Error(s) in re-building vignettes:
--- re-building ‘ExtractingRegionsForSimulation.Rmd’ using rmarkdown
Loading required package: hapsim
Loading required package: MASS
Loading required package: stringr
Loading required package: readr
Parsed with column specification:
cols(
  .default = col_character(),
  `#CHROM` = col_double(),
  POS = col_double(),
  QUAL = col_double()
)
See spec(...) for full column specifications.
Warning in gplots::heatmap.2(C, col = rev(heat.colors(100)), Rowv = F, Colv = F,  :
  Discrepancy: Rowv is FALSE, while dendrogram is `both'. Omitting row dendogram.
Warning in gplots::heatmap.2(C, col = rev(heat.colors(100)), Rowv = F, Colv = F,  :
  Discrepancy: Colv is FALSE, while dendrogram is `column'. Omitting column dendogram.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ExtractingRegionsForSimulation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ExtractingRegionsForSimulation.Rmd’

--- re-building ‘SimulatingFamilyData.Rmd’ using rmarkdown
Loading required package: hapsim
Loading required package: MASS
Loading required package: stringr
Loading required package: readr
Parsed with column specification:
cols(
  .default = col_character(),
  `#CHROM` = col_double(),
  POS = col_double(),
  QUAL = col_double()
)
See spec(...) for full column specifications.

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Warning in heatmap.2(cor(genotypes)^2, col = rev(heat.colors(100)), trace = "none",  :
  Discrepancy: Rowv is FALSE, while dendrogram is `both'. Omitting row dendogram.
Warning in heatmap.2(cor(genotypes)^2, col = rev(heat.colors(100)), trace = "none",  :
  Discrepancy: Colv is FALSE, while dendrogram is `column'. Omitting column dendogram.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'SimulatingFamilyData.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘SimulatingFamilyData.Rmd’

SUMMARY: processing the following files failed:
  ‘ExtractingRegionsForSimulation.Rmd’ ‘SimulatingFamilyData.Rmd’

Error: Vignette re-building failed.
Execution halted