

SUMMARY: processing the following file failed:
  'simPATHy.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/simPH.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/simplecolors.Rcheck/00install.out' for details.
File
  LICENSE
is not mentioned in the DESCRIPTION file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/simplevis.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SimplifyStats.Rcheck/00install.out' for details.
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   2.0Mb
    libs   2.2Mb
Package in Depends field not imported from: 'mclust'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Simpsons: no visible global function definition for 'Mclust'
Simpsons: no visible global function definition for 'lm'
Simpsons: no visible global function definition for 'abline'
Simpsons: no visible global function definition for 'par'
Simpsons: no visible global function definition for 'legend'
Simpsons: no visible global function definition for 'txtProgressBar'
Simpsons: no visible global function definition for 'setTxtProgressBar'
Simpsons: no visible global function definition for 'quantile'
plot.Simpson: no visible global function definition for 'lm'
plot.Simpson: no visible global function definition for 'abline'
plot.Simpson: no visible global function definition for 'par'
plot.Simpson: no visible global function definition for 'legend'
Undefined global functions or variables:
  Mclust abline legend lm par quantile setTxtProgressBar txtProgressBar
Consider adding
  importFrom("graphics", "abline", "legend", "par")
  importFrom("stats", "lm", "quantile")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/simrel.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SimRVSequences.Rcheck/00install.out' for details.
Running examples in 'simstandard-Ex.R' failed
The error most likely occurred in:

> ### Name: add_factor_scores
> ### Title: Add factor scores to observed data
> ### Aliases: add_factor_scores
> 
> ### ** Examples
> 
> library(simstandard)
> # lavaan model
> m = "
+ X =~ 0.9 * X1 + 0.8 * X2 + 0.7 * X3
+ "
> 
> # Make data.frame for two cases
> d <- data.frame(
+   X1 = c(1.2, -1.2),
+   X2 = c(1.5, -1.8),
+   X3 = c(1.8, -1.1))
> 
> # Compute factor scores for two cases
> add_factor_scores(d, m)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: add_factor_scores ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(simstandard)
  > 
  > test_check("simstandard")
  -- 1. Error: correlation model (@testthat.R#8)  --------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_equal(...)
    4. simstandard::sim_standardized_matrices(m)
    5. simstandard::fixed2free(m)
    4. lavaan::lavaanify(., fixed.x = FALSE)
   11. dplyr::filter(., .data$lhs != .data$rhs)
   14. base::getExportedValue(pkg, name)
   15. base::asNamespace(ns)
   16. base::getNamespace(ns)
   17. base::loadNamespace(name)
   18. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: composites (@testthat.R#18)  --------------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. simstandard::sim_standardized_matrices(m)
    2. simstandard::fixed2free(m)
    3. lavaan::lavaanify(., fixed.x = FALSE)
   10. dplyr::filter(., .data$lhs != .data$rhs)
   11. base::getExportedValue(pkg, name)
   12. base::asNamespace(ns)
   13. base::getNamespace(ns)
   14. base::loadNamespace(name)
   15. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: correlation model (@testthat.R#8) 
  2. Error: composites (@testthat.R#18) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'simstandard_tutorial.Rmd' using rmarkdown
Quitting from lines 16-38 (simstandard_tutorial.Rmd) 
Error: processing vignette 'simstandard_tutorial.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'simstandard_tutorial.Rmd'

SUMMARY: processing the following file failed:
  'simstandard_tutorial.Rmd'

Error: Vignette re-building failed.
Execution halted
Found the following hidden files and directories:
  vignettes/.Rhistory
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  'abind' 'svUnit'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
simSummary: no visible global function definition for 'abind'
simSummary_unitTests: no visible global function definition for
  'clearLog'
simSummary_unitTests: no visible global function definition for
  'runTest'
simSummary_unitTests: no visible global function definition for
  'svSuite'
simSummary_unitTests: no visible global function definition for 'Log'
simSummary_unitTests: no visible global function definition for 'stats'
simSummary_unitTests: no visible global function definition for
  'metadata'
simSummary_unitTests: no visible global function definition for
  'errorLog'
Undefined global functions or variables:
  Log abind clearLog errorLog metadata runTest stats svSuite
Error(s) in re-building vignettes:
--- re-building 'simsurv_technical.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
--- finished re-building 'simsurv_technical.Rmd'

--- re-building 'simsurv_usage.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Loading required package: survival
Quitting from lines 15-23 (simsurv_usage.Rmd) 
Error: processing vignette 'simsurv_usage.Rmd' failed with diagnostics:
package or namespace load failed for 'flexsurv' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'simsurv_usage.Rmd'

SUMMARY: processing the following file failed:
  'simsurv_usage.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/simTool.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/simts.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SingleCaseES.Rcheck/00install.out' for details.
plotBGpvalues: no visible global function definition for 'par'
plotBGpvalues: no visible global function definition for 'title'
plotBGpvalues: no visible global function definition for 'axis'
plotBGpvalues: no visible binding for global variable 'abline'
plotBGpvalues: no visible global function definition for 'box'
plotCGpvalues: no visible global function definition for 'par'
plotCGpvalues: no visible global function definition for 'title'
plotCGpvalues: no visible global function definition for 'axis'
plotCGpvalues: no visible binding for global variable 'abline'
plotCGpvalues: no visible global function definition for 'box'
plotDAGpvalues: no visible global function definition for 'par'
plotDAGpvalues: no visible global function definition for 'title'
plotDAGpvalues: no visible global function definition for 'axis'
plotDAGpvalues: no visible binding for global variable 'abline'
plotDAGpvalues: no visible global function definition for 'box'
plotUGpvalues: no visible global function definition for 'par'
plotUGpvalues: no visible global function definition for 'title'
plotUGpvalues: no visible global function definition for 'axis'
plotUGpvalues: no visible binding for global variable 'abline'
plotUGpvalues: no visible global function definition for 'box'
simpvalueVec: no visible binding for global variable 'pnorm'
sinBG: no visible global function definition for 'cov2cor'
sinCG : sinAMP: no visible global function definition for 'cov2cor'
sinCG : sinLWF: no visible global function definition for 'cov2cor'
sinDAG: no visible global function definition for 'cov2cor'
sinUG: no visible global function definition for 'cov2cor'
Undefined global functions or variables:
  abline axis box cov2cor par pnorm title
Consider adding
  importFrom("graphics", "abline", "axis", "box", "par", "title")
  importFrom("stats", "cov2cor", "pnorm")
to your NAMESPACE file.
installed size is  6.9Mb
  sub-directories of 1Mb or more:
    R      1.9Mb
    libs   3.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sismonr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sistec.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sitar.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SiteAdapt.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Running examples in 'sjlabelled-Ex.R' failed
The error most likely occurred in:

> ### Name: as_factor
> ### Title: Convert variable into factor and keep value labels
> ### Aliases: as_factor to_factor as_factor.data.frame
> 
> ### ** Examples
> 
> library(sjmisc)
Error: package or namespace load failed for 'sjmisc' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sjmisc.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sjPlot.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sjstats.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'parallel'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
cvskda: no visible global function definition for 'detectCores'
cvskda: no visible global function definition for 'makeCluster'
cvskda: no visible global function definition for 'clusterApplyLB'
cvskda: no visible global function definition for 'mclapply'
cvskda: no visible global function definition for 'stopCluster'
Undefined global functions or variables:
  clusterApplyLB detectCores makeCluster mclapply stopCluster
Running examples in 'skedastic-Ex.R' failed
The error most likely occurred in:

> ### Name: anscombe
> ### Title: Anscombe's Test for Heteroskedasticity in a Linear Regression
> ###   Model
> ### Aliases: anscombe
> 
> ### ** Examples
> 
> mtcars_lm <- lm(mpg ~ wt + qsec + am, data = mtcars)
> anscombe(mtcars_lm)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: anscombe ... loadNamespace -> namespaceImport -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/skewlmm.Rcheck/00install.out' for details.
dskt: no visible global function definition for 'dt'
pskt: no visible global function definition for 'pt'
qskt: no visible global function definition for 'qt'
rskt: no visible global function definition for 'runif'
Undefined global functions or variables:
  dt pt qt runif
Consider adding
  importFrom("stats", "dt", "pt", "qt", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/skimr.Rcheck/00install.out' for details.
Package which this enhances but not available for checking: 'kmndirs'
Unavailable namespace imported from by a ':::' call: 'kmndirs'
  See the note in ?`:::` about the use of this operator.
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/skynet.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/slackr.Rcheck/00install.out' for details.
slcestimates: no visible global function definition for 'par'
slcestimates: no visible global function definition for 'abline'
slcestimates: no visible global function definition for 'lines'
slcestimates: no visible global function definition for 'axis'
slcestimates: no visible global function definition for 'points'
slcestimates: no visible global function definition for 'title'
Undefined global functions or variables:
  abline axis lines par points title
Consider adding
  importFrom("graphics", "abline", "axis", "lines", "par", "points",
             "title")
to your NAMESPACE file.
Running examples in 'SLEMI-Ex.R' failed
The error most likely occurred in:

> ### Name: capacity_logreg_algorithm
> ### Title: Main algorithm to calculate channel capacity by SLEMI approach
> ### Aliases: capacity_logreg_algorithm
> 
> ### ** Examples
> 
> tempdata=data_example1
> outputCLR1=capacity_logreg_algorithm(data=tempdata, signal="signal", response="response",
+ formula_string = "signal~response")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: capacity_logreg_algorithm ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'vignette.Rmd' using rmarkdown
Quitting from lines 321-328 (vignette.Rmd) 
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'vignette.Rmd'

SUMMARY: processing the following file failed:
  'vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc   3.7Mb
Error(s) in re-building vignettes:
--- re-building 'rowwise.Rmd' using rmarkdown
Quitting from lines 20-22 (rowwise.Rmd) 
Error: processing vignette 'rowwise.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'rowwise.Rmd'

--- re-building 'slider.Rmd' using rmarkdown
Quitting from lines 20-23 (slider.Rmd) 
Error: processing vignette 'slider.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'slider.Rmd'

SUMMARY: processing the following files failed:
  'rowwise.Rmd' 'slider.Rmd'

Error: Vignette re-building failed.
Execution halted
Running 'spelling.R' [0s]
  Running 'testthat.R' [33s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(SLOPE)
  > 
  > test_check("SLOPE")
  -- 1. Error: model training with caret works (@test-caret-training.R#4)  -------
  package or namespace load failed for 'caret' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(caret)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 90 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: model training with caret works (@test-caret-training.R#4) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/smacof.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/smartdata.Rcheck/00install.out' for details.
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    data   8.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/smartR.Rcheck/00install.out' for details.
File 'smco/R/smco.R':
  .onAttach calls:
    cat(paste("This is smco package", version, "\n"))

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.

smco: no visible global function definition for 'runif'
smco: no visible global function definition for 'rnorm'
smco: no visible global function definition for 'qnorm'
smco: no visible global function definition for 'pnorm'
smco: no visible global function definition for 'optim'
Undefined global functions or variables:
  optim pnorm qnorm rnorm runif
Consider adding
  importFrom("stats", "optim", "pnorm", "qnorm", "rnorm", "runif")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
File 'SMC/R/zzz.R':
  .onLoad calls:
    packageStartupMessage("##\n", "## Sequential Monte Carlo Package (SMC)\n",     "##\n", "## Functionality: sequential Monte Carlo (SMC) or sequential importance\n",     "## sampling (SIS) or hidden Markov models (HMM), particle filter (PF)\n",     "## and auxiliary particle filter (APF)\n", "##\n", "## Use: \"help(package = SMC)\" at the R prompt for more info\n",     "##\n", "## Copyright (C) 2006-", this.year, " Gopi Goswami\n",     "##\n", "##    Created by: Gopi Goswami <goswami@stat.harvard.edu>\n",     "## Maintained by: Gopi Goswami <grgoswami@gmail.com>\n",     "##\n")

See section 'Good practice' in '?.onAttach'.

.MHUpdateFuncGen.PF : MHUpdateFunc: no visible global function
  definition for 'runif'
MarkovSwitchingFuncGenerator : generateNextStreamsFunc: no visible
  global function definition for 'runif'
MarkovSwitchingFuncGenerator: no visible global function definition for
  'rnorm'
MarkovSwitchingFuncGenerator: no visible global function definition for
  'runif'
MarkovSwitchingFuncGenerator : logObsDensFunc: no visible global
  function definition for 'dnorm'
MarkovSwitchingFuncGenerator : propagateFunc: no visible global
  function definition for 'dnorm'
MarkovSwitchingFuncGenerator : propagateFunc: no visible global
  function definition for 'runif'
Undefined global functions or variables:
  dnorm rnorm runif
Consider adding
  importFrom("stats", "dnorm", "rnorm", "runif")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
em: no visible global function definition for 'coxph'
em: no visible global function definition for 'optim'
plotpredictsmcure: no visible global function definition for 'matplot'
plotpredictsmcure: no visible global function definition for 'lines'
smcure: no visible binding for global variable 'na.omit'
smcure: no visible global function definition for 'model.frame'
smcure: no visible global function definition for 'model.extract'
smcure: no visible global function definition for 'model.matrix'
smcure: no visible global function definition for 'coxph'
smcure: no visible global function definition for 'survreg'
smcure: no visible binding for global variable 'var'
smcure: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  coxph lines matplot model.extract model.frame model.matrix na.omit
  optim pnorm survreg var
Consider adding
  importFrom("graphics", "lines", "matplot")
  importFrom("stats", "model.extract", "model.frame", "model.matrix",
             "na.omit", "optim", "pnorm", "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SMDIC.Rcheck/00install.out' for details.
Grad.sph: no visible global function definition for 'dist'
IMDS: no visible global function definition for 'cmdscale'
IMDS: no visible global function definition for 'as.dist'
IMDS: no visible global function definition for 'runif'
IMDS: no visible global function definition for 'optim'
idistSph: no visible global function definition for 'dist'
obj.sph: no visible global function definition for 'dist'
plot.imds: no visible binding for global variable 'lines'
plot.imds: no visible global function definition for 'text'
plot.imds: no visible global function definition for 'rect'
Undefined global functions or variables:
  as.dist cmdscale dist lines optim rect runif text
Consider adding
  importFrom("graphics", "lines", "rect", "text")
  importFrom("stats", "as.dist", "cmdscale", "dist", "optim", "runif")
to your NAMESPACE file.
'library' or 'require' calls to packages already attached by Depends:
  'ggplot2' 'reshape'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'corpcor' 'ggplot2' 'reshape'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/smicd.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
lines.SmithWilsonYieldCurve: no visible global function definition for
  'lines'
points.SmithWilsonYieldCurve: no visible global function definition for
  'points'
Undefined global functions or variables:
  lines points
Consider adding
  importFrom("graphics", "lines", "points")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SMMT.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/smog.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'rPython'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/smoof.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Fourier2d: no visible global function definition for 'fft'
kernel2dsmooth: no visible global function definition for 'fft'
Undefined global functions or variables:
  fft
Consider adding
  importFrom("stats", "fft")
to your NAMESPACE file.
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc    2.5Mb
    libs   3.1Mb
Running examples in 'smovie-Ex.R' failed
The error most likely occurred in:

> ### Name: ett
> ### Title: Extremal Types Theorem (ETT)
> ### Aliases: ett
> 
> ### ** Examples
> 
> # Exponential data: xi = 0
> ett()
Error: the revdbayes package is needed. Please install it.
Execution halted
Running examples in 'smpic-Ex.R' failed
The error most likely occurred in:

> ### Name: smpic_save
> ### Title: Save a social media sized ggplot
> ### Aliases: smpic_save
> 
> ### ** Examples
> 
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(smpic)
  > 
  > test_check("smpic")
  -- 1. Error: (unknown) (@test-functions.R#3)  ----------------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test-functions.R#3) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'make_a_social_media_plot.Rmd' using rmarkdown
Quitting from lines 20-23 (make_a_social_media_plot.Rmd) 
Error: processing vignette 'make_a_social_media_plot.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'make_a_social_media_plot.Rmd'

SUMMARY: processing the following file failed:
  'make_a_social_media_plot.Rmd'

Error: Vignette re-building failed.
Execution halted
Malformed Description field: should contain one or more complete sentences.
dNMR: no visible global function definition for 'pnorm'
dNMR: no visible global function definition for 'dnorm'
pNMR: no visible global function definition for 'pnorm'
pNMR: no visible global function definition for 'dnorm'
rMR: no visible global function definition for 'rnorm'
rMR: no visible global function definition for 'rchisq'
Undefined global functions or variables:
  dnorm pnorm rchisq rnorm
Consider adding
  importFrom("stats", "dnorm", "pnorm", "rchisq", "rnorm")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
SMVar.paired : <anonymous>: no visible global function definition for
  'var'
SMVar.paired: no visible global function definition for 'var'
SMVar.paired: no visible global function definition for 'pt'
SMVar.paired: no visible global function definition for 'p.adjust'
SMVar.paired: no visible global function definition for 'write.table'
SMVar.unpaired : <anonymous>: no visible global function definition for
  'var'
SMVar.unpaired: no visible global function definition for 'var'
SMVar.unpaired: no visible global function definition for 'pt'
SMVar.unpaired: no visible global function definition for 'p.adjust'
SMVar.unpaired: no visible global function definition for 'write.table'
Undefined global functions or variables:
  p.adjust pt var write.table
Consider adding
  importFrom("stats", "p.adjust", "pt", "var")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/snahelper.Rcheck/00install.out' for details.
Warnings in file 'R/replace_special_characters_internal.R':
  unable to translate '<U+00C4>' to native encoding
  unable to translate '<U+00D6>' to native encoding
  unable to translate '<U+00DC>' to native encoding
  unable to translate '<U+00E4>' to native encoding
  unable to translate '<U+00F6>' to native encoding
  unable to translate '<U+00FC>' to native encoding
  unable to translate '<U+00DF>' to native encoding
  unable to translate '<U+00C6>' to native encoding
  unable to translate '<U+00E6>' to native encoding
  unable to translate '<U+00D8>' to native encoding
  unable to translate '<U+00F8>' to native encoding
  unable to translate '<U+00C5>' to native encoding
  unable to translate '<U+00E5>' to native encoding
  unable to translate '<U+00C6>' to native encoding
  unable to translate '<U+00E6>' to native encoding
  unable to translate '<U+00D8>' to native encoding
  unable to translate '<U+00F8>' to native encoding
  unable to translate '<U+00C6>' to native encoding
  unable to translate '<U+00E6>' to native encoding
  unable to translate '<U+00D8>' to native encoding
  unable to translate '<U+00F8>' to native encoding
  unable to translate '<U+00C5>' to native encoding
  unable to translate '<U+00E5>' to native encoding
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  > library("tibble")
  > library("snakecase")
  > 
  > 
  > test_check("snakecase")
  -- 1. Error: expand.grid (@test-to_any_case.R#674)  ----------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_equal(...)
    4. purrrlyr::invoke_rows
    5. base::getExportedValue(pkg, name)
    6. base::asNamespace(ns)
    7. base::getNamespace(ns)
    8. base::loadNamespace(name)
   11. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   12. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 213 | SKIPPED: 3 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: expand.grid (@test-to_any_case.R#674) 
  
  Error: testthat unit tests failed
  Execution halted
Malformed Description field: should contain one or more complete sentences.
Malformed Title field: should not end in a period.
Package in Depends field not imported from: 'snow'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
KS.test: no visible global function definition for 'quantile'
KS.test : Fgaus: no visible global function definition for 'pnorm'
KS.test: no visible global function definition for 'setNames'
cs.test: no visible global function definition for 'pbinom'
cs.test: no visible global function definition for 'pnorm'
cs.test: no visible global function definition for 'setNames'
kde: no visible global function definition for 'quantile'
kde : Fgaus: no visible global function definition for 'pnorm'
kde: no visible global function definition for 'par'
kre: no visible global function definition for 'quantile'
kre: no visible global function definition for 'lines'
ns.test: no visible global function definition for 'complete.cases'
ns.test: no visible global function definition for 'qnorm'
ns.test: no visible global function definition for 'pnorm'
ns.test: no visible global function definition for 'pchisq'
ns.test: no visible global function definition for 'setNames'
ns.test: no visible global function definition for 'qt'
quant.test: no visible global function definition for 'complete.cases'
quant.test: no visible global function definition for 'pbinom'
quant.test: no visible global function definition for 'pnorm'
quant.test: no visible global function definition for 'setNames'
quant.test: no visible global function definition for 'quantile'
quant.test: no visible global function definition for 'phyper'
runs.test: no visible global function definition for 'median'
runs.test: no visible global function definition for 'setNames'
runs.test: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  complete.cases lines median par pbinom pchisq phyper pnorm qnorm qt
  quantile setNames
Consider adding
  importFrom("graphics", "lines", "par")
  importFrom("stats", "complete.cases", "median", "pbinom", "pchisq",
             "phyper", "pnorm", "qnorm", "qt", "quantile", "setNames")
to your NAMESPACE file.
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    extdata   3.1Mb
    libs      2.2Mb
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: suppressMessages ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RSQLite
Error: package or namespace load failed for 'snplist' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
** DONE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'mvtnorm' 'combinat'
A package should be listed in only one of these fields.
chisq.test.a: no visible global function definition for 'chisq.test'
maxsel: no visible global function definition for 'complete.cases'
maxsel.asymp.test: no visible global function definition for
  'complete.cases'
Undefined global functions or variables:
  chisq.test complete.cases
Consider adding
  importFrom("stats", "chisq.test", "complete.cases")
to your NAMESPACE file.
Package in Depends field not imported from: 'grid'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sobir.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SocEpi.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
calculate.areas: no visible global function definition for 'runif'
calculate.gradedareas: no visible global function definition for
  'rnorm'
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sociome.Rcheck/00install.out' for details.
Running examples in 'socviz-Ex.R' failed
The error most likely occurred in:

> ### Name: freq_tab
> ### Title: Generate a tidy n-way frequency table
> ### Aliases: freq_tab
> 
> ### ** Examples
> 
> mtcars %>% freq_tab(vs, gear, carb)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: %>% ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
File
  LICENSE
is not mentioned in the DESCRIPTION file.
Warning: no function found corresponding to methods exports from 'SoDA' for: 'show'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Warning: no function found corresponding to methods exports from 'SoDA' for: 'show'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Missing or unexported object: 'base::WHAT'
Call with DUP:
   .Fortran("GEODISTV", as.double(lat1), as.double(lon1), as.double(lat2), 
       as.double(lon2), dist = double(nok), as.integer(nok), DUP = DUP, 
       PACKAGE = "SoDA")
DUP is no longer supported and will be ignored.
Malformed Description field: should contain one or more complete sentences.
Ssimpute.als: no visible global function definition for 'rnorm'
Ssvd.als: no visible global function definition for 'rnorm'
cs.default: no visible binding for global variable 'weighted.mean'
simpute.als: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  rnorm weighted.mean
Consider adding
  importFrom("stats", "rnorm", "weighted.mean")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/soilassessment.Rcheck/00install.out' for details.
compileDatabase: no visible global function definition for 'use_data'
Undefined global functions or variables:
  use_data
Found the following significant warnings:
  Warning: namespace 'caret' is not available and has been replaced
See 'd:/Rcompile/CRANpkg/local/4.0/Sojourn.Data.Rcheck/00install.out' for details.
installed size is 11.7Mb
  sub-directories of 1Mb or more:
    data  11.7Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Sojourn.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'tcltk' which was already attached by Depends.
  Please remove these calls from your code.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/solrium.Rcheck/00install.out' for details.
Package vignette with placeholder title 'Vignette Title':
  'SolveRationalMatrixEquation.Rmd'
soma: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
bm: no visible global function definition for 'rnorm'
bm: no visible global function definition for 'ts'
fbm: no visible global function definition for 'fft'
fbm: no visible global function definition for 'rnorm'
fbm: no visible global function definition for 'ts'
gbm: no visible global function definition for 'rnorm'
gbm: no visible global function definition for 'ts'
Undefined global functions or variables:
  fft rnorm ts
Consider adding
  importFrom("stats", "fft", "rnorm", "ts")
to your NAMESPACE file.
getAlpha: no visible global function definition for 'pbinom'
kfweOrd: no visible global function definition for 'qnbinom'
Undefined global functions or variables:
  pbinom qnbinom
Consider adding
  importFrom("stats", "pbinom", "qnbinom")
to your NAMESPACE file.
Warning: no function found corresponding to methods exports from 'someMTP' for: 'show'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    data   1.4Mb
    doc    2.2Mb
    libs   2.8Mb
'library' or 'require' call to 'hexbin' which was already attached by Depends.
  Please remove these calls from your code.
hexbinpie: no visible global function definition for 'quantile'
hexbinpie: no visible global function definition for 'polygon'
hexbinpie: no visible global function definition for 'text'
makehexbinplot: no visible global function definition for 'rainbow'
makehexbinplot: no visible global function definition for 'col2rgb'
makehexbinplot: no visible global function definition for 'edit'
makehexbinplot: no visible global function definition for 'dev.new'
makehexbinplot: no visible global function definition for 'plot.new'
makehexbinplot: no visible global function definition for 'plot.window'
makehexbinplot: no visible global function definition for 'box'
makehexbinplot: no visible global function definition for 'axis'
makehexbinplot: no visible global function definition for 'legend'
som.plot: no visible global function definition for 'read.table'
Undefined global functions or variables:
  axis box col2rgb dev.new edit legend plot.new plot.window polygon
  quantile rainbow read.table text
Consider adding
  importFrom("grDevices", "col2rgb", "dev.new", "rainbow")
  importFrom("graphics", "axis", "box", "legend", "plot.new",
             "plot.window", "polygon", "text")
  importFrom("stats", "quantile")
  importFrom("utils", "edit", "read.table")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'SongEvo.Rmd' using rmarkdown
Loading required package: lattice
Loading required package: survival
Loading required package: Formula
Loading required package: ggplot2

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, units

! Package pdftex.def Error: File `d:/RCompile/CRANpkg/local/4.0/SongEvo.Rcheck/
vign_test/SongEvo/vignettes/SongEvo_files/figure-latex/Examine\%20population\%2
0size\%20over\%20time-1.pdf' not found.

