Error(s) in re-building vignettes:
  ...
--- re-building ‘Baseline-Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: ggplot2
Loading required package: stringi
Quitting from lines 72-77 (Baseline-Vignette.Rmd) 
Error: processing vignette 'Baseline-Vignette.Rmd' failed with diagnostics:
The column CLONE was not found
--- failed re-building ‘Baseline-Vignette.Rmd’

--- re-building ‘DistToNearest-Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: ggplot2
Loading required package: stringi
Quitting from lines 85-92 (DistToNearest-Vignette.Rmd) 
Error: processing vignette 'DistToNearest-Vignette.Rmd' failed with diagnostics:
The column JUNCTION was not found
--- failed re-building ‘DistToNearest-Vignette.Rmd’

--- re-building ‘Mutation-Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: ggplot2
As of v1.0.0 the AIRR Rearrangement schema is now the default file format.
A description of the standard is available at https://docs.airr-community.org.
The legacy Change-O format is supported through arguments to each function
that allow the input column names to be explicitly defined.
Loading required package: stringi

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 43-52 (Mutation-Vignette.Rmd) 
Error: processing vignette 'Mutation-Vignette.Rmd' failed with diagnostics:
object 'ISOTYPE' not found
--- failed re-building ‘Mutation-Vignette.Rmd’

--- re-building ‘Shmulate-Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: ggplot2
Loading required package: stringi
As of v1.0.0 the AIRR Rearrangement schema is now the default file format.
A description of the standard is available at https://docs.airr-community.org.
The legacy Change-O format is supported through arguments to each function
that allow the input column names to be explicitly defined.

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

--- finished re-building ‘Shmulate-Vignette.Rmd’

--- re-building ‘Targeting-Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: ggplot2
Loading required package: stringi
Quitting from lines 106-112 (Targeting-Vignette.Rmd) 
Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics:
The column CLONE was not found
--- failed re-building ‘Targeting-Vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘Baseline-Vignette.Rmd’ ‘DistToNearest-Vignette.Rmd’
  ‘Mutation-Vignette.Rmd’ ‘Targeting-Vignette.Rmd’

Error: Vignette re-building failed.
Execution halted