installed size is  9.4Mb
  sub-directories of 1Mb or more:
    libs   9.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘extremeStat.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'extremeStat.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘extremeStat.Rmd’

SUMMARY: processing the following file failed:
  ‘extremeStat.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘basics.Rmd’ using rmarkdown
Loading required package: eyelinker
Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: tidyr
Loading required package: ggplot2
Loading required package: intervals

Attaching package: 'intervals'

The following object is masked from 'package:tidyr':

    expand

Loading required package: stringr
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'basics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘basics.Rmd’

--- re-building ‘format.Rmd’ using rmarkdown
Loading required package: eyelinker
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'format.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘format.Rmd’

SUMMARY: processing the following files failed:
  ‘basics.Rmd’ ‘format.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ezcox.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ezcox.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ezcox.Rmd’

SUMMARY: processing the following file failed:
  ‘ezcox.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘getting_started.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'getting_started.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘getting_started.Rmd’

SUMMARY: processing the following file failed:
  ‘getting_started.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ezpickr_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ezpickr_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ezpickr_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘ezpickr_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘basics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'basics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘basics.Rmd’

--- re-building ‘overview.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'overview.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘overview.Rmd’

SUMMARY: processing the following files failed:
  ‘basics.Rmd’ ‘overview.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘fable.Rmd’ using rmarkdown
Loading required package: fabletools

Attaching package: 'dplyr'

The following object is masked from 'package:tsibble':

    id

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fable.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fable.Rmd’

--- re-building ‘transformations.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'transformations.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘transformations.Rmd’

SUMMARY: processing the following files failed:
  ‘fable.Rmd’ ‘transformations.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    doc    1.6Mb
    libs   4.6Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘fairness.Rmd’ using rmarkdown
Setting direction: controls < cases
Setting direction: controls < cases
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fairness.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fairness.Rmd’

SUMMARY: processing the following file failed:
  ‘fairness.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘runit.R’ [36s/99s]
Running the tests in ‘tests/runit.R’ failed.
Last 13 lines of output:
  test_touch: (1 checks) ... OK (2.01 seconds)
  --------------------------- 
  Test file: /Volumes/Builds/packages/high-sierra-x86_64/results/4.0/fakemake.Rcheck/fakemake/runit_tests/runit-throw.R 
  test_exception: (1 checks) ... OK (0 seconds)
  --------------------------- 
  Test file: /Volumes/Builds/packages/high-sierra-x86_64/results/4.0/fakemake.Rcheck/fakemake/runit_tests/runit-xmake.R 
  test_make_full_tree: (4 checks) ... OK (0.05 seconds)
  test_make_missing: (2 checks) ... OK (0.01 seconds)
  test_make_newer: (2 checks) ... OK (1.03 seconds)
  test_make_phony: (3 checks) ... OK (2.04 seconds)
  test_make_prerequisite: (3 checks) ... OK (1.03 seconds)
  test_make_sink: (2 checks) ... OK (0.01 seconds)
  test_make_source_files: (0 checks) ... OK (0 seconds)
  Error: RUnit failed.
  Execution halted
installed size is 42.4Mb
  sub-directories of 1Mb or more:
    libs  42.2Mb
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    libs   6.7Mb
installed size is 17.8Mb
  sub-directories of 1Mb or more:
    data   1.3Mb
    libs  16.4Mb
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    data   4.8Mb
    libs   2.7Mb
installed size is  9.6Mb
  sub-directories of 1Mb or more:
    libs   9.5Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘Errata2e.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Errata2e.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Errata2e.Rmd’

SUMMARY: processing the following file failed:
  ‘Errata2e.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.3Mb
  sub-directories of 1Mb or more:
    extdata   2.0Mb
    libs      7.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘FateID.Rmd’ using rmarkdown
Quitting from lines 141-142 (FateID.Rmd) 
Error: processing vignette 'FateID.Rmd' failed with diagnostics:
there is no package called 'destiny'
--- failed re-building ‘FateID.Rmd’

SUMMARY: processing the following file failed:
  ‘FateID.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data   3.5Mb
    libs   2.4Mb
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    libs   8.9Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘vignettes.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignettes.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignettes.Rmd’

SUMMARY: processing the following file failed:
  ‘vignettes.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 39.3Mb
  sub-directories of 1Mb or more:
    doc    2.2Mb
    libs  36.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘fdapaceVig.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fdapaceVig.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fdapaceVig.Rmd’

SUMMARY: processing the following file failed:
  ‘fdapaceVig.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data   2.3Mb
    libs   3.2Mb
Error(s) in re-building vignettes:
--- re-building ‘feasts.Rmd’ using rmarkdown
Loading required package: fabletools

Attaching package: 'dplyr'

The following object is masked from 'package:tsibble':

    id

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'feasts.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘feasts.Rmd’

SUMMARY: processing the following file failed:
  ‘feasts.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘febr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'febr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘febr.Rmd’

SUMMARY: processing the following file failed:
  ‘febr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mesaHighVignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mesaHighVignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mesaHighVignette.Rmd’

SUMMARY: processing the following file failed:
  ‘mesaHighVignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘APIUsage.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'APIUsage.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘APIUsage.Rmd’

SUMMARY: processing the following file failed:
  ‘APIUsage.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    libs   4.2Mb
Error(s) in re-building vignettes:
--- re-building ‘delayed.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'delayed.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘delayed.Rmd’

--- re-building ‘events.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'events.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘events.Rmd’

--- re-building ‘plugins.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'plugins.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘plugins.Rmd’

SUMMARY: processing the following files failed:
  ‘delayed.Rmd’ ‘events.Rmd’ ‘plugins.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘files.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'files.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘files.Rmd’

SUMMARY: processing the following file failed:
  ‘files.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘quick_charts.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Warning: Position guide is perpendicular to the intended axis. Did you mean to specify a different guide `position`?
Warning: guide_axis(): Discarding guide on merge. Do you have more than one guide with the same position?
Warning: guide_axis(): Discarding guide on merge. Do you have more than one guide with the same position?
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'quick_charts.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘quick_charts.Rmd’

SUMMARY: processing the following file failed:
  ‘quick_charts.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘lifeExpectancy.Rmd’ using rmarkdown
Warning: Removed 4 rows containing non-finite values (stat_boxplot).
Warning: Removed 4 rows containing non-finite values (stat_boxplot).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lifeExpectancy.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lifeExpectancy.Rmd’

--- re-building ‘selectIndicatorsRedRed.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'selectIndicatorsRedRed.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘selectIndicatorsRedRed.Rmd’

SUMMARY: processing the following files failed:
  ‘lifeExpectancy.Rmd’ ‘selectIndicatorsRedRed.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘finreportr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'finreportr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘finreportr.Rmd’

SUMMARY: processing the following file failed:
  ‘finreportr.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    data   5.4Mb
    libs   2.5Mb
Error(s) in re-building vignettes:
--- re-building ‘contribute.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'contribute.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘contribute.Rmd’

--- re-building ‘overview_colors.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'overview_colors.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘overview_colors.Rmd’

SUMMARY: processing the following files failed:
  ‘contribute.Rmd’ ‘overview_colors.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘fit4NM-Ex.R’ failed
The error most likely occurred in:

> ### Name: fit4NM
> ### Title: Platform for NONMEM
> ### Aliases: fit4NM
> ### Keywords: utilities
> 
> ### ** Examples
> 
> fit4NM()

 *** caught segfault ***
address 0x0, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
Error(s) in re-building vignettes:
  ...
--- re-building ‘fitbitScraper-examples.Rmd’ using rmarkdown
Quitting from lines 22-24 (fitbitScraper-examples.Rmd) 
Error: processing vignette 'fitbitScraper-examples.Rmd' failed with diagnostics:
login failed
--- failed re-building ‘fitbitScraper-examples.Rmd’

SUMMARY: processing the following file failed:
  ‘fitbitScraper-examples.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.0Mb
  sub-directories of 1Mb or more:
    libs   9.1Mb
Error(s) in re-building vignettes:
--- re-building ‘diagnostic_plots.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'diagnostic_plots.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘diagnostic_plots.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction.Rmd’

--- re-building ‘univariate_distributions.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'univariate_distributions.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘univariate_distributions.Rmd’

SUMMARY: processing the following files failed:
  ‘diagnostic_plots.Rmd’ ‘introduction.Rmd’
  ‘univariate_distributions.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘elo-ratings-example.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'elo-ratings-example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘elo-ratings-example.Rmd’

--- re-building ‘mens-stats.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mens-stats.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mens-stats.Rmd’

