Running 'testthat.R' [7s/8s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(confoundr)
  > 
  > test_check("confoundr")
  -- 1. Error: diagnostic 1, recent, recency 1 (@testBalanceWApplyScope.r#11)  ---
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 2. Error: diagnostic 2, average over strata (@testBalanceWApplyScope.r#65)  -
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 3. Error: diagnostic 1, average over history (@testBalanceWApplyScope.r#117) 
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 4. Error: diagnostic 1, average over time (@testBalanceWApplyScope.r#167)  --
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 5. Error: diagnostic 1, average within periods of distance (@testBalanceWAppl
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 6. Error: diagnostic 1, average over distance (@testBalanceWApplyScope.r#264)
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 7. Error: diagnostic 1, no censoring, scope all (@testBalanceWOApplyScope.r#1
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 8. Error: diagnostic 1, censoring, scope all (@testBalanceWOApplyScope.r#68) 
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 9. Error: diagnostic 2, no censoring, weight, scope all (@testBalanceWOApplyS
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 10. Error: diagnostic 2, censoring, weight, stratify, scope all (@testBalance
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 11. Error: diagnostic 2, no censoring, stratify, scope all (@testBalanceWOApp
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 12. Error: diagnostic 2, censoring, stratify, scope all (@testBalanceWOApplyS
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 13. Error: diagnostic 3, no censoring, weight, scope all (@testBalanceWOApply
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 14. Error: diagnostic 3, censoring, weight, scope all (@testBalanceWOApplySco
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 15. Error: diagnostic 3, no censoring, stratify, scope all (@testBalanceWOApp
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 16. Error: diagnostic 1, scope recent, recency 0 (@testDiagnose.r#11)  ------
  'where' must be an environment
  Backtrace:
    1. confoundr::diagnose(...)
    2. confoundr:::loop.fxn(...)
    3. confoundr::lengthen(...)
   11. tidyr::separate(...)
   12. ellipsis::check_dots_used()
   14. ellipsis:::exit_handler(action)
   15. base::bquote(...)
  
  -- 17. Error: Diagnostic 1, Exposure #1 (@testLengthenJoint.r#11)  -------------
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 18. Error: Diagnostic 1, Exposure #2 (@testLengthenJoint.r#48)  -------------
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 19. Error: Diagnostic 2, Exposure #1, weight (@testLengthenJoint.r#85)  -----
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 20. Error: Diagnostic 2, Exposure #1, stratification (@testLengthenJoint.r#12
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 21. Error: Diagnostic 3, Exposure #1, weight (@testLengthenJoint.r#164)  ----
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 22. Error: Diagnostic 3, Exposure #2, stratification (@testLengthenJoint.r#20
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 23. Error: Diagnostic 1, no censoring (@testLengthenSingle.r#11)  -----------
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 24. Error: Diagnostic 1, censoring (@testLengthenSingle.r#48)  --------------
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 25. Error: Diagnostic 2, no censoring, weight (@testLengthenSingle.r#88)  ---
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 26. Error: Diagnostic 2, censoring, weight (@testLengthenSingle.r#128)  -----
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 27. Error: Diagnostic 2, no censoring, stratification (@testLengthenSingle.r#
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 28. Error: Diagnostic 2, censoring, stratification (@testLengthenSingle.r#214
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 29. Error: Diagnostic 3, no censoring, weight (@testLengthenSingle.r#260)  --
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 30. Error: Diagnostic 3, censoring, weight (@testLengthenSingle.r#300)  -----
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 31. Error: Diagnostic 3, no censoring, stratification (@testLengthenSingle.r#
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 32. Error: Diagnostic 3, censoring, stratification (@testLengthenSingle.r#385
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 33. Error: Formats and Names under No Dropout (@testMakeHistoryOne.r#12)  ---
  'where' must be an environment
  Backtrace:
    1. confoundr::makehistory.one(...)
    2. dplyr::ungroup(.)
    2. dplyr::select(., .data$ID, list.exposure)
    2. tidyr::gather(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 34. Error: Formats and Names under Dropout (@testMakeHistoryOne.r#50)  ------
  'where' must be an environment
  Backtrace:
    1. confoundr::makehistory.one(...)
    2. dplyr::ungroup(.)
    2. dplyr::select(., .data$ID, list.exposure)
    2. tidyr::gather(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 35. Error: Formats and Names under No Dropout (@testMakeHistoryTwo.r#12)  ---
  'where' must be an environment
  Backtrace:
    1. confoundr::makehistory.two(...)
    2. dplyr::ungroup(.)
    2. dplyr::select(., .data$ID, list.exposure.a, list.exposure.b)
    2. tidyr::gather(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 36. Error: Formats and Names under Dropout (@testMakeHistoryTwo.r#71)  ------
  'where' must be an environment
  Backtrace:
    1. confoundr::makehistory.two(...)
    2. dplyr::ungroup(.)
    2. dplyr::select(., .data$ID, list.exposure.a, list.exposure.b)
    2. tidyr::gather(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 37. Error: relative time omission (@testOmitHistory.r#11)  ------------------
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 38. Error: fixed time omission (@testOmitHistory.r#54)  ---------------------
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 39. Error: same time omission (@testOmitHistory.r#97)  ----------------------
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  -- 40. Error: preserve name.cov format (@testOmitHistory.r#139)  ---------------
  'where' must be an environment
  Backtrace:
    1. confoundr::lengthen(...)
    9. tidyr::separate(...)
   10. ellipsis::check_dots_used()
   12. ellipsis:::exit_handler(action)
   13. base::bquote(...)
  
  == testthat results  ===========================================================
  [ OK: 8 | SKIPPED: 0 | WARNINGS: 26 | FAILED: 40 ]
  1. Error: diagnostic 1, recent, recency 1 (@testBalanceWApplyScope.r#11) 
  2. Error: diagnostic 2, average over strata (@testBalanceWApplyScope.r#65) 
  3. Error: diagnostic 1, average over history (@testBalanceWApplyScope.r#117) 
  4. Error: diagnostic 1, average over time (@testBalanceWApplyScope.r#167) 
  5. Error: diagnostic 1, average within periods of distance (@testBalanceWApplyScope.r#215) 
  6. Error: diagnostic 1, average over distance (@testBalanceWApplyScope.r#264) 
  7. Error: diagnostic 1, no censoring, scope all (@testBalanceWOApplyScope.r#13) 
  8. Error: diagnostic 1, censoring, scope all (@testBalanceWOApplyScope.r#68) 
  9. Error: diagnostic 2, no censoring, weight, scope all (@testBalanceWOApplyScope.r#124) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted