Error(s) in re-building vignettes:
  ...
--- re-building 'MTAR.Rmd' using rmarkdown
Calculating summary statistics for continuous trait1
Calculating summary statistics for continuous trait2
Calculating summary statistics for continuous trait3
Calculating summary statistics for continuous trait1
Calculating summary statistics for continuous trait2
Calculating summary statistics for continuous trait1
Calculating summary statistics for continuous trait2
Calculating summary statistics for continuous trait3
There are 3 studies in the data set and 3 traits in total.
There are 14 rare variants with MAF less or equal to 0.05
Warning in CompQuadForm::davies(q = Q, lambda = lambda, delta = delta, acc = acc) :
  Consider playing with 'lim' or 'acc'.
Warning in CompQuadForm::davies(q = Q, lambda = lambda, delta = delta, acc = acc) :
  Consider playing with 'lim' or 'acc'.
Warning in CompQuadForm::davies(q = Q, lambda = lambda, delta = delta, acc = acc) :
  Consider playing with 'lim' or 'acc'.
Warning in chol.default(B, pivot = TRUE) :
  the matrix is either rank-deficient or indefinite
Warning in CompQuadForm::davies(q = Q, lambda = lambda, delta = delta, acc = acc) :
  Consider playing with 'lim' or 'acc'.
Warning in chol.default(B, pivot = TRUE) :
  the matrix is either rank-deficient or indefinite
Warning in CompQuadForm::davies(q = Q, lambda = lambda, delta = delta, acc = acc) :
  Consider playing with 'lim' or 'acc'.
Warning in chol.default(B, pivot = TRUE) :
  the matrix is either rank-deficient or indefinite
Warning in CompQuadForm::davies(q = Q, lambda = lambda, delta = delta, acc = acc) :
  Consider playing with 'lim' or 'acc'.
Warning in chol.default(B, pivot = TRUE) :
  the matrix is either rank-deficient or indefinite
Warning in CompQuadForm::davies(q = Q, lambda = lambda, delta = delta, acc = acc) :
  Consider playing with 'lim' or 'acc'.
Warning in chol.default(B, pivot = TRUE) :
  the matrix is either rank-deficient or indefinite
Warning in CompQuadForm::davies(q = Q, lambda = lambda, delta = delta, acc = acc) :
  Consider playing with 'lim' or 'acc'.
Warning in chol.default(B, pivot = TRUE) :
  the matrix is either rank-deficient or indefinite
Warning in CompQuadForm::davies(q = Q, lambda = lambda, delta = delta, acc = acc) :
  Consider playing with 'lim' or 'acc'.
Warning in chol.default(B, pivot = TRUE) :
  the matrix is either rank-deficient or indefinite
Warning in CompQuadForm::davies(q = Q, lambda = lambda, delta = delta, acc = acc) :
  Consider playing with 'lim' or 'acc'.
Warning in chol.default(B, pivot = TRUE) :
  the matrix is either rank-deficient or indefinite
Warning in CompQuadForm::davies(q = Q, lambda = lambda, delta = delta, acc = acc) :
  Consider playing with 'lim' or 'acc'.
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'MTAR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building 'MTAR.Rmd'

SUMMARY: processing the following file failed:
  'MTAR.Rmd'

Error: Vignette re-building failed.
Execution halted