--- re-building ‘womens-stats.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'womens-stats.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘womens-stats.Rmd’

SUMMARY: processing the following files failed:
  ‘elo-ratings-example.Rmd’ ‘mens-stats.Rmd’ ‘womens-stats.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    libs   3.4Mb
Error(s) in re-building vignettes:
--- re-building ‘flashlight.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: lattice
Loading required package: ggplot2

Attaching package: 'caret'

The following objects are masked from 'package:MetricsWeighted':

    precision, recall


Attaching package: 'xgboost'

The following object is masked from 'package:dplyr':

    slice

Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning in xgb.train(params, data = dtrain, watchlist = list(train = dtrain,  :
  xgb.train: `seed` is ignored in R package.  Use `set.seed()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'flashlight.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘flashlight.Rmd’

SUMMARY: processing the following file failed:
  ‘flashlight.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘FLightR_with_black-tailed_godwit_vignette_from_MEE_2017.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'FLightR_with_black-tailed_godwit_vignette_from_MEE_2017.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘FLightR_with_black-tailed_godwit_vignette_from_MEE_2017.Rmd’

SUMMARY: processing the following file failed:
  ‘FLightR_with_black-tailed_godwit_vignette_from_MEE_2017.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  WARNING: shared objects/dynamic libraries with hard-coded temporary installation paths
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/float.Rcheck/00install.out’ for details.
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    libs   6.6Mb
installed size is 15.3Mb
  sub-directories of 1Mb or more:
    libs  15.1Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘documentation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'documentation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘documentation.Rmd’

SUMMARY: processing the following file failed:
  ‘documentation.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘fma-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fma-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fma-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘fma-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘fmriqa-intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fmriqa-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fmriqa-intro.Rmd’

SUMMARY: processing the following file failed:
  ‘fmriqa-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘codec.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'codec.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘codec.Rmd’

--- re-building ‘foci.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'foci.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘foci.Rmd’

SUMMARY: processing the following files failed:
  ‘codec.Rmd’ ‘foci.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘foghorn.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'foghorn.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘foghorn.Rmd’

SUMMARY: processing the following file failed:
  ‘foghorn.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 47.9Mb
  sub-directories of 1Mb or more:
    libs  46.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘foiegras-basics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'foiegras-basics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘foiegras-basics.Rmd’

SUMMARY: processing the following file failed:
  ‘foiegras-basics.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Using_fontHind.Rmd’ using rmarkdown
Quitting from lines 38-49 (Using_fontHind.Rmd) 
Error: processing vignette 'Using_fontHind.Rmd' failed with diagnostics:
polygon edge not found
--- failed re-building ‘Using_fontHind.Rmd’

SUMMARY: processing the following file failed:
  ‘Using_fontHind.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Using_fontMPlus.Rmd’ using rmarkdown
Quitting from lines 56-67 (Using_fontMPlus.Rmd) 
Error: processing vignette 'Using_fontMPlus.Rmd' failed with diagnostics:
polygon edge not found
--- failed re-building ‘Using_fontMPlus.Rmd’

SUMMARY: processing the following file failed:
  ‘Using_fontMPlus.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘minet’
Error(s) in re-building vignettes:
  ...
--- re-building ‘Foodingraph_quickstart.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Foodingraph_quickstart.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Foodingraph_quickstart.Rmd’

SUMMARY: processing the following file failed:
  ‘Foodingraph_quickstart.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘foreach.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'foreach.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘foreach.Rmd’

--- re-building ‘nested.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'nested.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nested.Rmd’

SUMMARY: processing the following files failed:
  ‘foreach.Rmd’ ‘nested.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘forecastHybrid.Rmd’ using rmarkdown
Loading required package: forecast
Loading required package: thief
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'forecastHybrid.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘forecastHybrid.Rmd’

SUMMARY: processing the following file failed:
  ‘forecastHybrid.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘JSS2008.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'JSS2008.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘JSS2008.Rmd’

SUMMARY: processing the following file failed:
  ‘JSS2008.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction_to_ForecastTB.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction_to_ForecastTB.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction_to_ForecastTB.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_ForecastTB.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Vignette.Rmd’ using rmarkdown_notangle
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘Vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘formattable-data-frame.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 168-169 (formattable-data-frame.Rmd) 
Error: processing vignette 'formattable-data-frame.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘formattable-data-frame.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘formattable-data-frame.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction-to-formulaic.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction-to-formulaic.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction-to-formulaic.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction-to-formulaic.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'Rsocp', 'Rnlminb2', 'Rdonlp2', 'Rsymphony'
installed size is  8.3Mb
  sub-directories of 1Mb or more:
    help   1.6Mb
    libs   4.9Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘Package_summary.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Package_summary.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Package_summary.Rmd’

SUMMARY: processing the following file failed:
  ‘Package_summary.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘testthat.R’ [2s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  > 
  > test_check("fredr")
  ── 1. Failure: fredr_docs throws errors on invalid endpoints (@test_docs.R#8)  ─
  `fredr_docs(endpoint = "foo")` did not throw an error.
  
  ── 2. Failure: fredr_docs throws errors on invalid endpoints (@test_docs.R#9)  ─
  `fredr_docs(endpoint = "foo", params = TRUE)` did not throw an error.
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 65 | SKIPPED: 38 | WARNINGS: 0 | FAILED: 2 ]
  1. Failure: fredr_docs throws errors on invalid endpoints (@test_docs.R#8) 
  2. Failure: fredr_docs throws errors on invalid endpoints (@test_docs.R#9) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘exploring_included_data.Rmd’ using rmarkdown
Loading required package: oro.nifti
oro.nifti 0.10.1
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'exploring_included_data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘exploring_included_data.Rmd’

SUMMARY: processing the following file failed:
  ‘exploring_included_data.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   6.0Mb
installed size is 61.5Mb
  sub-directories of 1Mb or more:
    data   1.0Mb
    libs  59.8Mb
installed size is  8.4Mb
  sub-directories of 1Mb or more:
    doc    1.4Mb
    libs   6.1Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘shiny.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'shiny.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘shiny.Rmd’

SUMMARY: processing the following file failed:
  ‘shiny.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  7.7Mb
  sub-directories of 1Mb or more:
    data   4.8Mb
    doc    1.4Mb
installed size is 42.1Mb
  sub-directories of 1Mb or more:
    libs  41.6Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘fsbrain.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fsbrain.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fsbrain.Rmd’

SUMMARY: processing the following file failed:
  ‘fsbrain.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘RTCGA.rnaseq’
installed size is 10.0Mb
  sub-directories of 1Mb or more:
    libs   9.7Mb
Error(s) in re-building vignettes:
--- re-building ‘FSinR.Rmd’ using rmarkdown
Loading required package: lattice
Loading required package: ggplot2

Attaching package: 'FSinR'

The following object is masked from 'package:stats':

    ts

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'FSinR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘FSinR.Rmd’

--- re-building ‘methods.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'methods.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘methods.Rmd’

SUMMARY: processing the following files failed:
  ‘FSinR.Rmd’ ‘methods.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘dti_data.Rmd’ using rmarkdown
trying URL 'http://cmic.cs.ucl.ac.uk/camino//uploads/Tutorials/example_dwi.zip'
Content type 'application/zip' length 16129429 bytes (15.4 MB)
==================================================
downloaded 15.4 MB

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'dti_data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘dti_data.Rmd’

--- re-building ‘fslr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fslr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fslr.Rmd’

SUMMARY: processing the following files failed:
  ‘dti_data.Rmd’ ‘fslr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘function-comparisons.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'function-comparisons.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘function-comparisons.Rmd’

SUMMARY: processing the following file failed:
  ‘function-comparisons.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 15.4Mb
  sub-directories of 1Mb or more:
    libs  14.6Mb
Error(s) in re-building vignettes:
--- re-building ‘format_columns.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'format_columns.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘format_columns.Rmd’

--- re-building ‘group-rows.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'group-rows.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘group-rows.Rmd’

--- re-building ‘transform-headers.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'transform-headers.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘transform-headers.Rmd’

SUMMARY: processing the following files failed:
  ‘format_columns.Rmd’ ‘group-rows.Rmd’ ‘transform-headers.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘BioSeqClass’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘funneljoin.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'funneljoin'

The following object is masked from 'package:stats':

    filter

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'funneljoin.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘funneljoin.Rmd’

SUMMARY: processing the following file failed:
  ‘funneljoin.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘funnel_plots.Rmd’ using rmarkdown
Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: rlang
Loading required package: msme
Loading required package: MASS

Attaching package: 'MASS'