Error: processing vignette 'SongEvo.Rmd' failed with diagnostics:
LaTeX failed to compile d:/RCompile/CRANpkg/local/4.0/SongEvo.Rcheck/vign_test/SongEvo/vignettes/SongEvo.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See SongEvo.log for more info.
--- failed re-building 'SongEvo.Rmd'

SUMMARY: processing the following file failed:
  'SongEvo.Rmd'

Error: Vignette re-building failed.
Execution halted
Found the following hidden files and directories:
  .gitignore
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
Malformed Title field: should not end in a period.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sorvi.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'SciencesPo'
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    doc   4.4Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SoupX.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'r2cytoscape'
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    data   5.2Mb
exploreSP23Design: no visible global function definition for
  'txtProgressBar'
exploreSP23Design: no visible global function definition for
  'setTxtProgressBar'
generateClinicalTrialData : <anonymous>: no visible global function
  definition for 'runif'
generateClinicalTrialData: no visible global function definition for
  'rbinom'
generateClinicalTrialData: no visible global function definition for
  'rexp'
mHP.b : crossingProbDiff: no visible global function definition for
  'pnorm'
mHP.b : crossingProbDiff: no visible global function definition for
  'Miwa'
mHP.b: no visible global function definition for 'qnorm'
mHP.b: no visible global function definition for 'uniroot'
mHP.c : crossingProbDiff: no visible global function definition for
  'Miwa'
mHP.c: no visible global function definition for 'uniroot'
mHP.c: no visible global function definition for 'qnorm'
performInterimLook: no visible global function definition for 'optim'
performInterimLook: no visible global function definition for
  'constrOptim'
performInterimLook: no visible global function definition for 'qnorm'
Undefined global functions or variables:
  Miwa constrOptim optim pnorm qnorm rbinom rexp runif
  setTxtProgressBar txtProgressBar uniroot
Consider adding
  importFrom("stats", "constrOptim", "optim", "pnorm", "qnorm", "rbinom",
             "rexp", "runif", "uniroot")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SpaCCr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SpaDES.addins.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SpaDES.Rcheck/00install.out' for details.
Missing or unexported object: 'pomp::gillespie.hl.sim'
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    R      1.7Mb
    libs   2.9Mb
hausman: no visible global function definition for 'pchisq'
span.formula: no visible global function definition for 'model.frame'
span.formula: no visible global function definition for 'model.matrix'
span.formula: no visible global function definition for
  'model.response'
spbe: no visible global function definition for 'cor'
spbe: no visible global function definition for 'pt'
spfe: no visible global function definition for 'cor'
spfe: no visible global function definition for 'pt'
sprandom: no visible global function definition for 'cor'
sprandom: no visible global function definition for 'pt'
summary.span: no visible global function definition for 'printCoefmat'
Undefined global functions or variables:
  cor model.frame model.matrix model.response pchisq printCoefmat pt
Consider adding
  importFrom("stats", "cor", "model.frame", "model.matrix",
             "model.response", "pchisq", "printCoefmat", "pt")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sparkavro.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sparkbq.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sparkhail.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sparklyr.nested.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sparklyr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/spark.sas7bdat.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sparktf.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sparkwarc.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sparkxgb.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'RCurl' 'XML'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
SPARQL : <anonymous>: no visible global function definition for
  'URLencode'
SPARQL: no visible binding for global variable 'getURL'
SPARQL: no visible global function definition for 'URLencode'
SPARQL: no visible binding for global variable 'xmlParse'
SPARQL: no visible global function definition for 'getNodeSet'
SPARQL: no visible global function definition for 'xpathApply'
SPARQL: no visible binding for global variable 'postForm'
get_attr: no visible global function definition for 'getNodeSet'
get_attr : <anonymous> : <anonymous>: no visible global function
  definition for 'getNodeSet'
get_attr : <anonymous> : <anonymous>: no visible global function
  definition for 'xmlDoc'
get_value: no visible global function definition for 'xmlDoc'
get_value: no visible global function definition for 'xpathSApply'
get_value: no visible binding for global variable 'xmlValue'
get_value: no visible global function definition for 'xpathApply'
get_value: no visible binding for global variable 'xmlGetAttr'
readCSVstring: no visible global function definition for 'read.csv'
readTSVstring: no visible global function definition for 'read.delim'
Undefined global functions or variables:
  URLencode getNodeSet getURL postForm read.csv read.delim xmlDoc
  xmlGetAttr xmlParse xmlValue xpathApply xpathSApply
Consider adding
  importFrom("utils", "URLencode", "read.csv", "read.delim")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
f.I2.cont: no visible global function definition for 'combn'
f.I2.dich: no visible global function definition for 'combn'
f.pstar.cont: no visible global function definition for 'combn'
f.pstar.dich: no visible global function definition for 'combn'
Undefined global functions or variables:
  combn
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
Error(s) in re-building vignettes:
--- re-building 'sparseHessianFD.Rnw' using knitr
Quitting from lines 1270-1273 (sparseHessianFD.Rnw) 
Error: processing vignette 'sparseHessianFD.Rnw' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'sparseHessianFD.Rnw'

SUMMARY: processing the following file failed:
  'sparseHessianFD.Rnw'

Error: Vignette re-building failed.
Execution halted
Found the following sources/headers with CR or CRLF line endings:
  inst/include/MatrixAddons.h
  inst/include/sparseLTSEigen.h
Some Unix compilers require LF line endings.
Error(s) in re-building vignettes:
--- re-building 'sparseMVN.Rnw' using knitr
Quitting from lines 73-87 (sparseMVN.Rnw) 
Error: processing vignette 'sparseMVN.Rnw' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'sparseMVN.Rnw'

SUMMARY: processing the following file failed:
  'sparseMVN.Rnw'

Error: Vignette re-building failed.
Execution halted
Malformed Description field: should contain one or more complete sentences.
installed size is 20.2Mb
  sub-directories of 1Mb or more:
    libs  19.5Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SpatialBall.Rcheck/00install.out' for details.
Checking should be performed on sources prepared by 'R CMD build'.
Found the following sources/headers not terminated with a newline:
  src/calc.c
Some compilers warn on such files.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SpatialKDE.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/spatialrisk.Rcheck/00install.out' for details.
installed size is  8.3Mb
  sub-directories of 1Mb or more:
    doc    1.2Mb
    libs   6.8Mb
Found the following sources/headers not terminated with a newline:
  inst/include/STCXEM.h
  inst/include/STCXEMnonspatial.h
  inst/include/STCXEMspatial.h
  inst/include/STCdata.h
  inst/include/STCmodel.h
  inst/include/STCparam.h
  inst/include/STCtune.h
Some compilers warn on such files.
GNU make is a SystemRequirements.
installed size is 18.9Mb
  sub-directories of 1Mb or more:
    R      5.3Mb
    doc    6.0Mb
    help   5.3Mb
    libs   1.3Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/spbabel.Rcheck/00install.out' for details.
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    libs   5.0Mb
installed size is  9.4Mb
  sub-directories of 1Mb or more:
    data   5.6Mb
    libs   3.3Mb
GenerateCliquesCovariance: no visible global function definition for
  'rnorm'
Undefined global functions or variables:
  rnorm
Consider adding
  importFrom("stats", "rnorm")
to your NAMESPACE file.
Package suggested but not available for checking: 'spDataLarge'
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    data     2.6Mb
    shapes   3.2Mb
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    R     1.2Mb
    doc   5.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/spdplyr.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
bartlett: no visible global function definition for 'pchisq'
local.rbfdot: no visible binding for global variable 'sd'
local.rbfdot: no visible global function definition for 'dist'
local.rbfdot : <anonymous>: no visible global function definition for
  'median'
speccalt: no visible global function definition for 'kmeans'
Undefined global functions or variables:
  dist kmeans median pchisq sd
Consider adding
  importFrom("stats", "dist", "kmeans", "median", "pchisq", "sd")
to your NAMESPACE file.
ChaoBunge: no visible global function definition for 'qnorm'
ChaoLee1992: no visible global function definition for 'qnorm'
Pmix: no visible global function definition for 'dpois'
PmixSCon: no visible global function definition for 'dbeta'
bootPCG: no visible global function definition for 'flush.console'
bootPCG: no visible global function definition for 'quantile'
bootPnpmle: no visible global function definition for 'flush.console'
bootPnpmle: no visible global function definition for 'quantile'
bootUnpmle: no visible global function definition for 'flush.console'
bootUnpmle: no visible global function definition for 'quantile'
chao1984: no visible global function definition for 'qnorm'
jackknife: no visible global function definition for 'dbinom'
jackknife: no visible global function definition for 'qnorm'
pcg: no visible global function definition for 'flush.console'
unpmle: no visible global function definition for 'flush.console'
untrunPmix: no visible global function definition for 'dpois'
Undefined global functions or variables:
  dbeta dbinom dpois flush.console qnorm quantile
Consider adding
  importFrom("stats", "dbeta", "dbinom", "dpois", "qnorm", "quantile")
  importFrom("utils", "flush.console")
to your NAMESPACE file.
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    libs   3.7Mb
Package suggested but not available for checking: 'rcytoscapejs'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/specmine.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/specr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/spectralAnalysis.Rcheck/00install.out' for details.
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc    3.1Mb
    libs   2.1Mb
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(spectralGraphTopology)
  > 
  > test_check("spectralGraphTopology")
  -- 1. Error: (unknown) (@test-learnGraphTopology.R#19)  ------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. patrick::with_parameters_test_that(...)
   2. patrick::cases(...)
   3. dplyr::bind_rows
   4. base::getExportedValue(pkg, name)
   5. base::asNamespace(ns)
   6. base::getNamespace(ns)
   7. base::loadNamespace(name)
   8. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: (unknown) (@test-operators.R#87)  ---------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. patrick::with_parameters_test_that(...)
   2. patrick::cases(...)
   3. dplyr::bind_rows
   4. base::getExportedValue(pkg, name)
   5. base::asNamespace(ns)
   6. base::getNamespace(ns)
   7. base::loadNamespace(name)
   8. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 20 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: (unknown) (@test-learnGraphTopology.R#19) 
  2. Error: (unknown) (@test-operators.R#87) 
  
  Error: testthat unit tests failed
  Execution halted
Running examples in 'speech-Ex.R' failed
The error most likely occurred in:

> ### Name: speech_word_count
> ### Title: Number of words
> ### Aliases: speech_word_count
> 
> ### ** Examples
> 
> vec <- "Hello world!"
> speech_word_count(vec)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: speech_word_count ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
'library' or 'require' call to 'leaps' which was already attached by Depends.
  Please remove these calls from your code.
modSearch: no visible global function definition for 'glm'
modSearch: no visible binding for global variable 'binomial'
modSearch: no visible global function definition for 'na.omit'
modSearch: no visible global function definition for 'as.formula'
speff: no visible binding for global variable 'na.pass'
speff: no visible global function definition for 'model.matrix'
speff: no visible global function definition for 'terms'
speff: no visible global function definition for 'model.response'
speff: no visible global function definition for 'as.formula'
speff: no visible global function definition for 'predict'
speff: no visible global function definition for 'na.omit'
speff: no visible global function definition for 'glm'
speff: no visible binding for global variable 'na.omit'
speffSurv: no visible global function definition for 'model.matrix'
speffSurv: no visible global function definition for 'terms'
speffSurv: no visible global function definition for 'model.response'
speffSurv: no visible global function definition for 'as.formula'
speffSurv: no visible global function definition for 'uniroot'
summary.speff: no visible global function definition for 'qnorm'
summary.speff: no visible global function definition for 'pnorm'
summary.speffSurv: no visible global function definition for 'qnorm'
summary.speffSurv: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  as.formula binomial glm model.matrix model.response na.omit na.pass
  pnorm predict qnorm terms uniroot
Consider adding
  importFrom("stats", "as.formula", "binomial", "glm", "model.matrix",
             "model.response", "na.omit", "na.pass", "pnorm", "predict",
             "qnorm", "terms", "uniroot")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/spellcheckr.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
spe: warning in matrix(retlist[[10]], nr = nobs, nc = edim): partial
  argument match of 'nr' to 'nrow'
spe: warning in matrix(retlist[[10]], nr = nobs, nc = edim): partial
  argument match of 'nc' to 'ncol'
spe: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/spFSR.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'rgl'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
pointsphere: no visible global function definition for 'runif'
rgl.sphMW: no visible global function definition for 'plot3d'
rgl.sphcirc: no visible global function definition for 'rotate3d'
rgl.sphcirc: no visible global function definition for 'lines3d'
rgl.sphgrid: no visible global function definition for 'open3d'
rgl.sphgrid: no visible global function definition for 'plot3d'
rgl.sphgrid: no visible global function definition for 'lines3d'
rgl.sphgrid: no visible global function definition for 'text3d'
rgl.sphpoints: no visible global function definition for 'points3d'
rgl.sphsun: no visible global function definition for 'plot3d'
rgl.sphtext: no visible global function definition for 'text3d'
Undefined global functions or variables:
  lines3d open3d plot3d points3d rotate3d runif text3d
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/spider.Rcheck/00install.out' for details.
Package vignette with placeholder title 'Vignette Title':
  'spiders.Rmd'
Packages in Depends field not imported from:
  'lars' 'parallel' 'randomForest'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/spind.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'spinifex.Rmd' using rmarkdown

Attaching package: 'tourr'

The following object is masked from 'package:spinifex':

    is_orthonormal

Quitting from lines 61-65 (spinifex.Rmd) 
Error: processing vignette 'spinifex.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'spinifex.Rmd'

SUMMARY: processing the following file failed:
  'spinifex.Rmd'

Error: Vignette re-building failed.
Execution halted
'library' or 'require' call to 'quadprog' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'quadprog'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
SPIn: no visible global function definition for 'density'
SPIn: no visible global function definition for 'quantile'
SPIn: no visible global function definition for 'solve.QP'
bootSPIn: no visible global function definition for 'runif'
plot.SPIn: no visible global function definition for 'hist'
plot.SPIn: no visible global function definition for 'lines'
plot.SPIn: no visible global function definition for 'text'
plot.SPIn: no visible global function definition for 'quantile'
plot.SPIn: no visible global function definition for 'legend'
Undefined global functions or variables:
  density hist legend lines quantile runif solve.QP text
Consider adding
  importFrom("graphics", "hist", "legend", "lines", "text")
  importFrom("stats", "density", "quantile", "runif")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
spi: no visible global function definition for 'read.table'
spi: no visible global function definition for 'ecdf'
spi: no visible global function definition for 'qnorm'
spi: no visible global function definition for 'colorRampPalette'
spi: no visible global function definition for 'filled.contour'
spi: no visible global function definition for 'axis'
Undefined global functions or variables:
  axis colorRampPalette ecdf filled.contour qnorm read.table
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("graphics", "axis", "filled.contour")
  importFrom("stats", "ecdf", "qnorm")
  importFrom("utils", "read.table")
to your NAMESPACE file.
prepare_Rd: spi.Rd:117-119: Dropping empty section \note
prepare_Rd: spi.Rd:123-125: Dropping empty section \seealso
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/spiR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/splashr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/splinetree.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/splithalf.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/splithalfr.Rcheck/00install.out' for details.
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   3.0Mb
    libs   2.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/spocc.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
R2.global: no visible global function definition for 'var'
calculer.var.exp: no visible global function definition for 'var'
creer.noeud: no visible global function definition for 'var'
ponderer.classe: no visible global function definition for 'var'
ponderer.classe: no visible global function definition for 'cov'
spodt: no visible global function definition for 'model.frame'
spodt.tree: no visible global function definition for 'plot.new'
spodt.tree: no visible global function definition for 'par'
spodt.tree: no visible global function definition for 'plot.window'
spodt.tree: no visible global function definition for 'text'
spodt.tree: no visible global function definition for 'segments'
test.spodt: no visible global function definition for 'model.frame'
test.spodt: no visible global function definition for 'hist'
test.spodt: no visible global function definition for 'abline'
tracer.noeud: no visible global function definition for 'text'
tracer.noeud: no visible global function definition for 'segments'
Undefined global functions or variables:
  abline cov hist model.frame par plot.new plot.window segments text
  var
Consider adding
  importFrom("graphics", "abline", "hist", "par", "plot.new",
             "plot.window", "segments", "text")
  importFrom("stats", "cov", "model.frame", "var")
to your NAMESPACE file.
Running 'testthat.R' [5s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(spork)
  > 
  > test_check("spork")
  -- 1. Error: all valid spork print as axis label (@test-spork.R#3)  ------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  -- 2. Error: R reserved words survive in print.dg labels (@test-spork.R#36)  ---
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 94 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: all valid spork print as axis label (@test-spork.R#3) 
  2. Error: R reserved words survive in print.dg labels (@test-spork.R#36) 
  
  Error: testthat unit tests failed
  Execution halted
Ell.Theta: no visible global function definition for 'ell.theta'
confid.int.theta: no visible global function definition for 'qchisq'
confid.int.theta : sim.c: no visible global function definition for
  'runif'
confid.int.theta: no visible global function definition for 'quantile'
dd.est: no visible global function definition for 'ecdf'
ks.sporm : Simul: no visible global function definition for 'runif'
ks.stat: no visible global function definition for 'ecdf'
plotor: no visible global function definition for 'ecdf'
test.theta: no visible global function definition for 'ecdf'
test.theta : sim: no visible global function definition for 'runif'
Undefined global functions or variables:
  ecdf ell.theta qchisq quantile runif
Consider adding
  importFrom("stats", "ecdf", "qchisq", "quantile", "runif")
to your NAMESPACE file.
prepare_Rd: H.Binv.Rd:48-50: Dropping empty section \note
prepare_Rd: V.theta.Rd:28-30: Dropping empty section \details
prepare_Rd: V.theta.Rd:43-45: Dropping empty section \note
prepare_Rd: V.theta.Rd:49-51: Dropping empty section \seealso
prepare_Rd: V.theta.Rd:52-53: Dropping empty section \examples
prepare_Rd: confid.int.theta.Rd:62-64: Dropping empty section \note
prepare_Rd: dd.est.Rd:39-41: Dropping empty section \note
prepare_Rd: dd.est.Rd:45-47: Dropping empty section \seealso
prepare_Rd: ell.theta.Rd:60-62: Dropping empty section \note
prepare_Rd: ell.theta.Rd:69-70: Dropping empty section \examples
prepare_Rd: grad.hessinv.Rd:47-49: Dropping empty section \note
prepare_Rd: ks.sporm.Rd:43-45: Dropping empty section \note
prepare_Rd: ks.stat.Rd:39-41: Dropping empty section \note
prepare_Rd: mrle.sporm.Rd:66-68: Dropping empty section \note
prepare_Rd: mrle.sporm.Rd:72-74: Dropping empty section \seealso
prepare_Rd: newton.theta.Rd:47-49: Dropping empty section \note
prepare_Rd: phi.Rd:32-38: Dropping empty section \value
prepare_Rd: phi.Rd:48-50: Dropping empty section \note
prepare_Rd: plotor.Rd:26-32: Dropping empty section \value
prepare_Rd: plotor.Rd:42-44: Dropping empty section \note
prepare_Rd: plotor.Rd:48-50: Dropping empty section \seealso
prepare_Rd: sporm-package.Rd:53-54: Dropping empty section \seealso
prepare_Rd: sporm-package.Rd:55-56: Dropping empty section \examples
prepare_Rd: test.theta.Rd:54-56: Dropping empty section \note
Running 'spelling.R' [0s]
  Running 'testthat.R' [26s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > 
  > test_check("sport")
  Loading required package: sport
  -- 1. Error: Reasonable estimates (@test_rating.R#492)  ------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 237 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: Reasonable estimates (@test_rating.R#492) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'sport_in_r.Rmd' using rmarkdown
Quitting from lines 238-245 (sport_in_r.Rmd) 
Error: processing vignette 'sport_in_r.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'sport_in_r.Rmd'

--- re-building 'the_theory.Rmd' using rmarkdown
--- finished re-building 'the_theory.Rmd'

SUMMARY: processing the following file failed:
  'sport_in_r.Rmd'

Error: Vignette re-building failed.
Execution halted
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
fetch_NBAPlayerStatistics: no visible global function definition for
  'read.table'
Undefined global functions or variables:
  read.table
Consider adding
  importFrom("utils", "read.table")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/spotGUI.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SPOT.Rcheck/00install.out' for details.
installed size is  9.3Mb
  sub-directories of 1Mb or more:
    data   5.4Mb
    libs   3.1Mb
Found the following sources/headers with CR or CRLF line endings:
  inst/include/sppmix.h
Some Unix compilers require LF line endings.
Package vignette with placeholder title 'Vignette Title':
  'spreadr_vignette.Rmd'
plot.SPRT: no visible global function definition for 'par'
plot.SPRT: no visible global function definition for 'abline'
print.SPRT: no visible global function definition for 'head'
Undefined global functions or variables:
  abline head par
Consider adding
  importFrom("graphics", "abline", "par")
  importFrom("utils", "head")
to your NAMESPACE file.
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    doc    1.5Mb
    libs   5.9Mb
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SQB.Rcheck/00install.out' for details.
sGda : <anonymous>: no visible global function definition for 'cov'
sortgene: no visible global function definition for 'model.matrix'
Undefined global functions or variables:
  cov model.matrix
Consider adding
  importFrom("stats", "cov", "model.matrix")
to your NAMESPACE file.
Running examples in 'sqlscore-Ex.R' failed
The error most likely occurred in:

> ### Name: create_statement
> ### Title: Generate a CREATE TABLE statement from a model
> ### Aliases: create_statement
> 
> ### ** Examples
> 
> # Basic create statements
> mod <- glm(Sepal.Length ~ Sepal.Width + Petal.Length + Petal.Width + Species,
+            data=datasets::iris)
> create_statement(mod, src_table="tbl_name", dest_table="target_tbl")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: create_statement ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Malformed Title field: should not end in a period.
'library' or 'require' calls in package code:
  'RJDBC' 'RMySQL' 'RODBC' 'RPostgreSQL' 'RSQLite' 'tcltk'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
cacheQuery: no visible global function definition for 'read.csv'
cacheQuery: no visible global function definition for 'write.csv'
Undefined global functions or variables:
  read.csv write.csv
Consider adding
  importFrom("utils", "read.csv", "write.csv")
to your NAMESPACE file.
SQN: no visible binding for global variable 'median'
SQN: no visible global function definition for 'quantile'
SQN.demo.data: no visible global function definition for 'rnorm'
mix.qn: no visible global function definition for 'ecdf'
mix.qn: no visible global function definition for 'quantile'
Undefined global functions or variables:
  ecdf median quantile rnorm
Consider adding
  importFrom("stats", "ecdf", "median", "quantile", "rnorm")
to your NAMESPACE file.
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/squashinformr.Rcheck/00install.out' for details.
Found the following hidden files and directories:
  .Rapp.history
  inst/script/.Rapp.history
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
File
  LICENSE
is not mentioned in the DESCRIPTION file.
File 'sROC/R/onload.R':
  .onLoad calls:
    packageStartupMessage("sROC 0.1-2 loaded")

See section 'Good practice' in '?.onAttach'.

AUC : TrapezInt: no visible global function definition for 'approx'
AUC : SimpsonInt: no visible global function definition for 'approx'
CI.CDF: no visible global function definition for 'qnorm'
bw.CDF: no visible global function definition for 'sd'
bw.CDF: no visible global function definition for 'IQR'
bw.CDF.pi: no visible global function definition for 'sd'
bw.CDF.pi: no visible global function definition for 'bw.nrd0'
bw.CDF.pi: no visible global function definition for 'bw.nrd'
bw.CDF.pi: no visible global function definition for 'bw.ucv'
bw.CDF.pi: no visible global function definition for 'bw.bcv'
bw.CDF.pi: no visible global function definition for 'bw.SJ'
bw.CDF.pi: no visible global function definition for 'IQR'
plot.CDF: no visible global function definition for 'plot.default'
plot.CDF: no visible global function definition for 'lines'
plot.CDF: no visible global function definition for 'polygon'
plot.ROC: no visible global function definition for 'plot.default'
plot.ROC: no visible global function definition for 'abline'
Undefined global functions or variables:
  IQR abline approx bw.SJ bw.bcv bw.nrd bw.nrd0 bw.ucv lines
  plot.default polygon qnorm sd
Consider adding
  importFrom("graphics", "abline", "lines", "plot.default", "polygon")
  importFrom("stats", "IQR", "approx", "bw.SJ", "bw.bcv", "bw.nrd",
             "bw.nrd0", "bw.ucv", "qnorm", "sd")
to your NAMESPACE file.
Package in Depends field not imported from: 'tcltk'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/srvyr.Rcheck/00install.out' for details.
Running examples in 'ssc-Ex.R' failed
The error most likely occurred in:

> ### Name: coBC
> ### Title: CoBC method
> ### Aliases: coBC
> 
> ### ** Examples
> 
> 
> library(ssc)
> 
> ## Load Wine data set
> data(wine)
> 
> cls <- which(colnames(wine) == "Wine")
> x <- wine[, -cls] # instances without classes
> y <- wine[, cls] # the classes
> x <- scale(x) # scale the attributes
> 
> ## Prepare data
> set.seed(20)
> # Use 50% of instances for training
> tra.idx <- sample(x = length(y), size = ceiling(length(y) * 0.5))
> xtrain <- x[tra.idx,] # training instances
> ytrain <- y[tra.idx]  # classes of training instances
> # Use 70% of train instances as unlabeled set
> tra.na.idx <- sample(x = length(tra.idx), size = ceiling(length(tra.idx) * 0.7))
> ytrain[tra.na.idx] <- NA # remove class information of unlabeled instances
> 
> # Use the other 50% of instances for inductive testing
> tst.idx <- setdiff(1:length(y), tra.idx)
> xitest <- x[tst.idx,] # testing instances
> yitest <- y[tst.idx] # classes of testing instances
> 
> ## Example: Training from a set of instances with 1-NN as base classifier.
> set.seed(1)
> m1 <- coBC(x = xtrain, y = ytrain, 
+            learner = caret::knn3, 
+            learner.pars = list(k = 1),
+            pred = "predict")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: coBC ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SSDforR.Rcheck/00install.out' for details.
ssd : correction_method_D: no visible global function definition for
  'rnorm'
ssd : generate_bootstrap: no visible global function definition for
  'rmultinom'
ssd : bootstrap_method: no visible global function definition for
  'median'
ssd : bootstrap_method: no visible global function definition for
  'quantile'
ssd : unbalanced_generate_bootstrap: no visible global function
  definition for 'rmultinom'
ssd : unbalanced_bootstrap_method: no visible global function
  definition for 'median'
ssd : unbalanced_bootstrap_method: no visible global function
  definition for 'quantile'
ssd: no visible global function definition for 'qchisq'
Undefined global functions or variables:
  median qchisq quantile rmultinom rnorm
Consider adding
  importFrom("stats", "median", "qchisq", "quantile", "rmultinom",
             "rnorm")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'distributions.Rmd' using rmarkdown

Attaching package: 'ssdtools'

The following objects are masked from 'package:stats':

    dgamma, dlnorm, dweibull, pgamma, plnorm, pweibull, qgamma, qlnorm,
    qweibull, rgamma, rlnorm, rweibull

--- finished re-building 'distributions.Rmd'

--- re-building 'exposure-plots.Rmd' using rmarkdown

Attaching package: 'ssdtools'

The following objects are masked from 'package:stats':

    dgamma, dlnorm, dweibull, pgamma, plnorm, pweibull, qgamma, qlnorm,
    qweibull, rgamma, rlnorm, rweibull

--- finished re-building 'exposure-plots.Rmd'

--- re-building 'faqs.Rmd' using rmarkdown

Attaching package: 'ssdtools'

The following objects are masked from 'package:stats':

    dgamma, dlnorm, dweibull, pgamma, plnorm, pweibull, qgamma, qlnorm,
    qweibull, rgamma, rlnorm, rweibull

Quitting from lines 39-49 (faqs.Rmd) 
Error: processing vignette 'faqs.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'faqs.Rmd'

--- re-building 'small-sample-bias-ref.Rmd' using rmarkdown
--- finished re-building 'small-sample-bias-ref.Rmd'

--- re-building 'ssdtools.Rmd' using rmarkdown

Attaching package: 'ssdtools'

The following objects are masked from 'package:stats':

    dgamma, dlnorm, dweibull, pgamma, plnorm, pweibull, qgamma, qlnorm,
    qweibull, rgamma, rlnorm, rweibull

