Found the following significant warnings:
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/ArrayParameter-class.Rd:38: file link ‘shiny’ in package ‘shiny’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/ArrayParameter-class.Rd:92: file link ‘shiny’ in package ‘shiny’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/Collection-class.Rd:83: file link ‘div’ in package ‘shiny’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/MiscParameter-class.Rd:75: file link ‘shiny’ in package ‘shiny’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/Parameter-class.Rd:34: file link ‘shiny’ in package ‘shiny’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/Parameters-class.Rd:85: file link ‘div’ in package ‘shiny’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/ProjectModifier-class.Rd:123: file link ‘div’ in package ‘shiny’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/ProjectProblem-class.Rd:215: file link ‘phylo’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/ScalarParameter-class.Rd:33: file link ‘shiny’ in package ‘shiny’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/ScalarParameter-class.Rd:83: file link ‘shiny’ in package ‘shiny’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/add_max_phylo_div_objective.Rd:14: file link ‘phylo’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/branch_matrix.Rd:16: file link ‘phylo’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/pipe.Rd:30: file link ‘%>%’ in package ‘magrittr’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/plot_feature_persistence.Rd:38: file link ‘tbl_df’ in package ‘tibble’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/scalar_parameters.Rd:42: file link ‘shiny’ in package ‘shiny’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/sim_data.Rd:15: file link ‘phylo’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/sim_data.Rd:98: file link ‘phylo’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/simulate_ppp_data.Rd:172: file link ‘rcoal’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/simulate_ppp_data.Rd:123: file link ‘phylo’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/simulate_ptm_data.Rd:181: file link ‘rcoal’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/simulate_ptm_data.Rd:130: file link ‘phylo’ in package ‘ape’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpjL9N2s/R.INSTALL9c73cb657c5/oppr/man/tee.Rd:36: file link ‘%T>%’ in package ‘magrittr’ does not exist and so has been treated as a topic
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/oppr.Rcheck/00install.out’ for details.