Error(s) in re-building vignettes:
  ...
--- re-building ‘bayes_factors.Rmd’ using rmarkdown
Computation of Bayes factors: sampling priors, please wait...
Computation of Bayes factors: sampling priors, please wait...
Loading required namespace: bridgesampling
Warning in .bayesfactor_models_stan(..., denominator = denominator) :
  Bayes factors might not be precise.
For precise Bayes factors, it is recommended sampling at least 40,000 posterior samples.
Computation of Bayes factors: estimating marginal likelihood, please wait...
Warning in .bayesfactor_models_stan(..., denominator = denominator) :
  Bayes factors might not be precise.
For precise Bayes factors, it is recommended sampling at least 40,000 posterior samples.
Computation of Bayes factors: estimating marginal likelihood, please wait...
Computation of Bayes factors: sampling priors, please wait...
Computation of Bayes factors: sampling priors, please wait...
Computation of Bayes factors: sampling priors, please wait...
Computation of Bayes factors: sampling priors, please wait...
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'bayes_factors.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘bayes_factors.Rmd’

--- re-building ‘bayestestR.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: Rcpp
rstanarm (Version 2.19.3, packaged: 2020-02-11 05:16:41 UTC)
- Do not expect the default priors to remain the same in future rstanarm versions.
Thus, R scripts should specify priors explicitly, even if they are just the defaults.
- For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores())
- bayesplot theme set to bayesplot::theme_default()
   * Does _not_ affect other ggplot2 plots
   * See ?bayesplot_theme_set for details on theme setting
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'bayestestR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘bayestestR.Rmd’

--- re-building ‘credible_interval.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required namespace: logspline
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'credible_interval.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘credible_interval.Rmd’

--- re-building ‘example1.Rmd’ using rmarkdown
Loading required package: Rcpp
rstanarm (Version 2.19.3, packaged: 2020-02-11 05:16:41 UTC)
- Do not expect the default priors to remain the same in future rstanarm versions.
Thus, R scripts should specify priors explicitly, even if they are just the defaults.
- For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores())
- bayesplot theme set to bayesplot::theme_default()
   * Does _not_ affect other ggplot2 plots
   * See ?bayesplot_theme_set for details on theme setting
`geom_smooth()` using formula 'y ~ x'

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Computation of Bayes factors: sampling priors, please wait...
Loading required namespace: logspline
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'example1.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘example1.Rmd’

--- re-building ‘example2.Rmd’ using rmarkdown
Loading required package: coda
Loading required package: Matrix
************
Welcome to BayesFactor 0.9.12-4.2. If you have questions, please contact Richard Morey (richarddmorey@gmail.com).

Type BFManual() to open the manual.
************

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: Rcpp
rstanarm (Version 2.19.3, packaged: 2020-02-11 05:16:41 UTC)
- Do not expect the default priors to remain the same in future rstanarm versions.
Thus, R scripts should specify priors explicitly, even if they are just the defaults.
- For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores())
- bayesplot theme set to bayesplot::theme_default()
   * Does _not_ affect other ggplot2 plots
   * See ?bayesplot_theme_set for details on theme setting
Computation of Bayes factors: sampling priors, please wait...
Loading required namespace: logspline
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'example2.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘example2.Rmd’

--- re-building ‘example3.Rmd’ using rmarkdown
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'example3.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘example3.Rmd’

--- re-building ‘guidelines.Rmd’ using rmarkdown
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'guidelines.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘guidelines.Rmd’

--- re-building ‘indicesEstimationComparison.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'indicesEstimationComparison.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘indicesEstimationComparison.Rmd’

--- re-building ‘indicesExistenceComparison.Rmd’ using rmarkdown
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'indicesExistenceComparison.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘indicesExistenceComparison.Rmd’

--- re-building ‘probability_of_direction.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'probability_of_direction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘probability_of_direction.Rmd’

--- re-building ‘region_of_practical_equivalence.Rmd’ using rmarkdown
Loading required package: Rcpp
rstanarm (Version 2.19.3, packaged: 2020-02-11 05:16:41 UTC)
- Do not expect the default priors to remain the same in future rstanarm versions.
Thus, R scripts should specify priors explicitly, even if they are just the defaults.
- For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores())
- bayesplot theme set to bayesplot::theme_default()
   * Does _not_ affect other ggplot2 plots
   * See ?bayesplot_theme_set for details on theme setting
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'region_of_practical_equivalence.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘region_of_practical_equivalence.Rmd’

SUMMARY: processing the following files failed:
  ‘bayes_factors.Rmd’ ‘bayestestR.Rmd’ ‘credible_interval.Rmd’
  ‘example1.Rmd’ ‘example2.Rmd’ ‘example3.Rmd’ ‘guidelines.Rmd’
  ‘indicesEstimationComparison.Rmd’ ‘indicesExistenceComparison.Rmd’
  ‘probability_of_direction.Rmd’ ‘region_of_practical_equivalence.Rmd’

Error: Vignette re-building failed.
Execution halted