The following object is masked from 'package:dplyr':

    select

Loading required package: lattice
Loading required package: sandwich
OD_adjust set to FALSE, plotting using Poisson limits
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'funnel_plots.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘funnel_plots.Rmd’

SUMMARY: processing the following file failed:
  ‘funnel_plots.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘new_distinctiveness.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'new_distinctiveness.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘new_distinctiveness.Rmd’

--- re-building ‘rarity_indices.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rarity_indices.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rarity_indices.Rmd’

--- re-building ‘sparse_matrices.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sparse_matrices.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sparse_matrices.Rmd’

SUMMARY: processing the following files failed:
  ‘new_distinctiveness.Rmd’ ‘rarity_indices.Rmd’ ‘sparse_matrices.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 25.7Mb
  sub-directories of 1Mb or more:
    libs  25.6Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘subgroup_fusion.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'subgroup_fusion.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘subgroup_fusion.Rmd’

SUMMARY: processing the following file failed:
  ‘subgroup_fusion.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘futureheatwaves.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'futureheatwaves.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘futureheatwaves.Rmd’

--- re-building ‘starting_from_netcdf.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'starting_from_netcdf.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘starting_from_netcdf.Rmd’

SUMMARY: processing the following files failed:
  ‘futureheatwaves.Rmd’ ‘starting_from_netcdf.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘stringdist_join.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'stringdist_join.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘stringdist_join.Rmd’

SUMMARY: processing the following file failed:
  ‘stringdist_join.Rmd’

Error: Vignette re-building failed.
Execution halted
Package unavailable to check Rd xrefs: ‘cffdrs’
Error(s) in re-building vignettes:
  ...
--- re-building ‘fxtract.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fxtract.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fxtract.Rmd’

SUMMARY: processing the following file failed:
  ‘fxtract.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘KEGGREST’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘chart_themes.Rmd’ using rmarkdown
g3viz: visualizing gene/genome/gentics data for fun.
Any questions, please send emails to <g3viz.group@gmail.com>
Please send questions to cbioportal@googlegroups.com
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'chart_themes.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘chart_themes.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
g3viz: visualizing gene/genome/gentics data for fun.
Any questions, please send emails to <g3viz.group@gmail.com>
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following files failed:
  ‘chart_themes.Rmd’ ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gama.Rmd’ using rmarkdown
Package 'gama', version 1.0.3
Type 'citation("gama")' for citing this R package in publications.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gama.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gama.Rmd’

SUMMARY: processing the following file failed:
  ‘gama.Rmd’

Error: Vignette re-building failed.
Execution halted
Package which this enhances but not available for checking: ‘doMPI’
Packages suggested but not available for checking: 'R2jags', 'regress'
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    doc    1.7Mb
    libs   4.1Mb
installed size is 78.9Mb
  sub-directories of 1Mb or more:
    libs  78.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘gastempt.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gastempt.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gastempt.Rmd’

SUMMARY: processing the following file failed:
  ‘gastempt.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 59.3Mb
  sub-directories of 1Mb or more:
    extdata   1.6Mb
    libs     56.0Mb
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    libs   4.3Mb
installed size is 16.8Mb
  sub-directories of 1Mb or more:
    doc    1.1Mb
    libs  15.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘gbp-vignette.Rmd’ using rmarkdown
Loading required package: magrittr
Loading required package: data.table
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gbp-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gbp-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘gbp-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Examples.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Examples.Rmd’

SUMMARY: processing the following file failed:
  ‘Examples.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘GCalignR_How_does_the_Algorithm_work.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GCalignR_How_does_the_Algorithm_work.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GCalignR_How_does_the_Algorithm_work.Rmd’

--- re-building ‘GCalignR_step_by_step.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GCalignR_step_by_step.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GCalignR_step_by_step.Rmd’

SUMMARY: processing the following files failed:
  ‘GCalignR_How_does_the_Algorithm_work.Rmd’
  ‘GCalignR_step_by_step.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gcbd.Rnw’ using Sweave
Warning in packageDescription("gputools") :
  no package 'gputools' was found
Error: processing vignette 'gcbd.Rnw' failed with diagnostics:
at gcbd.Rnw:860, subscript out of bounds
--- failed re-building ‘gcbd.Rnw’

SUMMARY: processing the following file failed:
  ‘gcbd.Rnw’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gcForest-docs.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gcForest-docs.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gcForest-docs.Rmd’

SUMMARY: processing the following file failed:
  ‘gcForest-docs.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 174.6Mb
  sub-directories of 1Mb or more:
    L8NY18    2.2Mb
    libs    171.1Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘GDINA.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GDINA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GDINA.Rmd’

SUMMARY: processing the following file failed:
  ‘GDINA.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘GEint_example.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GEint_example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GEint_example.Rmd’

SUMMARY: processing the following file failed:
  ‘GEint_example.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘compare-with-GEMMAv096.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'compare-with-GEMMAv096.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘compare-with-GEMMAv096.Rmd’

SUMMARY: processing the following file failed:
  ‘compare-with-GEMMAv096.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘genbart-vignette.Rmd’ using rmarkdown
Welcome to genBart! To get started, it is recommended to walk 
through the vignette. It can be accessed through browseVignettes("genBart").
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'genbart-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘genbart-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘genbart-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘predicting-gender.Rmd’ using rmarkdown
PLEASE NOTE: The method provided by this package must be used cautiously
and responsibly. Please be sure to see the guidelines and warnings about
usage in the README or the package documentation.

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'predicting-gender.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘predicting-gender.Rmd’

SUMMARY: processing the following file failed:
  ‘predicting-gender.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Visualisation_of_Raw_or_Segmented_Accelerometer_Data_using_GENEAsphere.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Visualisation_of_Raw_or_Segmented_Accelerometer_Data_using_GENEAsphere.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Visualisation_of_Raw_or_Segmented_Accelerometer_Data_using_GENEAsphere.Rmd’

SUMMARY: processing the following file failed:
  ‘Visualisation_of_Raw_or_Segmented_Accelerometer_Data_using_GENEAsphere.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.7Mb
  sub-directories of 1Mb or more:
    libs   8.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘GeneralizedUmatrix.Rmd’ using rmarkdown
Loading required package: DataVisualizations
Loading required namespace: mgcv
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GeneralizedUmatrix.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GeneralizedUmatrix.Rmd’

SUMMARY: processing the following file failed:
  ‘GeneralizedUmatrix.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘tutorial.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tutorial.Rmd’

--- re-building ‘validation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'validation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘validation.Rmd’

SUMMARY: processing the following files failed:
  ‘tutorial.Rmd’ ‘validation.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘lfa’
Error(s) in re-building vignettes:
  ...
--- re-building ‘genio.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'genio.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘genio.Rmd’

SUMMARY: processing the following file failed:
  ‘genio.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking: 'KEGG.db', 'reactome.db'
Error(s) in re-building vignettes:
  ...
--- re-building ‘genotypeR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'genotypeR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘genotypeR.Rmd’

SUMMARY: processing the following file failed:
  ‘genotypeR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘intro_to_geobr.Rmd’ using rmarkdown
Loading required namespace: sf
Linking to GEOS 3.7.2, GDAL 2.4.2, PROJ 5.2.0

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Using year 2017
Loading data for the whole country. This might take a few minutes.

Using year 2014
Loading data for the whole country

Using year 2000
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro_to_geobr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro_to_geobr.Rmd’

SUMMARY: processing the following file failed:
  ‘intro_to_geobr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘geodetector.Rmd’ using rmarkdown
rgeos version: 0.5-2, (SVN revision 621)
 GEOS runtime version: 3.7.2-CAPI-1.11.2 
 Linking to sp version: 1.4-1 
 Polygon checking: TRUE 

Checking rgeos availability: TRUE
Warning in file(file, ifelse(append, "a", "w")) :
  cannot open file './Geodetector_R/
          output_interaction_detector.csv': No such file or directory
Warning in file(file, ifelse(append, "a", "w")) :
  cannot open file './Geodetector_R/
          output_ecological_detector.csv': No such file or directory
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'geodetector.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘geodetector.Rmd’

