Error(s) in re-building vignettes:
--- re-building ‘sparkr-vignettes.Rmd’ using rmarkdown

Attaching package: 'SparkR'

The following objects are masked from 'package:stats':

    cov, filter, lag, na.omit, predict, sd, var, window

The following objects are masked from 'package:base':

    as.data.frame, colnames, colnames<-, drop, endsWith, intersect,
    rank, rbind, sample, startsWith, subset, summary, transform, union

Picked up _JAVA_OPTIONS: -XX:-UsePerfData 
Picked up _JAVA_OPTIONS: -XX:-UsePerfData 
20/07/04 07:08:54 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Using Spark's default log4j profile: org/apache/spark/log4j-defaults.properties
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).

[Stage 0:>                                                          (0 + 1) / 1]
                                                                                

[Stage 1:>                                                          (0 + 1) / 1]20/07/04 07:09:26 ERROR Executor: Exception in task 0.0 in stage 1.0 (TID 1)
java.net.SocketTimeoutException: Accept timed out
	at java.net.PlainSocketImpl.socketAccept(Native Method)
	at java.net.AbstractPlainSocketImpl.accept(AbstractPlainSocketImpl.java:409)
	at java.net.ServerSocket.implAccept(ServerSocket.java:560)
	at java.net.ServerSocket.accept(ServerSocket.java:528)
	at org.apache.spark.api.r.RRunner$.createRWorker(RRunner.scala:383)
	at org.apache.spark.api.r.RRunner.compute(RRunner.scala:69)
	at org.apache.spark.api.r.BaseRRDD.compute(RRDD.scala:54)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
20/07/04 07:09:26 WARN TaskSetManager: Lost task 0.0 in stage 1.0 (TID 1, localhost, executor driver): java.net.SocketTimeoutException: Accept timed out
	at java.net.PlainSocketImpl.socketAccept(Native Method)
	at java.net.AbstractPlainSocketImpl.accept(AbstractPlainSocketImpl.java:409)
	at java.net.ServerSocket.implAccept(ServerSocket.java:560)
	at java.net.ServerSocket.accept(ServerSocket.java:528)
	at org.apache.spark.api.r.RRunner$.createRWorker(RRunner.scala:383)
	at org.apache.spark.api.r.RRunner.compute(RRunner.scala:69)
	at org.apache.spark.api.r.BaseRRDD.compute(RRDD.scala:54)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

20/07/04 07:09:26 ERROR TaskSetManager: Task 0 in stage 1.0 failed 1 times; aborting job
20/07/04 07:09:26 ERROR RBackendHandler: dfToCols on org.apache.spark.sql.api.r.SQLUtils failed
java.lang.reflect.InvocationTargetException
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.apache.spark.api.r.RBackendHandler.handleMethodCall(RBackendHandler.scala:167)
	at org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:108)
	at org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:40)
	at io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:99)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:379)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:365)
	at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:357)
	at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:286)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:379)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:365)
	at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:357)
	at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:379)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:365)
	at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:357)
	at io.netty.handler.codec.ByteToMessageDecoder.fireChannelRead(ByteToMessageDecoder.java:321)
	at io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:295)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:379)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:365)
	at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:357)
	at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1410)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:379)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:365)
	at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:919)
	at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:163)
	at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:714)
	at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:650)
	at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:576)
	at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:493)
	at io.netty.util.concurrent.SingleThreadEventExecutor$4.run(SingleThreadEventExecutor.java:989)
	at io.netty.util.internal.ThreadExecutorMap$2.run(ThreadExecutorMap.java:74)
	at io.netty.util.concurrent.FastThreadLocalRunnable.run(FastThreadLocalRunnable.java:30)
	at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 1.0 failed 1 times, most recent failure: Lost task 0.0 in stage 1.0 (TID 1, localhost, executor driver): java.net.SocketTimeoutException: Accept timed out
	at java.net.PlainSocketImpl.socketAccept(Native Method)
	at java.net.AbstractPlainSocketImpl.accept(AbstractPlainSocketImpl.java:409)
	at java.net.ServerSocket.implAccept(ServerSocket.java:560)
	at java.net.ServerSocket.accept(ServerSocket.java:528)
	at org.apache.spark.api.r.RRunner$.createRWorker(RRunner.scala:383)
	at org.apache.spark.api.r.RRunner.compute(RRunner.scala:69)
	at org.apache.spark.api.r.BaseRRDD.compute(RRDD.scala:54)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

