Error(s) in re-building vignettes:
  ...
--- re-building 'Basic_analysis_of_DOM_samples.Rmd' using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'Basic_analysis_of_DOM_samples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building 'Basic_analysis_of_DOM_samples.Rmd'

--- re-building 'PARAFAC_analysis_of_EEM.Rmd' using rmarkdown

Attaching package: 'dplyr'

The following object is masked from 'package:kableExtra':

    group_rows

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Warning: Removed 104 rows containing non-finite values (stat_contour).
Warning: Removed 416 rows containing non-finite values (stat_contour).
Warning: Removed 416 rows containing non-finite values (stat_contour).
Warning: Removed 416 rows containing non-finite values (stat_contour).
Warning: Removed 6294 rows containing non-finite values (stat_contour).
Warning: Removed 312 rows containing non-finite values (stat_contour).
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
Warning: Removed 2452 rows containing non-finite values (stat_contour).
Warning: Computation failed in `stat_contour()`:
Number of x coordinates must match number of columns in density matrix.
New names:
* x -> x...1
* x -> x...2
* x -> x...3
* x -> x...4
* x -> x...5
* ...
pandoc-citeproc: Error in $: Incompatible API versions: encoded with [1,20] but attempted to decode with [1,17,5,4].
CallStack (from HasCallStack):
  error, called at ./Text/Pandoc/JSON.hs:111:48 in pandoc-types-1.17.5.4-5tHZ3B61A58JaKOMxwGQR4:Text.Pandoc.JSON
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'PARAFAC_analysis_of_EEM.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building 'PARAFAC_analysis_of_EEM.Rmd'

SUMMARY: processing the following files failed:
  'Basic_analysis_of_DOM_samples.Rmd' 'PARAFAC_analysis_of_EEM.Rmd'

Error: Vignette re-building failed.
Execution halted