GWplot: no visible global function definition for 'bitmap'
GWplot: no visible global function definition for 'par'
GWplot: no visible global function definition for 'write.table'
GWplot: no visible binding for global variable 'median'
GWplot: no visible global function definition for 'plot'
GWplot: no visible global function definition for 'axis'
GWplot: no visible global function definition for 'points'
GWplot: no visible global function definition for 'abline'
GWplot: no visible global function definition for 'dev.off'
auto: no visible global function definition for 'read.table'
geepack.lgst: no visible global function definition for 'na.omit'
geepack.lgst : cor.snp: no visible global function definition for 'sd'
geepack.lgst : cor.snp: no visible global function definition for 'cor'
geepack.lgst: no visible global function definition for 'fisher.test'
geepack.lgst: no visible global function definition for 'chisq.test'
geepack.lgst: no visible global function definition for 'as.formula'
geepack.lgst: no visible global function definition for 'glm'
geepack.lgst: no visible binding for global variable 'na.omit'
geepack.lgst: no visible global function definition for 'pchisq'
geepack.lgst.batch : read.in.data: no visible global function
  definition for 'read.table'
geepack.lgst.batch: no visible global function definition for 'na.omit'
geepack.lgst.batch: no visible global function definition for 'var'
geepack.lgst.batch: no visible binding for global variable 'var'
geepack.lgst.batch: no visible global function definition for 'cor'
geepack.lgst.batch: no visible global function definition for
  'write.table'
geepack.lgst.batch.imputed : read.in.data: no visible global function
  definition for 'read.table'
geepack.lgst.batch.imputed: no visible global function definition for
  'na.omit'
geepack.lgst.batch.imputed: no visible global function definition for
  'var'
geepack.lgst.batch.imputed: no visible binding for global variable
  'var'
geepack.lgst.batch.imputed: no visible global function definition for
  'cor'
geepack.lgst.batch.imputed: no visible global function definition for
  'write.table'
geepack.lgst.imputed: no visible global function definition for
  'na.omit'
geepack.lgst.imputed : cor.snp: no visible global function definition
  for 'sd'
geepack.lgst.imputed : cor.snp: no visible global function definition
  for 'cor'
geepack.lgst.imputed: no visible global function definition for
  'chisq.test'
geepack.lgst.imputed: no visible global function definition for
  'as.formula'
geepack.lgst.imputed: no visible global function definition for 'glm'
geepack.lgst.imputed: no visible binding for global variable 'na.omit'
geepack.lgst.imputed: no visible global function definition for
  'pchisq'
geepack.lgst.int: no visible global function definition for 'na.omit'
geepack.lgst.int : cor.snp: no visible global function definition for
  'sd'
geepack.lgst.int : cor.snp: no visible global function definition for
  'cor'
geepack.lgst.int: no visible global function definition for 'cor'
geepack.lgst.int: no visible global function definition for
  'chisq.test'
geepack.lgst.int: no visible global function definition for 'glm'
geepack.lgst.int: no visible global function definition for 'pchisq'
geepack.lgst.int.batch : read.in.data: no visible global function
  definition for 'read.table'
geepack.lgst.int.batch: no visible global function definition for
  'na.omit'
geepack.lgst.int.batch: no visible global function definition for 'var'
geepack.lgst.int.batch: no visible binding for global variable 'var'
geepack.lgst.int.batch: no visible global function definition for 'cor'
geepack.lgst.int.batch: no visible global function definition for
  'write.table'
geepack.lgst.int.batch.imputed : read.in.data: no visible global
  function definition for 'read.table'
geepack.lgst.int.batch.imputed: no visible global function definition
  for 'na.omit'
geepack.lgst.int.batch.imputed: no visible global function definition
  for 'var'
geepack.lgst.int.batch.imputed: no visible binding for global variable
  'var'
geepack.lgst.int.batch.imputed: no visible global function definition
  for 'cor'
geepack.lgst.int.batch.imputed: no visible global function definition
  for 'write.table'
geepack.lgst.int.imputed: no visible global function definition for
  'var'
