Found the following significant warnings:
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/available-algorithms.Rd:17: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/available-algorithms.Rd:54: file link ‘optimizing’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/kfold.stanreg.Rd:26: file link ‘kfold_split_random’ in package ‘loo’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/kfold.stanreg.Rd:48: file link ‘parLapply’ in package ‘parallel’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/launch_shinystan.stanreg.Rd:29: file link ‘pp_check’ in package ‘rstanarm’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/loo.stanreg.Rd:107: file link ‘plot.loo’ in package ‘loo’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/model.frame.stanmvreg.Rd:12: file link ‘model.frame.merMod’ in package ‘lme4’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/model.frame.stanreg.Rd:12: file link ‘model.frame.merMod’ in package ‘lme4’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/neg_binomial_2.Rd:16: file link ‘poisson’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/pairs.stanreg.Rd:58: file link ‘mcmc_pairs’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/pairs.stanreg.Rd:33: file link ‘mcmc_pairs’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/pairs.stanreg.Rd:45: file link ‘mcmc_pairs’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/pairs.stanreg.Rd:47: file link ‘mcmc_pairs’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/pairs.stanreg.Rd:55: file link ‘mcmc_pairs’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/plot.stanreg.Rd:42: file link ‘MCMC’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/plot.stanreg.Rd:14: file link ‘MCMC’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/plot.stanreg.Rd:15: file link ‘mcmc_intervals’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/plot.stanreg.Rd:19: file link ‘available_mcmc’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/plot.stanreg.Rd:33: file link ‘mcmc_intervals’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/plot.stanreg.Rd:163: file link ‘color_scheme_set’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/plot.survfit.stanjm.Rd:48: file link ‘geom_line’ in package ‘ggplot2’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/posterior_vs_prior.Rd:27: file link ‘geom_pointrange’ in package ‘ggplot2’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/posterior_vs_prior.Rd:76: file link ‘scale_color_manual’ in package ‘ggplot2’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/posterior_vs_prior.Rd:77: file link ‘scale_color_brewer’ in package ‘ggplot2’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/pp_check.stanreg.Rd:47: file link ‘PPC’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/pp_check.stanreg.Rd:15: file link ‘PPC’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/pp_check.stanreg.Rd:16: file link ‘ppc_dens_overlay’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/pp_check.stanreg.Rd:60: file link ‘ppc_error_binned’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/pp_check.stanreg.Rd:146: file link ‘color_scheme_set’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/pp_validate.Rd:84: file link ‘color_scheme_set’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/ps_check.Rd:48: file link ‘geom_line’ in package ‘ggplot2’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/rstanarm-package.Rd:28: file link ‘bayesplot’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/rstanarm-package.Rd:145: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/rstanarm-package.Rd:182: file link ‘optimizing’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_betareg.Rd:81: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_betareg.Rd:81: file link ‘vb’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_betareg.Rd:82: file link ‘optimizing’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_biglm.Rd:54: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_biglm.Rd:54: file link ‘vb’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_biglm.Rd:55: file link ‘optimizing’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_clogit.Rd:32: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_clogit.Rd:32: file link ‘vb’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_clogit.Rd:33: file link ‘optimizing’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_gamm4.Rd:52: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_gamm4.Rd:54: file link ‘vb’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_gamm4.Rd:125: file link ‘rnbinom’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_gamm4.Rd:129: file link ‘rgamma’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_gamm4.Rd:242: file link ‘color_scheme_set’ in package ‘bayesplot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_glm.Rd:106: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_glm.Rd:106: file link ‘vb’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_glm.Rd:107: file link ‘optimizing’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_glm.Rd:168: file link ‘rnbinom’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_glm.Rd:172: file link ‘rgamma’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_glmer.Rd:86: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_glmer.Rd:87: file link ‘vb’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_glmer.Rd:148: file link ‘rnbinom’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_glmer.Rd:152: file link ‘rgamma’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_jm.Rd:252: file link ‘rnbinom’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_jm.Rd:256: file link ‘rgamma’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_jm.Rd:326: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_jm.Rd:326: file link ‘vb’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_jm.Rd:327: file link ‘optimizing’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_lm.Rd:81: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_lm.Rd:81: file link ‘vb’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_lm.Rd:82: file link ‘optimizing’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_lm.Rd:138: file link ‘lm.wfit’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_lm.Rd:165: file link ‘lm.fit’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_lm.Rd:166: file link ‘lm.wfit’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_mvmer.Rd:115: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_mvmer.Rd:115: file link ‘vb’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_mvmer.Rd:116: file link ‘optimizing’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_nlmer.Rd:39: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_nlmer.Rd:39: file link ‘vb’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_nlmer.Rd:40: file link ‘optimizing’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_nlmer.Rd:81: file link ‘rnbinom’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_nlmer.Rd:85: file link ‘rgamma’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_polr.Rd:56: file link ‘sampling’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_polr.Rd:56: file link ‘vb’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stan_polr.Rd:57: file link ‘optimizing’ in package ‘rstan’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stanreg-methods.Rd:109: file link ‘confint.default’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmptN8Wnq/R.INSTALL30363b4f563e/rstanarm/man/stanreg-objects.Rd:26: file link ‘stanfit’ in package ‘rstan’ does not exist and so has been treated as a topic
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rstanarm.Rcheck/00install.out’ for details.