Error(s) in re-building vignettes:
--- re-building ‘using_drtmle.Rmd’ using rmarkdown
drtmle: TMLE with doubly robust inference
Version: 1.0.5
Loading required package: nnls
Super Learner
Version: 2.0-26
Package created on 2019-10-27

Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames,  :
  SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames,  :
  SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames,  :
  SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames,  :
  SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames,  :
  SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames,  :
  SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames,  :
  SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames,  :
  SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames,  :
  SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
Warning in method$computeCoef(Z = Z, Y = Y, libraryNames = libraryNames,  :
  SL.step.interaction_All are duplicates of previous learners. Removing from super learner.
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(object, newdata, se.fit, scale = 1, type = if (type ==  :
  prediction from a rank-deficient fit may be misleading
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
  Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
  Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
  Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
  Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
  Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
  Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
  Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
  Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
  Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
  Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
  Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
  Consider formula(paste(x, collapse = " ")) instead.
Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using_drtmle.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using_drtmle.Rmd’

SUMMARY: processing the following file failed:
  ‘using_drtmle.Rmd’

Error: Vignette re-building failed.
Execution halted