geepack.lgst.int.imputed: no visible binding for global variable 'var'
geepack.lgst.int.imputed: no visible global function definition for
  'na.omit'
geepack.lgst.int.imputed : cor.snp: no visible global function
  definition for 'sd'
geepack.lgst.int.imputed : cor.snp: no visible global function
  definition for 'cor'
geepack.lgst.int.imputed: no visible global function definition for
  'cor'
geepack.lgst.int.imputed: no visible global function definition for
  'glm'
geepack.lgst.int.imputed: no visible global function definition for
  'pchisq'
geepack.quant.batch : cor.snp: no visible global function definition
  for 'sd'
geepack.quant.batch : cor.snp: no visible global function definition
  for 'cor'
geepack.quant.batch : read.in.data: no visible global function
  definition for 'read.table'
geepack.quant.batch: no visible global function definition for
  'na.omit'
geepack.quant.batch: no visible global function definition for 'var'
geepack.quant.batch: no visible binding for global variable 'var'
geepack.quant.batch: no visible global function definition for 'cor'
geepack.quant.batch: no visible global function definition for 'pchisq'
geepack.quant.batch: no visible global function definition for
  'write.table'
geepack.quant.batch.imputed : cor.snp: no visible global function
  definition for 'sd'
geepack.quant.batch.imputed : cor.snp: no visible global function
  definition for 'cor'
geepack.quant.batch.imputed : read.in.data: no visible global function
  definition for 'read.table'
geepack.quant.batch.imputed: no visible global function definition for
  'na.omit'
geepack.quant.batch.imputed: no visible global function definition for
  'var'
geepack.quant.batch.imputed: no visible binding for global variable
  'var'
geepack.quant.batch.imputed: no visible global function definition for
  'cor'
geepack.quant.batch.imputed: no visible global function definition for
  'pchisq'
geepack.quant.batch.imputed: no visible global function definition for
  'write.table'
geepack.quant.int.batch : cor.snp: no visible global function
  definition for 'sd'
geepack.quant.int.batch : cor.snp: no visible global function
  definition for 'cor'
geepack.quant.int.batch : read.in.data: no visible global function
  definition for 'read.table'
geepack.quant.int.batch: no visible global function definition for
  'na.omit'
geepack.quant.int.batch: no visible global function definition for
  'pchisq'
geepack.quant.int.batch: no visible global function definition for
  'write.table'
geepack.quant.int.batch.imputed : cor.snp: no visible global function
  definition for 'sd'
geepack.quant.int.batch.imputed : cor.snp: no visible global function
  definition for 'cor'
geepack.quant.int.batch.imputed : read.in.data: no visible global
  function definition for 'read.table'
geepack.quant.int.batch.imputed: no visible global function definition
  for 'na.omit'
geepack.quant.int.batch.imputed: no visible global function definition
  for 'pchisq'
geepack.quant.int.batch.imputed: no visible global function definition
  for 'write.table'
glmm.lgst: no visible global function definition for 'na.omit'
glmm.lgst : cor.snp: no visible global function definition for 'sd'
glmm.lgst : cor.snp: no visible global function definition for 'cor'
glmm.lgst: no visible global function definition for 'fisher.test'
glmm.lgst: possible error in lmer(phen1 ~ x.snp + x.covar + (1 |
  famid), family = "binomial"): unused argument (family = "binomial")
glmm.lgst: possible error in lmer(phen1 ~ x.snp + (1 | famid), family =
  "binomial"): unused argument (family = "binomial")
glmm.lgst: no visible global function definition for 'chisq.test'
glmm.lgst: no visible global function definition for 'coef'
glmm.lgst: no visible global function definition for 'pchisq'
glmm.lgst: no visible global function definition for 'vcov'
glmm.lgst.batch : read.in.data: no visible global function definition
  for 'read.table'
glmm.lgst.batch: no visible global function definition for 'na.omit'
glmm.lgst.batch: no visible global function definition for 'var'
glmm.lgst.batch: no visible binding for global variable 'var'
glmm.lgst.batch: no visible global function definition for 'cor'
glmm.lgst.batch: no visible global function definition for
  'write.table'
lmeVpack.batch.imputed : cor.snp: no visible global function definition
  for 'sd'
lmeVpack.batch.imputed : cor.snp: no visible global function definition
