Error(s) in re-building vignettes:
--- re-building ‘rodeoVignette.Rmd’ using rmarkdown
make[1]: Entering directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a438a25c50.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a438a25c50.o
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a438a25c50.f95:59:20:

   59 | subroutine drvs(time, var, par, NBOX, dydt, pro)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a418731740.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a418731740.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a448d87ea8.so /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a438a25c50.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a418731740.o -lgfortran -lm -lquadmath
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a45ae0e05.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a45ae0e05.o
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a45ae0e05.f95:77:20:

   77 | subroutine drvs(time, var, par, NBOX, dydt, pro)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a462edcf8a.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a462edcf8a.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a41809f6fb.so /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a45ae0e05.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a462edcf8a.o -lgfortran -lm -lquadmath
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a445fbe91a.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a445fbe91a.o
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a445fbe91a.f95:53:20:

   53 | subroutine drvs(time, var, par, NBOX, dydt, pro)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a4316d0b80.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a4316d0b80.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a42e83a78e.so /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a445fbe91a.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a4316d0b80.o -lgfortran -lm -lquadmath
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.o
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95:14:20:

   14 |   function cDn (time) result (r)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95:8:20:

    8 |   function cUp (time) result (r)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a431fc1d2a.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a431fc1d2a.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a47def72b6.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a47def72b6.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a479d4963.so /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a431fc1d2a.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a47def72b6.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.o
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95:23:38:

   23 |   double precision function hRiv (time)
      |                                      1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95:18:37:

   18 |   double precision function rch (time)
      |                                     1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a458ae96ea.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a458ae96ea.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a43d05b08d.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a43d05b08d.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a432084473.so /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a458ae96ea.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a43d05b08d.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a461134811.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a461134811.o
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a461134811.f95:159:20:

  159 | subroutine drvs(time, var, par, NBOX, dydt, pro)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a450cadfc2.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a450cadfc2.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a41a78dac2.so /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a461134811.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a450cadfc2.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:18:18:

   18 | function sInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:12:18:

   12 | function xInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:6:15:

    6 | function q(time) result (res)
      |               1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a4742551ad.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a4742551ad.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a45fe44d70.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a45fe44d70.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a456279ce2.so /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a4742551ad.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rodeo96a45fe44d70.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4169c9a57.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4169c9a57.o
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4169c9a57.f95:269:11:

  269 | integer:: i
      |           1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4169c9a57.f95:301:0:

  301 |   if (abs(hnext) .lt. hmin) then
      | 
Warning: ‘hnext’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:18:18:

   18 | function sInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:12:18:

   12 | function xInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:6:15:

    6 | function q(time) result (res)
      |               1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4763c1f1b.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4763c1f1b.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4768cdae5.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4768cdae5.o
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4768cdae5.f95:18:43:

   18 |       double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                           1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4768cdae5.f95:19:43:

   19 |       double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                           1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4768cdae5.f95:30:46:

   30 |   subroutine derivs_wrapped(t,u,par,dudt,error)
      |                                              1
Warning: Dummy argument ‘error’ at (1) was declared INTENT(OUT) but was not set [-Wunused-dummy-argument]
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rk596a43115751a.so /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4169c9a57.o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4763c1f1b.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a4768cdae5.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
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make[1]: Leaving directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
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make[1]: Entering directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a448c62d24.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a448c62d24.o
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a448c62d24.f95:269:11:

  269 | integer:: i
      |           1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a448c62d24.f95:301:0:

  301 |   if (abs(hnext) .lt. hmin) then
      | 
Warning: ‘hnext’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:18:18:

   18 | function sInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:12:18:

   12 | function xInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:6:15:

    6 | function q(time) result (res)
      |               1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a45a36ffc8.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a45a36ffc8.o
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a45a36ffc8.f95:64:22:

   64 | subroutine derivs(time, var, par, NBOX, dydt, pro)
      |                      1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a47d8a6d06.f95 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a47d8a6d06.o
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a47d8a6d06.f95:18:43:

   18 |       double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                           1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a47d8a6d06.f95:19:43:

   19 |       double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                           1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a47d8a6d06.f95:30:46:

   30 |   subroutine derivs_wrapped(t,u,par,dudt,error)
      |                                              1
Warning: Dummy argument ‘error’ at (1) was declared INTENT(OUT) but was not set [-Wunused-dummy-argument]
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/rk596a4193fade3.so /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a448c62d24.o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a45a36ffc8.o /tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr/file96a47d8a6d06.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
make[1]: Entering directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
make[1]: Leaving directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
make[1]: Entering directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
make[1]: Leaving directory '/tmp/RtmpOsd6Z7/working_dir/RtmpsX7lTr'
! LaTeX Error: Environment htmlTableBackground undefined.

Error: processing vignette 'rodeoVignette.Rmd' failed with diagnostics:
LaTeX failed to compile /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/rodeoVignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See rodeoVignette.log for more info.
--- failed re-building ‘rodeoVignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rodeoVignette.Rmd’

Error: Vignette re-building failed.
Execution halted