--- finished re-building 'ssdtools.Rmd'

--- re-building 'small-sample-bias.pdf.asis' using asis
--- finished re-building 'small-sample-bias.pdf.asis'

SUMMARY: processing the following file failed:
  'faqs.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'ssev-Ex.R' failed
The error most likely occurred in:

> ### Name: compute_sample_size
> ### Title: Compute sample size
> ### Aliases: compute_sample_size
> 
> ### ** Examples
> 
> compute_sample_size(means=c(0,1), sds=2, N=100)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: compute_sample_size ... loadNamespace -> namespaceImport -> loadNamespace -> library.dynam
Execution halted
L_hNV: no visible global function definition for 'pnorm'
L_hNV_rho: no visible global function definition for 'pnorm'
eff.ssfa: no visible global function definition for 'pnorm'
plot_fitted: no visible global function definition for 'lines'
plot_moran: no visible global function definition for 'residuals'
print.summary.ssfa: no visible global function definition for
  'printCoefmat'
ssfa: no visible global function definition for 'model.frame'
ssfa: no visible global function definition for 'model.response'
ssfa.fit: no visible global function definition for 'lm'
ssfa.fit: no visible global function definition for 'var'
ssfa.fit: no visible global function definition for 'logLik'
summary.ssfa: no visible global function definition for 'pnorm'
summary.ssfa: no visible global function definition for 'logLik'
summary.ssfa: no visible global function definition for 'pchisq'
summary.ssfa: no visible binding for global variable 'df'
u.ssfa: no visible global function definition for 'dnorm'
u.ssfa: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  df dnorm lines lm logLik model.frame model.response pchisq pnorm
  printCoefmat residuals var
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "df", "dnorm", "lm", "logLik", "model.frame",
             "model.response", "pchisq", "pnorm", "printCoefmat",
             "residuals", "var")
to your NAMESPACE file.
Package in Depends field not imported from: 'survey'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
fit.model: no visible global function definition for 'hadamard'
Undefined global functions or variables:
  hadamard
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SSHAARP.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SSLR.Rcheck/00install.out' for details.
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    libs   8.3Mb
GNU make is a SystemRequirements.
Malformed Description field: should contain one or more complete sentences.
map.world: no visible global function definition for 'par'
map.world: no visible global function definition for 'plot.new'
map.world: no visible global function definition for 'plot.window'
map.world: no visible global function definition for 'lines'
map.world: no visible global function definition for 'title'
map.world: no visible global function definition for 'axis'
map.world: no visible global function definition for 'box'
plot.smooth.sspline: no visible global function definition for
  'predict'
plot.smooth.sspline: no visible global function definition for
  'filled.contour'
plot.smooth.sspline: no visible binding for global variable
  'terrain.colors'
plot.smooth.sspline: no visible global function definition for 'title'
plot.smooth.sspline: no visible global function definition for 'axis'
station: no visible binding for global variable 'WTdiff'
station: no visible global function definition for 'points'
Undefined global functions or variables:
  WTdiff axis box filled.contour lines par plot.new plot.window points
  predict terrain.colors title
Consider adding
  importFrom("grDevices", "terrain.colors")
  importFrom("graphics", "axis", "box", "filled.contour", "lines", "par",
             "plot.new", "plot.window", "points", "title")
  importFrom("stats", "predict")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sspse.Rcheck/00install.out' for details.
Running examples in 'ssrn-Ex.R' failed
The error most likely occurred in:

> ### Name: make_adjacency_matrix
> ### Title: Convert station data to adjacency matrix
> ### Aliases: make_adjacency_matrix
> 
> ### ** Examples
> 
> make_adjacency_matrix(jreast_jt, st_code, next_st_code)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: make_adjacency_matrix ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(ssrn)
  > 
  > test_check("ssrn")
  -- 1. Error: adjacent works (@test-matrix.R#2)  --------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. ssrn::make_adjacency_matrix(jreast_jt, depart = st_name, arrive = next_st_name)
    5. ssrn::transit_table(stations)
   11. dplyr::mutate(...)
   15. base::getExportedValue(pkg, name)
   16. base::asNamespace(ns)
   17. base::getNamespace(ns)
   18. base::loadNamespace(name)
   19. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: passenger works (@test-matrix.R#30)  ------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    9. ssrn::make_passenger_matrix(...)
    9. ssrn:::make_pass_volume(., transit_table(stations), by = by_1)
   11. dplyr::right_join(., st_data, by = ...)
   27. base::getExportedValue(pkg, name)
   28. base::asNamespace(ns)
   29. base::getNamespace(ns)
   30. base::loadNamespace(name)
   31. base::library.dynam(lib, package, package.lib)
  
  -- 3. Error: multiplication works (@test-od.R#2)  ------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. ssrn::make_passenger_od(...)
    2. ssrn:::sum_od_volume(...)
   10. dplyr::group_by(...)
   11. base::getExportedValue(pkg, name)
   12. base::asNamespace(ns)
   13. base::getNamespace(ns)
   14. base::loadNamespace(name)
   15. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
  1. Error: adjacent works (@test-matrix.R#2) 
  2. Error: passenger works (@test-matrix.R#30) 
  3. Error: multiplication works (@test-od.R#2) 
  
  Error: testthat unit tests failed
  Execution halted
Running examples in 'ssr-Ex.R' failed
The error most likely occurred in:

> ### Name: plot.ssr
> ### Title: Plots a ssr object
> ### Aliases: plot.ssr
> 
> ### ** Examples
> 
> dataset <- friedman1 # Load dataset.
> 
> set.seed(1234)
> 
> # Prepare the data.
> split1 <- split_train_test(dataset, pctTrain = 70)
> split2 <- split_train_test(split1$trainset, pctTrain = 5)
> L <- split2$trainset
> U <- split2$testset[, -11]
> testset <- split1$testset
> regressors <- list(knn = caret::knnreg)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: :: ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'ssr-package-vignette.Rmd' using rmarkdown
Quitting from lines 71-76 (ssr-package-vignette.Rmd) 
Error: processing vignette 'ssr-package-vignette.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'ssr-package-vignette.Rmd'

SUMMARY: processing the following file failed:
  'ssr-package-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Sstack.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
error.est : <anonymous>: no visible global function definition for
  'median'
holm.robust: no visible global function definition for 'pnorm'
holm.robust: no visible global function definition for 'median'
holm.robust: no visible global function definition for 'mad'
huberize: no visible global function definition for 'quantile'
ssvd.initial: no visible global function definition for 'mad'
ssvd.iter.thresh: no visible global function definition for 'mad'
Undefined global functions or variables:
  mad median pnorm quantile
Consider adding
  importFrom("stats", "mad", "median", "pnorm", "quantile")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/stability.Rcheck/00install.out' for details.
genericPlot: no visible global function definition for 'dev.new'
genericPlot: no visible global function definition for 'par'
genericPlot: no visible global function definition for 'rainbow'
genericPlot: no visible global function definition for 'lines'
genericPlot: no visible global function definition for 'legend'
genericPlot: no visible global function definition for 'dev.copy2pdf'
genericPlot: no visible global function definition for 'dev.copy2eps'
genericPlot: no visible global function definition for 'dev.print'
genericPlot: no visible binding for global variable 'png'
genericPlot: no visible binding for global variable 'tiff'
plotStrains: no visible global function definition for 'rainbow'
plotStrains: no visible global function definition for 'dev.new'
plotStrains: no visible global function definition for 'par'
plotStrains: no visible global function definition for 'lines'
plotStrains: no visible global function definition for 'legend'
plotStrains: no visible global function definition for 'dev.copy2pdf'
plotStrains: no visible global function definition for 'dev.copy2eps'
plotStrains: no visible global function definition for 'dev.print'
plotStrains: no visible binding for global variable 'png'
plotStrains: no visible binding for global variable 'tiff'
Undefined global functions or variables:
  dev.copy2eps dev.copy2pdf dev.new dev.print legend lines par png
  rainbow tiff
Consider adding
  importFrom("grDevices", "dev.copy2eps", "dev.copy2pdf", "dev.new",
             "dev.print", "png", "rainbow", "tiff")
  importFrom("graphics", "legend", "lines", "par")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/StAMPP.Rcheck/00install.out' for details.
File
  LICENCE
is not mentioned in the DESCRIPTION file.
'library' or 'require' calls to packages already attached by Depends:
  'np' 'sp'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'np' 'sp'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
stkde: no visible global function definition for 'npudensbw'
stkde: no visible global function definition for 'npudens'
stkde: no visible global function definition for 'quantile'
stkde: no visible global function definition for 'heat.colors'
stkde: no visible global function definition for 'par'
stkde: no visible global function definition for 'image'
stkde: no visible global function definition for 'contour'
stkde.base: no visible global function definition for 'npudensbw'
stkde.base: no visible global function definition for 'npudens'
stkde.sig: no visible global function definition for 'SpatialPoints'
stkde.sig: no visible global function definition for 'spsample'
stkde.sig: no visible global function definition for 'bbox'
stkde.sig: no visible global function definition for 'quantile'
stkde.sig: no visible global function definition for 'heat.colors'
stkde.sig: no visible global function definition for 'par'
stkde.sig: no visible global function definition for 'image'
stkde.sig: no visible global function definition for 'contour'
Undefined global functions or variables:
  SpatialPoints bbox contour heat.colors image npudens npudensbw par
  quantile spsample
Consider adding
  importFrom("grDevices", "heat.colors")
  importFrom("graphics", "contour", "image", "par")
  importFrom("stats", "quantile")
to your NAMESPACE file.
find.names: no visible global function definition for 'na.omit'
generate.names: no visible global function definition for 'na.omit'
standardize.countrynames: no visible global function definition for
  'data'
standardize.names: no visible global function definition for 'na.omit'
Undefined global functions or variables:
  data na.omit
Consider adding
  importFrom("stats", "na.omit")
  importFrom("utils", "data")
to your NAMESPACE file.
installed size is 11.0Mb
  sub-directories of 1Mb or more:
    include   9.8Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/staRdom.Rcheck/00install.out' for details.
'library' or 'require' call to 'codetools' which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'codetools' 'gss'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Running examples in 'starschemar-Ex.R' failed
The error most likely occurred in:

> ### Name: character_dimensions
> ### Title: Transform dimension numeric attributes to character
> ### Aliases: character_dimensions character_dimensions.star_schema
> 
> ### ** Examples
> 
> library(tidyr)
Error: package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Error(s) in re-building vignettes:
--- re-building 'starschemar.Rmd' using rmarkdown
Quitting from lines 217-261 (starschemar.Rmd) 
Error: processing vignette 'starschemar.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'starschemar.Rmd'

SUMMARY: processing the following file failed:
  'starschemar.Rmd'

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: 'starsdata'
installed size is  8.1Mb
  sub-directories of 1Mb or more:
    doc   1.9Mb
    nc    4.5Mb
Error(s) in re-building vignettes:
--- re-building 'stars1.Rmd' using rmarkdown
Quitting from lines 183-185 (stars1.Rmd) 
Error: processing vignette 'stars1.Rmd' failed with diagnostics:
package ncmeta required, please install it first
--- failed re-building 'stars1.Rmd'

--- re-building 'stars2.Rmd' using rmarkdown
--- finished re-building 'stars2.Rmd'

--- re-building 'stars3.Rmd' using rmarkdown
Quitting from lines 27-29 (stars3.Rmd) 
Error: processing vignette 'stars3.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'stars3.Rmd'

--- re-building 'stars4.Rmd' using rmarkdown
--- finished re-building 'stars4.Rmd'

--- re-building 'stars5.Rmd' using rmarkdown
--- finished re-building 'stars5.Rmd'

SUMMARY: processing the following files failed:
  'stars1.Rmd' 'stars3.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/statar.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/states.Rcheck/00install.out' for details.
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    data   3.0Mb
    libs   2.7Mb
Package suggested but not available for checking: 'asreml'
actvspred: no visible global function definition for 'quantile'
actvspred: no visible global function definition for 'aggregate'
actvspred: no visible global function definition for 'par'
actvspred: no visible global function definition for 'lines'
auc: no visible global function definition for 'par'
decile: no visible global function definition for 'quantile'
dqcontinuous : numoutliers: no visible global function definition for
  'quantile'
dqcontinuous : <anonymous>: no visible global function definition for
  'sd'
dqcontinuous : <anonymous>: no visible global function definition for
  'quantile'
gini: no visible global function definition for 'par'
gini: no visible global function definition for 'abline'
iv: no visible global function definition for 'quantile'
iv: no visible global function definition for 'aggregate'
ks: no visible global function definition for 'aggregate'
ks: no visible global function definition for 'par'
ks: no visible global function definition for 'lines'
outliers: no visible global function definition for 'quantile'
outliers: no visible global function definition for 'na.omit'
pentile: no visible global function definition for 'quantile'
Undefined global functions or variables:
  abline aggregate lines na.omit par quantile sd
Consider adding
  importFrom("graphics", "abline", "lines", "par")
  importFrom("stats", "aggregate", "na.omit", "quantile", "sd")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/statmod.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/statnet.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/statnetWeb.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/statnipokladna.Rcheck/00install.out' for details.
inspect: no visible global function definition for 'par'
inspect: no visible global function definition for 'abline'
inspect: no visible global function definition for 'lines'
inspect: no visible global function definition for 'points'
plotfit: no visible global function definition for 'dev.off'
plotfit: no visible global function definition for 'par'
plotfit: no visible global function definition for 'lines'
plotfit: no visible global function definition for 'points'
plotfit: no visible global function definition for 'legend'
plothill: no visible global function definition for 'par'
plothill: no visible global function definition for 'abline'
plothill: no visible global function definition for 'points'
plotmultifit: no visible global function definition for 'par'
plotmultifit: no visible global function definition for 'lines'
plotmultifit: no visible global function definition for 'points'
plotmultifit: no visible global function definition for 'pexp'
plotmultifit: no visible global function definition for 'plnorm'
plotmultifit: no visible global function definition for 'ppois'
plotmultifit: no visible global function definition for 'legend'
plotols: no visible global function definition for 'dev.off'
plotols: no visible global function definition for 'lm'
plotols: no visible global function definition for 'par'
plotols: no visible global function definition for 'abline'
plotols: no visible global function definition for 'legend'
Undefined global functions or variables:
  abline dev.off legend lines lm par pexp plnorm points ppois
Consider adding
  importFrom("grDevices", "dev.off")
  importFrom("graphics", "abline", "legend", "lines", "par", "points")
  importFrom("stats", "lm", "pexp", "plnorm", "ppois")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/statquotes.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/statsExpressions.Rcheck/00install.out' for details.
Running examples in 'statsr-Ex.R' failed
The error most likely occurred in:

> ### Name: plot_bandit_posterior
> ### Title: plot_bandit_posterior
> ### Aliases: plot_bandit_posterior
> 
> ### ** Examples
> 
> data = data.frame(machine = c(1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L), 
+                   outcome = c("W", "L", "W", "L", "L", "W", "L", "L", "L", "W"))
> plot_bandit_posterior(data)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: plot_bandit_posterior ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/statVisual.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/stcos.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/steemr.Rcheck/00install.out' for details.
getStp: no visible global function definition for 'lm'
plot.steeptest: no visible global function definition for 'axis'
plot.steeptest: no visible global function definition for 'box'
plot.steeptest: no visible global function definition for 'lm'
plot.steeptest: no visible global function definition for 'abline'
plot.steeptest: no visible global function definition for 'legend'
plot.steeptest: no visible global function definition for
  'as.graphicsAnnot'
steeptest: no visible global function definition for 'lm'
summary.steeptest: no visible global function definition for 'var'
summary.steeptest: no visible global function definition for 'quantile'
Undefined global functions or variables:
  abline as.graphicsAnnot axis box legend lm quantile var
Consider adding
  importFrom("grDevices", "as.graphicsAnnot")
  importFrom("graphics", "abline", "axis", "box", "legend")
  importFrom("stats", "lm", "quantile", "var")
to your NAMESPACE file.
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
Stem.Bootstrap: no visible global function definition for 'runif'
filtering: no visible global function definition for 'is.ts'
filtering: no visible global function definition for 'ts'
filtering: no visible global function definition for 'start'
filtering: no visible global function definition for 'end'
filtering: no visible global function definition for 'frequency'
kalman: no visible global function definition for 'ts'
smoothing: no visible global function definition for 'is.ts'
smoothing: no visible global function definition for 'ts'
smoothing: no visible global function definition for 'start'
smoothing: no visible global function definition for 'end'
smoothing: no visible global function definition for 'frequency'
Undefined global functions or variables:
  end frequency is.ts runif start ts
Consider adding
  importFrom("stats", "end", "frequency", "is.ts", "runif", "start",
             "ts")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/stlcsb.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/stminsights.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
Error(s) in re-building vignettes:
--- re-building 'stmVignette.Rnw' using Sweave
stm v1.3.5 successfully loaded. See ?stm for help. 
 Papers, resources, and other materials at structuraltopicmodel.com

Error: processing vignette 'stmVignette.Rnw' failed with diagnostics:
 chunk 7 
Error in load(url("http://goo.gl/VPdxlS")) : 
  error reading from connection

--- failed re-building 'stmVignette.Rnw'

SUMMARY: processing the following file failed:
  'stmVignette.Rnw'

Error: Vignette re-building failed.
Execution halted
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc    2.6Mb
    libs   2.5Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/stocks.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/stormwindmodel.Rcheck/00install.out' for details.
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    R          2.0Mb
    datasets   2.6Mb
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc    2.6Mb
    libs   2.1Mb
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    libs   2.9Mb
Package suggested but not available for checking: 'BSgenome.Ptroglodytes.UCSC.panTro5'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/strand.Rcheck/00install.out' for details.
StratPhyloCongruence: no visible global function definition for 'runif'
StratPhyloCongruence: no visible global function definition for
  'txtProgressBar'
StratPhyloCongruence: no visible global function definition for
  'setTxtProgressBar'
StratPhyloCongruence: no visible global function definition for 'pnorm'
StratPhyloCongruence: no visible global function definition for 'sd'
geoscalePhylo: no visible global function definition for 'data'
geoscalePhylo: no visible global function definition for 'par'
geoscalePhylo: no visible global function definition for 'text'
geoscalePhylo: no visible global function definition for 'segments'
geoscalePhylo: no visible global function definition for 'rect'
geoscalePhylo: no visible global function definition for 'rgb'
Undefined global functions or variables:
  data par pnorm rect rgb runif sd segments setTxtProgressBar text
  txtProgressBar
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "par", "rect", "segments", "text")
  importFrom("stats", "pnorm", "runif", "sd")
  importFrom("utils", "data", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Running examples in 'stratamatch-Ex.R' failed
The error most likely occurred in:

> ### Name: auto_stratify
> ### Title: Auto Stratify
> ### Aliases: auto_stratify
> 
> ### ** Examples
> 
>   # make sample data set
>   set.seed(111)
>   dat <- make_sample_data(n = 75)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: make_sample_data ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Intro_to_stratamatch.Rmd' using rmarkdown
Quitting from lines 63-71 (Intro_to_stratamatch.Rmd) 
Error: processing vignette 'Intro_to_stratamatch.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Intro_to_stratamatch.Rmd'

SUMMARY: processing the following file failed:
  'Intro_to_stratamatch.Rmd'

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: 'StrathE2E2examples'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/StratifiedMedicine.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/StratifiedRF.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/StratigrapheR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/STraTUS.Rcheck/00install.out' for details.
Missing or unexported object: 'limma::ebayes'
Running examples in 'streamDepletr-Ex.R' failed
The error most likely occurred in:

> ### Name: apportion_inverse
> ### Title: Distribute streamflow depletion within a stream network using
> ###   inverse distance weighting.
> ### Aliases: apportion_inverse
> 
> ### ** Examples
> 
> reach_dist <- data.frame(reach = seq(1,5), dist = c(100, 150, 900, 300, 200))
> apportion_inverse(reach_dist, w = 2)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: apportion_inverse ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'intro-to-streamDepletr.Rmd' using rmarkdown
Quitting from lines 91-101 (intro-to-streamDepletr.Rmd) 
Error: processing vignette 'intro-to-streamDepletr.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'intro-to-streamDepletr.Rmd'

SUMMARY: processing the following file failed:
  'intro-to-streamDepletr.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    doc    1.6Mb
    libs   3.2Mb
Malformed Title field: should not end in a period.
GNU make is a SystemRequirements.
installed size is 35.6Mb
  sub-directories of 1Mb or more:
    libs  34.8Mb
Package suggested but not available for checking: 'STRaitRazoR'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/STRMPS.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'doMC'
efpFunctional: multiple local function definitions for 'plotProcess'
  with different formal arguments
mefp.efp: multiple local function definitions for 'computeEmpProc' with
  different formal arguments
Warning: no function found corresponding to methods exports from 'stsm.class' for: 'show'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
stsm.model: no visible global function definition for 'is.ts'
stsm.model: no visible global function definition for 'var'
stsm.model: no visible global function definition for 'frequency'
stsm.model: no visible global function definition for 'na.omit'
stsm.model: no visible global function definition for 'fft'
stsm.model: no visible global function definition for 'new'
stsm.sgf: no visible global function definition for 'frequency'
char2numeric,stsm: no visible global function definition for
  'frequency'
set.cpar,stsm: no visible global function definition for 'validObject'
set.nopars,stsm: no visible global function definition for
  'validObject'
set.pars,stsm: no visible global function definition for 'validObject'
transPars,stsm: no visible global function definition for 'var'
Undefined global functions or variables:
  fft frequency is.ts na.omit new validObject var
Consider adding
  importFrom("methods", "new", "validObject")
  importFrom("stats", "fft", "frequency", "is.ts", "na.omit", "var")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Running examples in 'studentlife-Ex.R' failed
The error most likely occurred in:

> ### Name: add_block_labels
> ### Title: add_block_labels
> ### Aliases: add_block_labels
> 
> ### ** Examples
> 
> d <- tempdir()
> download_studentlife(location = d, url = "testdata")
Downloading the small sample dataset...
trying URL 'https://raw.githubusercontent.com/frycast/studentlife/master/tests/testthat/testdata/sample/sample_dataset.tar.bz2'
Content type 'application/octet-stream' length 49784 bytes (48 KB)
==================================================
downloaded 48 KB

Download complete
Unzipping the dataset...
Unzip complete
Untarring the dataset...
Untar complete
> 
> tab <- load_SL_tibble(
+   loc = d, schema = "sensing", table = "activity", csv_nrows = 10)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: load_SL_tibble ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/studyStrap.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'caching.Rmd' using rmarkdown
--- finished re-building 'caching.Rmd'

--- re-building 'customizing_styler.Rmd' using rmarkdown
Quitting from lines 50-55 (customizing_styler.Rmd) 
Error: processing vignette 'customizing_styler.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'customizing_styler.Rmd'

--- re-building 'detect-alignment.Rmd' using rmarkdown
--- finished re-building 'detect-alignment.Rmd'

--- re-building 'introducing_styler.Rmd' using rmarkdown
--- finished re-building 'introducing_styler.Rmd'

--- re-building 'performance_improvements.Rmd' using rmarkdown
--- finished re-building 'performance_improvements.Rmd'

SUMMARY: processing the following file failed:
  'customizing_styler.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'SubgrPlots-Ex.R' failed
The error most likely occurred in:

> ### Name: ggplot_radial
> ### Title: Radial (Galbraith) plot for subgroup effect size
> ### Aliases: ggplot_radial
> 
> ### ** Examples
> 
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Error(s) in re-building vignettes:
--- re-building 'package_functions.Rmd' using rmarkdown
Quitting from lines 66-73 (package_functions.Rmd) 
Error: processing vignette 'package_functions.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'package_functions.Rmd'

SUMMARY: processing the following file failed:
  'package_functions.Rmd'

Error: Vignette re-building failed.
Execution halted
identifyGraph: no visible global function definition for 'phyper'
mytriangle: no visible global function definition for 'symbols'
plotGraph: no visible global function definition for 'par'
updateOrgEnvir: no visible global function definition for 'read.table'
Undefined global functions or variables:
  par phyper read.table symbols
Consider adding
  importFrom("graphics", "par", "symbols")
  importFrom("stats", "phyper")
  importFrom("utils", "read.table")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/subspace.Rcheck/00install.out' for details.
'library' or 'require' calls to packages already attached by Depends:
  'ROCR' 'penalized'
  Please remove these calls from your code.
ELF: no visible global function definition for 'pt'
ELF: no visible global function definition for 'qnorm'
ELF: no visible global function definition for 'lm'
ELF: no visible global function definition for 'lowess'
ELF: no visible global function definition for 'dnorm'
ELF: no visible global function definition for 'approx'
subtype: no visible global function definition for 'runif'
subtype: no visible global function definition for 'hclust'
subtype: no visible global function definition for 'dist'
subtype: no visible global function definition for 'cutree'
subtype: no visible global function definition for 'pt'
subtype: no visible global function definition for 'heatmap'
test_subtype_only: no visible global function definition for 'pt'
test_subtype_only: no visible global function definition for 'survdiff'
test_subtype_only: no visible global function definition for 'survfit'
test_subtype_only: no visible global function definition for 'title'
ufun: no visible global function definition for 'dnorm'
ufun: no visible global function definition for 'lowess'
Undefined global functions or variables:
  approx cutree dist dnorm hclust heatmap lm lowess pt qnorm runif
  survdiff survfit title
Consider adding
  importFrom("graphics", "title")
  importFrom("stats", "approx", "cutree", "dist", "dnorm", "hclust",
             "heatmap", "lm", "lowess", "pt", "qnorm", "runif")
to your NAMESPACE file.
Running examples in 'suddengains-Ex.R' failed
The error most likely occurred in:

> ### Name: count_intervals
> ### Title: Count number of between-session intervals available to identify
> ###   sudden gains
> ### Aliases: count_intervals
> 
> ### ** Examples
> 
> # Count between session intervals in "sgdata"
> count_intervals(data = sgdata,
+                 id_var_name = "id",
+                 sg_var_list = c("bdi_s1", "bdi_s2", "bdi_s3", "bdi_s4",
+                                 "bdi_s5", "bdi_s6", "bdi_s7", "bdi_s8",
+                                 "bdi_s9", "bdi_s10", "bdi_s11", "bdi_s12"))
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: count_intervals ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'shinygains.Rmd' using rmarkdown
--- finished re-building 'shinygains.Rmd'

--- re-building 'suddengains-tutorial.Rmd' using rmarkdown
Quitting from lines 24-30 (suddengains-tutorial.Rmd) 
Error: processing vignette 'suddengains-tutorial.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'suddengains-tutorial.Rmd'

SUMMARY: processing the following file failed:
  'suddengains-tutorial.Rmd'