SUMMARY: processing the following file failed:
  ‘geodetector.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘test-all.R’ [10s/14s]
Running the tests in ‘tests/test-all.R’ failed.
Last 13 lines of output:
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 384 | SKIPPED: 23 | WARNINGS: 0 | FAILED: 10 ]
  1.  Error: works with sf (@test-crs_convert.R#26) 
  2.  Error: works with sfc (@test-crs_convert.R#35) 
  3.  Error: allows supplying a CRS with sf (@test-crs_convert.R#57) 
  4.  Error: allows supplying a CRS with sfc (@test-crs_convert.R#62) 
  5.  Error: is_wgs84 works with sf (@test-crs_convert.R#67) 
  6.  Error: is_wgs84 works with sfc (@test-crs_convert.R#74) 
  7.  Error: geojson_list: convert_wgs84 works with sf classes (@test-crs_convert.R#103) 
  8.  Error: geojson_json: convert_wgs84 works with sf classes (@test-crs_convert.R#129) 
  9.  Error: geojson_write: convert_wgs84 works with sf classes (@test-crs_convert.R#159) 
  10. Failure: topojson_read works with file inputs (@test-topojson_read.R#11) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘geojson_spec.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'geojson_spec.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘geojson_spec.Rmd’

--- re-building ‘geojsonio.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'geojsonio.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘geojsonio.Rmd’

--- re-building ‘maps.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'maps.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘maps.Rmd’

SUMMARY: processing the following files failed:
  ‘geojson_spec.Rmd’ ‘geojsonio.Rmd’ ‘maps.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc    1.3Mb
    libs   4.7Mb
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    help   1.3Mb
    libs   3.9Mb
Error(s) in re-building vignettes:
--- re-building ‘custom_data_sources.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'custom_data_sources.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘custom_data_sources.Rmd’

--- re-building ‘geoknife.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'geoknife.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘geoknife.Rmd’

--- re-building ‘plot_geotiff.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'plot_geotiff.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘plot_geotiff.Rmd’

SUMMARY: processing the following files failed:
  ‘custom_data_sources.Rmd’ ‘geoknife.Rmd’ ‘plot_geotiff.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘geometr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'geometr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘geometr.Rmd’

SUMMARY: processing the following file failed:
  ‘geometr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘geomorph.assistance.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'geomorph.assistance.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘geomorph.assistance.Rmd’

--- re-building ‘geomorph.digitize3D.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'geomorph.digitize3D.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘geomorph.digitize3D.Rmd’

--- re-building ‘geomorph.functions.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'geomorph.functions.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘geomorph.functions.Rmd’

SUMMARY: processing the following files failed:
  ‘geomorph.assistance.Rmd’ ‘geomorph.digitize3D.Rmd’
  ‘geomorph.functions.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs   4.9Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘geouy.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'geouy.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘geouy.Rmd’

SUMMARY: processing the following file failed:
  ‘geouy.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘hawaii_mapzen_dem.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hawaii_mapzen_dem.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hawaii_mapzen_dem.Rmd’

--- re-building ‘scene_with_gps_trace.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'scene_with_gps_trace.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘scene_with_gps_trace.Rmd’

SUMMARY: processing the following files failed:
  ‘hawaii_mapzen_dem.Rmd’ ‘scene_with_gps_trace.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘GerminaR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GerminaR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GerminaR.Rmd’

SUMMARY: processing the following file failed:
  ‘GerminaR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘event_prediction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'event_prediction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘event_prediction.Rmd’

--- re-building ‘trial_planning.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'trial_planning.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘trial_planning.Rmd’

SUMMARY: processing the following files failed:
  ‘event_prediction.Rmd’ ‘trial_planning.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘GetBCBData-vignette.Rmd’ using rmarkdown
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.0 ──
✔ ggplot2 3.3.0     ✔ purrr   0.3.3
✔ tibble  2.1.3     ✔ dplyr   0.8.5
✔ tidyr   1.0.2     ✔ stringr 1.4.0
✔ readr   1.3.1     ✔ forcats 0.5.0
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag()    masks stats::lag()

Fetching Unemp. rate - Germany [3785] from BCB-SGS with cache 
	 Found 199 observations
Fetching Unemp. rate - Canada [3786] from BCB-SGS with cache 
	 Found 200 observations
Fetching Unemp. rate - USA [3787] from BCB-SGS with cache 
	 Found 200 observations
Fetching Unemp. rate - France [3788] from BCB-SGS with cache 
	 Found 199 observations
Fetching Unemp. rate - Italy [3789] from BCB-SGS with cache 
	 Found 199 observations
Fetching Unemp. rate - Japan [3790] from BCB-SGS with cache 
	 Found 199 observations
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GetBCBData-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GetBCBData-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘GetBCBData-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gdfpd-vignette-introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gdfpd-vignette-introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gdfpd-vignette-introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘gdfpd-vignette-introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘ghfd-vignette-LOB.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ghfd-vignette-LOB.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ghfd-vignette-LOB.Rmd’

--- re-building ‘ghfd-vignette-Orders.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ghfd-vignette-Orders.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ghfd-vignette-Orders.Rmd’

--- re-building ‘ghfd-vignette-Trades.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ghfd-vignette-Trades.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ghfd-vignette-Trades.Rmd’

SUMMARY: processing the following files failed:
  ‘ghfd-vignette-LOB.Rmd’ ‘ghfd-vignette-Orders.Rmd’
  ‘ghfd-vignette-Trades.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gld_vignette-ReadLattes.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gld_vignette-ReadLattes.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gld_vignette-ReadLattes.Rmd’

SUMMARY: processing the following file failed:
  ‘gld_vignette-ReadLattes.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘getmstatistic-tutorial.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'getmstatistic-tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘getmstatistic-tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘getmstatistic-tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘getquandldata-vignette-introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'getquandldata-vignette-introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘getquandldata-vignette-introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘getquandldata-vignette-introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘getspres-tutorial.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'getspres-tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘getspres-tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘getspres-tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘gtdd-vignette_GetTDData.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gtdd-vignette_GetTDData.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gtdd-vignette_GetTDData.Rmd’

--- re-building ‘gtdd-vignette_YieldCurve.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gtdd-vignette_YieldCurve.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gtdd-vignette_YieldCurve.Rmd’

SUMMARY: processing the following files failed:
  ‘gtdd-vignette_GetTDData.Rmd’ ‘gtdd-vignette_YieldCurve.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘RGtk2’
Error(s) in re-building vignettes:
  ...
--- re-building ‘IntroductionToGFD.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 106-107 (IntroductionToGFD.Rmd) 
Error: processing vignette 'IntroductionToGFD.Rmd' failed with diagnostics:
there is no package called 'RGtk2'
--- failed re-building ‘IntroductionToGFD.Rmd’

SUMMARY: processing the following file failed:
  ‘IntroductionToGFD.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gfer.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gfer.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gfer.Rmd’

SUMMARY: processing the following file failed:
  ‘gfer.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gfmr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gfmr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gfmr.Rmd’

SUMMARY: processing the following file failed:
  ‘gfmr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘ggalluvial.rmd’ using rmarkdown
Loading required package: ggplot2
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggalluvial.rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggalluvial.rmd’

--- re-building ‘labels.rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'labels.rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘labels.rmd’

--- re-building ‘order-rectangles.rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'order-rectangles.rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘order-rectangles.rmd’

SUMMARY: processing the following files failed:
  ‘ggalluvial.rmd’ ‘labels.rmd’ ‘order-rectangles.rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gganimate.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gganimate.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gganimate.Rmd’

SUMMARY: processing the following file failed:
  ‘gganimate.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘ggasym-corrr.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggasym-corrr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggasym-corrr.Rmd’

--- re-building ‘ggasym-stats.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggasym-stats.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggasym-stats.Rmd’

SUMMARY: processing the following files failed:
  ‘ggasym-corrr.Rmd’ ‘ggasym-stats.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggBubbles.Rmd’ using rmarkdown
Error: processing vignette 'ggBubbles.Rmd' failed with diagnostics:
there is no package called ‘BiocStyle’
--- failed re-building ‘ggBubbles.Rmd’

SUMMARY: processing the following file failed:
  ‘ggBubbles.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘highlight.Rmd’ using rmarkdown
Loading required package: ggplot2

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'highlight.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘highlight.Rmd’

SUMMARY: processing the following file failed:
  ‘highlight.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction-to-ggconf.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction-to-ggconf.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction-to-ggconf.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction-to-ggconf.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggdemetra.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggdemetra.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggdemetra.Rmd’

SUMMARY: processing the following file failed:
  ‘ggdemetra.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘geom_posterior.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'geom_posterior.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘geom_posterior.Rmd’

SUMMARY: processing the following file failed:
  ‘geom_posterior.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘shortcuts.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'shortcuts.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘shortcuts.Rmd’

--- re-building ‘tests_and_coverage.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tests_and_coverage.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tests_and_coverage.Rmd’

SUMMARY: processing the following files failed:
  ‘shortcuts.Rmd’ ‘tests_and_coverage.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘GGEBiplotGUI-Ex.R’ failed
The error most likely occurred in:

> ### Name: GGEBiplot
> ### Title: GGEBiplotGUI: Interactive GGE Biplots in R
> ### Aliases: GGEBiplot
> 
> ### ** Examples
> 
> data(Ontario)
> GGEBiplot(Data = Ontario)
Warning in tclRequire("BWidget") : Tcl package 'BWidget' not found
Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") : 
  [tcl] invalid command name "ComboBox".
Calls: GGEBiplot -> tkwidget -> tcl -> .Tcl.objv -> structure
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gge_examples.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gge_examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gge_examples.Rmd’

SUMMARY: processing the following file failed:
  ‘gge_examples.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggExtra.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggExtra.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggExtra.Rmd’

SUMMARY: processing the following file failed:
  ‘ggExtra.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘geom_fan.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'geom_fan.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘geom_fan.Rmd’

--- re-building ‘ggfan_stan.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggfan_stan.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggfan_stan.Rmd’

SUMMARY: processing the following files failed:
  ‘geom_fan.Rmd’ ‘ggfan_stan.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction-to-ggfittext.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction-to-ggfittext.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction-to-ggfittext.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction-to-ggfittext.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘introduction_to_ggfocus.Rmd’ using rmarkdown
Loading required package: ggplot2

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

`stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction_to_ggfocus.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction_to_ggfocus.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction_to_ggfocus.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 20.7Mb
  sub-directories of 1Mb or more:
    help   1.1Mb
    libs  18.8Mb
Error(s) in re-building vignettes:
--- re-building ‘ggformula-blog.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggformula-blog.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggformula-blog.Rmd’

--- re-building ‘ggformula.Rmd’ using rmarkdown
Warning: Computation failed in `stat_density2d()`:
missing value where TRUE/FALSE needed
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggformula.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggformula.Rmd’

--- re-building ‘learn-more.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'learn-more.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘learn-more.Rmd’

SUMMARY: processing the following files failed:
  ‘ggformula-blog.Rmd’ ‘ggformula.Rmd’ ‘learn-more.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction-to-gggenes.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction-to-gggenes.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction-to-gggenes.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction-to-gggenes.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gggibbous.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gggibbous.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gggibbous.Rmd’

SUMMARY: processing the following file failed:
  ‘gggibbous.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gghalves.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gghalves.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gghalves.Rmd’

SUMMARY: processing the following file failed:
  ‘gghalves.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gghighlight.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gghighlight.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gghighlight.Rmd’

SUMMARY: processing the following file failed:
  ‘gghighlight.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘package_intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'package_intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘package_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘package_intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘user-guide-1.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'user-guide-1.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘user-guide-1.Rmd’

--- re-building ‘user-guide-2.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'user-guide-2.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘user-guide-2.Rmd’

SUMMARY: processing the following files failed:
  ‘user-guide-1.Rmd’ ‘user-guide-2.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gglogo-alphabet.Rmd’ using rmarkdown

Attaching package: 'gglogo'

The following object is masked from 'package:ggplot2':

    fortify

Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y,  :
  no font could be found for family "Garamond"
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y,  :
  no font could be found for family "Garamond"
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y,  :
  no font could be found for family "Garamond"
Quitting from lines 45-52 (gglogo-alphabet.Rmd) 
Error: processing vignette 'gglogo-alphabet.Rmd' failed with diagnostics:
replacement has 1 row, data has 0
--- failed re-building ‘gglogo-alphabet.Rmd’

SUMMARY: processing the following file failed:
  ‘gglogo-alphabet.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggmosaic.Rmd’ using rmarkdown
Loading required package: ggplot2
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggmosaic.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggmosaic.Rmd’

SUMMARY: processing the following file failed:
  ‘ggmosaic.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘treeio’

Package suggested but not available for checking: ‘ggtree’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggmuller.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggmuller.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggmuller.Rmd’

SUMMARY: processing the following file failed:
  ‘ggmuller.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘ggnetwork.Rmd’ using rmarkdown
network: Classes for Relational Data
Version 1.16.0 created on 2019-11-30.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
                    Mark S. Handcock, University of California -- Los Angeles
                    David R. Hunter, Penn State University
                    Martina Morris, University of Washington
                    Skye Bender-deMoll, University of Washington
 For citation information, type citation("network").
 Type help("network-package") to get started.

Loading required package: statnet.common

Attaching package: 'statnet.common'

The following object is masked from 'package:base':

    order

sna: Tools for Social Network Analysis
Version 2.5 created on 2019-12-09.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
 For citation information, type citation("sna").
 Type help(package="sna") to get started.

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggnetwork.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggnetwork.Rmd’

SUMMARY: processing the following file failed:
  ‘ggnetwork.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘different-features.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'different-features.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘different-features.Rmd’

SUMMARY: processing the following file failed:
  ‘different-features.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘ggparty-graphic-partying.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggparty-graphic-partying.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggparty-graphic-partying.Rmd’

--- re-building ‘on-the-edge.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: partykit
Loading required package: grid
Loading required package: libcoin
Loading required package: mvtnorm
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'on-the-edge.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘on-the-edge.Rmd’

SUMMARY: processing the following files failed:
  ‘ggparty-graphic-partying.Rmd’ ‘on-the-edge.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘wraping-around-ggplot2.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'wraping-around-ggplot2.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘wraping-around-ggplot2.Rmd’

SUMMARY: processing the following file failed:
  ‘wraping-around-ggplot2.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘extending-ggplot2.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'extending-ggplot2.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘extending-ggplot2.Rmd’

--- re-building ‘ggplot2-in-packages.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggplot2-in-packages.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggplot2-in-packages.Rmd’

--- re-building ‘ggplot2-specs.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggplot2-specs.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggplot2-specs.Rmd’

SUMMARY: processing the following files failed:
  ‘extending-ggplot2.Rmd’ ‘ggplot2-in-packages.Rmd’ ‘ggplot2-specs.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggplotAssist.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggplotAssist.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggplotAssist.Rmd’

SUMMARY: processing the following file failed:
  ‘ggplotAssist.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘user-guide.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘user-guide.Rmd’

SUMMARY: processing the following file failed:
  ‘user-guide.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggpolypath.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggpolypath.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggpolypath.Rmd’

SUMMARY: processing the following file failed:
  ‘ggpolypath.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘XbarR_HOTTO.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'XbarR_HOTTO.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘XbarR_HOTTO.Rmd’

--- re-building ‘XmR_HOWTO.Rmd’ using rmarkdown
Warning: Ignoring unknown parameters: method
Warning: Ignoring unknown parameters: method
Warning: Duplicated aesthetics after name standardisation: method
Warning: Duplicated aesthetics after name standardisation: method
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'XmR_HOWTO.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘XmR_HOWTO.Rmd’

SUMMARY: processing the following files failed:
  ‘XbarR_HOTTO.Rmd’ ‘XmR_HOWTO.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘ggquickeda.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggquickeda.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggquickeda.Rmd’

--- re-building ‘AdditionalPlotsStats.Rmd’ using rmarkdown_notangle
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'AdditionalPlotsStats.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘AdditionalPlotsStats.Rmd’

SUMMARY: processing the following files failed:
  ‘ggquickeda.Rmd’ ‘AdditionalPlotsStats.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    doc    3.6Mb
    libs   2.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggraptR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggraptR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggraptR.Rmd’

SUMMARY: processing the following file failed:
  ‘ggraptR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: Matrix
Fontconfig error: Cannot load default config file
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggsci.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggsci.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggsci.Rmd’

SUMMARY: processing the following file failed:
  ‘ggsci.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggseas.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggseas.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggseas.Rmd’

SUMMARY: processing the following file failed:
  ‘ggseas.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggseqlogo_introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggseqlogo_introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggseqlogo_introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘ggseqlogo_introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggspatial.Rmd’ using rmarkdown
Zoom: 13
Assuming crs = 4326 in stat_spatial_identity()
Assuming crs = 4326 in stat_spatial_identity()
Zoom: 3
Fetching 5 missing tiles
...complete!
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggspatial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggspatial.Rmd’

SUMMARY: processing the following file failed:
  ‘ggspatial.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggstar.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggstar.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggstar.Rmd’

SUMMARY: processing the following file failed:
  ‘ggstar.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘additional.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'additional.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘additional.Rmd’

SUMMARY: processing the following file failed:
  ‘additional.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘ggswissmaps_intro.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggswissmaps_intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggswissmaps_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘ggswissmaps_intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/ggtern.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggTimeSeries.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggTimeSeries.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggTimeSeries.Rmd’

SUMMARY: processing the following file failed:
  ‘ggTimeSeries.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘ggvoronoi.Rmd’ using rmarkdown
Scale for 'x' is already present. Adding another scale for 'x', which will
replace the existing scale.
Scale for 'y' is already present. Adding another scale for 'y', which will
replace the existing scale.
Coordinate system already present. Adding new coordinate system, which will replace the existing one.
Coordinate system already present. Adding new coordinate system, which will replace the existing one.

