Error(s) in re-building vignettes:
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--- re-building 'mapmisc.Rnw' using knitr
Loading required package: sp
Loading required package: raster
map images will be cached in  /tmp/RtmpCU4qiS/mapmiscCache
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--- re-building 'north.Rmd' using docco_linear
Quitting from lines 278-291 (north.Rmd) 
Error: processing vignette 'north.Rmd' failed with diagnostics:
cannot do this transformation
--- failed re-building 'north.Rmd'

make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mapmisc.Rcheck/vign_test/mapmisc/vignettes'
pandoc --self-contained --to=html5 --css=http://diseasemapping.r-forge.r-project.org/webpage.css --output=north.html north.md	
[WARNING] This document format requires a nonempty <title> element.
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  To specify a title, use 'title' in metadata or --metadata title="...".
xelatex -interaction=nonstopmode mapmisc.tex;
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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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7 +lat_ts=0 +lon_0=0

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in rgdal::rawTransform(projfrom, projto, nrow(xy),
 xy[, 1], xy[, :

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline 
= "NO"): Discarded
[2] [3] [4] [5] [6] [7] [8] [9] [10] [11]
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[]\TU/lmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.3876388
8888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"[]
 

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s lost in output[] 

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[]\TU/lmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.3876388
8888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"[]
 
[12]
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[]\TU/lmr/m/n/12 Maps which can be downloaded are shown at []$[][][][] [] [] []
 [][][][][][][][][][][][][][] [] [][][][][][][][] [] [][][][][][][][][][] []

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[]\TU/lmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.387638
88888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"[
] 

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s lost in output[] 

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= "NO"): Discarded

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(meuse): CRS object has comment, whi
ch is lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(meuse): Discarded datum Unknown bas
ed on Bessel 1841

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(xpoints, crsLL): NULL target CRS co
mment, falling back

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(xpoints, crsLL): NULL target CRS co
mment, falling back

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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s lost in output[] 

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= "NO"): Discarded

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(meuse): CRS object has comment, whi
ch is lost in output[] 

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ed on Bessel 1841

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mment, falling back

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= "NO"): Discarded

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mment, falling back

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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s lost in output[] 

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= "NO"): Discarded

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= "NO"): Discarded

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[][]\TU/lmtt/b/n/12 plot[][]\TU/lmtt/m/n/12 (nldElev,[][]add[][]=[][]TRUE[][],[
][]col[][]=[][]\TU/lmtt/b/n/12 terrain.colors[][]\TU/lmtt/m/n/12 ([][]8[][]),[]
[]alpha[][]=[][]0.6[][],[][]legend.mar[][]=[][]2[][],[] []legend.line[][]=[][]0
[][],)[][] 

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(crs): CRS object has comment, which
 is lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(crs): Discarded datum Unknown based
 on Bessel 1841

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(xpoints, crsLL): NULL target CRS co
mment, falling back

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(xpoints, crsLL): NULL target CRS co
mment, falling back

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded
[13] [14] [15] [16]
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s lost in output[] 

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= "NO"): Discarded

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): Discarded datum Unknown based o
n Bessel 1841 ellipsoid

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): Discarded datum Unknown based o
n Bessel 1841 ellipsoid

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[]\TU/lmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline 
= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline 
= "NO"): Discarded
[17] [18]
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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline 
= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(theCentre, crsLL): NULL target CRS 
comment, falling

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(theCentreSp, qq): NULL source CRS c
omment, falling

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline 
= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline 
= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in rgdal::rawTransform(projfrom, projto, nrow(xy),
 xy[, 1], xy[, :

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s lost in output[] 

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s lost in output[] 

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 xy[, 1], xy[, :

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xy), xy[, 1], : Using

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= "NO"): Discarded

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xy), xy[, 1], : Using

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= "NO"): Discarded

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s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(xSP, CRSobj, ...): NULL source CRS 
comment, falling
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29]
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 on WGS84 ellipsoid

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mment, falling back

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mment, falling back

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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s lost in output[] 

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= "NO"): Discarded

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= "NO"): Discarded

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which is lost in

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based on WGS84 ellipsoid

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= "NO"): Discarded

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[30] [31]
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, falling back to

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[44] [45] [46] [47] [48] [49] (./mapmisc.aux)

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(see the transcript file for additional information)
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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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7 +lat_ts=0 +lon_0=0

