Found the following significant warnings:
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/Restructuring_AbstractCBS_objects.Rd:24: file link ‘extractChromosomes.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/Restructuring_AbstractCBS_objects.Rd:25: file link ‘extractChromosome.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/Restructuring_AbstractCBS_objects.Rd:28: file link ‘extractSegments.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/Restructuring_AbstractCBS_objects.Rd:29: file link ‘extractSegment.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/Restructuring_AbstractCBS_objects.Rd:32: file link ‘extractRegions.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/Restructuring_AbstractCBS_objects.Rd:33: file link ‘extractRegion.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/Restructuring_AbstractCBS_objects.Rd:39: file link ‘dropRegion.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/Restructuring_AbstractCBS_objects.Rd:43: file link ‘dropChangePoint.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/as.data.frame.CBS.Rd:36: file link ‘getSegments.CBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/callAllelicBalanceByDH.PairedPSCBS.Rd:53: file link ‘callAllelicBalance.PairedPSCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/callCopyNeutralByTCNofAB.PairedPSCBS.Rd:38: file link ‘calcStatsForCopyNeutralABs.PairedPSCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/callLOH.PairedPSCBS.Rd:62: file link ‘callLowC1ByC1.PairedPSCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/callLOH.PairedPSCBS.Rd:63: file link ‘callExtremeAllelicImbalanceByDH.PairedPSCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/dropChangePoints.AbstractCBS.Rd:18: file link ‘dropChangePoint.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/dropChangePoints.AbstractCBS.Rd:31: file link ‘dropChangePoint.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/dropRegions.AbstractCBS.Rd:34: file link ‘extractRegions.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/dropRegions.AbstractCBS.Rd:50: file link ‘extractRegions.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/dropRegions.AbstractCBS.Rd:51: file link ‘dropChangePoint.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/estimateDeltaAB.PairedPSCBS.Rd:45: file link ‘estimateStdDevForHeterozygousBAF.PairedPSCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/estimateDeltaAB.PairedPSCBS.Rd:46: file link ‘estimateMeanForDH.PairedPSCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/estimateDeltaAB.PairedPSCBS.Rd:47: file link ‘estimateHighDHQuantileAtAB.PairedPSCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/estimateDeltaCN.PairedPSCBS.Rd:43: file link ‘estimateKappa’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/estimateDeltaLOHByMinC1ForNonAB.PairedPSCBS.Rd:44: file link ‘callAllelicBalance.PairedPSCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/extractSegmentMeansByLocus.CBS.Rd:26: file link ‘getLocusData.CBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/hclustCNs.AbstractCBS.Rd:27: file link ‘sampleCNs.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/pruneByDP.AbstractCBS.Rd:30: file link ‘seqOfSegmentsByDP.AbstractCBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/randomSeed.Rd:30: file link ‘RNGkind’ in package ‘base’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/Rtmpmho3zB/R.INSTALL282953bade2f/PSCBS/man/writeSegments.CBS.Rd:48: file link ‘getSegments.CBS’ in package ‘PSCBS’ does not exist and so has been treated as a topic
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PSCBS.Rcheck/00install.out’ for details.