Error(s) in re-building vignettes:
--- re-building 'mapmisc.Rnw' using knitr
Loading required package: sp
Loading required package: raster
map images will be cached in  D:\temp\RtmpcxXjk3/mapmiscCache
--- finished re-building 'mapmisc.Rnw'

--- re-building 'north.Rmd' using docco_linear
Quitting from lines 278-291 (north.Rmd) 
Error: processing vignette 'north.Rmd' failed with diagnostics:
cannot do this transformation
--- failed re-building 'north.Rmd'

make[1]: Entering directory '/d/RCompile/CRANpkg/local/4.1/mapmisc.Rcheck/vign_test/mapmisc/vignettes'
pandoc --self-contained --to=html5 --css=http://diseasemapping.r-forge.r-project.org/webpage.css --output=north.html north.md	
xelatex -interaction=nonstopmode mapmisc.tex;
This is XeTeX, Version 3.14159265-2.6-0.99992 (MiKTeX 2.9)
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 = "NO"): Discarded

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 = "NO"): Discarded

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 = "NO"): Discarded

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in rgdal::rawTransform(projfrom, projto, nrow(xy)
, xy[, 1], xy[, :

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded
[2] [3] [4] [5] [6] [7] [8] [9] [10] [11]
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[]\OT1/cmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.387638
88888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"[
] 

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is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.387638
88888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"[
] 
[12]
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[]\OT1/cmr/m/n/12 Maps which can be down-loaded are shown at []$\OT1/cmtt/m/n/1
2 http : / / diseasemapping . r-[]forge . r-[]project .

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[]\OT1/cmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763
888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"
[] 

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is lost in output[] 

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(meuse): CRS object has comment, wh
ich is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(meuse): Discarded datum Unknown ba
sed on Bessel 1841

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[]\OT1/cmtt/m/n/12 ## Warning in spTransform(xpoints, crsLL): NULL target CRS c
omment, falling back

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 = "NO"): Discarded

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omment, falling back

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 = "NO"): Discarded

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is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(meuse): CRS object has comment, wh
ich is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(meuse): Discarded datum Unknown ba
sed on Bessel 1841

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omment, falling back

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 = "NO"): Discarded

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omment, falling back

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 = "NO"): Discarded

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 = "NO"): Discarded

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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 = "NO"): Discarded

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 = "NO"): Discarded

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[][]\OT1/cmtt/m/n/12 plot[][](nldElev,[][]add[][]=[][]TRUE[][],[][]col[][]=[][]
terrain.colors[][]([][]8[][]),[][]alpha[][]=[][]0.6[][],[][]legend.mar[][]=[][]
2[][],[] []legend.line[][]=[][]0[][],)[][] 

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 = "NO"): Discarded

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(crs): CRS object has comment, whic
h is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(crs): Discarded datum Unknown base
d on Bessel 1841

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[]\OT1/cmtt/m/n/12 ## Warning in spTransform(xpoints, crsLL): NULL target CRS c
omment, falling back

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 = "NO"): Discarded

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omment, falling back

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded
[13] [14] [15] <use  "figure/simpleMap-1.png" >
<use  "figure/simpleMap-2.png" > <use  "figure/simpleMap-3.png" > [16]
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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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 = "NO"): Discarded

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): Discarded datum Unknown based 
on Bessel 1841 ellipsoid

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): Discarded datum Unknown based 
on Bessel 1841 ellipsoid

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded
[17] <use  "figure/meuseLegends-1.png" > <use  "figure/meuseLegends-2.png" >
<use  "figure/meuseLegends-3.png" > [18]
(\RCompile\recent\R\share\texmf\tex\latex\omscmtt.fd)
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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in spTransform(theCentre, crsLL): NULL target CRS
 comment, falling

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in spTransform(theCentreSp, qq): NULL source CRS 
comment, falling

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in spTransform(x, crsOut): NULL target CRS commen
t, falling back to

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 = "NO"): Discarded

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, xy[, 1], xy[, :

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is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in spTransform(xSP, CRSobj, ...): NULL source CRS
 comment, falling
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29]
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d on WGS84 ellipsoid

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 based on WGS84 ellipsoid

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[30] [31] <use  "figure/rotatedMap-1.png" > <use  "figure/rotatedMap-2.png" >
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[32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43]
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ich is lost in output[] 

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sed on Bessel 1841

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is lost in output[] 

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 which is lost in

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(meuseRot): Discarded datum Unknown
 based on WGS84 ellipsoid

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is lost in output[] 

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, xy[, 1], xy[, :

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, xy[, 1], xy[, :

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 = "NO"): Discarded

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 = "NO"): Discarded

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 = "NO"): Discarded

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 = "NO"): Discarded

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[44] [45] [46] [47] <use  "figure/inset-1.png" > <use  "figure/inset-2.png" >
[48] [49] (mapmisc.aux)

LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.

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(see the transcript file for additional information)
Output written on mapmisc.pdf (49 pages).
Transcript written on mapmisc.log.
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 = "NO"): Discarded

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 = "NO"): Discarded

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 = "NO"): Discarded

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in rgdal::rawTransform(projfrom, projto, nrow(xy)
, xy[, 1], xy[, :

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded
[2] [3] [4] [5] [6] [7] [8] [9] [10] [11]
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[]\OT1/cmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.387638
88888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"[
] 

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is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.387638
88888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"[
] 
[12]
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[]\OT1/cmr/m/n/12 Maps which can be down-loaded are shown at []$\OT1/cmtt/m/n/1
2 http : / / diseasemapping . r-[]forge . r-[]project .