Error: Vignette re-building failed.
Execution halted
'library' or 'require' call to 'tkrplot' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
playSudoku : replot: no visible global function definition for 'par'
playSudoku : replot: no visible global function definition for
  'segments'
playSudoku : replot: no visible global function definition for 'text'
playSudoku: no visible global function definition for 'tktoplevel'
playSudoku: no visible global function definition for 'tkwm.title'
playSudoku: no visible global function definition for 'tkrplot'
playSudoku: no visible global function definition for 'tktext'
playSudoku: no visible global function definition for 'tkscrollbar'
playSudoku : <anonymous>: no visible global function definition for
  'tkyview'
playSudoku: no visible global function definition for 'tkconfigure'
playSudoku : <anonymous>: no visible global function definition for
  'tkset'
playSudoku: no visible global function definition for 'tkpack'
playSudoku: no visible global function definition for 'tcl'
playSudoku: no visible global function definition for 'tkcget'
playSudoku : showz: no visible global function definition for
  'tkrreplot'
playSudoku : type: no visible global function definition for 'tkinsert'
playSudoku : type: no visible global function definition for 'tksee'
playSudoku : kb: no visible global function definition for 'tkdestroy'
playSudoku: no visible global function definition for
  'getGraphicsEvent'
playSudoku: no visible global function definition for 'tkbind'
playSudoku: no visible global function definition for 'tkwait.window'
Undefined global functions or variables:
  getGraphicsEvent par segments tcl text tkbind tkcget tkconfigure
  tkdestroy tkinsert tkpack tkrplot tkrreplot tkscrollbar tksee tkset
  tktext tktoplevel tkwait.window tkwm.title tkyview
Consider adding
  importFrom("grDevices", "getGraphicsEvent")
  importFrom("graphics", "par", "segments", "text")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
SUE.fitted.values: no visible global function definition for
  'model.frame'
SUE.lm: no visible global function definition for 'model.frame'
SUE.lm: no visible global function definition for 'lm'
SUE.lm: no visible global function definition for 'anova'
SUE.residuals: no visible global function definition for 'model.frame'
parameters : para2: no visible global function definition for 'uniroot'
parameters: no visible global function definition for 'optimize'
parameters: no visible global function definition for 'uniroot'
Undefined global functions or variables:
  anova lm model.frame optimize uniroot
Consider adding
  importFrom("stats", "anova", "lm", "model.frame", "optimize",
             "uniroot")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sugrrants.Rcheck/00install.out' for details.
Running examples in 'summariser-Ex.R' failed
The error most likely occurred in:

> ### Name: summary_stats
> ### Title: Calculate summary statistics on a data frame
> ### Aliases: summary_stats
> 
> ### ** Examples
> 
> library(summariser)
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(summariser)
  > 
  > test_check("summariser")
  -- 1. Error: (unknown) (@test_calculations.R#2)  -------------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  -- 2. Error: (unknown) (@test_ci.R#7)  -----------------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. summariser::summary_stats(mydat, a)
   2. summariser:::summary_stats.data.frame(mydat, a)
   3. dplyr::enquo
   4. base::getExportedValue(pkg, name)
   5. base::asNamespace(ns)
   6. base::getNamespace(ns)
   7. base::loadNamespace(name)
   8. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 7 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: (unknown) (@test_calculations.R#2) 
  2. Error: (unknown) (@test_ci.R#7) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/summarytools.Rcheck/00install.out' for details.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    data   2.0Mb
    doc    2.8Mb
Running examples in 'sunburstR-Ex.R' failed
The error most likely occurred in:

> ### Name: sunburst
> ### Title: 'd3.js' Sequence Sunburst Diagrams
> ### Aliases: sunburst
> 
> ### ** Examples
> 
> library(sunburstR)
> 
> # read in sample visit-sequences.csv data provided in source
> # only use first 100 rows to speed package build and check
> #   https://gist.github.com/kerryrodden/7090426#file-visit-sequences-csv
> sequences <- read.csv(
+   system.file("examples/visit-sequences.csv",package="sunburstR")
+   ,header = FALSE
+   ,stringsAsFactors = FALSE
+ )[1:100,]
> 
> sunburst(sequences)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: sunburst ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(sunburstR)
  > 
  > test_check("sunburstR")
  -- 1. Error: sunburstR works with both csv and json data (@test-basic.R#33)  ---
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_warning(sunburst(csvdata = sequences_csv))
    6. sunburstR::sunburst(csvdata = sequences_csv)
    7. sunburstR:::csv_to_hier(data)
    8. dplyr::bind_rows
    9. base::getExportedValue(pkg, name)
   10. base::asNamespace(ns)
   11. base::getNamespace(ns)
   12. base::loadNamespace(name)
   13. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 9 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: sunburstR works with both csv and json data (@test-basic.R#33) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'sunburst-2-0-0.Rmd' using rmarkdown
Quitting from lines 51-54 (sunburst-2-0-0.Rmd) 
Error: processing vignette 'sunburst-2-0-0.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'sunburst-2-0-0.Rmd'

SUMMARY: processing the following file failed:
  'sunburst-2-0-0.Rmd'

Error: Vignette re-building failed.
Execution halted
Malformed Description field: should contain one or more complete sentences.
MCMCCV: no visible global function definition for 'rnorm'
MLCVGauss: no visible global function definition for 'runif'
MLCVGauss: no visible global function definition for 'optim'
SimSunderData: no visible global function definition for 'runif'
SimSunderData: no visible global function definition for 'dist'
SimSunderData: no visible global function definition for 'rnorm'
SimSunderData: no visible global function definition for 'qgamma'
SimSunderData: no visible global function definition for 'pnorm'
SimSunderData: no visible global function definition for 'rmultinom'
Undefined global functions or variables:
  dist optim pnorm qgamma rmultinom rnorm runif
Consider adding
  importFrom("stats", "dist", "optim", "pnorm", "qgamma", "rmultinom",
             "rnorm", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SunsVoc.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
sunter: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
supcluster : itgamma: no visible global function definition for
  'rgamma'
supcluster : itgamma: no visible global function definition for
  'dgamma'
supcluster : itgamma: no visible global function definition for 'runif'
supcluster : itbeta: no visible global function definition for 'rnorm'
supcluster : itbeta: no visible global function definition for 'runif'
supcluster : itj: no visible global function definition for 'dmultinom'
supcluster: no visible global function definition for 'kmeans'
tab1: no visible global function definition for 'image'
tab1: no visible global function definition for 'gray'
tab1: no visible global function definition for 'var'
Undefined global functions or variables:
  dgamma dmultinom gray image kmeans rgamma rnorm runif var
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "image")
  importFrom("stats", "dgamma", "dmultinom", "kmeans", "rgamma", "rnorm",
             "runif", "var")
to your NAMESPACE file.
Call with DUP:
   .C(R_clusterer, E = as.double(E), X = as.double(X), W = as.double(W), 
       P = as.double(P), y = as.double(y), prob = as.double(prob), 
       theta = as.double(theta), lambda = as.double(lambda * n), 
       n = as.integer(n), g = as.integer(g), m = as.integer(m), 
       p = as.integer(p), critflag = as.integer(critflag), penflag = as.integer(penflag), 
       blockflag = as.integer(blockflag), valiflag = as.integer(valiflag), 
       traceflag = as.integer(trace), genliste = integer(lSize), 
       kriterium = double(lSize), DUP = FALSE)
DUP is no longer supported and will be ignored.
.p.1gen: warning in formatC(id, wid = 6): partial argument match of
  'wid' to 'width'
.p.1gen: warning in formatC(s, wid = 4): partial argument match of
  'wid' to 'width'
.p.1gen: warning in formatC(format(c(round(m, digits = digits),
  0.735))[1], wid = 7, dig = 3): partial argument match of 'dig' to
  'digits'
.p.1gen: warning in formatC(format(c(round(m, digits = digits),
  0.735))[1], wid = 7, dig = 3): partial argument match of 'wid' to
  'width'
predict.pelora: warning in matrix(c((1/(1 + exp(-(X[, 1:(noc[i] + 1)]
  %*% koeff))))), nc = 1): partial argument match of 'nc' to 'ncol'
ridge.coef: warning in diag(apply(X, 2, var) * lambda * nrow(X), nr =
  ncol(X)): partial argument match of 'nr' to 'nrow'
aggtrees: no visible global function definition for 'predict'
coef.pelora: no visible global function definition for 'fitted'
dlda: no visible binding for global variable 'var'
logreg: no visible global function definition for 'glm'
logreg: no visible binding for global variable 'binomial'
logreg: no visible global function definition for 'predict'
plot.pelora: no visible global function definition for 'text'
plot.wilma: no visible global function definition for 'fitted'
plot.wilma: no visible global function definition for 'text'
predict.pelora: no visible global function definition for 'fitted'
predict.pelora: no visible global function definition for 'coef'
predict.wilma: no visible global function definition for 'fitted'
print.wilma: no visible global function definition for 'fitted'
ridge.coef: no visible binding for global variable 'var'
sign.change: no visible binding for global variable 'cov'
standardize.genes: no visible binding for global variable 'sd'
Undefined global functions or variables:
  binomial coef cov fitted glm predict sd text var
Consider adding
  importFrom("graphics", "text")
  importFrom("stats", "binomial", "coef", "cov", "fitted", "glm",
             "predict", "sd", "var")
to your NAMESPACE file.
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc    1.3Mb
    libs   2.3Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/superbiclust.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'boa' 'coda'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
superdiag: no visible global function definition for 'as.mcmc.list'
superdiag: no visible global function definition for 'as.mcmc'
superdiag: no visible global function definition for 'runif'
superdiag: no visible global function definition for 'geweke.diag'
superdiag: no visible global function definition for 'heidel.diag'
superdiag: no visible global function definition for 'raftery.diag'
superdiag: no visible global function definition for 'gelman.diag'
Undefined global functions or variables:
  as.mcmc as.mcmc.list gelman.diag geweke.diag heidel.diag raftery.diag
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Running examples in 'superheat-Ex.R' failed
The error most likely occurred in:

> ### Name: superheat
> ### Title: Generate supervised heatmaps.
> ### Aliases: superheat
> 
> ### ** Examples
> 
> # plot a heatmap of the numerical iris variables
> # cluster by species and plot Sepal.Length on the right
> # save the superheat object to access the membership vectors
> sh <- superheat(X = iris[,-c(1, 5)],
+                 yr = iris[,1],
+                 yr.axis.name = "Sepal.Length",
+                 membership.rows = iris$Species)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: superheat ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
'library' or 'require' call to 'gam' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
TrainSuperMDS: no visible global function definition for 'rnorm'
TrainSuperMDSOnce: no visible global function definition for 'cmdscale'
TrainSuperMDSOnce: no visible global function definition for 'quantile'
distmat: no visible global function definition for 'dist'
Undefined global functions or variables:
  cmdscale dist quantile rnorm
Consider adding
  importFrom("stats", "cmdscale", "dist", "quantile", "rnorm")
to your NAMESPACE file.
Running examples in 'superml-Ex.R' failed
The error most likely occurred in:

> ### Name: GridSearchCV
> ### Title: Grid Search CV
> ### Aliases: GridSearchCV
> 
> ### ** Examples
> 
> 
> ## ------------------------------------------------
> ## Method `GridSearchCV$new`
> ## ------------------------------------------------
> 
> rf <- RFTrainer$new()
> gst <-GridSearchCV$new(trainer = rf,
+                       parameters = list(n_estimators = c(100),
+                                         max_depth = c(5,2,10)),
+                                         n_folds = 3,
+                                         scoring = c('accuracy','auc'))
> 
> ## ------------------------------------------------
> ## Method `GridSearchCV$fit`
> ## ------------------------------------------------
> 
> rf <- RFTrainer$new()
> gst <-GridSearchCV$new(trainer = rf,
+                       parameters = list(n_estimators = c(100),
+                                         max_depth = c(5,2,10)),
+                                         n_folds = 3,
+                                         scoring = c('accuracy','auc'))
> data("iris")
> gst$fit(iris, "Species")
[1] "entering grid search"
[1] "In total, 3 models will be trained"
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Guide-to-CountVectorizer.Rmd' using rmarkdown
--- finished re-building 'Guide-to-CountVectorizer.Rmd'

--- re-building 'Guide-to-TfidfVectorizer.Rmd' using rmarkdown
--- finished re-building 'Guide-to-TfidfVectorizer.Rmd'

--- re-building 'introduction.Rmd' using rmarkdown
Quitting from lines 62-76 (introduction.Rmd) 
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
package or namespace load failed for 'caret' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'introduction.Rmd'

SUMMARY: processing the following file failed:
  'introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(supernova)
  > 
  > test_check("supernova")
  -- 1. Error: (unknown) (@test-generate_models.R#3)  ----------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  -- 2. Error: (unknown) (@test-supernova.r#2)  ----------------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 64 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: (unknown) (@test-generate_models.R#3) 
  2. Error: (unknown) (@test-supernova.r#2) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Superpower.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SupMZ.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/suppdata.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/surv2sampleComp.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
NB: .First.lib is obsolete and will not be used in R >= 3.0.0

plot.survAUC: no visible global function definition for 'lines'
plot.survErr: no visible global function definition for 'lines'
schemper: no visible global function definition for 'predict'
schemper: no visible global function definition for 'survfit'
schemper: no visible global function definition for 'approx'
Undefined global functions or variables:
  approx lines predict survfit
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "approx", "predict")
to your NAMESPACE file.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Est.PH: no visible global function definition for 'coxph'
Inf.Cval: no visible global function definition for 'rexp'
Inf.Cval: no visible global function definition for 'var'
Inf.Cval.Delta: no visible global function definition for 'rexp'
Inf.Cval.Delta: no visible global function definition for 'var'
cvC: no visible global function definition for 'coxph'
cvC: no visible global function definition for 'weighted.mean'
Undefined global functions or variables:
  coxph rexp var weighted.mean
Consider adding
  importFrom("stats", "rexp", "var", "weighted.mean")
to your NAMESPACE file.
pearson: no visible global function definition for 'cor'
plot.survcorr: no visible global function definition for 'pnorm'
plot.survcorr: no visible global function definition for 'par'
plot.survcorr: no visible global function definition for 'points'
survcorr: no visible global function definition for 'model.frame'
survcorr: no visible global function definition for 'qnorm'
survcorr: no visible global function definition for 'runif'
survcorr: no visible global function definition for 'pnorm'
survcorr: no visible global function definition for 'var'
survcorr: no visible global function definition for 'qt'
Undefined global functions or variables:
  cor model.frame par pnorm points qnorm qt runif var
Consider adding
  importFrom("graphics", "par", "points")
  importFrom("stats", "cor", "model.frame", "pnorm", "qnorm", "qt",
             "runif", "var")
to your NAMESPACE file.
installed size is  8.6Mb
  sub-directories of 1Mb or more:
    R      1.7Mb
    doc    2.2Mb
    libs   2.2Mb
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
AER: no visible binding for global variable 'survexp.fr'
AER: no visible global function definition for 'na.omit'
AER: no visible global function definition for 'survexp'
AER: no visible global function definition for 'poisson'
AER: no visible global function definition for 'glm'
AER: no visible global function definition for 'qnorm'
LR: no visible binding for global variable 'survexp.fr'
LR: no visible global function definition for 'na.omit'
LR: no visible global function definition for 'survexp'
LR: no visible global function definition for 'pchisq'
SMR: no visible binding for global variable 'survexp.fr'
SMR: no visible global function definition for 'na.omit'
SMR: no visible global function definition for 'survexp'
SMR: no visible global function definition for 'qnorm'
SMR: no visible global function definition for 'pchisq'
SMR: no visible global function definition for 'glm'
SMR: no visible binding for global variable 'poisson'
survexp_plot: no visible binding for global variable 'survexp.fr'
survexp_plot: no visible global function definition for 'na.omit'
survexp_plot: no visible global function definition for 'par'
survexp_plot: no visible global function definition for 'survfit'
survexp_plot: no visible global function definition for 'survexp'
survexp_plot: no visible global function definition for 'lines'
survexp_plot: no visible global function definition for 'legend'
survexp_plot: no visible global function definition for 'curve'
survexp_plot: no visible global function definition for 'arrows'
survexp_plot: no visible global function definition for 'points'
Undefined global functions or variables:
  arrows curve glm legend lines na.omit par pchisq points poisson qnorm
  survexp survexp.fr survfit
Consider adding
  importFrom("graphics", "arrows", "curve", "legend", "lines", "par",
             "points")
  importFrom("stats", "glm", "na.omit", "pchisq", "poisson", "qnorm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/surveybootstrap.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/surveydata.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/surveysd.Rcheck/00install.out' for details.
'library' or 'require' call to 'survival' which was already attached by Depends.
  Please remove these calls from your code.
Survgini: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  pchisq
Consider adding
  importFrom("stats", "pchisq")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SurvGSD.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/survHE.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'survC1' 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Est.HR.FUN: no visible global function definition for 'coxph'
Est.HR.FUN: no visible global function definition for 'basehaz'
Est.HR.FUN: no visible global function definition for 'approx'
Ghat.FUN: no visible global function definition for 'survfit'
IDI.INF: no visible global function definition for 'kmcens'
IDI.INF: no visible global function definition for 'quantile'
IDI.INF.GRAPH: no visible global function definition for 'lines'
IDI.INF.GRAPH: no visible global function definition for 'abline'
IDI.INF.GRAPH: no visible global function definition for 'points'
IDI.INF.GRAPH: no visible global function definition for 'title'
PTB.IDI.FUN: no visible global function definition for 'rexp'
shade: no visible global function definition for 'polygon'
Undefined global functions or variables:
  abline approx basehaz coxph kmcens lines points polygon quantile rexp
  survfit title
Consider adding
  importFrom("graphics", "abline", "lines", "points", "polygon", "title")
  importFrom("stats", "approx", "quantile", "rexp")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/survivalAnalysis.Rcheck/00install.out' for details.
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    R      1.1Mb
    data   3.2Mb
    doc    3.4Mb
Malformed Description field: should contain one or more complete sentences.
installed size is 12.1Mb
  sub-directories of 1Mb or more:
    data  12.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/survminer.Rcheck/00install.out' for details.
Running examples in 'survParamSim-Ex.R' failed
The error most likely occurred in:

> ### Name: surv_param_sim
> ### Title: Simulation of parametric survival model
> ### Aliases: surv_param_sim surv_param_sim_resample
> 
> ### ** Examples
> 
> library(survival)
> 
> fit.lung <- survreg(Surv(time, status) ~ sex + ph.ecog, data = lung)
> 
> object <- fit.lung
> n.rep  <-  30
> newdata <-
+   tibble::as_tibble(dplyr::select(lung, time, status, sex, ph.ecog)) %>%
+   tidyr::drop_na()
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: %>% ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'survParamSim.Rmd' using rmarkdown
Quitting from lines 18-24 (survParamSim.Rmd) 
Error: processing vignette 'survParamSim.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'survParamSim.Rmd'

SUMMARY: processing the following file failed:
  'survParamSim.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/survtmle.Rcheck/00install.out' for details.
Calls with DUP:
   .C("myInversion", Senv$diag, Senv$env, Senv$xenv, Senv$N, Senv$Nenv, 
       Senv$Nplus1, DUP = FALSE, PACKAGE = "svcm")
   .C("myTrace", Senv$diag, Senv$env, Senv$xenv, Senv$N, Senv$Nenv, 
       Senv$Nplus1, BBenv$diag, BBenv$env, BBenv$xenv, BBenv$N, 
       BBenv$Nenv, BBenv$Nplus1, ED = ED, DUP = FALSE, PACKAGE = "svcm")
   .C("dsC2env", N, A@x, as.integer(A@i), as.integer(A@p), diagvec = diagvec, 
       env = env, xenv = as.integer(xenv), DUP = FALSE)
DUP is no longer supported and will be ignored.
Malformed Description field: should contain one or more complete sentences.
dlgMessage.tcltkGUI: no visible global function definition for 'alarm'
dlgMessage.tcltkGUI: no visible global function definition for
  'bringToTop'
Undefined global functions or variables:
  alarm bringToTop
Consider adding
  importFrom("grDevices", "bringToTop")
  importFrom("utils", "alarm")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'lattice'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
svd3dplot: no visible global function definition for 'wireframe'
svd3dplot: no visible global function definition for 'levelplot'
Undefined global functions or variables:
  levelplot wireframe
Malformed Description field: should contain one or more complete sentences.
startHttpServer : <anonymous> : Rjsonp: no visible global function
  definition for 'localeToCharset'
Undefined global functions or variables:
  localeToCharset
Consider adding
  importFrom("utils", "localeToCharset")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
.onAttach : svBrowser: no visible global function definition for
  'browseURL'
.onAttach: no visible global function definition for 'loadhistory'
Undefined global functions or variables:
  browseURL loadhistory
Consider adding
  importFrom("utils", "browseURL", "loadhistory")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SVMMaj.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
svycox.calibrate: no visible global function definition for 'quantile'
svycox.calibrate: no visible binding for global variable 'median'
svycox.calibrate: no visible global function definition for
  'as.formula'
svycox.calibrate: no visible global function definition for 'arrows'
svycox.calibrate: no visible global function definition for 'abline'
svycox.nomogram: no visible global function definition for 'predict'
svycox.nomogram: no visible global function definition for 'as.formula'
svycox.validate : internal.validate.func: no visible global function
  definition for 'as.formula'
svycox.validate : internal.validate.func: no visible global function
  definition for 'formula'
Undefined global functions or variables:
  abline arrows as.formula formula median predict quantile
Consider adding
  importFrom("graphics", "abline", "arrows")
  importFrom("stats", "as.formula", "formula", "median", "predict",
             "quantile")
to your NAMESPACE file.
additional_comp: no visible global function definition for 'aggregate'
additional_compPV : <anonymous>: no visible global function definition
  for 'aggregate'
cor.aux.func : <anonymous>: no visible global function definition for
  'cov.wt'
eta.func : <anonymous>: no visible global function definition for 'lm'
eta.func : <anonymous>: no visible global function definition for
  'anova'
glm.dummy.no.std: no visible global function definition for
  'as.formula'
pv_by: no visible binding for global variable 'var'
pv_perc: no visible binding for global variable 'var'
pv_quantile: no visible binding for global variable 'var'
svyPVcor: no visible global function definition for 'update'
svyPVcor: no visible global function definition for 'var'
svyPVeta: no visible global function definition for 'update'
svyPVeta: no visible global function definition for 'var'
svyPVglm: no visible global function definition for 'gaussian'
svyPVglm: no visible binding for global variable 'as.formula'
svyPVglm: no visible binding for global variable 'var'
svyPVglm: no visible global function definition for 'pt'
svyPVttest: no visible binding for global variable 'as.formula'
svyPVttest: no visible global function definition for 'var'
svyPVttest: no visible global function definition for 'pt'
svyPVttest: no visible binding for global variable 'var'
t.test.aux: no visible global function definition for 'as.formula'
t.test.aux: no visible global function definition for 'complete.cases'
Undefined global functions or variables:
  aggregate anova as.formula complete.cases cov.wt gaussian lm pt
  update var
Consider adding
  importFrom("stats", "aggregate", "anova", "as.formula",
             "complete.cases", "cov.wt", "gaussian", "lm", "pt",
             "update", "var")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/sweep.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'swephRdata'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/swfscDAS.Rcheck/00install.out' for details.
Running examples in 'swfscMisc-Ex.R' failed
The error most likely occurred in:

> ### Name: ggBiplot
> ### Title: ggBiplot
> ### Aliases: ggBiplot
> 
> ### ** Examples
> 
> pc.cr <- princomp(USArrests, cor = TRUE)
> ggBiplot(pc.cr)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: ggBiplot ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/swgee.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SwimmeR.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'SWIM-vignette.Rmd' using rmarkdown
Warning: Computation failed in `stat_ecdf()`:
there is no package called 'spatstat'
Warning: Computation failed in `stat_ecdf()`:
there is no package called 'spatstat'
Warning: Computation failed in `stat_ecdf()`:
there is no package called 'spatstat'
Warning: Computation failed in `stat_ecdf()`:
there is no package called 'spatstat'
Warning in block_exec(params) :
  Failed to tidy R code in chunk 'loading-packages'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'

Quitting from lines 405-408 (SWIM-vignette.Rmd) 
Error: processing vignette 'SWIM-vignette.Rmd' failed with diagnostics:
package or namespace load failed for 'ggpubr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'SWIM-vignette.Rmd'

SUMMARY: processing the following file failed:
  'SWIM-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/swissdd.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/swissparl.Rcheck/00install.out' for details.
Packages in Depends field not imported from:
  'MASS' 'fda' 'splines'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
fj_pl: no visible global function definition for 'getbasismatrix'
fj_pl: no visible global function definition for 'create.bspline.basis'
fj_pl: no visible global function definition for 'getbasispenalty'
forward_backward.quantities : <anonymous>: no visible global function
  definition for 'dnorm'
function_cases1AND2: no visible global function definition for 'dnorm'
function_cases3AND4: no visible global function definition for 'dnorm'
pij_iid: no visible global function definition for 'dnorm'
pilj: no visible global function definition for 'dnorm'
updateLambda: no visible global function definition for 'optimize'
Undefined global functions or variables:
  create.bspline.basis dnorm getbasismatrix getbasispenalty optimize
Consider adding
  importFrom("stats", "dnorm", "optimize")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'How_swmmr_reads_and_writes_files.Rmd' using rmarkdown
SWMM executable not found.
--- finished re-building 'How_swmmr_reads_and_writes_files.Rmd'

--- re-building 'How_to_autocalibrate_a_SWMM_model_with_swmmr.Rmd' using rmarkdown
--- finished re-building 'How_to_autocalibrate_a_SWMM_model_with_swmmr.Rmd'

--- re-building 'How_to_convert_between_GIS_data_and_SWMM_with_swmmr.Rmd' using rmarkdown
SWMM executable not found.
Quitting from lines 26-31 (How_to_convert_between_GIS_data_and_SWMM_with_swmmr.Rmd) 
Error: processing vignette 'How_to_convert_between_GIS_data_and_SWMM_with_swmmr.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'How_to_convert_between_GIS_data_and_SWMM_with_swmmr.Rmd'

