Found the following significant warnings:
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/aboot.Rd:68: file link ‘phylo’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/bruvo.msn.Rd:122: file link ‘minimum.spanning.tree’ in package ‘igraph’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/bruvo.msn.Rd:213: file link ‘minimum.spanning.tree’ in package ‘igraph’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/diversity_boot.Rd:21: file link ‘mlg.table’ in package ‘poppr’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/diversity_boot.Rd:103: file link ‘rmultinom’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/genclone-class.Rd:74: file link ‘strata’ in package ‘adegenet’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/genclone-class.Rd:74: file link ‘setPop’ in package ‘adegenet’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/genotype_curve.Rd:20: file link ‘loci’ in package ‘pegas’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/genotype_curve.Rd:61: file link ‘loci’ in package ‘pegas’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/make_haplotypes-method.Rd:19: file link ‘strata’ in package ‘adegenet’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/make_haplotypes-method.Rd:37: file link ‘other’ in package ‘adegenet’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/plot_poppr_msn.Rd:96: file link ‘layout.auto’ in package ‘igraph’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/plot_poppr_msn.Rd:285: file link ‘layout.auto’ in package ‘igraph’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/plot_poppr_msn.Rd:287: file link ‘delete.edges’ in package ‘igraph’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/poppr-package.Rd:18: file link ‘adegenet’ in package ‘adegenet’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/poppr-package.Rd:62: file link ‘adegenet’ in package ‘adegenet’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/poppr-package.Rd:91: file link ‘genind-class’ in package ‘adegenet’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/poppr-package.Rd:92: file link ‘genlight-class’ in package ‘adegenet’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/poppr-package.Rd:103: file link ‘gen-class’ in package ‘adegenet’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/poppr.Rd:37: file link ‘popNames’ in package ‘adegenet’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/poppr.msn.Rd:114: file link ‘minimum.spanning.tree’ in package ‘igraph’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/private_alleles.Rd:52: file link ‘strata’ in package ‘adegenet’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmp8GtSmm/R.INSTALL28266b6e6b43/poppr/man/read.genalex.Rd:55: file link ‘splitStrata’ in package ‘adegenet’ does not exist and so has been treated as a topic
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/poppr.Rcheck/00install.out’ for details.