Found the following significant warnings:
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/Plot.Rd:55: file link ‘gpar’ in package ‘quickPlot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/SpaDES.core-package.Rd:308: file link ‘setColors<-’ in package ‘quickPlot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/SpaDES.core-package.Rd:378: file link ‘Cache’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/SpaDES.core-package.Rd:380: file link ‘showCache’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/SpaDES.core-package.Rd:381: file link ‘clearCache’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/SpaDES.core-package.Rd:382: file link ‘keepCache’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/addChangedAttr.Rd:28: file link ‘.addChangedAttr’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/addChangedAttr.Rd:30: file link ‘.addChangedAttr’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/addTagsToOutput.Rd:20: file link ‘.addTagsToOutput’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/addTagsToOutput.Rd:23: file link ‘.addTagsToOutput’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/cacheMessage.Rd:22: file link ‘.cacheMessage’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/cacheMessage.Rd:25: file link ‘.cacheMessage’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/checkCacheRepo.Rd:15: file link ‘.checkCacheRepo’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/checkCacheRepo.Rd:18: file link ‘.checkCacheRepo’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/parseElems.Rd:17: file link ‘.parseElems’ in package ‘quickPlot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/parseElems.Rd:20: file link ‘.parseElems’ in package ‘quickPlot’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/preDigestByClass.Rd:16: file link ‘.preDigestByClass’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/preDigestByClass.Rd:19: file link ‘.preDigestByClass’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/prepareOutput.Rd:18: file link ‘.prepareOutput’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/prepareOutput.Rd:21: file link ‘.prepareOutput’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/setPaths.Rd:42: file link ‘tmpDir’ in package ‘raster’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/spades.Rd:234: file link ‘Cache’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/tagsByClass.Rd:13: file link ‘.tagsByClass’ in package ‘reproducible’ does not exist and so has been treated as a topic
  Rd warning: /home/hornik/tmp/scratch/RtmpI0ev7u/R.INSTALL66d174c699bf/SpaDES.core/man/tagsByClass.Rd:17: file link ‘.tagsByClass’ in package ‘reproducible’ does not exist and so has been treated as a topic
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SpaDES.core.Rcheck/00install.out’ for details.