  for 'cor'
lmeVpack.batch.imputed : read.in.data: no visible global function
  definition for 'read.table'
lmeVpack.batch.imputed: no visible global function definition for
  'na.omit'
lmeVpack.batch.imputed: no visible global function definition for 'var'
lmeVpack.batch.imputed: no visible binding for global variable 'var'
lmeVpack.batch.imputed: no visible global function definition for 'cor'
lmeVpack.batch.imputed: no visible binding for global variable
  'na.omit'
lmeVpack.batch.imputed: no visible global function definition for
  'pchisq'
lmeVpack.batch.imputed: no visible global function definition for
  'write.table'
lmepack.batch : cor.snp: no visible global function definition for 'sd'
lmepack.batch : cor.snp: no visible global function definition for
  'cor'
lmepack.batch : read.in.data: no visible global function definition for
  'read.table'
lmepack.batch: no visible global function definition for 'na.omit'
lmepack.batch: no visible global function definition for 'var'
lmepack.batch: no visible binding for global variable 'var'
lmepack.batch: no visible global function definition for 'cor'
lmepack.batch: no visible binding for global variable 'na.omit'
lmepack.batch: no visible global function definition for 'pchisq'
lmepack.batch: no visible global function definition for 'write.table'
lmepack.batch.imputed : cor.snp: no visible global function definition
  for 'sd'
lmepack.batch.imputed : cor.snp: no visible global function definition
  for 'cor'
lmepack.batch.imputed : read.in.data: no visible global function
  definition for 'read.table'
lmepack.batch.imputed: no visible global function definition for
  'na.omit'
lmepack.batch.imputed: no visible global function definition for 'var'
lmepack.batch.imputed: no visible binding for global variable 'var'
lmepack.batch.imputed: no visible global function definition for 'cor'
lmepack.batch.imputed: no visible binding for global variable 'na.omit'
lmepack.batch.imputed: no visible global function definition for
  'pchisq'
lmepack.batch.imputed: no visible global function definition for
  'write.table'
lmepack.int.batch : cor.snp: no visible global function definition for
  'sd'
lmepack.int.batch : cor.snp: no visible global function definition for
  'cor'
lmepack.int.batch : read.in.data: no visible global function definition
  for 'read.table'
lmepack.int.batch: no visible global function definition for 'na.omit'
lmepack.int.batch: no visible binding for global variable 'na.omit'
lmepack.int.batch: no visible global function definition for 'pchisq'
lmepack.int.batch: no visible global function definition for
  'write.table'
lmepack.int.batch.imputed : cor.snp: no visible global function
  definition for 'sd'
lmepack.int.batch.imputed : cor.snp: no visible global function
  definition for 'cor'
lmepack.int.batch.imputed : read.in.data: no visible global function
  definition for 'read.table'
lmepack.int.batch.imputed: no visible global function definition for
  'na.omit'
lmepack.int.batch.imputed: no visible binding for global variable
  'na.omit'
lmepack.int.batch.imputed: no visible global function definition for
  'pchisq'
lmepack.int.batch.imputed: no visible global function definition for
  'write.table'
qq: no visible global function definition for 'bitmap'
qq: no visible global function definition for 'na.omit'
qq: no visible global function definition for 'median'
qq: no visible global function definition for 'qchisq'
qq: no visible global function definition for 'par'
qq: no visible global function definition for 'qqplot'
qq: no visible global function definition for 'abline'
qq: no visible global function definition for 'text'
qq: no visible global function definition for 'dev.off'
Undefined global functions or variables:
  abline as.formula axis bitmap chisq.test coef cor dev.off fisher.test
  glm median na.omit par pchisq plot points qchisq qqplot read.table sd
  text var vcov write.table
Consider adding
  importFrom("grDevices", "bitmap", "dev.off")
  importFrom("graphics", "abline", "axis", "par", "plot", "points",
             "text")
  importFrom("stats", "as.formula", "chisq.test", "coef", "cor",
             "fisher.test", "glm", "median", "na.omit", "pchisq",
             "qchisq", "qqplot", "sd", "var", "vcov")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.