Error(s) in re-building vignettes:
--- re-building ‘rodeoVignette.Rmd’ using rmarkdown
make[1]: Entering directory '/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU'
make[1]: Leaving directory '/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU'
make[1]: Entering directory '/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU'
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.f95 -o /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f545f0ad2f8.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f545f0ad2f8.o
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f545f0ad2f8.f95:59:20:

   59 | subroutine drvs(time, var, par, NBOX, dydt, pro)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5478379624.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5478379624.o
clang -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f542b61ec26.so /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f545f0ad2f8.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5478379624.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5468099a82.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5468099a82.o
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5468099a82.f95:77:20:

   77 | subroutine drvs(time, var, par, NBOX, dydt, pro)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f549432891.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f549432891.o
clang -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f54111da41b.so /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5468099a82.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f549432891.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f546f5d158a.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f546f5d158a.o
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f546f5d158a.f95:53:20:

   53 | subroutine drvs(time, var, par, NBOX, dydt, pro)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f541eb0e9a.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f541eb0e9a.o
clang -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f546fe82f1f.so /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f546f5d158a.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f541eb0e9a.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95 -o /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.o
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95:14:20:

   14 |   function cDn (time) result (r)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95:8:20:

    8 |   function cUp (time) result (r)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5462697b3b.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5462697b3b.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5469904eab.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5469904eab.o
clang -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f54147fa35d.so /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5462697b3b.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5469904eab.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95 -o /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.o
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95:23:38:

   23 |   double precision function hRiv (time)
      |                                      1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95:18:37:

   18 |   double precision function rch (time)
      |                                     1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5478a9e5a1.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5478a9e5a1.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f543c2aa337.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f543c2aa337.o
clang -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f546495cb6e.so /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5478a9e5a1.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f543c2aa337.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.f95 -o /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f54712237ec.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f54712237ec.o
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f54712237ec.f95:159:20:

  159 | subroutine drvs(time, var, par, NBOX, dydt, pro)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5438807e70.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5438807e70.o
clang -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f547a3ebce0.so /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f54712237ec.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5438807e70.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95 -o /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:18:18:

   18 | function sInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:12:18:

   12 | function xInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:6:15:

    6 | function q(time) result (res)
      |               1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5433dc4a75.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5433dc4a75.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5420680649.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5420680649.o
clang -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f547fef0d76.so /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5433dc4a75.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rodeo4f5420680649.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f546b6736f.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f546b6736f.o
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f546b6736f.f95:269:11:

  269 | integer:: i
      |           1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f546b6736f.f95:301:0:

  301 |   if (abs(hnext) .lt. hmin) then
      | 
Warning: ‘hnext’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95 -o /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:18:18:

   18 | function sInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:12:18:

   12 | function xInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:6:15:

    6 | function q(time) result (res)
      |               1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f542bce42dc.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f542bce42dc.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f54b0007d8.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f54b0007d8.o
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f54b0007d8.f95:18:43:

   18 |       double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                           1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f54b0007d8.f95:19:43:

   19 |       double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                           1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f54b0007d8.f95:30:46:

   30 |   subroutine derivs_wrapped(t,u,par,dudt,error)
      |                                              1
Warning: Dummy argument ‘error’ at (1) was declared INTENT(OUT) but was not set [-Wunused-dummy-argument]
clang -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rk54f54f5304f.so /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f546b6736f.o /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f542bce42dc.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f54b0007d8.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f543be2aab8.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f543be2aab8.o
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f543be2aab8.f95:269:11:

  269 | integer:: i
      |           1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f543be2aab8.f95:301:0:

  301 |   if (abs(hnext) .lt. hmin) then
      | 
Warning: ‘hnext’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95 -o /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:18:18:

   18 | function sInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:12:18:

   12 | function xInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:6:15:

    6 | function q(time) result (res)
      |               1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f5452e9ef4a.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f5452e9ef4a.o
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f5452e9ef4a.f95:64:22:

   64 | subroutine derivs(time, var, par, NBOX, dydt, pro)
      |                      1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f545d9d686a.f95 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f545d9d686a.o
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f545d9d686a.f95:18:43:

   18 |       double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                           1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f545d9d686a.f95:19:43:

   19 |       double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                           1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f545d9d686a.f95:30:46:

   30 |   subroutine derivs_wrapped(t,u,par,dudt,error)
      |                                              1
Warning: Dummy argument ‘error’ at (1) was declared INTENT(OUT) but was not set [-Wunused-dummy-argument]
clang -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/rk54f543587613f.so /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f543be2aab8.o /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f5452e9ef4a.o /tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU/file4f545d9d686a.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpDtAvV2/working_dir/Rtmpr0PzOU'
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! LaTeX Error: Environment htmlTableBackground undefined.

Error: processing vignette 'rodeoVignette.Rmd' failed with diagnostics:
LaTeX failed to compile /data/gannet/ripley/R/packages/tests-clang/rodeo.Rcheck/vign_test/rodeo/vignettes/rodeoVignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See rodeoVignette.log for more info.
--- failed re-building ‘rodeoVignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rodeoVignette.Rmd’

Error: Vignette re-building failed.
Execution halted