SUMMARY: processing the following file failed:
  'How_to_convert_between_GIS_data_and_SWMM_with_swmmr.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SWMPrExtension.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/SWMPr.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'cplexAPI'
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    extdata   4.2Mb
Package suggested but not available for checking: 'cplexAPI'
Package suggested but not available for checking: 'cplexAPI'
installed size is 13.2Mb
  sub-directories of 1Mb or more:
    libs  12.4Mb
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    libs   5.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/syllabifyr.Rcheck/00install.out' for details.
Packages suggested but not available for checking: 'sylly.de', 'sylly.es'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/symbolicDA.Rcheck/00install.out' for details.
symbol: no visible global function definition for 'plot.new'
symbol: no visible global function definition for 'plot.window'
symbol: no visible global function definition for 'axis'
symbol: no visible global function definition for 'box'
symbol: no visible global function definition for 'title'
symbol: no visible global function definition for 'rainbow'
symbol: no visible global function definition for 'hsv'
symbol: no visible global function definition for 'rect'
symbol: no visible global function definition for 'polygon'
symbol: no visible global function definition for 'lines'
symbol: no visible global function definition for 'text'
Undefined global functions or variables:
  axis box hsv lines plot.new plot.window polygon rainbow rect text
  title
Consider adding
  importFrom("grDevices", "hsv", "rainbow")
  importFrom("graphics", "axis", "box", "lines", "plot.new",
             "plot.window", "polygon", "rect", "text", "title")
to your NAMESPACE file.
installed size is  8.5Mb
  sub-directories of 1Mb or more:
    libs     6.4Mb
    mylibs   1.3Mb
Package in Depends field not imported from: 'fields'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
cwt_fw: no visible global function definition for 'fft'
cwt_iw: no visible global function definition for 'fft'
est_riskshrink_thresh: no visible global function definition for
  'median'
Undefined global functions or variables:
  fft median
Consider adding
  importFrom("stats", "fft", "median")
to your NAMESPACE file.
'library' or 'require' calls to packages already attached by Depends:
  'tcltk' 'tkrplot'
  Please remove these calls from your code.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/synoptReg.Rcheck/00install.out' for details.
mainNetFunction: no visible global function definition for 'png'
mainNetFunction: no visible global function definition for 'lines'
mainNetFunction: no visible global function definition for 'legend'
mainNetFunction: no visible global function definition for 'dev.off'
plotROC: no visible global function definition for 'lines'
simulatedData: no visible global function definition for 'rpois'
simulatedData : <anonymous>: no visible global function definition for
  'rpois'
simulatedData : rlognormpois: no visible global function definition for
  'rnorm'
simulatedData : rlognormpois: no visible global function definition for
  'rpois'
Undefined global functions or variables:
  dev.off legend lines png rnorm rpois
Consider adding
  importFrom("grDevices", "dev.off", "png")
  importFrom("graphics", "legend", "lines")
  importFrom("stats", "rnorm", "rpois")
to your NAMESPACE file.
'library' or 'require' calls in package code:
  'LowRankQP' 'rgenoud'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
fn.V: no visible global function definition for 'LowRankQP'
gaps.plot: no visible global function definition for 'abline'
path.plot: no visible global function definition for 'lines'
path.plot: no visible global function definition for 'abline'
path.plot: no visible global function definition for 'legend'
synth: no visible binding for global variable 'sd'
synth: no visible binding for global variable 'var'
synth: no visible global function definition for 'LowRankQP'
Undefined global functions or variables:
  LowRankQP abline legend lines sd var
Consider adding
  importFrom("graphics", "abline", "legend", "lines")
  importFrom("stats", "sd", "var")
to your NAMESPACE file.
Running examples in 'SynthTools-Ex.R' failed
The error most likely occurred in:

> ### Name: pertRates
> ### Title: Calculates perturbation rates of overall data set and specific
> ###   variables.
> ### Aliases: pertRates
> ### Keywords: imputation perturbation synthetic
> 
> ### ** Examples
> 
> #PPA is observed data set, PPAps2 is a partially synthetic data set derived from the observed data.
> #age17plus, marriage, and vet are three categorical variables within these data sets.
> 
> pertRates(PPA, PPAps2, c("age17plus", "marriage", "vet"))
[1] "Overall perturbation rate: 0.191"
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: pertRates ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Package suggested but not available for checking: 'unix'
Running 'testthat.R' [10s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > Sys.unsetenv("R_TESTS") # Becasue https://github.com/hadley/testthat/issues/144
  > 
  > library(testthat)
  > library(syuzhet)
  > 
  > test_check("syuzhet")
  -- 1. Error: (unknown) (@test-syuzhet.R#26)  -----------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. syuzhet::get_sentiment(sents, method = "nrc")
   2. dplyr::filter_
   3. base::getExportedValue(pkg, name)
   4. base::asNamespace(ns)
   5. base::getNamespace(ns)
   6. base::loadNamespace(name)
   7. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 5 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test-syuzhet.R#26) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'syuzhet-vignette.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Quitting from lines 87-100 (syuzhet-vignette.Rmd) 
Error: processing vignette 'syuzhet-vignette.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'syuzhet-vignette.Rmd'

SUMMARY: processing the following file failed:
  'syuzhet-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/taber.Rcheck/00install.out' for details.
.checkDimAndTest: no visible global function definition for
  'chisq.test'
.checkDimAndTest: no visible global function definition for
  'fisher.test'
plotTable1Heatmap: no visible global function definition for 'par'
plotTable1Heatmap: no visible global function definition for 'image'
plotTable1Heatmap: no visible global function definition for 'abline'
plotTable1Heatmap: no visible global function definition for 'axis'
plotTable1Heatmap: no visible global function definition for 'text'
plotTable1Heatmap: no visible global function definition for 'legend'
plotTable1Heatmap: no visible global function definition for 'box'
Undefined global functions or variables:
  abline axis box chisq.test fisher.test image legend par text
Consider adding
  importFrom("graphics", "abline", "axis", "box", "image", "legend",
             "par", "text")
  importFrom("stats", "chisq.test", "fisher.test")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/table.express.Rcheck/00install.out' for details.
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    doc   5.8Mb
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'grid' which was already attached by Depends.
  Please remove these calls from your code.
'library' or 'require' call to 'perturb' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: 'grid'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
cellgram: no visible global function definition for 'grid.rect'
cellgram: no visible global function definition for 'gpar'
cellgram: no visible global function definition for 'grid.segments'
cellgram: no visible global function definition for 'grid.circle'
cellgram: no visible global function definition for 'grid.polygon'
cellgram: no visible global function definition for 'grid.text'
cellgram: no visible global function definition for 'unit'
compare: no visible global function definition for 'sd'
tableplot.colldiag: no visible global function definition for
  'colldiag'
tableplot.colldiag: no visible global function definition for 'xtabs'
tableplot.default: no visible global function definition for
  'grid.newpage'
tableplot.default: no visible global function definition for
  'grid.layout'
tableplot.default: no visible global function definition for 'unit'
tableplot.default: no visible global function definition for
  'pushViewport'
tableplot.default: no visible global function definition for 'viewport'
tableplot.default: no visible global function definition for
  'grid.text'
tableplot.default: no visible global function definition for
  'upViewport'
tableplot.default: no visible global function definition for 'gpar'
tableplot.default: no visible global function definition for
  'grid.rect'
tableplot.default: no visible global function definition for
  'popViewport'
Undefined global functions or variables:
  colldiag gpar grid.circle grid.layout grid.newpage grid.polygon
  grid.rect grid.segments grid.text popViewport pushViewport sd unit
  upViewport viewport xtabs
Consider adding
  importFrom("stats", "sd", "xtabs")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tab.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tabr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tabshiftr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tabularaster.Rcheck/00install.out' for details.
installed size is 11.5Mb
  sub-directories of 1Mb or more:
    java  11.5Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tadaatoolbox.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'pmatch'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/takos.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' calls in package code:
  'gdata' 'ggplot2' 'grid' 'lattice' 'xtable'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package suggested but not available for checking: 'tashudata'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tashu.Rcheck/00install.out' for details.
Packages suggested but not available for checking: 'MonetDBLite', 'duckdb'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/taxadb.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/taxa.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/taxlist.Rcheck/00install.out' for details.
BootTree: no visible global function definition for 'hclust'
BootTree: no visible global function definition for 'dist'
BootTree: no visible global function definition for 'as.dist'
BootTree: no visible global function definition for 'cor'
BootTree: no visible binding for global variable 'var'
Pgpd: no visible global function definition for 'optim'
Pgpd : <anonymous>: no visible global function definition for 'optim'
Pgpd: no visible global function definition for 'var'
Pgpd: no visible global function definition for 'rnorm'
Pgpd: no visible global function definition for 'quantile'
Pvalue: no visible global function definition for 'rnorm'
SigTree: no visible global function definition for 'data'
TreeStat: no visible global function definition for 'hclust'
TreeStat: no visible global function definition for 'as.dist'
TreeStat: no visible global function definition for 'dist'
TreeStat: no visible global function definition for 'cor'
plot.best: no visible global function definition for 'hclust'
plot.best: no visible global function definition for 'as.dist'
plot.best: no visible global function definition for 'dist'
plot.best: no visible global function definition for 'cor'
treetext: no visible global function definition for 'par'
treetext: no visible global function definition for 'text'
Undefined global functions or variables:
  as.dist cor data dist hclust optim par quantile rnorm text var
Consider adding
  importFrom("graphics", "par", "text")
  importFrom("stats", "as.dist", "cor", "dist", "hclust", "optim",
             "quantile", "rnorm", "var")
  importFrom("utils", "data")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tbl2xts.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tbrf.Rcheck/00install.out' for details.
installed size is 12.2Mb
  sub-directories of 1Mb or more:
    doc  11.2Mb
Malformed Description field: should contain one or more complete sentences.
Error(s) in re-building vignettes:
--- re-building 'tourism-comp.Rmd' using rmarkdown
Quitting from lines 59-83 (tourism-comp.Rmd) 
Error: processing vignette 'tourism-comp.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'tourism-comp.Rmd'

SUMMARY: processing the following file failed:
  'tourism-comp.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tcR.Rcheck/00install.out' for details.
cluster_cutoff_at_first_empty_bin: no visible global function
  definition for 'hist'
mapper1D: no visible global function definition for 'dist'
mapper1D: no visible global function definition for 'as.dist'
mapper1D: no visible global function definition for 'hclust'
mapper1D: no visible global function definition for 'cutree'
mapper2D: no visible global function definition for 'dist'
mapper2D: no visible global function definition for 'as.dist'
mapper2D: no visible global function definition for 'hclust'
mapper2D: no visible global function definition for 'cutree'
Undefined global functions or variables:
  as.dist cutree dist hclust hist
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "as.dist", "cutree", "dist", "hclust")
to your NAMESPACE file.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    libs   3.9Mb
Packages in Depends field not imported from:
  'RSEIS' 'pracma' 'signal'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
CalcCorners: no visible global function definition for 'abline'
ConvDiffCoef: no visible global function definition for 'pascal'
ConvolveTrace: no visible global function definition for 'filter'
DeconTrace: no visible global function definition for 'as.Zpg'
DeconTrace: no visible global function definition for 'butter'
DeconTrace: no visible global function definition for 'filter'
GetDPZ: no visible global function definition for 'data'
MakeDPZ: no visible global function definition for 'bilinear'
MakeDPZ: no visible global function definition for 'fft'
MakeDPZ: no visible global function definition for 'lines'
MakeDPZ: no visible global function definition for 'legend'
MatchCoefDPZ : CalcMisfit: no visible global function definition for
  'fft'
MatchCoefDPZ : CalcMisfit: no visible global function definition for
  'filter'
MatchCoefDPZ : generate: no visible global function definition for
  'runif'
MatchCoefDPZ : generate: no visible global function definition for
  'rnorm'
MatchCoefDPZ: no visible global function definition for 'fft'
MatchCoefDPZ: no visible global function definition for 'filter'
MatchCoefDPZ: no visible global function definition for 'Zpg'
MatchCoefDPZ: no visible global function definition for 'lines'
MatchCoefDPZ: no visible global function definition for 'abline'
Metropolis: no visible global function definition for 'runif'
PZ2Coef: no visible global function definition for 'Poly'
PlotResp: no visible global function definition for 'fft'
PlotResp: no visible global function definition for 'filter'
PlotResp: no visible global function definition for 'lines'
Undefined global functions or variables:
  Poly Zpg abline as.Zpg bilinear butter data fft filter legend lines
  pascal rnorm runif
Consider adding
  importFrom("graphics", "abline", "legend", "lines")
  importFrom("stats", "fft", "filter", "rnorm", "runif")
  importFrom("utils", "data")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TDMR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/teachingApps.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TeachingSampling.Rcheck/00install.out' for details.
Running examples in 'tealeaves-Ex.R' failed
The error most likely occurred in:

> ### Name: tleaves
> ### Title: 'tleaves': find leaf temperatures for multiple parameter sets
> ### Aliases: tleaves tleaf
> 
> ### ** Examples
> 
> # tleaf for single parameter set:
> 
> leaf_par <- make_leafpar()
> enviro_par <- make_enviropar()
> constants <- make_constants()
> tleaf(leaf_par, enviro_par, constants)

Solving for T_leaf ...Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: tleaf ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'parameter-functions.Rmd' using rmarkdown
Quitting from lines 45-55 (parameter-functions.Rmd) 
Error: processing vignette 'parameter-functions.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'parameter-functions.Rmd'

--- re-building 'tealeaves-intermediate.Rmd' using rmarkdown
Quitting from lines 13-23 (tealeaves-intermediate.Rmd) 
Error: processing vignette 'tealeaves-intermediate.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'tealeaves-intermediate.Rmd'

--- re-building 'tealeaves-introduction.Rmd' using rmarkdown
Loading required package: units
udunits system database from D:/temp/RtmpMHnmig/RLIBS_dfb841ba66c2/units/share/udunits
Quitting from lines 40-54 (tealeaves-introduction.Rmd) 
Error: processing vignette 'tealeaves-introduction.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'tealeaves-introduction.Rmd'

SUMMARY: processing the following files failed:
  'parameter-functions.Rmd' 'tealeaves-intermediate.Rmd'
  'tealeaves-introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/teamcolors.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/telefit.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TELP.Rcheck/00install.out' for details.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
Running examples in 'Tendril-Ex.R' failed
The error most likely occurred in:

> ### Name: Tendril
> ### Title: Tendril
> ### Aliases: Tendril
> 
> ### ** Examples
> 
> data <- Tendril(mydata = TendrilData,
+ rotations = Rotations,
+ AEfreqThreshold=9,
+ Tag = "Comment",
+ Treatments = c("placebo", "active"),
+ Unique.Subject.Identifier = "subjid",
+ Terms = "ae",
+ Treat = "treatment",
+ StartDay = "day",
+ SubjList = SubjList,
+ SubjList.subject = "subjid",
+ SubjList.treatment = "treatment"
+ )
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: Tendril ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'TendrilUsage.Rmd' using rmarkdown
Quitting from lines 29-51 (TendrilUsage.Rmd) 
Error: processing vignette 'TendrilUsage.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'TendrilUsage.Rmd'

SUMMARY: processing the following file failed:
  'TendrilUsage.Rmd'

Error: Vignette re-building failed.
Execution halted
Calls with DUP:
   .C(tensoraCmulhelper, dimx = as.integer(c(outerx, inner, para)), 
       as.integer(c(inner, outery, para)), as.integer(c(outerx, 
           outery, para)), as.complex(X[xtidx]), as.complex(Y[ytidx]), 
       erg = complex(outerx * outery * para), NAOK = TRUE, DUP = FALSE)
   .C(tensoramulhelper, dimx = as.integer(c(outerx, inner, para)), 
       as.integer(c(inner, outery, para)), as.integer(c(outerx, 
           outery, para)), as.numeric(X[xtidx]), as.numeric(Y[ytidx]), 
       erg = numeric(outerx * outery * para), NAOK = TRUE, DUP = FALSE)
DUP is no longer supported and will be ignored.
S3 methods shown with full name in documentation object 'mean.tensor':
  'mean.tensor'

S3 methods shown with full name in documentation object 'solve.tensor':
  'solve.tensor'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
TER.deesc.1.B : A1.f: no visible binding for '<<-' assignment to 'ID'
TER.deesc.1.B : A1.f: no visible binding for global variable 'ID'
TER.deesc.1.B : A2.n.f: no visible binding for '<<-' assignment to 'ID'
TER.deesc.1.B : A2.n.f: no visible binding for global variable 'ID'
TER.deesc.1.B: no visible binding for '<<-' assignment to 'ID'
TER.deesc.1.B: no visible binding for global variable 'ID'
TER.deesc.A.B : A1.f: no visible binding for '<<-' assignment to 'ID'
TER.deesc.A.B : A1.f: no visible binding for global variable 'ID'
TER.deesc.A.B : A3.f: no visible binding for '<<-' assignment to 'ID'
TER.deesc.A.B : A3.f: no visible binding for global variable 'ID'
TER.deesc.A.B : A2.f: no visible binding for '<<-' assignment to 'ID'
TER.deesc.A.B : A2.f: no visible binding for global variable 'ID'
TER.deesc.A.B : B1.f: no visible binding for '<<-' assignment to 'ID'
TER.deesc.A.B : B1.f: no visible binding for global variable 'ID'
TER.deesc.A.B: no visible binding for '<<-' assignment to 'ID'
TER.deesc.A.B: no visible binding for global variable 'ID'
Undefined global functions or variables:
  ID
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tergmLite.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tergm.Rcheck/00install.out' for details.
installed size is 95.5Mb
  sub-directories of 1Mb or more:
    R      2.2Mb
    gdal   2.0Mb
    libs  84.5Mb
    proj   6.0Mb
installed size is 29.1Mb
  sub-directories of 1Mb or more:
    doc        1.0Mb
    libs      13.9Mb
    tessdata  14.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TestDataImputation.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'gurobi'
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc    1.2Mb
    libs   2.2Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TestDimorph.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tetraclasse.Rcheck/00install.out' for details.
installed size is  8.5Mb
  sub-directories of 1Mb or more:
    data   2.6Mb
    doc    2.9Mb
    libs   2.4Mb
Running examples in 'textfeatures-Ex.R' failed
The error most likely occurred in:

> ### Name: textfeatures
> ### Title: textfeatures
> ### Aliases: textfeatures
> 
> ### ** Examples
> 
> 
> ## the text of five of Trump's most retweeted tweets
> trump_tweets <- c(
+   "#FraudNewsCNN #FNN https://t.co/WYUnHjjUjg",
+   "TODAY WE MAKE AMERICA GREAT AGAIN!",
+   paste("Why would Kim Jong-un insult me by calling me \"old,\" when I would",
+     "NEVER call him \"short and fat?\" Oh well, I try so hard to be his",
+     "friend - and maybe someday that will happen!"),
+   paste("Such a beautiful and important evening! The forgotten man and woman",
+     "will never be forgotten again. We will all come together as never before"),
+   paste("North Korean Leader Kim Jong Un just stated that the \"Nuclear",
+     "Button is on his desk at all times.\" Will someone from his depleted and",
+     "food starved regime please inform him that I too have a Nuclear Button,",
+     "but it is a much bigger &amp; more powerful one than his, and my Button",
+     "works!")
+ )
> 
> ## get the text features of a character vector
> textfeatures(trump_tweets)
[32m<U+21AA>[39m [38;5;244mCounting features in text...[39m
[32m<U+21AA>[39m [38;5;244mSentiment analysis...[39m
[32m<U+21AA>[39m [38;5;244mParts of speech...[39m
[32m<U+21AA>[39m [38;5;244mWord dimensions started[39m
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: textfeatures ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(textfeatures)
  > 
  > test_check("textfeatures")
  [32m<U+21AA>[39m [38;5;244mCounting features in text...[39m
  [32m<U+21AA>[39m [38;5;244mSentiment analysis...[39m
  [32m<U+21AA>[39m [38;5;244mParts of speech...[39m
  [32m<U+21AA>[39m [38;5;244mWord dimensions started[39m
  -- 1. Error: main textfeatures function (@test-main.R#18)  ---------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. textfeatures::textfeatures(txt)
   2. textfeatures:::textfeatures.character(txt)
   3. dplyr::bind_cols
   4. base::getExportedValue(pkg, name)
   5. base::asNamespace(ns)
   6. base::getNamespace(ns)
   7. base::loadNamespace(name)
   8. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: printing output (@test-verbose.R#16)  -----------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_output(textfeatures(txt))
   11. textfeatures:::textfeatures.character(txt)
   12. dplyr::bind_cols
   13. base::getExportedValue(pkg, name)
   14. base::asNamespace(ns)
   15. base::getNamespace(ns)
   16. base::loadNamespace(name)
   17. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: main textfeatures function (@test-main.R#18) 
  2. Error: printing output (@test-verbose.R#16) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TextForecast.Rcheck/00install.out' for details.
installed size is  8.6Mb
  sub-directories of 1Mb or more:
    data   8.5Mb
Error(s) in re-building vignettes:
--- re-building 'a_start_here.Rmd' using rmarkdown
--- finished re-building 'a_start_here.Rmd'

--- re-building 'b_document_clustering.Rmd' using rmarkdown
--- finished re-building 'b_document_clustering.Rmd'

--- re-building 'c_topic_modeling.Rmd' using rmarkdown
--- finished re-building 'c_topic_modeling.Rmd'

--- re-building 'd_text_embeddings.Rmd' using rmarkdown
--- finished re-building 'd_text_embeddings.Rmd'

--- re-building 'e_doc_summarization.Rmd' using rmarkdown
--- finished re-building 'e_doc_summarization.Rmd'

--- re-building 'f_tidytext_example.Rmd' using rmarkdown
Quitting from lines 30-83 (f_tidytext_example.Rmd) 
Error: processing vignette 'f_tidytext_example.Rmd' failed with diagnostics:
package or namespace load failed for 'tidytext' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'f_tidytext_example.Rmd'

SUMMARY: processing the following file failed:
  'f_tidytext_example.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TextMiningGUI.Rcheck/00install.out' for details.
phyper_right: no visible global function definition for 'dhyper'
progression: no visible global function definition for 'density'
progression: no visible global function definition for 'points'
progression: no visible global function definition for 'legend'
progression: no visible global function definition for 'text'
specificities.distribution.plot: no visible global function definition
  for 'dhyper'
specificities.distribution.plot: no visible global function definition
  for 'Axis'
specificities.distribution.plot: no visible global function definition
  for 'arrows'
specificities.distribution.plot: no visible global function definition
  for 'text'
specificities.distribution.plot: no visible global function definition
  for 'title'
specificities.probabilities.vector: no visible global function
  definition for 'phyper'
Undefined global functions or variables:
  Axis arrows density dhyper legend phyper points text title
Consider adding
  importFrom("graphics", "Axis", "arrows", "legend", "points", "text",
             "title")
  importFrom("stats", "density", "dhyper", "phyper")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/textrecipes.Rcheck/00install.out' for details.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    extdata   2.9Mb
    libs      2.1Mb
Running examples in 'textreuse-Ex.R' failed
The error most likely occurred in:

> ### Name: lsh
> ### Title: Locality sensitive hashing for minhash
> ### Aliases: lsh
> 
> ### ** Examples
> 
> dir <- system.file("extdata/legal", package = "textreuse")
> minhash <- minhash_generator(200, seed = 235)
> corpus <- TextReuseCorpus(dir = dir,
+                           tokenizer = tokenize_ngrams, n = 5,
+                           minhash_func = minhash)
> buckets <- lsh(corpus, bands = 50)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: lsh ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(textreuse)
  > 
  > test_check("textreuse")
  -- 1. Error: (unknown) (@test-lsh.R#9)  ----------------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. textreuse::lsh(corpus, bands = 50)
    2. textreuse:::lsh.TextReuseCorpus(corpus, bands = 50)
    3. tibble::as_tibble(.)
   10. tidyr::gather_(., "doc", "hash", col_names)
   11. base::getExportedValue(pkg, name)
   12. base::asNamespace(ns)
   13. base::getNamespace(ns)
   14. base::loadNamespace(name)
   17. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   18. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 129 | SKIPPED: 2 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test-lsh.R#9) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'textreuse-alignment.Rmd' using rmarkdown
--- finished re-building 'textreuse-alignment.Rmd'

--- re-building 'textreuse-introduction.Rmd' using rmarkdown
--- finished re-building 'textreuse-introduction.Rmd'

--- re-building 'textreuse-minhash.Rmd' using rmarkdown
Quitting from lines 13-14 (textreuse-minhash.Rmd) 
Error: processing vignette 'textreuse-minhash.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'textreuse-minhash.Rmd'

--- re-building 'textreuse-pairwise.Rmd' using rmarkdown
--- finished re-building 'textreuse-pairwise.Rmd'

SUMMARY: processing the following file failed:
  'textreuse-minhash.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'textstem-Ex.R' failed
The error most likely occurred in:

> ### Name: lemmatize_strings
> ### Title: Lemmatize a Vector of Strings
> ### Aliases: lemmatize_strings
> 
> ### ** Examples
> 
> x <- c(
+     'the dirtier dog has eaten the pies',
+     'that shameful pooch is tricky and sneaky',
+     "He opened and then reopened the food bag",
+     'There are skies of blue and red roses too!',
+     NA,
+     "The doggies, well they aren't joyfully running.",
+     "The daddies are coming over...",
+     "This is 34.546 above"
+ )
> 
> ## Default lexicon::hash_lemmas dictionary
> lemmatize_strings(x)
[1] "the dirty dog have eat the pie"           
[2] "that shameful pooch be tricky and sneaky" 
[3] "He open and then reopen the food bag"     
[4] "There be sky of blue and red rose too!"   
[5] NA                                         
[6] "The doggy, good they aren't joyfully run."
[7] "The daddy be come over..."                
[8] "This be 34. 546 above"                    
> 
> ## Hunspell dictionary
> lemma_dictionary <- make_lemma_dictionary(x, engine = 'hunspell')
Warning: NA is replaced by empty string
> lemmatize_strings(x, dictionary = lemma_dictionary)
[1] "the dirty dog ha eat the pie"               
[2] "that shameful pooch i tricky and sneaky"    
[3] "He open and then reopen the food bag"       
[4] "There are sky of blue and re rose too!"     
[5] NA                                           
[6] "The doggy, well they aren't joyful running."
[7] "The daddy are come over..."                 
[8] "This i 34. 546 above"                       
> 
> ## Bigger data set
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    libs   3.7Mb
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > 
  > library(testthat)
  > library(tensorflow)
  > library(tfaddons)
  > library(keras)
  > library(dplyr)
  Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Execution halted
ParseTrueFX: no visible global function definition for 'read.csv'
TrueFXRef: no visible global function definition for 'download.file'
TrueFXRef: no visible global function definition for 'browseURL'
Undefined global functions or variables:
  browseURL download.file read.csv
Consider adding
  importFrom("utils", "browseURL", "download.file", "read.csv")
to your NAMESPACE file.
installed size is  8.5Mb
  sub-directories of 1Mb or more:
    data   1.1Mb
    rda    7.1Mb
Running examples in 'thectar-Ex.R' failed
The error most likely occurred in:

> ### Name: highlall
> ### Title: Highlight highest similarities overall (highlall)
> ### Aliases: highlall
> 
> ### ** Examples
> 
> ## Calculating an MDS using the package 'smacof' and showing the 25% 
> ## highest similarities
> data(SDG_coocurrence)
> SDG_coocurrence <- SDG_coocurrence[,-2] # Drop second column
> similarities <- simi(SDG_coocurrence, method = "as")
Response with only one or no mentioning. There is only one or no mentioning in the row with ID 36. 
Response with only one or no mentioning. There is only one or no mentioning in the row with ID 35. 
Response with only one or no mentioning. There is only one or no mentioning in the row with ID 32. 
Response with only one or no mentioning. There is only one or no mentioning in the row with ID 31. 
Response with only one or no mentioning. There is only one or no mentioning in the row with ID 28. 
Response with only one or no mentioning. There is only one or no mentioning in the row with ID 27. 
Response with only one or no mentioning. There is only one or no mentioning in the row with ID 12. 
> dissimilarities <- 1 - similarities
> res <- smacof::smacofSym(dissimilarities, type = "ordinal")
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: :: ... loadNamespace -> namespaceImport -> loadNamespace -> library.dynam
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/themetagenomics.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/themis.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Thinknum: no visible global function definition for 'URLencode'
Undefined global functions or variables:
  URLencode
Consider adding
  importFrom("utils", "URLencode")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/thinkr.Rcheck/00install.out' for details.
coef_traceplot: no visible global function definition for 'rainbow'
coef_traceplot: no visible global function definition for 'abline'
coef_traceplot : <anonymous>: no visible global function definition for
  'lines'
coef_traceplot: no visible global function definition for 'text'
ee.GEE.aux : <anonymous>: no visible global function definition for
  'combn'
Undefined global functions or variables:
  abline combn lines rainbow text
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "abline", "lines", "text")
  importFrom("utils", "combn")
to your NAMESPACE file.
Unavailable namespace imported from by a ':::' call: 'revdbayes'
  See the note in ?`:::` about the use of this operator.
Running examples in 'threshr-Ex.R' failed
The error most likely occurred in:

