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--- re-building 'How_to_use_the_NetworkExtinction_Package.Rmd' using rmarkdown
network: Classes for Relational Data
Version 1.16.0 created on 2019-11-30.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
                    Mark S. Handcock, University of California -- Los Angeles
                    David R. Hunter, Penn State University
                    Martina Morris, University of Washington
                    Skye Bender-deMoll, University of Washington
 For citation information, type citation("network").
 Type help("network-package") to get started.


Attaching package: 'NetworkExtinction'

The following object is masked _by_ '.GlobalEnv':

    net

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Warning in network.density(Temp) :
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Warning in network.density(Temp) :
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Warning in network.density(Temp) :
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Warning in chisq.test(x = Hypothesis$DF$AccSecondaryExtinction, y = Nullmodel$sims$AccSecondaryExtinction[1:length(Hypothesis$DF$AccSecondaryExtinction)]) :
  Chi-squared approximation may be incorrect
Joining, by = c("K", "Cumulative", "Scenario", "LogK", "LogCum", "Exp")
Joining, by = c("K", "Cumulative", "Scenario", "LogK", "LogCum", "Exp", "LogExp")
Joining, by = c("sigma", "isConv", "finTol", "logLik", "AIC", "BIC", "deviance", "df.residual", "model", "Normal.Resid")
Joining, by = c("sigma", "isConv", "finTol", "logLik", "AIC", "BIC", "deviance", "df.residual", "model", "Normal.Resid")
Joining, by = c("logLik", "AIC", "BIC", "deviance", "df.residual", "model", "Normal.Resid")
Joining, by = c("logLik", "AIC", "BIC", "deviance", "df.residual", "model", "Normal.Resid", "null.deviance", "df.null")
Joining, by = c("logLik", "AIC", "BIC", "deviance", "df.residual", "model", "Normal.Resid", "null.deviance", "df.null")
Warning: Removed 18 row(s) containing missing values (geom_path).
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'How_to_use_the_NetworkExtinction_Package.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building 'How_to_use_the_NetworkExtinction_Package.Rmd'

SUMMARY: processing the following file failed:
  'How_to_use_the_NetworkExtinction_Package.Rmd'

Error: Vignette re-building failed.
Execution halted