Error(s) in re-building vignettes:
--- re-building ‘a_introduction.Rmd’ using rmarkdown
Alert: Saving log-ratio transformed counts to @logratio.
Alert: Fixing permutations to active random seed.
Alert: Use '[' to index proportionality matrix.
Alert: Use 'updateCutoffs' to calculate FDR.
Alert: Saving log-ratio transformed counts to @logratio.
Alert: Fixing permutations to active random seed.
Alert: Use '[' to index proportionality matrix.
Alert: Use 'updateCutoffs' to calculate FDR.
Alert: Saving log-ratio transformed counts to @logratio.
Alert: Fixing permutations to active random seed.
Alert: Use '[' to index proportionality matrix.
Alert: Use 'updateCutoffs' to calculate FDR.
Alert: Using 'subset' is not compatible the @results table.
Alert: Using 'subset' disables permutation testing.
Alert: Using 'subset' is not compatible the @results table.
Alert: Using 'subset' disables permutation testing.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'a_introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘a_introduction.Rmd’

--- re-building ‘b_visualization.Rmd’ using rmarkdown
Alert: This function ignores index.
Alert: This function ignores index.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'b_visualization.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘b_visualization.Rmd’

--- re-building ‘d_advanced.Rmd’ using rmarkdown
Alert: Saving log-ratio transformed counts to @logratio.
Alert: Fixing permutations to active random seed.
Alert: Use '[' to index proportionality matrix.
Alert: Use 'updateCutoffs' to calculate FDR.
Alert: Saving log-ratio transformed counts to @logratio.
Alert: Fixing permutations to active random seed.
Alert: Use '[' to index proportionality matrix.
Alert: Use 'updateCutoffs' to calculate FDR.
Alert: Saving log-ratio transformed counts to @logratio.
Alert: Fixing permutations to active random seed.
Alert: Use '[' to index proportionality matrix.
Alert: Use 'updateCutoffs' to calculate FDR.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'd_advanced.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘d_advanced.Rmd’

--- re-building ‘e_differential.Rmd’ using rmarkdown
Alert: Fixing permutations to active random seed.
Alert: Use 'setActive' to select a theta type.
Alert: Use 'updateCutoffs' to calculate FDR.
Alert: Use 'updateF' to calculate F-stat.
Alert: Update FDR or F-stat manually.
Alert: Update FDR or F-stat manually.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'e_differential.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘e_differential.Rmd’

--- re-building ‘f_moderation.Rmd’ using rmarkdown
Alert: Fixing permutations to active random seed.
Alert: Use 'setActive' to select a theta type.
Alert: Use 'updateCutoffs' to calculate FDR.
Alert: Use 'updateF' to calculate F-stat.
Alert: Calculating limma-based weights.
Alert: Fixing permutations to active random seed.
Alert: Use 'setActive' to select a theta type.
Alert: Use 'updateCutoffs' to calculate FDR.
Alert: Use 'updateF' to calculate F-stat.
Alert: Fixing permutations to active random seed.
Alert: Use 'setActive' to select a theta type.
Alert: Use 'updateCutoffs' to calculate FDR.
Alert: Use 'updateF' to calculate F-stat.
Alert: Calculating limma-based weights.
Alert: Fixing permutations to active random seed.
Alert: Use 'setActive' to select a theta type.
Alert: Use 'updateCutoffs' to calculate FDR.
Alert: Use 'updateF' to calculate F-stat.
Alert: Building reference set with ivar and counts.
Alert: Calculating weights with regard to reference.
Alert: Building reference set with ivar and counts.
Alert: Calculating weights with regard to reference.
Alert: Building reference set with ivar and counts.
Alert: Calculating weights with regard to reference.
Alert: Building reference set with ivar and counts.
Alert: Calculating weights with regard to reference.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'f_moderation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘f_moderation.Rmd’

--- re-building ‘g_questions.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'g_questions.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘g_questions.Rmd’

SUMMARY: processing the following files failed:
  ‘a_introduction.Rmd’ ‘b_visualization.Rmd’ ‘d_advanced.Rmd’
  ‘e_differential.Rmd’ ‘f_moderation.Rmd’ ‘g_questions.Rmd’

Error: Vignette re-building failed.
Execution halted