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ggvoronoi.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ggvoronoi.Rmd’

SUMMARY: processing the following file failed:
  ‘ggvoronoi.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘what-is-gibble.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'what-is-gibble.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘what-is-gibble.Rmd’

SUMMARY: processing the following file failed:
  ‘what-is-gibble.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc    1.6Mb
    libs   3.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘gimme_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gimme_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gimme_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘gimme_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gitgadget.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gitgadget.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gitgadget.Rmd’

SUMMARY: processing the following file failed:
  ‘gitgadget.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘githubinstall.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'githubinstall.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘githubinstall.Rmd’

SUMMARY: processing the following file failed:
  ‘githubinstall.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg18.masked',
  'BSgenome.Hsapiens.UCSC.hg19.masked'
installed size is 10.1Mb
  sub-directories of 1Mb or more:
    libs  10.0Mb
Error(s) in re-building vignettes:
--- re-building ‘glancedata.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'glancedata.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘glancedata.Rmd’

SUMMARY: processing the following file failed:
  ‘glancedata.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘running-glassdoor.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'running-glassdoor.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘running-glassdoor.Rmd’

SUMMARY: processing the following file failed:
  ‘running-glassdoor.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 64.3Mb
  sub-directories of 1Mb or more:
    libs  63.2Mb
installed size is 13.0Mb
  sub-directories of 1Mb or more:
    libs  12.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘glmaag.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'glmaag.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘glmaag.Rmd’

SUMMARY: processing the following file failed:
  ‘glmaag.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘quick_use.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'quick_use.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘quick_use.Rmd’

SUMMARY: processing the following file failed:
  ‘quick_use.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 41.5Mb
  sub-directories of 1Mb or more:
    libs  40.8Mb
Error(s) in re-building vignettes:
--- re-building ‘spatial-glms.Rmd’ using rmarkdown
Loading required package: Rcpp

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Waiting for profiling to be done...
`geom_smooth()` using formula 'y ~ x'
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'spatial-glms.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘spatial-glms.Rmd’

SUMMARY: processing the following file failed:
  ‘spatial-glms.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 43.8Mb
  sub-directories of 1Mb or more:
    libs  42.9Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘glmmsr-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'glmmsr-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘glmmsr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘glmmsr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 63.7Mb
  sub-directories of 1Mb or more:
    doc         1.2Mb
    libs       60.1Mb
    test_data   1.2Mb
glmulti,character-character-ANY-ANY: no visible global function
  definition for ‘regsubsets’
Undefined global functions or variables:
  regsubsets
Error(s) in re-building vignettes:
--- re-building ‘speed.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'speed.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘speed.Rmd’

--- re-building ‘transformers.Rmd’ using rmarkdown
hello!
Loading required package: emo
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'emo'
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'transformers.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘transformers.Rmd’

SUMMARY: processing the following files failed:
  ‘speed.Rmd’ ‘transformers.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘gluvarpro-Ex.R’ failed
The error most likely occurred in:

> ### Name: preprocessgvp
> ### Title: preprocessing raw data from continuous glucose monitoring
> ### Aliases: preprocessgvp
> 
> ### ** Examples
> 
> data("datagvp4")
> preprocessgvp(datagvp4)
Error in preprocessgvp(datagvp4) : 
  Variable date and time must have yyyy/mm/dd and hh:mm:ss format.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘gmailr.Rmd’ using rmarkdown

Attaching package: 'gmailr'

The following object is masked from 'package:utils':

    history

The following objects are masked from 'package:base':

    body, date, labels, message

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gmailr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gmailr.Rmd’

--- re-building ‘sending_messages.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sending_messages.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sending_messages.Rmd’

SUMMARY: processing the following files failed:
  ‘gmailr.Rmd’ ‘sending_messages.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.9Mb
  sub-directories of 1Mb or more:
    libs   9.8Mb
Packages required but not available: 'SeqArray', 'SeqVarTools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘bi-objective.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'bi-objective.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘bi-objective.Rmd’

--- re-building ‘polytope_2d.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'polytope_2d.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘polytope_2d.Rmd’

--- re-building ‘polytope_3d.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'polytope_3d.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘polytope_3d.Rmd’

SUMMARY: processing the following files failed:
  ‘bi-objective.Rmd’ ‘polytope_2d.Rmd’ ‘polytope_3d.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  Evaluation.cpp:173:9: warning: reference cannot be bound to dereferenced null pointer in well-defined C++ code; comparison may be assumed to always evaluate to true [-Wtautological-undefined-compare]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/gnmf.Rcheck/00install.out’ for details.
File ‘gnmf/libs/gnmf.so’:
  Found ‘_rand’, possibly from ‘rand’ (C)
    Object: ‘FactorMatrix.o’
  Found ‘_srand’, possibly from ‘srand’ (C)
    Object: ‘FactorMatrix.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Error(s) in re-building vignettes:
--- re-building ‘overexpression-analysis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'overexpression-analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘overexpression-analysis.Rmd’

--- re-building ‘quick-start.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'quick-start.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘quick-start.Rmd’

SUMMARY: processing the following files failed:
  ‘overexpression-analysis.Rmd’ ‘quick-start.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘custom_checks.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'custom_checks.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘custom_checks.Rmd’

--- re-building ‘goodpractice.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'goodpractice.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘goodpractice.Rmd’

SUMMARY: processing the following files failed:
  ‘custom_checks.Rmd’ ‘goodpractice.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘googleCloudStorageR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'googleCloudStorageR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘googleCloudStorageR.Rmd’

SUMMARY: processing the following file failed:
  ‘googleCloudStorageR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘googledrive.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'googledrive.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘googledrive.Rmd’

SUMMARY: processing the following file failed:
  ‘googledrive.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘googleway-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'googleway-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘googleway-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘googleway-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘GOplot_vignette.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: ggdendro
Loading required package: gridExtra
Loading required package: RColorBrewer
Warning: Using size for a discrete variable is not advised.
Warning: Removed 7 rows containing missing values (geom_point).
Warning: Using size for a discrete variable is not advised.
Warning: Removed 7 rows containing missing values (geom_point).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GOplot_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GOplot_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘GOplot_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘gpairs-Ex.R’ failed
The error most likely occurred in:

> ### Name: gpairs
> ### Title: Generalized Pairs Plots
> ### Aliases: gpairs corrgram
> ### Keywords: ts multivariate
> 
> ### ** Examples
> 
> 
> allexamples <- FALSE
> 
> y <- data.frame(A=c(rep("red", 100), rep("blue", 100)),
+                 B=c(rnorm(100),round(rnorm(100,5,1),1)), C=runif(200),
+                 D=c(rep("big", 150), rep("small", 50)),
+                 E=rnorm(200))
> gpairs(y)
Warning in diag.panel(x[, i], names(x)[i], diag.pars, axis.pars, xpos, ypos,  :
  NAs introduced by coercion
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Warning in diag.panel(x[, i], names(x)[i], diag.pars, axis.pars, xpos, ypos,  :
  NAs introduced by coercion
Warning in max(as.numeric(x), na.rm = TRUE) :
  no non-missing arguments to max; returning -Inf
Warning in diag.panel(x[, i], names(x)[i], diag.pars, axis.pars, xpos, ypos,  :
  NAs introduced by coercion
Warning in min(as.numeric(x), na.rm = TRUE) :
  no non-missing arguments to min; returning Inf
Warning in diag.panel(x[, i], names(x)[i], diag.pars, axis.pars, xpos, ypos,  :
  NAs introduced by coercion
Warning in max(as.numeric(x), na.rm = TRUE) :
  no non-missing arguments to max; returning -Inf
Warning in diag.panel(x[, i], names(x)[i], diag.pars, axis.pars, xpos, ypos,  :
  NAs introduced by coercion
Warning in min(as.numeric(x), na.rm = TRUE) :
  no non-missing arguments to min; returning Inf
Error in valid.viewport(x, y, width, height, just, gp, clip, xscale, yscale,  : 
  invalid 'xscale' in viewport
Calls: gpairs ... diag.panel -> pushViewport -> viewport -> valid.viewport
Execution halted
Running ‘Harman.R’ [39s/66s]
  Running ‘Jennrich2002.R’ [0s/1s]
  Running ‘MASSoblimin.R’ [38s/60s]
  Running ‘Revelle.R’ [0s/0s]
  Running ‘Thurstone.R’ [36s/50s]
  Running ‘WansbeekMeijer.R’ [26s/43s]
Running the tests in ‘tests/WansbeekMeijer.R’ failed.
Complete output:
  >  Sys.getenv("R_LIBS")
  [1] "/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/GPArotation.Rcheck:/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.0:/Volumes/Builds/packages/high-sierra-x86_64/extralib/4.0"
  >  library()
  