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[]\OT1/cmtt/m/n/12 ## [1] "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763
888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs"
[] 

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is lost in output[] 

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(meuse): CRS object has comment, wh
ich is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(meuse): Discarded datum Unknown ba
sed on Bessel 1841

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[]\OT1/cmtt/m/n/12 ## Warning in spTransform(xpoints, crsLL): NULL target CRS c
omment, falling back

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 = "NO"): Discarded

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is lost in output[] 

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ich is lost in output[] 

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sed on Bessel 1841

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omment, falling back

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 = "NO"): Discarded

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omment, falling back

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 = "NO"): Discarded

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 = "NO"): Discarded

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 = "NO"): Discarded

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is lost in output[] 

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 = "NO"): Discarded

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 = "NO"): Discarded

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[][]\OT1/cmtt/m/n/12 plot[][](nldElev,[][]add[][]=[][]TRUE[][],[][]col[][]=[][]
terrain.colors[][]([][]8[][]),[][]alpha[][]=[][]0.6[][],[][]legend.mar[][]=[][]
2[][],[] []legend.line[][]=[][]0[][],)[][] 

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(crs): CRS object has comment, whic
h is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(crs): Discarded datum Unknown base
d on Bessel 1841

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[]\OT1/cmtt/m/n/12 ## Warning in spTransform(xpoints, crsLL): NULL target CRS c
omment, falling back

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 = "NO"): Discarded

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omment, falling back

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded
[13] [14] [15] <use  "figure/simpleMap-1.png" >
<use  "figure/simpleMap-2.png" > <use  "figure/simpleMap-3.png" > [16]
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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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 = "NO"): Discarded

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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): Discarded datum Unknown based 
on Bessel 1841 ellipsoid

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): Discarded datum Unknown based 
on Bessel 1841 ellipsoid

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded
[17] <use  "figure/meuseLegends-1.png" > <use  "figure/meuseLegends-2.png" >
<use  "figure/meuseLegends-3.png" > [18]
(\RCompile\recent\R\share\texmf\tex\latex\omscmtt.fd)
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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in spTransform(theCentre, crsLL): NULL target CRS
 comment, falling

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in spTransform(theCentreSp, qq): NULL source CRS 
comment, falling

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in showSRID(uprojargs, format = "PROJ", multiline
 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in spTransform(x, crsOut): NULL target CRS commen
t, falling back to

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 = "NO"): Discarded

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\OT1/cmtt/m/n/12 ellps WGS 84 in CRS definition: +proj=merc +a=6378137 +b=63781
37 +lat[]ts=0 +lon[]0=0

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[]\OT1/cmtt/m/n/12 ## Warning in rgdal::rawTransform(projfrom, projto, nrow(xy)
, xy[, 1], xy[, :

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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is lost in output[] 

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(xy), xy[, 1], : Using

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w(xy), xy[, 1], : Using

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is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in spTransform(xSP, CRSobj, ...): NULL source CRS
 comment, falling
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29]
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h is lost in output[] 

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d on WGS84 ellipsoid

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omment, falling back

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omment, falling back

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 which is lost in

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(meuseRot): Discarded datum Unknown
 based on WGS84 ellipsoid

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[30] [31] <use  "figure/rotatedMap-1.png" > <use  "figure/rotatedMap-2.png" >
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[32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43]
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sed on Bessel 1841

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is lost in output[] 

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 which is lost in

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 based on WGS84 ellipsoid

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is lost in output[] 

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, xy[, 1], xy[, :

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, xy[, 1], xy[, :

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 = "NO"): Discarded

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 = "NO"): Discarded

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\OT1/cmtt/m/n/12 ellps WGS 84 in CRS definition: +proj=merc +a=6378137 +b=63781
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 = "NO"): Discarded

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 

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[]\OT1/cmtt/m/n/12 ## Warning in proj4string(x): CRS object has comment, which 
is lost in output[] 
[44] [45] [46] [47] <use  "figure/inset-1.png" > <use  "figure/inset-2.png" >
[48] [49] (mapmisc.aux) )
(see the transcript file for additional information)
Output written on mapmisc.pdf (49 pages).
Transcript written on mapmisc.log.
make[1]: Leaving directory '/d/RCompile/CRANpkg/local/4.1/mapmisc.Rcheck/vign_test/mapmisc/vignettes'
make[1]: Entering directory '/d/RCompile/CRANpkg/local/4.1/mapmisc.Rcheck/vign_test/mapmisc/vignettes'
rm -rf *.md *.tex *.toc *.bbl *.blg *.aux *.out *.log *.spl *tikzDictionary *.md figure/ cache/ *.dvi *.4* *.css *.idv *.lg *.tmp *.xref *.gz my*.bib *.nav *.xml *.vrb *.snm 
make[1]: Leaving directory '/d/RCompile/CRANpkg/local/4.1/mapmisc.Rcheck/vign_test/mapmisc/vignettes'
SUMMARY: processing the following file failed:
  'north.Rmd'

Error: Vignette re-building failed.
Execution halted