> ### Name: ithresh
> ### Title: Threshold selection in the i.i.d. case (peaks over threshold)
> ### Aliases: ithresh
> 
> ### ** Examples
> 
> # Note:
> # 1. Smoother plots result from making n larger than the default n = 1000.
> # 2. In the examples below validation thresholds rather higher than is
> #    advisable have been used, with far fewer excesses than the minimum of
> #    50 suggested by Jonathan and Ewans (2013).
> 
> ## North Sea significant wave heights, default prior -----------------------
> #' # A plot akin to the top left of Figure 7 in Northrop et al. (2017)
> #' # ... but with fewer training thresholds
> 
> u_vec_ns <- quantile(ns, probs = seq(0.1, 0.9, by = 0.1))
> ns_cv <- ithresh(data = ns, u_vec = u_vec_ns, n_v = 2)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: ithresh ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'threshr-vignette.Rmd' using rmarkdown
Quitting from lines 40-58 (threshr-vignette.Rmd) 
Error: processing vignette 'threshr-vignette.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'threshr-vignette.Rmd'

SUMMARY: processing the following file failed:
  'threshr-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
summary.tsls: no visible global function definition for 'printCoefmat'
threesls: no visible global function definition for 'cor'
threesls: no visible global function definition for 'pt'
tsls.formula: no visible global function definition for 'model.matrix'
tsls.formula: no visible global function definition for
  'model.response'
Undefined global functions or variables:
  cor model.matrix model.response printCoefmat pt
Consider adding
  importFrom("stats", "cor", "model.matrix", "model.response",
             "printCoefmat", "pt")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/thurstonianIRT.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'extending.Rmd' using rmarkdown
--- finished re-building 'extending.Rmd'

--- re-building 'invariants.Rmd' using rmarkdown
--- finished re-building 'invariants.Rmd'

--- re-building 'tibble.Rmd' using rmarkdown
--- finished re-building 'tibble.Rmd'

--- re-building 'types.Rmd' using rmarkdown
Quitting from lines 11-18 (types.Rmd) 
Error: processing vignette 'types.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'types.Rmd'

SUMMARY: processing the following file failed:
  'types.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tibbletime.Rcheck/00install.out' for details.
.LoadTickDataHK: no visible global function definition for 'read.csv'
.LoadTickDataSHSZ: no visible global function definition for 'read.csv'
DrawDown: no visible global function definition for 'na.omit'
PerformanceReport: no visible global function definition for
  'aggregate'
PerformanceReport: no visible global function definition for 'sd'
Undefined global functions or variables:
  aggregate na.omit read.csv sd
Consider adding
  importFrom("stats", "aggregate", "na.omit", "sd")
  importFrom("utils", "read.csv")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Malformed Title field: should not end in a period.
newTiddler: no visible global function definition for 'new'
twImage: no visible global function definition for 'new'
twLink: no visible global function definition for 'new'
twList: no visible global function definition for 'new'
twTable: no visible global function definition for 'new'
Undefined global functions or variables:
  new
Consider adding
  importFrom("methods", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidybayes.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyBF.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyboot.Rcheck/00install.out' for details.
Running examples in 'tidycat-Ex.R' failed
The error most likely occurred in:

> ### Name: tidy_categorical
> ### Title: Expand broom::tidy() Outputs for Categorical Parameter Estimates
> ### Aliases: tidy_categorical
> 
> ### ** Examples
> 
> # strip ordering in factors (currently ordered factor not supported)
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Error(s) in re-building vignettes:
--- re-building 'intro.Rmd' using rmarkdown
Quitting from lines 53-60 (intro.Rmd) 
Error: processing vignette 'intro.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'intro.Rmd'

SUMMARY: processing the following file failed:
  'intro.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidycensus.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'tidycode.Rmd' using rmarkdown
Quitting from lines 69-75 (tidycode.Rmd) 
Error: processing vignette 'tidycode.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'tidycode.Rmd'

SUMMARY: processing the following file failed:
  'tidycode.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'tidycomm-Ex.R' failed
The error most likely occurred in:

> ### Name: add_index
> ### Title: Add index
> ### Aliases: add_index
> 
> ### ** Examples
> 
> WoJ %>% add_index(ethical_flexibility, ethics_1, ethics_2, ethics_3, ethics_4)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: %>% ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'v01_univariate.Rmd' using rmarkdown
Quitting from lines 39-41 (v01_univariate.Rmd) 
Error: processing vignette 'v01_univariate.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'v01_univariate.Rmd'

--- re-building 'v02_bivariate.Rmd' using rmarkdown
Quitting from lines 40-42 (v02_bivariate.Rmd) 
Error: processing vignette 'v02_bivariate.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'v02_bivariate.Rmd'

--- re-building 'v03_reliability.Rmd' using rmarkdown
Quitting from lines 40-44 (v03_reliability.Rmd) 
Error: processing vignette 'v03_reliability.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'v03_reliability.Rmd'

--- re-building 'v04_icr.Rmd' using rmarkdown
Quitting from lines 37-39 (v04_icr.Rmd) 
Error: processing vignette 'v04_icr.Rmd' failed with diagnostics:
`map_df()` requires dplyr
--- failed re-building 'v04_icr.Rmd'

SUMMARY: processing the following files failed:
  'v01_univariate.Rmd' 'v02_bivariate.Rmd' 'v03_reliability.Rmd'
  'v04_icr.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidycwl.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidydice.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'benchmark.Rmd' using rmarkdown
Quitting from lines 22-60 (benchmark.Rmd) 
Error: processing vignette 'benchmark.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'benchmark.Rmd'

--- re-building 'chinese_tutorial.Rmd' using rmarkdown
--- finished re-building 'chinese_tutorial.Rmd'

--- re-building 'english_tutorial.Rmd' using rmarkdown
--- finished re-building 'english_tutorial.Rmd'

--- re-building 'example1_intro.Rmd' using rmarkdown
--- finished re-building 'example1_intro.Rmd'

--- re-building 'example2_join.Rmd' using rmarkdown
--- finished re-building 'example2_join.Rmd'

--- re-building 'example3_reshape.Rmd' using rmarkdown
Quitting from lines 18-20 (example3_reshape.Rmd) 
Error: processing vignette 'example3_reshape.Rmd' failed with diagnostics:
package or namespace load failed for 'tidyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'example3_reshape.Rmd'

--- re-building 'example4_nest.Rmd' using rmarkdown
--- finished re-building 'example4_nest.Rmd'

--- re-building 'example5_fst.Rmd' using rmarkdown
--- finished re-building 'example5_fst.Rmd'

--- re-building 'example6_dt.Rmd' using rmarkdown
--- finished re-building 'example6_dt.Rmd'

SUMMARY: processing the following files failed:
  'benchmark.Rmd' 'example3_reshape.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Introduction.Rmd' using rmarkdown
Quitting from lines 113-154 (Introduction.Rmd) 
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Introduction.Rmd'

SUMMARY: processing the following file failed:
  'Introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'tidygapminder-Ex.R' failed
The error most likely occurred in:

> ### Name: tidy_bunch
> ### Title: Tidy Gapminder indicator data sheets stored in a folder using
> ###   'tidy_indice'.
> ### Aliases: tidy_bunch
> 
> ### ** Examples
> 
> 
> folder_path <- system.file("extdata", package = "tidygapminder")
> 
> tidy_bunch(folder_path)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: tidy_bunch ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'tidygapminder.Rmd' using rmarkdown
Quitting from lines 32-44 (tidygapminder.Rmd) 
Error: processing vignette 'tidygapminder.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'tidygapminder.Rmd'

SUMMARY: processing the following file failed:
  'tidygapminder.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidygate.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidygenomics.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'tidygeocoder.Rmd' using rmarkdown
Quitting from lines 25-37 (tidygeocoder.Rmd) 
Error: processing vignette 'tidygeocoder.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'tidygeocoder.Rmd'

SUMMARY: processing the following file failed:
  'tidygeocoder.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidygeoRSS.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidygraph.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyHeatmap.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyhydat.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyjson.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidylog.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidylo.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyLPA.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyMicro.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidymodels.Rcheck/00install.out' for details.
Running examples in 'tidymv-Ex.R' failed
The error most likely occurred in:

> ### Name: create_start_event
> ### Title: Create a start event column.
> ### Aliases: create_start_event
> 
> ### ** Examples
> 
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Error(s) in re-building vignettes:
--- re-building 'plot-smooths.Rmd' using rmarkdown
Quitting from lines 13-23 (plot-smooths.Rmd) 
Error: processing vignette 'plot-smooths.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'plot-smooths.Rmd'

--- re-building 'predict-gam.Rmd' using rmarkdown
Quitting from lines 13-23 (predict-gam.Rmd) 
Error: processing vignette 'predict-gam.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'predict-gam.Rmd'

SUMMARY: processing the following files failed:
  'plot-smooths.Rmd' 'predict-gam.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidync.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidypmc.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyposterior.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidypredict.Rcheck/00install.out' for details.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc   4.4Mb
Running examples in 'tidyquant-Ex.R' failed
The error most likely occurred in:

> ### Name: coord_x_date
> ### Title: Zoom in on plot regions using date ranges or date-time ranges
> ### Aliases: coord_x_date coord_x_datetime
> 
> ### ** Examples
> 
> # Load libraries
> library(tidyquant)
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(tidyquant)
  Loading required package: lubridate
  
  Attaching package: 'lubridate'
  
  The following objects are masked from 'package:base':
  
      date, intersect, setdiff, union
  
  Loading required package: PerformanceAnalytics
  Loading required package: xts
  Loading required package: zoo
  
  Attaching package: 'zoo'
  
  The following objects are masked from 'package:base':
  
      as.Date, as.Date.numeric
  
  
  Attaching package: 'PerformanceAnalytics'
  
  The following object is masked from 'package:graphics':
  
      legend
  
  Loading required package: quantmod
  Loading required package: TTR
  Version 0.4-0 included new data defaults. See ?getSymbols.
  == Need to Learn tidyquant? ====================================================
  Business Science offers a 1-hour course - Learning Lab #9: Performance Analysis & Portfolio Optimization with tidyquant!
  </> Learn more at: https://university.business-science.io/p/learning-labs-pro </>
  > library(tidyverse)
  Error: package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyquery.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyqwi.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyREDCap.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyRSS.Rcheck/00install.out' for details.
Running 'testthat.R' [11s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(tidyrules)
  > 
  > test_check("tidyrules")
  -- 1. Error: (unknown) (@test-c5.R#25)  ----------------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. AmesHousing::make_ames
   2. base::getExportedValue(pkg, name)
   3. base::asNamespace(ns)
   4. base::getNamespace(ns)
   5. base::loadNamespace(name)
   8. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   9. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: (unknown) (@test-cubist.R#29)  ------------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. AmesHousing::make_ames
   2. base::getExportedValue(pkg, name)
   3. base::asNamespace(ns)
   4. base::getNamespace(ns)
   5. base::loadNamespace(name)
   8. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   9. base::library.dynam(lib, package, package.lib)
  
  -- 3. Error: (unknown) (@test-rpart.R#11)  -------------------------------------
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    8. dplyr::mutate_if(., is.ordered, function(x) x <- factor(x, ordered = F))
    9. base::getExportedValue(pkg, name)
   10. base::asNamespace(ns)
   11. base::getNamespace(ns)
   12. base::loadNamespace(name)
   13. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
  1. Error: (unknown) (@test-c5.R#25) 
  2. Error: (unknown) (@test-cubist.R#29) 
  3. Error: (unknown) (@test-rpart.R#11) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'tidyrules_vignette.Rmd' using rmarkdown
Quitting from lines 19-34 (tidyrules_vignette.Rmd) 
Error: processing vignette 'tidyrules_vignette.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'tidyrules_vignette.Rmd'

SUMMARY: processing the following file failed:
  'tidyrules_vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Running 'test_local.R' [0s]
  Running 'testthat.R' [10s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(tidySEM)
  > library(MplusAutomation)
  Version:  0.7-3
  We work hard to write this free software. Please help us get credit by citing: 
  
  Hallquist, M. N. & Wiley, J. F. (2018). MplusAutomation: An R Package for Facilitating Large-Scale Latent Variable Analyses in Mplus. Structural Equation Modeling, 25, 621-638. doi: 10.1080/10705511.2017.1402334.
  
  -- see citation("MplusAutomation").
  > if(mplusAvailable(TRUE) == 0){
  +   options("test_mplus" = TRUE)
  + } else {
  +   options("test_mplus" = FALSE)
  + }
  > # To run all mplus tests, run the code below once to create a file that is not
  > # tracked by git, which toggles the option to run mplus tests:
  > # writeLines('options("test_mplus" = TRUE)', con = "tests/test_local.R")
  > test_check("tidySEM")
  -- 1. Error: (unknown) (@test-syntax_same_sem_addpaths.R#3)  -------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 13 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test-syntax_same_sem_addpaths.R#3) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'Generating_syntax.Rmd' using rmarkdown
This is lavaan 0.6-7
lavaan is BETA software! Please report any bugs.
Quitting from lines 19-22 (Generating_syntax.Rmd) 
Error: processing vignette 'Generating_syntax.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Generating_syntax.Rmd'

--- re-building 'Plotting_graphs.Rmd' using rmarkdown
This is lavaan 0.6-7
lavaan is BETA software! Please report any bugs.
Quitting from lines 246-250 (Plotting_graphs.Rmd) 
Error: processing vignette 'Plotting_graphs.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Plotting_graphs.Rmd'

--- re-building 'Tabulating_results.Rmd' using rmarkdown
Quitting from lines 19-23 (Tabulating_results.Rmd) 
Error: processing vignette 'Tabulating_results.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Tabulating_results.Rmd'

--- re-building 'sem_graph.Rmd' using rmarkdown
Quitting from lines 11-26 (sem_graph.Rmd) 
Error: processing vignette 'sem_graph.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'sem_graph.Rmd'

SUMMARY: processing the following files failed:
  'Generating_syntax.Rmd' 'Plotting_graphs.Rmd'
  'Tabulating_results.Rmd' 'sem_graph.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidystats.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidytext.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidytidbits.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidytransit.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidytree.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'using_tidyusda.Rmd' using rmarkdown
Quitting from lines 72-89 (using_tidyusda.Rmd) 
Error: processing vignette 'using_tidyusda.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'using_tidyusda.Rmd'

SUMMARY: processing the following file failed:
  'using_tidyusda.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tidyverse.Rcheck/00install.out' for details.
Running 'testthat.R' [5s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(tidyxl)
  > 
  > test_check("tidyxl")
  -- 1. Error: Data validation rules are returned correctly (@test-validation.R#10
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. dplyr::arrange
   2. base::getExportedValue(pkg, name)
   3. base::asNamespace(ns)
   4. base::getNamespace(ns)
   5. base::loadNamespace(name)
   6. base::library.dynam(lib, package, package.lib)
  
  root   
  °-- 1  number 
  # A tibble: 1 x 3
    level type   token
    <int> <chr>  <chr>
  1     0 number 1    
  == testthat results  ===========================================================
  [ OK: 349 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: Data validation rules are returned correctly (@test-validation.R#10) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'data-validation-rules.Rmd' using rmarkdown
Quitting from lines 34-39 (data-validation-rules.Rmd) 
Error: processing vignette 'data-validation-rules.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'data-validation-rules.Rmd'

--- re-building 'smells.Rmd' using rmarkdown
Quitting from lines 60-71 (smells.Rmd) 
Error: processing vignette 'smells.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'smells.Rmd'

--- re-building 'tidyxl.Rmd' using rmarkdown
Quitting from lines 82-85 (tidyxl.Rmd) 
Error: processing vignette 'tidyxl.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'tidyxl.Rmd'

SUMMARY: processing the following files failed:
  'data-validation-rules.Rmd' 'smells.Rmd' 'tidyxl.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'tiff-Ex.R' failed
The error most likely occurred in:

> ### Name: readTIFF
> ### Title: Read a bitmap image stored in the TIFF format
> ### Aliases: readTIFF
> ### Keywords: IO
> 
> ### ** Examples
> 
> # read a sample file (R logo)
> img <- readTIFF(system.file("img", "Rlogo.tiff", package="tiff"))
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tiger.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tigerstats.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tigger.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tigris.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'tilemaps.Rmd' using rmarkdown
Linking to GEOS 3.8.0, GDAL 3.0.4, PROJ 6.3.1
Quitting from lines 18-22 (tilemaps.Rmd) 
Error: processing vignette 'tilemaps.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'tilemaps.Rmd'

SUMMARY: processing the following file failed:
  'tilemaps.Rmd'

Error: Vignette re-building failed.
Execution halted
'library' or 'require' call to 'shiny' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: 'ggplot2'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
timeline: no visible global function definition for 'ggplot'
timeline: no visible global function definition for 'geom_segment'
timeline: no visible global function definition for 'aes_string'
timeline: no visible global function definition for 'geom_rect'
timeline: no visible global function definition for 'geom_text'
timeline: no visible global function definition for 'theme'
timeline: no visible global function definition for 'element_blank'
timeline: no visible global function definition for 'xlab'
timeline: no visible global function definition for 'ylab'
timeline: no visible global function definition for 'xlim'
timeline: no visible global function definition for
  'scale_y_continuous'
timeline: no visible global function definition for 'geom_point'
timeline: no visible global function definition for 'scale_color_grey'
timeline: no visible global function definition for 'geom_hline'
Undefined global functions or variables:
  aes_string element_blank geom_hline geom_point geom_rect geom_segment
  geom_text ggplot scale_color_grey scale_y_continuous theme xlab xlim
  ylab
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/timelineR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/timelineS.Rcheck/00install.out' for details.
'library' or 'require' calls in package code:
  'ggplot2' 'plyr'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  'Matrix' 'lubridate' 'timeDate'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
is.Bizday: no visible global function definition for 'isWeekday'
plotCalendarHeatmap: no visible global function definition for 'ddply'
plotCalendarHeatmap: no visible global function definition for '.'
plotCalendarHeatmap: no visible binding for global variable 'year'
plotCalendarHeatmap: no visible binding for global variable 'month'
plotCalendarHeatmap: no visible binding for global variable 'week'
plotCalendarHeatmap: no visible global function definition for 'ggplot'
plotCalendarHeatmap: no visible global function definition for 'aes'
plotCalendarHeatmap: no visible binding for global variable 'monthweek'
plotCalendarHeatmap: no visible binding for global variable 'weekday'
plotCalendarHeatmap: no visible global function definition for
  'geom_tile'
plotCalendarHeatmap: no visible global function definition for
  'facet_grid'
plotCalendarHeatmap: no visible global function definition for
  'scale_fill_gradientn'
projectDate: no visible global function definition for 'holidayNYSE'
projectDate: no visible global function definition for
  'sparse.model.matrix'
Undefined global functions or variables:
  . aes ddply facet_grid geom_tile ggplot holidayNYSE isWeekday month
  monthweek scale_fill_gradientn sparse.model.matrix week weekday year
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'boot' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'boot'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
boot_autocov: no visible global function definition for 'is.ts'
boot_autocov: no visible global function definition for 'tsboot'
boot_autocov: no visible global function definition for 'quantile'
boot_autocov: no visible global function definition for 'par'
boot_autocov: no visible global function definition for 'frequency'
boot_autocov: no visible global function definition for 'polygon'
boot_autocov: no visible global function definition for 'lines'
boot_autocov: no visible global function definition for 'abline'
boot_autocov: no visible global function definition for 'acf'
boot_spec: no visible global function definition for 'is.ts'
boot_spec: no visible global function definition for 'tsboot'
boot_spec: no visible global function definition for 'spec.pgram'
boot_spec: no visible global function definition for 'quantile'
boot_spec: no visible global function definition for 'polygon'
boot_spec: no visible global function definition for 'lines'
redraw: no visible global function definition for 'spec.pgram'
statistic: no visible global function definition for 'acf'
Undefined global functions or variables:
  abline acf frequency is.ts lines par polygon quantile spec.pgram
  tsboot
Consider adding
  importFrom("graphics", "abline", "lines", "par", "polygon")
  importFrom("stats", "acf", "frequency", "is.ts", "quantile",
             "spec.pgram")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/timetk.Rcheck/00install.out' for details.
author.search: no visible binding for global variable 'na.omit'
reference.list: no visible global function definition for 'na.omit'
Undefined global functions or variables:
  na.omit
Consider adding
  importFrom("stats", "na.omit")
to your NAMESPACE file.
drawGraph: no visible global function definition for 'pdf'
drawGraph: no visible global function definition for 'par'
drawGraph: no visible global function definition for 'segments'
drawGraph: no visible global function definition for 'lines'
drawGraph: no visible global function definition for 'text'
drawGraph: no visible global function definition for 'dev.off'
drugRank: no visible global function definition for 'aggregate'
floating2: no visible global function definition for 'cor'
timma: no visible global function definition for 'median'
timma: no visible global function definition for 'write.table'
Undefined global functions or variables:
  aggregate cor dev.off lines median par pdf segments text write.table
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("graphics", "lines", "par", "segments", "text")
  importFrom("stats", "aggregate", "cor", "median")
  importFrom("utils", "write.table")
to your NAMESPACE file.
tipom.car: no visible global function definition for 'abline'
tipom.car: no visible global function definition for 'axis'
tipom.heat: no visible global function definition for 'image'
tipom.heat: no visible global function definition for 'gray'
tipom.lw: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline axis gray image
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "abline", "axis", "image")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TITAN2.Rcheck/00install.out' for details.
'library' or 'require' calls to packages already attached by Depends:
  'MASS' 'boot' 'lattice' 'splines' 'tcltk'
  Please remove these calls from your code.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TLBC.Rcheck/00install.out' for details.
FLXmclust.Density: no visible global function definition for 'dmvnorm'
FLXmclust.Estimate: no visible global function definition for 'flexmix'
FLXmclust.Estimate: no visible global function definition for
  'FLXmclust'
coefmclust: no visible global function definition for 'parameters'
flexmix.Density: no visible global function definition for
  'model.matrix'
flexmix.Density: no visible global function definition for
  'model.response'
flexmix.Density: no visible global function definition for
  'model.frame'
flexmix.Density: no visible global function definition for 'dnorm'
flexmix.Density: no visible global function definition for 'dpois'
flexmix.Density: no visible global function definition for 'dbinom'
flexmix.Estimate: no visible global function definition for 'flexmix'
flexmix.Estimate: no visible global function definition for 'FLXglm'
tleplot,TLE-data.frame: no visible global function definition for
  'legend'
Undefined global functions or variables:
  FLXglm FLXmclust dbinom dmvnorm dnorm dpois flexmix legend
  model.frame model.matrix model.response parameters
Consider adding
  importFrom("graphics", "legend")
  importFrom("stats", "dbinom", "dnorm", "dpois", "model.frame",
             "model.matrix", "model.response")
to your NAMESPACE file.
'library' or 'require' call to 'mvtnorm' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'mvtnorm'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
EMN: no visible global function definition for 'dmvnorm'
EMN: no visible global function definition for 'pmvnorm'
EMT: no visible global function definition for 'GenzBretz'
EMT: no visible global function definition for 'dmvt'
EMT: no visible global function definition for 'pmvt'
MomemNT: no visible global function definition for 'pnorm'
MomemNT: no visible global function definition for 'dnorm'
MomemNT: no visible global function definition for 'pmvnorm'
MomemNT: no visible global function definition for 'dmvnorm'
TT.moment: no visible global function definition for 'GenzBretz'
TT.moment: no visible global function definition for 'pmvt'
TT.moment: no visible global function definition for 'dt'
TT.moment: no visible global function definition for 'pt'
TT.moment: no visible global function definition for 'dmvt'
cdfNI: no visible global function definition for 'pnorm'
cdfNI: no visible global function definition for 'pt'
inits: no visible global function definition for 'lm'
Undefined global functions or variables:
  GenzBretz dmvnorm dmvt dnorm dt lm pmvnorm pmvt pnorm pt
Consider adding
  importFrom("stats", "dnorm", "dt", "lm", "pnorm", "pt")
to your NAMESPACE file.
installed size is 23.1Mb
  sub-directories of 1Mb or more:
    examples  19.6Mb
    include    2.9Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Tmisc.Rcheck/00install.out' for details.
extractContentDOM: no visible global function definition for
  'capture.output'
extractHTMLStrip: no visible global function definition for
  'capture.output'
Undefined global functions or variables:
  capture.output
Consider adding
  importFrom("utils", "capture.output")
to your NAMESPACE file.
Packages suggested but not available for checking:
  'Rcampdf', 'Rpoppler', 'tm.lexicon.GeneralInquirer'
Package unavailable to check Rd xrefs: 'Rpoppler'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/togglr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/toolmaRk.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tools4uplift.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ToolsForCoDa.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'corpus.JSS.papers'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/topoDistance.Rcheck/00install.out' for details.
Loading this package had a fatal error status code 1
Loading log:
No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph'
Error: package or namespace load failed for 'topologyGSA' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   4.7Mb
Malformed Description field: should contain one or more complete sentences.
Tosls.formula: no visible global function definition for 'model.matrix'
Tosls.formula: no visible global function definition for
  'model.response'
summary: no visible global function definition for 'coef'
summary: no visible global function definition for 'pt'
Undefined global functions or variables:
  coef model.matrix model.response pt
Consider adding
  importFrom("stats", "coef", "model.matrix", "model.response", "pt")
to your NAMESPACE file.
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    data   4.7Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/toxEval.Rcheck/00install.out' for details.
ConfA: no visible global function definition for 'qf'
EstM2Sn: no visible global function definition for 'nlm'
EstM2Sn: no visible global function definition for 'qnorm'
TV.model: no visible global function definition for 'dev.new'
TV.model: no visible global function definition for 'points'
betaBino: no visible global function definition for 'pbinom'
doseD: no visible global function definition for 'lm'
doseD: no visible global function definition for 'dev.new'
doseD: no visible global function definition for 'par'
doseD: no visible global function definition for 'axTicks'
doseD: no visible global function definition for 'axis'
doseD: no visible global function definition for 'lines'
doseD: no visible global function definition for 'abline'
doseD: no visible global function definition for 'legend'
setD: no visible global function definition for 'dev.new'
setD: no visible global function definition for 'par'
setD: no visible global function definition for 'pbinom'
setD: no visible global function definition for 'abline'
setD: no visible global function definition for 'axis'
setD: no visible global function definition for 'rect'
setD: no visible global function definition for 'lines'
setD: no visible global function definition for 'text'
setD: no visible global function definition for 'axTicks'
setD: no visible global function definition for 'legend'
spoD : spoD_A: no visible global function definition for 'chisq.test'
Undefined global functions or variables:
  abline axTicks axis chisq.test dev.new legend lines lm nlm par pbinom
  points qf qnorm rect text
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "abline", "axTicks", "axis", "legend", "lines",
             "par", "points", "rect", "text")
  importFrom("stats", "chisq.test", "lm", "nlm", "pbinom", "qf", "qnorm")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TPEA.Rcheck/00install.out' for details.
align1d : obj: no visible global function definition for 'dist'
align2d : obj: no visible global function definition for 'dist'
align2d : pen: no visible global function definition for 'dist'
align2d: no visible global function definition for 'dist'
sumt: no visible global function definition for 'optim'
tpe1d: no visible global function definition for 'hclust'
tpe2d: no visible global function definition for 'hclust'
tpe2d: no visible global function definition for 'cmdscale'
Undefined global functions or variables:
  cmdscale dist hclust optim
Consider adding
  importFrom("stats", "cmdscale", "dist", "hclust", "optim")
to your NAMESPACE file.
File 'tpr/libs/i386/tpr.dll':
  Found '_ZSt4cerr', possibly from 'std::cerr' (C++)
    Object: 'utils.o'
File 'tpr/libs/x64/tpr.dll':
  Found '_ZSt4cerr', possibly from 'std::cerr' (C++)
    Object: 'utils.o'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Error(s) in re-building vignettes:
--- re-building 'z1_install.Rmd' using rmarkdown
--- finished re-building 'z1_install.Rmd'