  Execution halted
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    data   1.4Mb
    libs   5.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘LyapuUse.Rmd’ using rmarkdown
Loading required package: deSolve
Loading required package: rgl
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'LyapuUse.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘LyapuUse.Rmd’

SUMMARY: processing the following file failed:
  ‘LyapuUse.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘GPrank.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GPrank.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GPrank.Rmd’

SUMMARY: processing the following file failed:
  ‘GPrank.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gprofiler2.Rmd’ using rmarkdown
Fontconfig error: Cannot load default config file
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gprofiler2.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gprofiler2.Rmd’

SUMMARY: processing the following file failed:
  ‘gprofiler2.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 48.2Mb
  sub-directories of 1Mb or more:
    libs  45.8Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘gradeR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gradeR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gradeR.Rmd’

SUMMARY: processing the following file failed:
  ‘gradeR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘MPG_algorithm.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MPG_algorithm.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MPG_algorithm.Rmd’

--- re-building ‘grainscape_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'grainscape_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘grainscape_vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘MPG_algorithm.Rmd’ ‘grainscape_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘vignette_graph4lg.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette_graph4lg.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette_graph4lg.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette_graph4lg.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 11.8Mb
  sub-directories of 1Mb or more:
    libs  11.6Mb
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    help   2.4Mb
    libs   3.0Mb
Error(s) in re-building vignettes:
--- re-building ‘cricket.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'cricket.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘cricket.Rmd’

--- re-building ‘gravitas_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gravitas_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gravitas_vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘cricket.Rmd’ ‘gravitas_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘crash-course-on-gravity-models.Rmd’ using rmarkdown

Attaching package: 'gravity'

The following object is masked from 'package:stats':

    nls

Warning: step size truncated due to increasing deviance
Warning: step size truncated due to increasing deviance
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'crash-course-on-gravity-models.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘crash-course-on-gravity-models.Rmd’

--- re-building ‘creating-gravity-datasets.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'creating-gravity-datasets.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘creating-gravity-datasets.Rmd’

SUMMARY: processing the following files failed:
  ‘crash-course-on-gravity-models.Rmd’ ‘creating-gravity-datasets.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 15.0Mb
  sub-directories of 1Mb or more:
    libs  14.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘index.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'index.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘index.Rmd’

SUMMARY: processing the following file failed:
  ‘index.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gripp_details.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gripp_details.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gripp_details.Rmd’

SUMMARY: processing the following file failed:
  ‘gripp_details.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.2Mb
  sub-directories of 1Mb or more:
    libs   8.8Mb
installed size is 12.3Mb
  sub-directories of 1Mb or more:
    libs  11.8Mb
Error(s) in re-building vignettes:
--- re-building ‘GSODR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GSODR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GSODR.Rmd’

--- re-building ‘Spatial.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Spatial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Spatial.Rmd’

--- re-building ‘Working_with_spatial_and_climate_data.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Working_with_spatial_and_climate_data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Working_with_spatial_and_climate_data.Rmd’

SUMMARY: processing the following files failed:
  ‘GSODR.Rmd’ ‘Spatial.Rmd’ ‘Working_with_spatial_and_climate_data.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gsw.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gsw.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gsw.Rmd’

SUMMARY: processing the following file failed:
  ‘gsw.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘profiling.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 22-34 (profiling.Rmd) 
Error: processing vignette 'profiling.Rmd' failed with diagnostics:
package or namespace load failed for 'ggplot2' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'glue'
--- failed re-building ‘profiling.Rmd’

SUMMARY: processing the following file failed:
  ‘profiling.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘intro_to_gtfs2gps.Rmd’ using rmarkdown
Linking to GEOS 3.7.2, GDAL 2.4.2, PROJ 5.2.0
Unzipping and reading sao_small.zip
Converting shapes to sf objects
Using 1 CPU core
Processing the data
Unzipping and reading poa.zip
Converting shapes to sf objects
Using 1 CPU core
Processing the data
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro_to_gtfs2gps.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro_to_gtfs2gps.Rmd’

SUMMARY: processing the following file failed:
  ‘intro_to_gtfs2gps.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘gt’
Error(s) in re-building vignettes:
  ...
--- re-building ‘GuessCompx.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GuessCompx.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GuessCompx.Rmd’

SUMMARY: processing the following file failed:
  ‘GuessCompx.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gunsales.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gunsales.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gunsales.Rmd’

SUMMARY: processing the following file failed:
  ‘gunsales.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘intro.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Determining mirror for Project Gutenberg from http://www.gutenberg.org/robot/harvest
Using mirror http://aleph.gutenberg.org
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro.Rmd’

SUMMARY: processing the following file failed:
  ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘GWASinspector.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GWASinspector.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GWASinspector.Rmd’

SUMMARY: processing the following file failed:
  ‘GWASinspector.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘run-tests.R’ [4s/8s]
Running the tests in ‘tests/run-tests.R’ failed.
Last 13 lines of output:
   4: initialize(value, ...)
   5: initialize(value, ...)
   6: methods::new(def, ...)
   7: GSlider$new(toolkit, from, to, by, value, horizontal, handler,     action, container, ...)
   8: .gslider.guiWidgetsToolkitRGtk2(toolkit, from, to, by, value,     horizontal, handler, action, container = container, ...)
   9: .gslider(toolkit, from, to, by, value, horizontal, handler, action,     container = container, ...)
  10: gslider(from = 0, to = 100, by = 1, cont = g)
  11: eval(ei, envir)
  12: eval(ei, envir)
  13: withVisible(eval(ei, envir))
  14: source(i)
  15: FUN(X[[i]], ...)
  16: lapply(X = X, FUN = FUN, ...)
  17: sapply(f, function(i) {    message("testing ", i)    source(i)})
  An irrecoverable exception occurred. R is aborting now ...
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   1.5Mb
    libs   3.8Mb
installed size is 11.9Mb
  sub-directories of 1Mb or more:
    libs  10.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘growth.Rmd’ using rmarkdown
Loading required package: OpenMx
OpenMx may run faster if it is compiled to take advantage of multiple cores.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'growth.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘growth.Rmd’

SUMMARY: processing the following file failed:
  ‘growth.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hackeRnews-specs.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hackeRnews-specs.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hackeRnews-specs.Rmd’

SUMMARY: processing the following file failed:
  ‘hackeRnews-specs.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘overview.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Warning: Removed 14 rows containing missing values (geom_segment).
Warning: Removed 1 rows containing missing values (geom_segment).
Warning: Removed 14 rows containing missing values (geom_segment).
Warning: Removed 1 rows containing missing values (geom_segment).
Warning: Removed 13 rows containing missing values (geom_segment).
Warning: Removed 14 rows containing missing values (geom_segment).
Warning: Removed 30 rows containing missing values (geom_segment).
Warning: Removed 1 rows containing missing values (geom_segment).
Warning: Removed 1 rows containing missing values (geom_segment).
Warning: Removed 14 rows containing missing values (geom_segment).
Warning: Removed 1 rows containing missing values (geom_segment).
Warning: Removed 14 rows containing missing values (geom_segment).
Warning: Removed 1 rows containing missing values (geom_segment).
Warning: Removed 14 rows containing missing values (geom_segment).
Warning: Removed 13 rows containing missing values (geom_segment).
Warning: Removed 30 rows containing missing values (geom_segment).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'overview.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘overview.Rmd’

SUMMARY: processing the following file failed:
  ‘overview.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hagis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hagis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hagis.Rmd’

SUMMARY: processing the following file failed:
  ‘hagis.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro_hal9001.Rmd’ using rmarkdown
Error in x$.self$finalize() : attempt to apply non-function
Error in x$.self$finalize() : attempt to apply non-function
Error in x$.self$finalize() : attempt to apply non-function
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro_hal9001.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro_hal9001.Rmd’