Driver stacktrace:
	at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1891)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1879)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1878)
	at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
	at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
	at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1878)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:927)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:927)
	at scala.Option.foreach(Option.scala:257)
	at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:927)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2112)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2061)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2050)
	at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
	at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:738)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:2061)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:2082)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:2101)
	at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:365)
	at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:38)
	at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$collectFromPlan(Dataset.scala:3389)
	at org.apache.spark.sql.Dataset$$anonfun$collect$1.apply(Dataset.scala:2788)
	at org.apache.spark.sql.Dataset$$anonfun$collect$1.apply(Dataset.scala:2788)
	at org.apache.spark.sql.Dataset$$anonfun$52.apply(Dataset.scala:3370)
	at org.apache.spark.sql.execution.SQLExecution$$anonfun$withNewExecutionId$1.apply(SQLExecution.scala:80)
	at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:127)
	at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:75)
	at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3369)
	at org.apache.spark.sql.Dataset.collect(Dataset.scala:2788)
	at org.apache.spark.sql.api.r.SQLUtils$.dfToCols(SQLUtils.scala:181)
	at org.apache.spark.sql.api.r.SQLUtils.dfToCols(SQLUtils.scala)
	... 37 more
Caused by: java.net.SocketTimeoutException: Accept timed out
	at java.net.PlainSocketImpl.socketAccept(Native Method)
	at java.net.AbstractPlainSocketImpl.accept(AbstractPlainSocketImpl.java:409)
	at java.net.ServerSocket.implAccept(ServerSocket.java:560)
	at java.net.ServerSocket.accept(ServerSocket.java:528)
	at org.apache.spark.api.r.RRunner$.createRWorker(RRunner.scala:383)
	at org.apache.spark.api.r.RRunner.compute(RRunner.scala:69)
	at org.apache.spark.api.r.BaseRRDD.compute(RRDD.scala:54)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	... 1 more
Quitting from lines 97-98 (sparkr-vignettes.Rmd) 
Error: processing vignette 'sparkr-vignettes.Rmd' failed with diagnostics:
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 1.0 failed 1 times, most recent failure: Lost task 0.0 in stage 1.0 (TID 1, localhost, executor driver): java.net.SocketTimeoutException: Accept timed out
	at java.net.PlainSocketImpl.socketAccept(Native Method)
	at java.net.AbstractPlainSocketImpl.accept(AbstractPlainSocketImpl.java:409)
	at java.net.ServerSocket.implAccept(ServerSocket.java:560)
	at java.net.ServerSocket.accept(ServerSocket.java:528)
	at org.apache.spark.api.r.RRunner$.createRWorker(RRunner.scala:383)
	at org.apache.spark.api.r.RRunner.compute(RRunner.scala:69)
	at org.apache.spark.api.r.BaseRRDD.compute(RRDD.scala:54)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

Driver stacktrace:
	at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1891)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1879)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1878)
	at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
	at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
	at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1878)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:927)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:927)
	at scala.Option.foreach(Option.scala:257)
	at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:927)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2112)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2061)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2050)
	at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
	at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:738)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:2061)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:2082)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:2101)
	at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:365)
	at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:38)
	at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$collectFromPlan(Dataset.scala:3389)
	at org.apache.spark.sql.Dataset$$anonfun$collect$1.apply(Dataset.scala:2788)
	at org.apache.spark.sql.Dataset$$anonfun$collect$1.apply(Dataset.scala:2788)
	at org.apache.spark.sql.Dataset$$anonfun$52.apply(Dataset.scala:3370)
	at org.apache.spark.sql.execution.SQLExecution$$anonfun$withNewExecutionId$1.apply(SQLExecution.scala:80)
	at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:127)
	at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:75)
	at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3369)
	at org.apache.spark.sql.Dataset.collect(Dataset.scala:2788)
	at org.apache.spark.sql.api.r.SQLUtils$.dfToCols(SQLUtils.scala:181)
	at org.apache.spark.sql.api.r.SQLUtils.dfToCols(SQLUtils.scala)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.apache.spark.api.r.RBackendHandler.handleMethodCall(RBackendHandler.scala:167)
	at org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:108)
	at org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:40)
	at io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:99)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:379)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:365)
	at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:357)
	at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:286)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:379)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:365)
	at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:357)
	at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:379)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:365)
	at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:357)
	at io.netty.handler.codec.ByteToMessageDecoder.fireChannelRead(ByteToMessageDecoder.java:321)
	at io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:295)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:379)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:365)
	at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:357)
	at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1410)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:379)
	at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:365)
	at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:919)
	at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:163)
	at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:714)
	at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:650)
	at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:576)
	at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:493)
	at io.netty.util.concurrent.SingleThreadEventExecutor$4.run(SingleThreadEventExecutor.java:989)
	at 
--- failed re-building ‘sparkr-vignettes.Rmd’

SUMMARY: processing the following file failed:
  ‘sparkr-vignettes.Rmd’

Error: Vignette re-building failed.
Execution halted