Running 'heatmap2Test.R' [2s]
  Comparing 'heatmap2Test.Rout' to 'heatmap2Test.Rout.save' ...18,21d17
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
24,25d19
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
27,28d20
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
31,34d22
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
38,40c26
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
< In addition: Warning message:
---
> Warning message:
44,46c30
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
< In addition: Warning message:
---
> Warning message:
51,53c35
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
< In addition: Warning message:
---
> Warning message:
57,59c39
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
< In addition: Warning message:
---
> Warning message:
64,66c44
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
< In addition: Warning message:
---
> Warning message:
70,72c48
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
< In addition: Warning message:
---
> Warning message:
76,78c52
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
< In addition: Warning message:
---
> Warning message:
85,87c59
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
< In addition: Warning message:
---
> Warning message:
97,98d68
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
103,105c73
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
< In addition: Warning message:
---
> Warning message:
109,110d76
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
129,132d94
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
138,139d99
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
141,142d100
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
145,146d102
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
148,149d103
< Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
<   could not find function "%||%"
  Running 'heatmap_to_heatmap.2_test.R' [1s]
  Running 'plotmeans_nobars.R' [1s]
  Running 'test_plottingDeepDendrogram.R' [2s]
Running the tests in 'tests/test_plottingDeepDendrogram.R' failed.
Complete output:
  > library(gplots)
  
  Attaching package: 'gplots'
  
  The following object is masked from 'package:stats':
  
      lowess
  
  > 
  > dat <- as.matrix(read.csv(file="dat.csv", row.names=1))
  > dist2 <- function(x) as.dist(1-cor(t(x), method="pearson"))
  > hclust1 <- function(x) hclust(x, method = "single")
  > 
  > distance <- dist2(dat)
  > cluster  <- hclust1(distance)
  > 
  > dend <- as.dendrogram(cluster)
  > 
  > ## R's default recursion limits will be exceeded when plotting this dendrogram
  > try( gplots:::plot.dendrogram(dend) )
  Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
    could not find function "%||%"
  > try( heatmap.2(dat, Rowv=dend) )
  Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
    could not find function "%||%"
  Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
    could not find function "%||%"
  > 
  > ## Increase them and try again
  > options("expressions"=20000)
  > gplots:::plot.dendrogram(dend)
  Error in attr(x, "x.member") %||% (attr(x, "members") %||% 1L) : 
    could not find function "%||%"
  Calls: <Anonymous> -> .memberDend
  Execution halted