Running ‘Rgui.R’ [0s/1s]
  Running ‘arules.R’ [2s/4s]
  Comparing ‘arules.Rout’ to ‘arules.Rout.save’ ... OK
  Running ‘idlists.R’ [2s/4s]
  Running ‘makebin.R’ [2s/3s]
  Comparing ‘makebin.Rout’ to ‘makebin.Rout.save’ ... OK
  Running ‘native.R’ [2s/3s]
  Comparing ‘native.Rout’ to ‘native.Rout.save’ ... OK
  Running ‘ptree.R’ [4s/6s]
  Running ‘similarity.R’ [2s/3s]
  Running ‘zaki.R’ [2s/4s]
Running the tests in ‘tests/idlists.R’ failed.
Complete output:
  > 
  > ### ceeboo 2015
  > 
  > library("arulesSequences")
  Loading required package: arules
  Loading required package: Matrix
  
  Attaching package: 'arules'
  
  The following objects are masked from 'package:base':
  
      abbreviate, write
  
  > 
  > .string2sequences <-
  + function(x) {
  +     x <- lapply(strsplit(x, split = " "), strsplit, split = "")
  +     x <- unlist(x, recursive = FALSE)
  +     as(x, "sequences")
  + }
  > 
  > ## repeating
  > t <- paste(
  +     1, 
  +     c(10, 15, 18, 19), 
  +     c("A", "A", "A", "A"),
  +     collapse = "\n"
  + )
  > t <- textConnection(t)
  > t <- read_baskets(t, info = c("sequenceID", "eventID"))
  Error in validObject(.Object) : 
    invalid class "ngCMatrix" object: invalid object for slot "i" in class "ngCMatrix": got class "logical", should be or extend class "integer"
  Calls: read_baskets ... initialize -> callNextMethod -> .nextMethod -> validObject
  In addition: Warning message:
  In Ops.factor(c(i), 1L) : '-' not meaningful for factors
  Execution halted
Running the tests in ‘tests/ptree.R’ failed.
Complete output:
  > 
  > ### ceeboo 2015
  > 
  > library("arulesSequences")
  Loading required package: arules
  Loading required package: Matrix
  
  Attaching package: 'arules'
  
  The following objects are masked from 'package:base':
  
      abbreviate, write
  
  > 
  > ## use example
  > data(zaki)
  > ## IGNORE_RDIFF_BEGIN
  > s7 <- cspade(zaki, parameter = list(support = .25), 
  + 	           control   = list(verbose = TRUE, tidLists = TRUE))
  
  parameter specification:
  support : 0.25
  maxsize :   10
  maxlen  :   10
  
  algorithmic control:
  bfstype  : FALSE
  verbose  :  TRUE
  summary  : FALSE
  tidLists :  TRUE
  
  preprocessing ... 1 partition(s), 0 MB [0.038s]
  mining transactions ... 0.11 MB [0.07s]
  reading sequences ... [2s]
  
  total elapsed time: 2.063s
  > ## IGNORE_RDIFF_END
  > 
  > ## IGNORE_RDIFF_BEGIN
  > k <- support(s7, zaki, control = list(verbose = TRUE))
  preprocessing ... Error in validObject(.Object) : 
    invalid class "ngCMatrix" object: invalid object for slot "i" in class "ngCMatrix": got class "logical", should be or extend class "integer"
  Calls: support ... initialize -> callNextMethod -> .nextMethod -> validObject
  In addition: Warning message:
  In Ops.factor(c(t), 1L) : '-' not meaningful for factors
  Execution halted
Running the tests in ‘tests/similarity.R’ failed.
Complete output:
  > 
  > library("arulesSequences")
  Loading required package: arules
  Loading required package: Matrix
  
  Attaching package: 'arules'
  
  The following objects are masked from 'package:base':
  
      abbreviate, write
  
  > 
  > ### ceeboo 2008, 2016
  > 
  > data(zaki)
  > 
  > z <- as(zaki, "timedsequences")
  Error in validObject(.Object) : 
    invalid class "ngCMatrix" object: invalid object for slot "i" in class "ngCMatrix": got class "logical", should be or extend class "integer"
  Calls: as ... initialize -> callNextMethod -> .nextMethod -> validObject
  In addition: Warning message:
  In Ops.factor(c(t), 1L) : '-' not meaningful for factors
  Execution halted
Running the tests in ‘tests/zaki.R’ failed.
Complete output:
  > 
  > library("arulesSequences")
  Loading required package: arules
  Loading required package: Matrix
  
  Attaching package: 'arules'
  
  The following objects are masked from 'package:base':
  
      abbreviate, write
  
  > 
  > ## basic tests using the small running 
  > ## example from the paper. 
  > ##
  > ## ceeboo 2007, 2014, 2015, 2016
  > 
  > ## data set
  > 
  > data(zaki)
  > 
  > zaki.txt <- 
  +     read_baskets(con  = system.file("misc", "zaki.txt", 
  +                                     package = "arulesSequences"),
  +                  info = c("sequenceID","eventID","SIZE"))
  Error in validObject(.Object) : 
    invalid class "ngCMatrix" object: invalid object for slot "i" in class "ngCMatrix": got class "logical", should be or extend class "integer"
  Calls: read_baskets ... initialize -> callNextMethod -> .nextMethod -> validObject
  In addition: Warning message:
  In Ops.factor(c(i), 1L) : '-' not meaningful for factors
  Execution halted