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in rgdal::rawTransform(projfrom, projto, nrow(xy),
 xy[, 1], xy[, :

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline 
= "NO"): Discarded
[2] [3] [4] [5] [6] [7] [8] [9] [10] [11]
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[]\TU/lmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.3876388
8888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"[]
 

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s lost in output[] 

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[]\TU/lmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.3876388
8888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"[]
 
[12]
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[]\TU/lmr/m/n/12 Maps which can be downloaded are shown at []$[][][][] [] [] []
 [][][][][][][][][][][][][][] [] [][][][][][][][] [] [][][][][][][][][][] []

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[]\TU/lmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.387638
88888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"[
] 

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s lost in output[] 

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= "NO"): Discarded

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(meuse): CRS object has comment, whi
ch is lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(meuse): Discarded datum Unknown bas
ed on Bessel 1841

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(xpoints, crsLL): NULL target CRS co
mment, falling back

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(xpoints, crsLL): NULL target CRS co
mment, falling back

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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s lost in output[] 

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= "NO"): Discarded

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= "NO"): Discarded

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ch is lost in output[] 

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ed on Bessel 1841

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mment, falling back

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= "NO"): Discarded

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mment, falling back

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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s lost in output[] 

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= "NO"): Discarded

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= "NO"): Discarded

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[][]\TU/lmtt/b/n/12 plot[][]\TU/lmtt/m/n/12 (nldElev,[][]add[][]=[][]TRUE[][],[
][]col[][]=[][]\TU/lmtt/b/n/12 terrain.colors[][]\TU/lmtt/m/n/12 ([][]8[][]),[]
[]alpha[][]=[][]0.6[][],[][]legend.mar[][]=[][]2[][],[] []legend.line[][]=[][]0
[][],)[][] 

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(crs): CRS object has comment, which
 is lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(crs): Discarded datum Unknown based
 on Bessel 1841

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mment, falling back

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= "NO"): Discarded

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mment, falling back

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded
[13] [14] [15] [16]
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s lost in output[] 

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= "NO"): Discarded

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): Discarded datum Unknown based o
n Bessel 1841 ellipsoid

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): Discarded datum Unknown based o
n Bessel 1841 ellipsoid

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= "NO"): Discarded

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= "NO"): Discarded
[17] [18]
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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline 
= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(theCentre, crsLL): NULL target CRS 
comment, falling

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(theCentreSp, qq): NULL source CRS c
omment, falling

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline 
= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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[]\TU/lmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline 
= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(x, crsOut): NULL target CRS comment
, falling back to

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= "NO"): Discarded

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\TU/lmtt/m/n/12 ellps WGS 84 in CRS definition: +proj=merc +a=6378137 +b=637813
7 +lat_ts=0 +lon_0=0

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in rgdal::rawTransform(projfrom, projto, nrow(xy),
 xy[, 1], xy[, :

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which i
s lost in output[] 

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= "NO"): Discarded

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s lost in output[] 

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= "NO"): Discarded

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= "NO"): Discarded

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 xy[, 1], xy[, :

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= "NO"): Discarded

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xy), xy[, 1], : Using

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= "NO"): Discarded

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= "NO"): Discarded

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xy), xy[, 1], : Using

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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s lost in output[] 

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= "NO"): Discarded

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[]\TU/lmtt/m/n/12 ## Warning in spTransform(xSP, CRSobj, ...): NULL source CRS 
comment, falling
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29]
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s lost in output[] 

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= "NO"): Discarded

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= "NO"): Discarded

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 is lost in output[] 

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 on WGS84 ellipsoid

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mment, falling back

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= "NO"): Discarded

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mment, falling back

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= "NO"): Discarded

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= "NO"): Discarded

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= "NO"): Discarded

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s lost in output[] 

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= "NO"): Discarded

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= "NO"): Discarded

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which is lost in

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[]\TU/lmtt/m/n/12 ## Warning in proj4string(meuseRot): Discarded datum Unknown 
based on WGS84 ellipsoid

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mment, falling back

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= "NO"): Discarded

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mment, falling back

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= "NO"): Discarded

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= "NO"): Discarded
[30] [31]
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, falling back to

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= "NO"): Discarded

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= "NO"): Discarded

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[44] [45] [46] [47] [48] [49] (./mapmisc.aux) )
(see the transcript file for additional information)
Output written on mapmisc.pdf (49 pages).
Transcript written on mapmisc.log.
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