--- re-building 'z2_build.Rmd' using rmarkdown

Attaching package: 'lubridate'

The following objects are masked from 'package:base':

    date, intersect, setdiff, union

Quitting from lines 31-35 (z2_build.Rmd) 
Error: processing vignette 'z2_build.Rmd' failed with diagnostics:
arguments imply differing number of rows: 0, 1
--- failed re-building 'z2_build.Rmd'

--- re-building 'z3_manipulate.Rmd' using rmarkdown
--- finished re-building 'z3_manipulate.Rmd'

SUMMARY: processing the following file failed:
  'z2_build.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/trackeRapp.Rcheck/00install.out' for details.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   2.4Mb
    doc    2.7Mb
Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(tractor.base)
  > 
  > test_check("tractor.base")
  -- 1. Failure: we can read and write NIfTI-1 files (@test-05-files.R#49)  ------
  image$setSource(NULL)$serialise() not equal to rereadImage$setSource(NULL)$serialise().
  Component "origin": Mean relative difference: 0.973191
  Component "xform": Mean relative difference: 0.973191
  
  -- 2. Failure: we can read ANALYZE files (@test-05-files.R#66)  ----------------
  image$getOrigin() not equal to c(49, 39, 23).
  3/3 mismatches (average diff: 37)
  [1] 0 - 49 == -49
  [2] 0 - 39 == -39
  [3] 0 - 23 == -23
  
  == testthat results  ===========================================================
  [ OK: 114 | SKIPPED: 2 | WARNINGS: 0 | FAILED: 2 ]
  1. Failure: we can read and write NIfTI-1 files (@test-05-files.R#49) 
  2. Failure: we can read ANALYZE files (@test-05-files.R#66) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TrafficBDE.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/traineR.Rcheck/00install.out' for details.
Running 'spelling.R' [0s]
  Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(traipse)
  > 
  > test_check("traipse")
  -- 1. Error: angle works (@test-angle.R#9)  ------------------------------------
  package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
   DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
   1. base::library(dplyr)
   2. base::tryCatch(...)
   3. base:::tryCatchList(expr, classes, parentenv, handlers)
   4. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. value[[3L]](cond)
  
  == testthat results  ===========================================================
  [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: angle works (@test-angle.R#9) 
  
  Error: testthat unit tests failed
  Execution halted
Package suggested but not available for checking: 'taxidata'
installed size is 21.0Mb
  sub-directories of 1Mb or more:
    libs  20.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tramnet.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
microsoftTranslate: no visible global function definition for
  'URLencode'
Undefined global functions or variables:
  URLencode
Consider adding
  importFrom("utils", "URLencode")
to your NAMESPACE file.
BugReports field is not a suitable URL but appears to contain an email address
  not specified by mailto: nor contained in < >
   use the Contact field instead
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/transmem.Rcheck/00install.out' for details.
Running examples in 'transplantr-Ex.R' failed
The error most likely occurred in:

> ### Name: epts
> ### Title: Estimated Post-Transplant Survival Score (EPTS)
> ### Aliases: epts
> 
> ### ** Examples
> 
> epts(age = 23.5838467, dm = 0, prev_tx = 1, dx = 5.0814511)
Error: The dplyr package is needed for this function to work. Please install it.
Execution halted
Running 'spelling.R' [0s]
  Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(transplantr)
  > 
  > test_check("transplantr")
  -- 1. Error: KDPI is correct (@test_kri.R#34)  ---------------------------------
  The dplyr package is needed for this function to work. Please install it.
  Backtrace:
   1. testthat::expect_equal(...)
   4. transplantr::kdpi(...)
   5. transplantr::kdpi_lookup(kdri, scaling = 1)
  
  -- 2. Error: EPTS percentile is correct (@test_kri.R#51)  ----------------------
  The dplyr package is needed for this function to work. Please install it.
  Backtrace:
   1. testthat::expect_equal(...)
   4. transplantr::epts(age = 23.5838467, dm = 0, prev_tx = 1, dx = 5.0814511)
   5. transplantr::epts_lookup(raw)
  
  == testthat results  ===========================================================
  [ OK: 69 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: KDPI is correct (@test_kri.R#34) 
  2. Error: EPTS percentile is correct (@test_kri.R#51) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'egfr.Rmd' using rmarkdown
Quitting from lines 32-34 (egfr.Rmd) 
Error: processing vignette 'egfr.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'egfr.Rmd'

--- re-building 'hla_mismatch_grade.Rmd' using rmarkdown
Quitting from lines 31-34 (hla_mismatch_grade.Rmd) 
Error: processing vignette 'hla_mismatch_grade.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'hla_mismatch_grade.Rmd'

--- re-building 'kidney_risk_scores.Rmd' using rmarkdown
Quitting from lines 37-39 (kidney_risk_scores.Rmd) 
Error: processing vignette 'kidney_risk_scores.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'kidney_risk_scores.Rmd'

--- re-building 'liver_recipient_scoring.Rmd' using rmarkdown
Quitting from lines 34-36 (liver_recipient_scoring.Rmd) 
Error: processing vignette 'liver_recipient_scoring.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'liver_recipient_scoring.Rmd'

SUMMARY: processing the following files failed:
  'egfr.Rmd' 'hla_mismatch_grade.Rmd' 'kidney_risk_scores.Rmd'
  'liver_recipient_scoring.Rmd'

Error: Vignette re-building failed.
Execution halted
rtrapezoid: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Package suggested but not available for checking: 'TreeDistData'
Error(s) in re-building vignettes:
--- re-building 'treefit.Rmd' using rmarkdown
--- finished re-building 'treefit.Rmd'

--- re-building 'working-with-seurat.Rmd' using rmarkdown
trying URL 'https://zenodo.org/record/1443566/files/real/gold/myoblast-differentiation_trapnell.rds?download=1'
Content type 'application/octet-stream' length 6299496 bytes (6.0 MB)
==================================================
downloaded 6.0 MB

Quitting from lines 104-107 (working-with-seurat.Rmd) 
Error: processing vignette 'working-with-seurat.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'working-with-seurat.Rmd'

SUMMARY: processing the following file failed:
  'working-with-seurat.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/treeheatr.Rcheck/00install.out' for details.
Build_JTree: no visible global function definition for 'flush.console'
Run_JTree: no visible global function definition for 'cov2cor'
Undefined global functions or variables:
  cov2cor flush.console
Consider adding
  importFrom("stats", "cov2cor")
  importFrom("utils", "flush.console")
to your NAMESPACE file.
LikAge: no visible global function definition for 'read.table'
bd.ME.optim: no visible global function definition for 'optim'
bd.ME.optim.rho: no visible global function definition for 'optim'
bd.ME.optim.rho.all: no visible global function definition for 'optim'
bd.MEyule.optim: no visible global function definition for 'optimize'
bd.MEyule.optim: no visible global function definition for 'optim'
bd.age.optim.matlab: no visible global function definition for
  'read.table'
bd.groups.conf: no visible global function definition for 'uniroot'
bd.shifts.plot: no visible global function definition for 'lines'
bdsky.stt.optim: no visible global function definition for 'optim'
create.mat: no visible global function definition for 'write.table'
Undefined global functions or variables:
  lines optim optimize read.table uniroot write.table
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "optim", "optimize", "uniroot")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
plot.treeperm: no visible global function definition for 'hist'
plot.treeperm: no visible global function definition for 'points'
plot.treeperm: no visible global function definition for 'text'
treeperm.formula: no visible global function definition for
  'model.frame'
treeperm.formula: no visible global function definition for
  'model.response'
Undefined global functions or variables:
  hist model.frame model.response points text
Consider adding
  importFrom("graphics", "hist", "points", "text")
  importFrom("stats", "model.frame", "model.response")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/treespace.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'structuredCoalescent.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Quitting from lines 64-65 (structuredCoalescent.Rmd) 
Error: processing vignette 'structuredCoalescent.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'structuredCoalescent.Rmd'

SUMMARY: processing the following file failed:
  'structuredCoalescent.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/trelliscopejs.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/trelloR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/trendyy.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/trialr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tribe.Rcheck/00install.out' for details.
Package vignette with placeholder title 'Vignette Title':
  'trimr-vignette.Rmd'
cinbag: no visible global function definition for 'var'
trimTrees: no visible global function definition for 'predict'
Undefined global functions or variables:
  predict var
Consider adding
  importFrom("stats", "predict", "var")
to your NAMESPACE file.
'library' or 'require' calls to packages already attached by Depends:
  'gtools' 'mgcv'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'gtools' 'mgcv' 'msm'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
HtoGp: no visible global function definition for 'odd'
HtoGp: no visible global function definition for 'even'
plot.pirls.gam: no visible global function definition for 'par'
plot.pirls.gam: no visible global function definition for 'title'
plot.pirls.gam: no visible global function definition for 'lines'
plot.pirls.gam: no visible global function definition for 'rug'
plot.pirls.gam: no visible global function definition for 'mtext'
test.trioGxE: no visible global function definition for 'write.table'
trioGxE: no visible global function definition for 'quantile'
trioGxE: no visible global function definition for 'qtnorm'
trioplot: no visible global function definition for 'quantile'
trioplot: no visible global function definition for 'formula'
trioplot: no visible global function definition for 'gam'
trioplot: no visible global function definition for 'binomial'
Undefined global functions or variables:
  binomial even formula gam lines mtext odd par qtnorm quantile rug
  title write.table
Consider adding
  importFrom("graphics", "lines", "mtext", "par", "rug", "title")
  importFrom("stats", "binomial", "formula", "quantile")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Running 'spelling.R' [0s]
  Running 'testthat.R' [21s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(trip)
  > 
  > test_check("trip")
  
  Longitudes contain values greater than 180, 
  
  
  
  
   Data fully validated: returning object of class  trip 
  -- 1. Error: raw data input works (@test-trip.R#100)  --------------------------
  error in evaluating the argument 'obj' in selecting a method for function 'trip': DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. testthat::expect_that(...)
   14. base::.handleSimpleError(...)
   15. base:::h(simpleError(msg, call))
  
  == testthat results  ===========================================================
  [ OK: 120 | SKIPPED: 0 | WARNINGS: 12 | FAILED: 1 ]
  1. Error: raw data input works (@test-trip.R#100) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'Multiple_model_calculation_of_trophic_position_in_R.Rmd' using rmarkdown
Warning: Removed 1 rows containing missing values (geom_pointrange).
Warning: Removed 1 rows containing missing values (geom_pointrange).
--- finished re-building 'Multiple_model_calculation_of_trophic_position_in_R.Rmd'

--- re-building 'Multiple_species_calculation_of_trophic_position_in_R.Rmd' using rmarkdown
Quitting from lines 109-112 (Multiple_species_calculation_of_trophic_position_in_R.Rmd) 
Error: processing vignette 'Multiple_species_calculation_of_trophic_position_in_R.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Multiple_species_calculation_of_trophic_position_in_R.Rmd'

--- re-building 'Short_guide_to_tRophicPosition.Rmd' using rmarkdown
--- finished re-building 'Short_guide_to_tRophicPosition.Rmd'

SUMMARY: processing the following file failed:
  'Multiple_species_calculation_of_trophic_position_in_R.Rmd'

Error: Vignette re-building failed.
Execution halted
Malformed Title field: should not end in a period.
DrawMargin: no visible global function definition for 'qnorm'
DrawProbability: no visible global function definition for 'pnorm'
Factor: no visible global function definition for 'new'
Gaussian: no visible global function definition for 'new'
LikelihoodFactor: no visible global function definition for 'new'
Parameters: no visible global function definition for 'new'
Player: no visible global function definition for 'new'
PriorFactor: no visible global function definition for 'new'
SumFactor: no visible global function definition for 'new'
TruncateFactor: no visible global function definition for 'new'
Variable: no visible global function definition for 'new'
Vdraw: no visible global function definition for 'dnorm'
Vdraw: no visible global function definition for 'pnorm'
Vwin: no visible global function definition for 'dnorm'
Vwin: no visible global function definition for 'pnorm'
Wdraw: no visible global function definition for 'dnorm'
Wdraw: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  dnorm new pnorm qnorm
Consider adding
  importFrom("methods", "new")
  importFrom("stats", "dnorm", "pnorm", "qnorm")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'MASS'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
cdens: no visible global function definition for 'head'
dplot: no visible global function definition for 'knots'
dplot: no visible global function definition for 'median'
dplot: no visible global function definition for 'par'
dplot: no visible global function definition for 'plot.stepfun'
dplot: no visible global function definition for 'abline'
edf: no visible global function definition for 'approxfun'
mctest : rdist: no visible global function definition for 'runif'
mctest : S: no visible global function definition for 'optim'
qplot: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline approxfun head knots median optim par plot.stepfun runif
Consider adding
  importFrom("graphics", "abline", "par")
  importFrom("stats", "approxfun", "knots", "median", "optim",
             "plot.stepfun", "runif")
  importFrom("utils", "head")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/trundler.Rcheck/00install.out' for details.
Running examples in 'tsbox-Ex.R' failed
The error most likely occurred in:

> ### Name: ts_ts
> ### Title: Convert Everything to Everything
> ### Aliases: ts_ts ts_data.frame ts_df ts_data.table ts_dt ts_tbl
> ###   ts_tibbletime ts_timeSeries ts_tis ts_irts ts_tsibble ts_tslist
> ###   ts_xts ts_zoo
> 
> ### ** Examples
> 
> 
> x.ts <- ts_c(mdeaths, fdeaths)
> head(x.ts)
     mdeaths fdeaths
[1,]    2134     901
[2,]    1863     689
[3,]    1877     827
[4,]    1877     677
[5,]    1492     522
[6,]    1249     406
> head(ts_df(x.ts))
       id       time value
1 mdeaths 1974-01-01  2134
2 mdeaths 1974-02-01  1863
3 mdeaths 1974-03-01  1877
4 mdeaths 1974-04-01  1877
5 mdeaths 1974-05-01  1492
6 mdeaths 1974-06-01  1249
> 
> suppressMessages(library(dplyr))
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
tfDetails: no visible global function definition for 'start'
tfDetails: no visible global function definition for 'end'
Undefined global functions or variables:
  end start
Consider adding
  importFrom("stats", "end", "start")
to your NAMESPACE file.
Qhat: no visible global function definition for 'pnorm'
plrt: no visible global function definition for 'uniroot'
plrt: no visible global function definition for 'optimize'
simulatedata: no visible global function definition for 'rnorm'
tsc.test: no visible global function definition for 'shapiro.test'
tsc.test: no visible global function definition for 'p.adjust'
tsc.test: no visible global function definition for 'glm'
tsc.test : f: no visible global function definition for 'pnorm'
tsc.test: no visible global function definition for 'uniroot'
tsc.test: no visible global function definition for 'optimize'
variance: no visible global function definition for 'density'
variance: no visible global function definition for 'ecdf'
Undefined global functions or variables:
  density ecdf glm optimize p.adjust pnorm rnorm shapiro.test uniroot
Consider adding
  importFrom("stats", "density", "ecdf", "glm", "optimize", "p.adjust",
             "pnorm", "rnorm", "shapiro.test", "uniroot")
to your NAMESPACE file.
vintageMap: no visible global function definition for 'read.table'
TSget,character-TSfameLocalConnection: no visible global function
  definition for 'as.ts'
TSget,character-TSfameLocalConnection: no visible global function
  definition for 'zoo'
TSget,character-TSfameLocalConnection: no visible global function
  definition for 'frequency'
TSget,character-TSfameServerConnection: no visible global function
  definition for 'as.ts'
TSget,character-TSfameServerConnection: no visible global function
  definition for 'zoo'
TSget,character-TSfameServerConnection: no visible global function
  definition for 'frequency'
Undefined global functions or variables:
  as.ts frequency read.table zoo
Consider adding
  importFrom("stats", "as.ts", "frequency")
  importFrom("utils", "read.table")
to your NAMESPACE file.
DstandardizedLoadings.TSFmodel: no visible global function definition
  for 'cov'
FAfitStats.TSFmodel: no visible global function definition for 'cov'
FAfitStats.default: no visible global function definition for 'cor'
FAfitStats.default: no visible global function definition for
  'factanal'
FAfitStats.default: no visible global function definition for 'pchisq'
FAmodelFitStats: no visible global function definition for 'pchisq'
checkResiduals.TSFmodel: no visible global function definition for
  'cov'
distribution.factorsEstEval: no visible global function definition for
  'par'
distribution.factorsEstEval: no visible binding for global variable
  'par'
distribution.factorsEstEval: no visible global function definition for
  'density'
distribution.factorsEstEval: no visible global function definition for
  'matplot'
distribution.factorsEstEval: no visible global function definition for
  'title'
summary.TSFmodel: no visible global function definition for 'start'
summary.TSFmodel: no visible global function definition for 'end'
Undefined global functions or variables:
  cor cov density end factanal matplot par pchisq start title
Consider adding
  importFrom("graphics", "matplot", "par", "title")
  importFrom("stats", "cor", "cov", "density", "end", "factanal",
             "pchisq", "start")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'tsfeatures.Rmd' using rmarkdown
Quitting from lines 380-384 (tsfeatures.Rmd) 
Error: processing vignette 'tsfeatures.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'tsfeatures.Rmd'

SUMMARY: processing the following file failed:
  'tsfeatures.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'tsibbledata-Ex.R' failed
The error most likely occurred in:

> ### Name: PBS
> ### Title: Monthly Medicare Australia prescription data
> ### Aliases: PBS
> ### Keywords: datasets
> 
> ### ** Examples
> 
> library(tsibble)
Error: package or namespace load failed for 'tsibble' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tsibble.Rcheck/00install.out' for details.
Func.SAX: no visible global function definition for 'sd'
Func.SAX: no visible global function definition for 'qnorm'
Func.matrix: no visible global function definition for 'qnorm'
Func.motif: no visible global function definition for 'sd'
Func.motif: no visible global function definition for 'na.omit'
Func.motif: no visible global function definition for 'combn'
Func.motif.multivariate: no visible global function definition for
  'txtProgressBar'
Func.motif.multivariate: no visible global function definition for
  'setTxtProgressBar'
Undefined global functions or variables:
  combn na.omit qnorm sd setTxtProgressBar txtProgressBar
Consider adding
  importFrom("stats", "na.omit", "qnorm", "sd")
  importFrom("utils", "combn", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
dLag : dlag.f: no visible global function definition for
  'complete.cases'
distmat: no visible global function definition for 'dist'
fitCity: no visible global function definition for 'glm.control'
fitCity: no visible global function definition for 'terms'
ldmvnorm: no visible global function definition for 'mahalanobis'
lspline: no visible global function definition for 'quantile'
plot.tsdecomp: no visible global function definition for 'par'
setupFormula: no visible global function definition for 'as.formula'
spatialgibbs: no visible global function definition for 'rnorm'
spatialgibbs: no visible global function definition for 'rgamma'
spatialgibbs: no visible global function definition for 'runif'
tsdecomp: no visible global function definition for 'fft'
Undefined global functions or variables:
  as.formula complete.cases dist fft glm.control mahalanobis par
  quantile rgamma rnorm runif terms
Consider adding
  importFrom("graphics", "par")
  importFrom("stats", "as.formula", "complete.cases", "dist", "fft",
             "glm.control", "mahalanobis", "quantile", "rgamma", "rnorm",
             "runif", "terms")
to your NAMESPACE file.
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    data   4.6Mb
    libs   2.3Mb
GNU make is a SystemRequirements.
Malformed Title field: should not end in a period.
covTranspose11: warning in glasso(sc, 2 * rhoc/n, wi.init = gc$wi,
  w.init = gc$w, maxit = maxit.glasso, thr = thr.glasso, penalize.diag
  = pen.diag): partial argument match of 'penalize.diag' to
  'penalize.diagonal'
covTranspose11: warning in glasso(sr, 2 * rhor/p, wi.init = gr$wi,
  w.init = gr$w, maxit = maxit.glasso, thr = thr.glasso, penalize.diag
  = pen.diag): partial argument match of 'penalize.diag' to
  'penalize.diagonal'
.help.ESS: no visible global function definition for 'index.search'
TransSphere : ttin: no visible global function definition for 't.test'
TransSphere: no visible global function definition for 'sd'
TransSphere: no visible global function definition for 'quantile'
TransSphere: no visible global function definition for 'pt'
Undefined global functions or variables:
  index.search pt quantile sd t.test
Consider adding
  importFrom("stats", "pt", "quantile", "sd", "t.test")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TSS.RESTREND.Rcheck/00install.out' for details.
Running examples in 'TSstudio-Ex.R' failed
The error most likely occurred in:

> ### Name: Coffee_Prices
> ### Title: Coffee Prices: Robusta and Arabica
> ### Aliases: Coffee_Prices
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ts_plot(Coffee_Prices)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: ts_plot ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Plotting_Time_Series.Rmd' using rmarkdown
Quitting from lines 39-44 (Plotting_Time_Series.Rmd) 
Error: processing vignette 'Plotting_Time_Series.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'Plotting_Time_Series.Rmd'

SUMMARY: processing the following file failed:
  'Plotting_Time_Series.Rmd'

Error: Vignette re-building failed.
Execution halted
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  src/Makefile.win
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
TT.GS : TT.GS.sp: no visible global function definition for 'qt'
TT.GS : TT.GS.sp: no visible global function definition for 'runif'
TT.GS : TT.GS.sp: no visible global function definition for 'pt'
TT.moment: no visible global function definition for 'dt'
TT.moment: no visible global function definition for 'pt'
Undefined global functions or variables:
  dt pt qt runif
Consider adding
  importFrom("stats", "dt", "pt", "qt", "runif")
to your NAMESPACE file.
.saveDevice: no visible global function definition for 'dev.off'
Undefined global functions or variables:
  dev.off
Consider adding
  importFrom("grDevices", "dev.off")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
ttwa: no visible global function definition for 'aggregate'
ttwa: no visible global function definition for 'txtProgressBar'
ttwa: no visible global function definition for 'setTxtProgressBar'
Undefined global functions or variables:
  aggregate setTxtProgressBar txtProgressBar
Consider adding
  importFrom("stats", "aggregate")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tuber.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TukeyC.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tuneRanger.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tune.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/turfR.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/Tushare.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'introduction.Rmd' using rmarkdown
Quitting from lines 54-62 (introduction.Rmd) 
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'introduction.Rmd'

SUMMARY: processing the following file failed:
  'introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/tweet2r.Rcheck/00install.out' for details.
Package in Depends field not imported from: 'tcltk'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/TwitterAutomatedTrading.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/twn.Rcheck/00install.out' for details.
TwoCop: no visible global function definition for 'quantile'
Undefined global functions or variables:
  quantile
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(TwoRegression)
  package 'TwoRegression' was built under R version 3.4.3
  > 
  > test_check("TwoRegression")
  -- 1. Error: Master function successfully reads in data (@test-IMU_master_functi
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. TwoRegression::hibbing18_twoReg_process(...)
    2. TwoRegression::read_IMU(IMU, verbose = verbose)
    3. TwoRegression:::imu_collapse(AG, meta$block_size, verbose = verbose)
   11. dplyr::group_by_(., ~epoch)
   12. base::getExportedValue(pkg, name)
   13. base::asNamespace(ns)
   14. base::getNamespace(ns)
   15. base::loadNamespace(name)
   16. base::library.dynam(lib, package, package.lib)
  
  -- 2. Error: Data frame names are outputted as expected (@test-IMU_master_functi
  DLL 'dplyr' not found: maybe not installed for this architecture?
  Backtrace:
    1. TwoRegression::hibbing18_twoReg_process(...)
    2. TwoRegression::read_IMU(IMU, verbose = verbose)
    3. TwoRegression:::imu_collapse(AG, meta$block_size, verbose = verbose)
   11. dplyr::group_by_(., ~epoch)
   12. base::getExportedValue(pkg, name)
   13. base::asNamespace(ns)
   14. base::getNamespace(ns)
   15. base::loadNamespace(name)
   16. base::library.dynam(lib, package, package.lib)
  
  == testthat results  ===========================================================
  [ OK: 15 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: Master function successfully reads in data (@test-IMU_master_function.R#42) 
  2. Error: Data frame names are outputted as expected (@test-IMU_master_function.R#55) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'TwoRegression.Rmd' using rmarkdown
Quitting from lines 40-54 (TwoRegression.Rmd) 
Error: processing vignette 'TwoRegression.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'TwoRegression.Rmd'

SUMMARY: processing the following file failed:
  'TwoRegression.Rmd'

Error: Vignette re-building failed.
Execution halted
Crm: no visible global function definition for 'integrate'
Crm : <anonymous>: no visible global function definition for
  'integrate'
Crm: no visible global function definition for 'optimize'
ail1: no visible global function definition for 'uniroot'
ail2 : fu : <anonymous>: no visible global function definition for
  'integrate'
ail2: no visible global function definition for 'uniroot'
aip : fu : <anonymous>: no visible global function definition for
  'integrate'
aip: no visible global function definition for 'uniroot'
ait1: no visible global function definition for 'uniroot'
ait2 : fu : <anonymous>: no visible global function definition for
  'integrate'
ait2: no visible global function definition for 'uniroot'
sim3p3: no visible global function definition for 'rbinom'
simCrm: no visible global function definition for 'rbinom'
simCrm: no visible global function definition for 'palette'
simCrm: no visible global function definition for 'gray'
simCrm: no visible global function definition for 'abline'
simCrm: no visible global function definition for 'lines'
ssim3p3: no visible global function definition for 'txtProgressBar'
ssim3p3: no visible global function definition for 'setTxtProgressBar'
ssimCrm: no visible global function definition for 'txtProgressBar'
ssimCrm: no visible global function definition for 'setTxtProgressBar'
Undefined global functions or variables:
  abline gray integrate lines optimize palette rbinom setTxtProgressBar
  txtProgressBar uniroot
Consider adding
  importFrom("grDevices", "gray", "palette")
  importFrom("graphics", "abline", "lines")
  importFrom("stats", "integrate", "optimize", "rbinom", "uniroot")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    doc     6.5Mb
    ubinc   2.1Mb
rmd2pdf: no visible global function definition for 'tail'
rnw2pdf: no visible global function definition for 'tail'
Undefined global functions or variables:
  tail
Consider adding
  importFrom("utils", "tail")
to your NAMESPACE file.
GNU make is a SystemRequirements.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/UCSCXenaShiny.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/UCSCXenaTools.Rcheck/00install.out' for details.
installed size is 14.3Mb
  sub-directories of 1Mb or more:
    doc         6.9Mb
    dummydata   1.4Mb
    libs        4.7Mb
Running examples in 'ufs-Ex.R' failed
The error most likely occurred in:

> ### Name: multiVarFreq
> ### Title: Generate a table collapsing frequencies of multiple variables
> ### Aliases: multiVarFreq
> ### Keywords: utilities
> 
> ### ** Examples
> 
> 
> multiVarFreq(mtcars, c('gear', 'carb'));
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: multiVarFreq ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
installed size is 83.0Mb
  sub-directories of 1Mb or more:
    data      2.0Mb
    extdata   2.3Mb
    gdal      3.8Mb
    libs     69.6Mb
    proj      5.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ukbtools.Rcheck/00install.out' for details.
Running examples in 'ukgasapi-Ex.R' failed
The error most likely occurred in:

> ### Name: dataItemExplorer
> ### Title: Data Item Explorer API
> ### Aliases: dataItemExplorer
> 
> ### ** Examples
> 
> # Specify the data item(s) to enquire from API
> dataitems <- c("Storage Injection, Actual",
+                "Storage Withdrawal, Actual")
> 
> # Initialise API (requires internet connection for this step)
> response <- dataItemExplorer(dataitems,
+                              fromdate = "2013-10-01",
+                              todate="2015-09-30")
*   Trying 104.19.188.23...
* Connected to marketinformation.natgrid.co.uk (104.19.188.23) port 443 (#0)
* successfully set certificate verify locations:
*   CAfile: D:/temp/RtmpArtiag/RLIBS_1810445f06ff4/RCurl/etc/ca-bundle.crt
  CApath: none
* error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
* Closing connection 0
Error in function (type, msg, asError = TRUE)  : 
  error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Calls: dataItemExplorer -> <Anonymous> -> <Anonymous> -> fun
Execution halted
Error(s) in re-building vignettes:
--- re-building 'vignette.Rmd' using rmarkdown
*   Trying 104.19.188.23...
* Connected to marketinformation.natgrid.co.uk (104.19.188.23) port 443 (#0)
* successfully set certificate verify locations:
*   CAfile: D:/temp/RtmpArtiag/RLIBS_1810445f06ff4/RCurl/etc/ca-bundle.crt
  CApath: none
* error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
* Closing connection 0
Quitting from lines 27-32 (vignette.Rmd) 
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
--- failed re-building 'vignette.Rmd'

SUMMARY: processing the following file failed:
  'vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'UKgrid-Ex.R' failed
The error most likely occurred in:

> ### Name: extract_grid
> ### Title: Extracting and Aggregation of the UKgrid Dataset
> ### Aliases: extract_grid
> 
> ### ** Examples
> 
> df <- extract_grid(type = "tsibble", columns = "ND", start = 2017)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: extract_grid ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    help   4.0Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/unbalanced.Rcheck/00install.out' for details.
med: no visible global function definition for 'quantile'
uh: no visible global function definition for 'mad'
uh.bu: no visible global function definition for 'mad'
Undefined global functions or variables:
  mad quantile
Consider adding
  importFrom("stats", "mad", "quantile")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/uncmbb.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/understandBPMN.Rcheck/00install.out' for details.
Running examples in 'unheadr-Ex.R' failed
The error most likely occurred in:

> ### Name: annotate_mf
> ### Title: Annotate meaningful formatting
> ### Aliases: annotate_mf
> 
> ### ** Examples
> 
> example_spreadsheet <- system.file("extdata/dog_test.xlsx", package = "unheadr")
> annotate_mf(example_spreadsheet, orig = Task, new = Task_annotated)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: annotate_mf ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'unheadr-vignette.Rmd' using rmarkdown
Quitting from lines 11-17 (unheadr-vignette.Rmd) 
Error: processing vignette 'unheadr-vignette.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'unheadr-vignette.Rmd'

SUMMARY: processing the following file failed:
  'unheadr-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
dudewicz.unif.test: no visible global function definition for 'runif'
frosini.unif.test: no visible global function definition for 'runif'
hegazy.unif.test: no visible global function definition for 'runif'
kolmogorov.unif.test: no visible global function definition for 'runif'
kuiper.unif.test: no visible global function definition for 'runif'
neyman.unif.test: no visible global function definition for 'runif'
quesenberry.unif.test: no visible global function definition for
  'runif'
sarkadi.unif.test: no visible global function definition for 'runif'
sherman.unif.test: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/UniprotR.Rcheck/00install.out' for details.
cumcount: no visible global function definition for 'setNames'
uniqtag: no visible global function definition for 'setNames'
Undefined global functions or variables:
  setNames
Consider adding
  importFrom("stats", "setNames")
to your NAMESPACE file.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc    2.2Mb
    libs   2.6Mb
Error(s) in re-building vignettes:
--- re-building 'copula.Rmd' using rmarkdown
Quitting from lines 48-53 (copula.Rmd) 
Error: processing vignette 'copula.Rmd' failed with diagnostics:
DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'copula.Rmd'

--- re-building 'distributions.Rmd' using knitr
--- finished re-building 'distributions.Rmd'

--- re-building 'overview.Rmd' using knitr
--- finished re-building 'overview.Rmd'

SUMMARY: processing the following file failed:
  'copula.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/unjoin.Rcheck/00install.out' for details.
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    R      1.4Mb
    doc    1.6Mb
    libs   3.1Mb
GNU make is a SystemRequirements.
Running examples in 'unpivotr-Ex.R' failed
The error most likely occurred in:

> ### Name: as_cells
> ### Title: Tokenize data frames into a tidy 'melted' structure
> ### Aliases: as_cells
> 
> ### ** Examples
> 
> x <- data.frame(a = c(10, 20),
+                 b = c("foo", "bar"),
+                 stringsAsFactors = FALSE)
> x
   a   b
1 10 foo
2 20 bar
> as_cells(x)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: as_cells ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'html.Rmd' using rmarkdown
Quitting from lines 21-25 (html.Rmd) 
Error: processing vignette 'html.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'html.Rmd'

--- re-building 'introduction.Rmd' using rmarkdown
Quitting from lines 147-172 (introduction.Rmd) 
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'introduction.Rmd'

--- re-building 'small-multiples.Rmd' using rmarkdown
Quitting from lines 39-45 (small-multiples.Rmd) 
Error: processing vignette 'small-multiples.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'small-multiples.Rmd'

SUMMARY: processing the following files failed:
  'html.Rmd' 'introduction.Rmd' 'small-multiples.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'unvotes-Ex.R' failed
The error most likely occurred in:

> ### Name: un_roll_calls
> ### Title: Data on each roll call of the United Nations General Assembly
> ### Aliases: un_roll_calls
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Error(s) in re-building vignettes:
--- re-building 'unvotes.Rmd' using rmarkdown
Quitting from lines 24-28 (unvotes.Rmd) 
Error: processing vignette 'unvotes.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'unvotes.Rmd'

SUMMARY: processing the following file failed:
  'unvotes.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/uplifteval.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
installed size is  8.1Mb
  sub-directories of 1Mb or more:
    doc   7.6Mb
Package suggested but not available for checking: 'USAboundariesData'
Error(s) in re-building vignettes:
--- re-building 'usaboundaries-sample-analysis.Rmd' using rmarkdown
Quitting from lines 23-30 (usaboundaries-sample-analysis.Rmd) 
Error: processing vignette 'usaboundaries-sample-analysis.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'usaboundaries-sample-analysis.Rmd'

SUMMARY: processing the following file failed:
  'usaboundaries-sample-analysis.Rmd'

Error: Vignette re-building failed.
Execution halted
readSEER: no visible global function definition for 'read.fwf'
Undefined global functions or variables:
  read.fwf
Consider adding
  importFrom("utils", "read.fwf")
to your NAMESPACE file.
installed size is 12.7Mb
  sub-directories of 1Mb or more:
    data  12.2Mb
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File 'UScensus2000cdp/R/zzz.R':
  .First.lib calls:
    cat(paste("'", ehelp[4], "'\n", "Version ", ehelp[2], " created on ",     ehelp[3], ".\n", sep = ""))
    cat(paste(substring(ehelp[3], first = 16), "\n", "Version ",     substring(ehelp[4], first = 16), " created on ", substring(ehelp[5],         first = 16), ".\n", sep = ""))
    cat(paste("copyright (c) 2009, Zack W. Almquist, University of California-Irvine\n",     sep = ""))
    cat("For citation information, type citation(\"UScensus2000cdp\").\n")
    cat("Type help(package=\"UScensus2000cdp\") to get started.\n")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.
installed size is 27.0Mb
  sub-directories of 1Mb or more:
    data  26.4Mb
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File 'UScensus2000tract/R/zzz.R':
  .First.lib calls:
    cat(paste("'", ehelp[4], "'\n", "Version ", ehelp[2], " created on ",     ehelp[3], ".\n", sep = ""))
    cat(paste(substring(ehelp[3], first = 16), "\n", "Version ",     substring(ehelp[4], first = 16), " created on ", substring(ehelp[5],         first = 16), ".\n", sep = ""))
    cat(paste("copyright (c) 2009, Zack W. Almquist, University of California-Irvine\n",     sep = ""))
    cat("For citation information, type citation(\"UScensus2000tract\").\n")
    cat("Type help(package=\"UScensus2000tract\") to get started.\n")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.
Found the following hidden files and directories:
  data/.Rhistory
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
'library' or 'require' call to 'rgdal' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  'foreign' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Running examples in 'usdata-Ex.R' failed
The error most likely occurred in:

> ### Name: county_complete
> ### Title: United States Counties
> ### Aliases: county_complete
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Running examples in 'usedist-Ex.R' failed
The error most likely occurred in:

> ### Name: pivot_to_numeric_matrix
> ### Title: Convert a data frame in long format to a numeric matrix
> ### Aliases: pivot_to_numeric_matrix
> 
> ### ** Examples
> 
> longdata <- data.frame(
+   SampleID = paste0("Sample", c(1, 1, 1, 2, 2, 3, 3)),
+   FeatureID = paste0("Feature", c(1, 2, 3, 1, 2, 2, 3)),
+   Value = c(132, 41, 7, 56, 11, 929, 83))
> longdata
  SampleID FeatureID Value
1  Sample1  Feature1   132
2  Sample1  Feature2    41
3  Sample1  Feature3     7
4  Sample2  Feature1    56
5  Sample2  Feature2    11
6  Sample3  Feature2   929
7  Sample3  Feature3    83
> pivot_to_numeric_matrix(longdata, SampleID, FeatureID, Value)
Error: Packages "dplyr", "tidyr" are not installed, but are needed by "usedist::pivot_to_numeric_matrix".  Please install the missing packages to use this function.
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(usedist)
  > 
  > test_check("usedist")
  -- 1. Error: Data frame in long format converted to numeric matrix (@test_long_f
  Packages "dplyr", "tidyr" are not installed, but are needed by "usedist::pivot_to_numeric_matrix".  Please install the missing packages to use this function.
  Backtrace:
   1. testthat::expect_equal(...)
   4. usedist::pivot_to_numeric_matrix(...)
   5. usedist:::check_tidyverse()
  
  -- 2. Error: Extra columns are discarded (@test_long_format.R#27)  -------------
  Packages "dplyr", "tidyr" are not installed, but are needed by "usedist::pivot_to_numeric_matrix".  Please install the missing packages to use this function.
  Backtrace:
   1. testthat::expect_equal(...)
   4. usedist::pivot_to_numeric_matrix(...)
   5. usedist:::check_tidyverse()
  
  == testthat results  ===========================================================
  [ OK: 28 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: Data frame in long format converted to numeric matrix (@test_long_format.R#18) 
  2. Error: Extra columns are discarded (@test_long_format.R#27) 
  
  Error: testthat unit tests failed
  Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/useful.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/usefun.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'Data_sources_and_cleaning.Rmd' using rmarkdown
--- finished re-building 'Data_sources_and_cleaning.Rmd'

--- re-building 'Introduction.Rmd' using rmarkdown
Loading required package: usfertilizer
Loading required package: tidyverse
Error: package or namespace load failed for 'tidyverse' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Quitting from lines 46-47 (Introduction.Rmd) 
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
could not find function "glimpse"
--- failed re-building 'Introduction.Rmd'

SUMMARY: processing the following file failed:
  'Introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'USgrid-Ex.R' failed
The error most likely occurred in:

> ### Name: Cal_elec
> ### Title: Demand for California Independent System Operator (CISO)
> ### Aliases: Cal_elec
> ### Keywords: datasets time-series
> 
> ### ** Examples
> 
> 
> data(Cal_elec)
> 
> library(plotly)
Loading required package: ggplot2
Error: package or namespace load failed for 'plotly' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/ushr.Rcheck/00install.out' for details.
installed size is  8.3Mb
  sub-directories of 1Mb or more:
    doc       1.6Mb
    extdata   6.4Mb
Malformed Title field: should not end in a period.
Running examples in 'utile.tables-Ex.R' failed
The error most likely occurred in:

> ### Name: build_model.coxph
> ### Title: Build Cox PH models
> ### Aliases: build_model.coxph
> 
> ### ** Examples
> 
> library(survival)
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Running examples in 'utile.visuals-Ex.R' failed
The error most likely occurred in:

> ### Name: append_table
> ### Title: Append a ggplot2 table to the bottom of a ggplot2 plot
> ### Aliases: append_table
> 
> ### ** Examples
> 
> library(survival)
> library(ggplot2)
> library(broom) # tidy() model data
Error: package or namespace load failed for 'broom' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/utilsIPEA.Rcheck/00install.out' for details.
histw: no visible global function definition for 'plot.new'
histw: no visible global function definition for 'plot.window'
histw: no visible global function definition for 'axis'
histw: no visible global function definition for 'rect'
histw: no visible global function definition for 'lines'
uwham.boot: no visible binding for global variable 'var'
Undefined global functions or variables:
  axis lines plot.new plot.window rect var
Consider adding
  importFrom("graphics", "axis", "lines", "plot.new", "plot.window",
             "rect")
  importFrom("stats", "var")
to your NAMESPACE file.
installed size is 25.1Mb
  sub-directories of 1Mb or more:
    doc    1.8Mb
    libs  23.2Mb
Packages suggested but not available for checking: 'vaers', 'vaersND'
Packages suggested but not available for checking: 'vaers', 'vaersND'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/VALERIE.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/valr.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/VancouvR.Rcheck/00install.out' for details.
installed size is 90.2Mb
  sub-directories of 1Mb or more:
    extdata   1.0Mb
    gdal      2.1Mb
    libs     80.6Mb
    proj      6.0Mb
Error(s) in re-building vignettes:
--- re-building 'vapour.Rmd' using rmarkdown
Quitting from lines 63-67 (vapour.Rmd) 
Error: processing vignette 'vapour.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'vapour.Rmd'

SUMMARY: processing the following file failed:
  'vapour.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/VarBundle.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/varEst.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Mammen: no visible global function definition for 'runif'
PR2: no visible global function definition for 'ar.burg'
PR2: no visible global function definition for 'pt'
PR2: no visible global function definition for 'pf'
PR3: no visible global function definition for 'ar.burg'
PR3: no visible global function definition for 'pt'
PR3: no visible global function definition for 'pf'
VAR.FOR: no visible global function definition for 'qnorm'
VAR.ForeB: no visible global function definition for 'runif'
VAR.LRtest: no visible global function definition for 'pchisq'
VAR.LRtest: no visible global function definition for 'pf'
VAR.PI: no visible global function definition for 'quantile'
VAR.Waldtest: no visible global function definition for 'pf'
VAR.irf: no visible global function definition for 'par'
VAR.irf: no visible global function definition for 'abline'
VAR1.sim: no visible global function definition for 'rnorm'
resamp: no visible global function definition for 'runif'
Undefined global functions or variables:
  abline ar.burg par pchisq pf pt qnorm quantile rnorm runif
Consider adding
  importFrom("graphics", "abline", "par")
  importFrom("stats", "ar.burg", "pchisq", "pf", "pt", "qnorm",
             "quantile", "rnorm", "runif")
to your NAMESPACE file.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.0/variantspark.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
--- re-building 'varrank.Rmd' using knitr
Quitting from lines 79-91 (varrank.Rmd) 
Error: processing vignette 'varrank.Rmd' failed with diagnostics:
package or namespace load failed for 'caret' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'varrank.Rmd'

SUMMARY: processing the following file failed:
  'varrank.Rmd'

Error: Vignette re-building failed.
Execution halted
Found the following sources/headers not terminated with a newline:
  inst/include/Algorithm.h
  inst/include/AlgorithmCategorical.h
  inst/include/AlgorithmContinuous.h
  inst/include/AlgorithmInteger.h
  inst/include/AlgorithmMixed.h
  inst/include/Data.h
  inst/include/DataCategorical.h
  inst/include/DataContinuous.h
  inst/include/DataInteger.h
  inst/include/DataMixed.h
  inst/include/Param.h
  inst/include/ParamCategorical.h
  inst/include/ParamContinuous.h
  inst/include/ParamInteger.h
  inst/include/ParamMixed.h
  inst/include/XEM.h
  inst/include/XEMCategorical.h
  inst/include/XEMContinuous.h
  inst/include/XEMInteger.h
  inst/include/XEMMixed.h
  inst/include/XEMPen.h
Some compilers warn on such files.
Running examples in 'varsExplore-Ex.R' failed
The error most likely occurred in:

> ### Name: vars_explore
> ### Title: Searchable variable explorer with labelled variables
> ### Aliases: vars_explore
> 
> ### ** Examples
> 
> 
> qog <- rio::import("http://www.qogdata.pol.gu.se/dataarchive/qog_bas_cs_jan18.dta")
> vars_explore(qog, silent = FALSE, viewer = FALSE)
Error in library.dynam(lib, package, package.lib) : 
  DLL 'dplyr' not found: maybe not installed for this architecture?
Calls: vars_explore ... asNamespace -> getNamespace -> loadNamespace -> library.dynam
Execution halted
Error(s) in re-building vignettes:
--- re-building 'basic_usage.Rmd' using rmarkdown
Quitting from lines 19-21 (basic_usage.Rmd) 
Error: processing vignette 'basic_usage.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'basic_usage.Rmd'

SUMMARY: processing the following file failed:
  'basic_usage.Rmd'

Error: Vignette re-building failed.
Execution halted
black_scholes: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  pnorm
Consider adding
  importFrom("stats", "pnorm")
to your NAMESPACE file.
burdenPlot: no visible global function definition for 'density'
burdenPlot: no visible global function definition for 'axis'
burdenPlot: no visible global function definition for 'points'
burdenPlot: no visible global function definition for 'lines'
burdenPlot: no visible global function definition for 'abline'
burdenPlot: no visible global function definition for 'text'
burdenPlot: no visible global function definition for 'sd'
burdenPlot: no visible global function definition for 'segments'
vbdm: no visible global function definition for 'var'
vbdm: no visible global function definition for 'pchisq'
vbdmR : run_discrete_mixture_vanilla: no visible global function
  definition for 'var'
vbdmR: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  abline axis density lines pchisq points sd segments text var
Consider adding
  importFrom("graphics", "abline", "axis", "lines", "points", "segments",
             "text")
  importFrom("stats", "density", "pchisq", "sd", "var")
to your NAMESPACE file.
compute_KL : rtnorm: no visible global function definition for 'runif'
compute_KL : rtnorm: no visible global function definition for 'dnorm'
compute_KL: no visible global function definition for 'qnorm'
compute_KL: no visible global function definition for 'dnorm'
compute_KL: no visible global function definition for 'pnorm'
compute_KL: no visible global function definition for 'var'
compute_KL: no visible global function definition for 'rbinom'
compute_KL: no visible global function definition for 'rnorm'
compute_KL: no visible global function definition for 'sd'
vbsr: no visible global function definition for 'qchisq'
vbsr: no visible global function definition for 'var'
vbsr: no visible global function definition for 'pchisq'
vbsr: no visible global function definition for 'sd'
vbsr: no visible binding for global variable 'sd'
Undefined global functions or variables:
  dnorm pchisq pnorm qchisq qnorm rbinom rnorm runif sd var
Consider adding
  importFrom("stats", "dnorm", "pchisq", "pnorm", "qchisq", "qnorm",
             "rbinom", "rnorm", "runif", "sd", "var")
to your NAMESPACE file.
Package vignette with placeholder title 'Vignette Title':
  'VBTree_vignette.Rmd'
Compare2FDS: no visible global function definition for 'runif'
Compare2FDS: no visible global function definition for 'lm'
Compare2FDS: no visible global function definition for 'model.matrix'
Compare2FDS: no visible global function definition for 'abline'
Compare2FDS: no visible global function definition for 'lines'
Compare2FDS: no visible global function definition for 'text'
Compare2Vdg: no visible global function definition for 'par'
Compare2Vdg: no visible global function definition for 'lines'
Compare2Vdg: no visible global function definition for 'legend'
FDSPlot: no visible global function definition for 'runif'
FDSPlot: no visible global function definition for 'lm'
FDSPlot: no visible global function definition for 'model.matrix'
FDSPlot: no visible global function definition for 'abline'
Vdgraph: no visible global function definition for 'par'
Vdgraph: no visible global function definition for 'lines'
Vdgraph: no visible global function definition for 'legend'
Undefined global functions or variables:
  abline legend lines lm model.matrix par runif text
Consider adding
  importFrom("graphics", "abline", "legend", "lines", "par", "text")
  importFrom("stats", "lm", "model.matrix", "runif")
to your NAMESPACE file.
calculateParameters,AffineTransformation: no visible global function
  definition for 'lm'
calculateParameters,AffineTransformation: no visible global function
  definition for 'coef'
calculateParameters,SimilarityTransformation: no visible global
  function definition for 'lm'
calculateParameters,SimilarityTransformation: no visible global
  function definition for 'coef'
plotGridTransformation,Cartesian2DCoordinateTransformation: no visible
  global function definition for 'points'
plotGridTransformation,Cartesian2DCoordinateTransformation: no visible
  global function definition for 'legend'
Undefined global functions or variables:
  coef legend lm points
Consider adding
  importFrom("graphics", "legend", "points")
  importFrom("stats", "coef", "lm")
to your NAMESPACE file.
DrawDensity3D: no visible global function definition for 'colorRamp'
DrawDensity3D: no visible global function definition for 'rgb'
ReadFromFile3D: no visible global function definition for 'read.table'
Undefined global functions or variables:
  colorRamp read.table rgb
Consider adding
  importFrom("grDevices", "colorRamp", "rgb")
  importFrom("utils", "read.table")
to your NAMESPACE file.
Running examples in 'vegalite-Ex.R' failed
The error most likely occurred in:

> ### Name: from_spec
> ### Title: Take a JSON Vega-Lite Spec and render as an htmlwidget
> ### Aliases: from_spec
> 
> ### ** Examples
> 
> from_spec("http://rud.is/dl/embedded.json")
Warning in file(con, "r") :
  InternetOpenUrl failed: 'Die Serververbindung wurde zurückgesetzt.'
Error in file(con, "r") : cannot open the connection
Calls: from_spec -> readLines -> file
Execution halted
Error(s) in re-building vignettes:
--- re-building 'VegetationClassification.Rnw' using Sweave
Loading required package: Rcpp
Loading required package: permute
Loading required package: lattice
This is vegan 2.5-6
--- finished re-building 'VegetationClassification.Rnw'

--- re-building 'CTA.Rmd' using rmarkdown
Quitting from lines 23-27 (CTA.Rmd) 
Error: processing vignette 'CTA.Rmd' failed with diagnostics:
package or namespace load failed for 'smacof' in library.dynam(lib, package, package.lib):
 DLL 'dplyr' not found: maybe not installed for this architecture?
--- failed re-building 'CTA.Rmd'

--- re-building 'MedRegExample.Rmd' using rmarkdown
--- finished re-building 'MedRegExample.Rmd'

SUMMARY: processing the following file failed:
  'CTA.Rmd'

Error: Vignette re-building failed.
Execution halted
'library' or 'require' call to 'stats' which was already attached by Depends.
  Please remove these calls from your code.
H: warning in do.call(what = bootstrap, arg = c(abundances =
  list(abundances), func = H, func.arg = list(func.arg), boot.arg)):
  partial argument match of 'arg' to 'args'
M.homog: warning in do.call(what = bootstrap, arg = c(abundances =
  list(abundances), func = M.homog, func.arg = list(func.arg),
  boot.arg)): partial argument match of 'arg' to 'args'
Rel.homog: warning in do.call(what = bootstrap, arg = c(abundances =
  list(abundances), func = Rel.homog, func.arg = list(func.arg),
  boot.arg)): partial argument match of 'arg' to 'args'
bootstrap: warning in do.call(what = func, arg = list(boots[, , i])):
  partial argument match of 'arg' to 'args'
bootstrap: warning in do.call(what = func, arg = c(abundances =
  list(boots[, , i]), func.arg)): partial argument match of 'arg' to
  'args'
d: warning in do.call(what = bootstrap, arg = c(abundances =
  list(abundances), func = d, func.arg = list(func.arg), boot.arg)):
  partial argument match of 'arg' to 'args'
sim.groups: warning in do.call(what = bootstrap, arg = c(abundances =
  list(rbind(scores[i, ], scores[j, ])), func = similarity, func.arg =
  list(func.arg), boot.arg)): partial argument match of 'arg' to 'args'
sim.table: warning in do.call(what = bootstrap, arg = c(abundances =
  list(rbind(scores[i, ], scores[j, ])), func = similarity, func.arg =
  list(func.arg), boot.arg)): partial argument match of 'arg' to 'args'
similarity: warning in do.call(what = bootstrap, arg = c(abundances =
  list(abundances), func = similarity, func.arg = list(func.arg),
  boot.arg)): partial argument match of 'arg' to 'args'
turnover: warning in do.call(what = bootstrap, arg = c(abundances =
  list(abundances), func = turnover, func.arg = list(func.arg),
  boot.arg)): partial argument match of 'arg' to 'args'
prepare_Rd: H.Rd:41-42: Dropping empty section \note
prepare_Rd: M.homog.Rd:19-21: Dropping empty section \details
prepare_Rd: M.homog.Rd:35-36: Dropping empty section \note
prepare_Rd: Rel.homog.Rd:24-25: Dropping empty section \note
prepare_Rd: bootstrap.Rd:34: Dropping empty section \note
prepare_Rd: d.Rd:35-36: Dropping empty section \note
prepare_Rd: normalize.rows.Rd:26-27: Dropping empty section \note
prepare_Rd: p.q.sum.Rd:23-24: Dropping empty section \note
prepare_Rd: p.q.sum.Rd:26: Dropping empty section \examples
prepare_Rd: sim.groups.Rd:27-28: Dropping empty section \note
prepare_Rd: sim.table.Rd:25-26: Dropping empty section \note
prepare_Rd: similarity.Rd:25-26: Dropping empty section \note
prepare_Rd: turnover.Rd:17-18: Dropping empty section \details
prepare_Rd: turnover.Rd:29-30: Dropping empty section \note