SUMMARY: processing the following file failed:
  ‘intro_hal9001.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Hapi.Rmd’ using rmarkdown
35 hetSNPs with potential genotyping errors are filtered out !
Number of hetSNPs in the framework: 21074
Number of hetSNPs after imputation: 20994
No region is required for proofreading !
Good consistence between draft haplotype andgmt1: 1

Good consistence between draft haplotype andgmt2: 1

Good consistence between draft haplotype andgmt3: 1

Good consistence between draft haplotype andgmt4: 1

Good consistence between draft haplotype andgmt5: 1

Number of reference pollens: 5

Number of reference pollens: 5

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Hapi.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Hapi.Rmd’

SUMMARY: processing the following file failed:
  ‘Hapi.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘haplor-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'haplor-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘haplor-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘haplor-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘happybirthday.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'happybirthday.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘happybirthday.Rmd’

SUMMARY: processing the following file failed:
  ‘happybirthday.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘ggtree’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Basic_use.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Basic_use.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Basic_use.Rmd’

SUMMARY: processing the following file failed:
  ‘Basic_use.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘datetimes.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'datetimes.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘datetimes.Rmd’

--- re-building ‘semantics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'semantics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘semantics.Rmd’

SUMMARY: processing the following files failed:
  ‘datetimes.Rmd’ ‘semantics.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hchinamap.Rmd’ using rmarkdown
trying URL 'https://czxb.github.io/br/chinadf.rda'
Content type 'application/octet-stream' length 3992 bytes
==================================================
downloaded 3992 bytes

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hchinamap.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hchinamap.Rmd’

SUMMARY: processing the following file failed:
  ‘hchinamap.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hdd_walkthrough.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hdd_walkthrough.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hdd_walkthrough.Rmd’

SUMMARY: processing the following file failed:
  ‘hdd_walkthrough.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 21.1Mb
  sub-directories of 1Mb or more:
    CWrappers_1.10.2   2.6Mb
    CWrappers_1.10.3   2.6Mb
    CWrappers_1.12.0   2.9Mb
    libs              10.4Mb
Error(s) in re-building vignettes:
--- re-building ‘hdme.Rmd’ using rmarkdown
Loading required package: Matrix
Loaded glmnet 3.0-2


Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'tidyr'

The following objects are masked from 'package:Matrix':

    expand, pack, unpack

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hdme.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hdme.Rmd’

SUMMARY: processing the following file failed:
  ‘hdme.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hdnom.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hdnom.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hdnom.Rmd’

SUMMARY: processing the following file failed:
  ‘hdnom.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 12.8Mb
  sub-directories of 1Mb or more:
    libs  12.3Mb
Error(s) in re-building vignettes:
--- re-building ‘heatmaply.Rmd’ using rmarkdown
Loading required package: plotly
Loading required package: ggplot2

Attaching package: 'plotly'

The following object is masked from 'package:ggplot2':

    last_plot

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:graphics':

    layout

Loading required package: viridis
Loading required package: viridisLite

======================
Welcome to heatmaply version 1.1.0

Type citation('heatmaply') for how to cite the package.
Type ?heatmaply for the main documentation.

The github page is: https://github.com/talgalili/heatmaply/
Please submit your suggestions and bug-reports at: https://github.com/talgalili/heatmaply/issues
Or contact: <tal.galili@gmail.com>
======================

Fontconfig error: Cannot load default config file
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'heatmaply.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘heatmaply.Rmd’

SUMMARY: processing the following file failed:
  ‘heatmaply.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘hedgehog.Rmd’ using rmarkdown
Loading required package: testthat
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hedgehog.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hedgehog.Rmd’

--- re-building ‘state-machines.Rmd’ using rmarkdown
Loading required package: testthat
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'state-machines.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘state-machines.Rmd’

SUMMARY: processing the following files failed:
  ‘hedgehog.Rmd’ ‘state-machines.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘rgho’
Error(s) in re-building vignettes:
  ...
--- re-building ‘helminthR_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'helminthR_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘helminthR_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘helminthR_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 20.8Mb
  sub-directories of 1Mb or more:
    doc    4.6Mb
    libs  15.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘hetGP_vignette.Rnw’ using knitr

Execution halted
Error(s) in re-building vignettes:
--- re-building ‘detect_idiosyncratic_vignette.Rmd’ using rmarkdown
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.0 ──
✔ ggplot2 3.3.0     ✔ purrr   0.3.3
✔ tibble  2.1.3     ✔ dplyr   0.8.5
✔ tidyr   1.0.2     ✔ stringr 1.4.0
✔ readr   1.3.1     ✔ forcats 0.5.0
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag()    masks stats::lag()
[WARNING] Could not parse YAML metadata at line 30 column 1: not an object
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'detect_idiosyncratic_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘detect_idiosyncratic_vignette.Rmd’

--- re-building ‘estimate_systematic_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'estimate_systematic_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘estimate_systematic_vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘detect_idiosyncratic_vignette.Rmd’
  ‘estimate_systematic_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking: 'marray', 'affy'
Error(s) in re-building vignettes:
  ...
--- re-building ‘HierDpart.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'HierDpart.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘HierDpart.Rmd’

SUMMARY: processing the following file failed:
  ‘HierDpart.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘hierfstat.Rmd’ using rmarkdown
Loading required package: ade4

   /// adegenet 2.1.2 is loaded ////////////

   > overview: '?adegenet'
   > tutorials/doc/questions: 'adegenetWeb()' 
   > bug reports/feature requests: adegenetIssues()



Attaching package: 'hierfstat'

The following object is masked from 'package:adegenet':

    read.fstat

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hierfstat.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hierfstat.Rmd’

SUMMARY: processing the following file failed:
  ‘hierfstat.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/HierO.Rcheck/00install.out’ for details.
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
    libs   1.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘data_handing.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'data_handing.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘data_handing.Rmd’

SUMMARY: processing the following file failed:
  ‘data_handing.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.8Mb
  sub-directories of 1Mb or more:
    highlight   1.0Mb
    libs        7.5Mb
Packages required but not available: 'InterpretMSSpectrum', 'Rdisop'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    data   1.0Mb
    libs   5.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette.Rmd’

--- re-building ‘vignette2.Rnw’ using knitr
--- finished re-building ‘vignette2.Rnw’

SUMMARY: processing the following file failed:
  ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hJAM_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hJAM_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hJAM_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘hJAM_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    data   3.5Mb
    libs   3.7Mb
Package required but not available: ‘bamsignals’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ropls’
Error(s) in re-building vignettes:
  ...
--- re-building ‘simulating-data.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 25-31 (simulating-data.Rmd) 
Error: processing vignette 'simulating-data.Rmd' failed with diagnostics:
there is no package called 'ropls'
--- failed re-building ‘simulating-data.Rmd’

SUMMARY: processing the following file failed:
  ‘simulating-data.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 11.2Mb
  sub-directories of 1Mb or more:
    libs  10.5Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘hpackedbubble.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hpackedbubble.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hpackedbubble.Rmd’

SUMMARY: processing the following file failed:
  ‘hpackedbubble.Rmd’

Error: Vignette re-building failed.
Execution halted
File ‘hpa/libs/hpa.so’:
  Found ‘_printf’, possibly from ‘printf’ (C)
    Objects: ‘hpaBinary.o’, ‘hpaML.o’, ‘hpaSelection.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘why_hrbrthemes.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'why_hrbrthemes.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘why_hrbrthemes.Rmd’

SUMMARY: processing the following file failed:
  ‘why_hrbrthemes.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hrcomprisk.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hrcomprisk.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hrcomprisk.Rmd’

SUMMARY: processing the following file failed:
  ‘hrcomprisk.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hR.Rmd’

SUMMARY: processing the following file failed:
  ‘hR.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 48.7Mb
  sub-directories of 1Mb or more:
    libs  48.2Mb
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    libs   3.5Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘htmltab.Rmd’ using rmarkdown
No encoding supplied: defaulting to UTF-8.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'htmltab.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘htmltab.Rmd’

SUMMARY: processing the following file failed:
  ‘htmltab.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘HTSFilter’
Error(s) in re-building vignettes:
--- re-building ‘httptest.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'httptest.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘httptest.Rmd’

--- re-building ‘redacting.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'redacting.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘redacting.Rmd’

--- re-building ‘vignettes.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignettes.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignettes.Rmd’

SUMMARY: processing the following files failed:
  ‘httptest.Rmd’ ‘redacting.Rmd’ ‘vignettes.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.9Mb
  sub-directories of 1Mb or more:
    libs   8.5Mb
installed size is  7.9Mb
  sub-directories of 1Mb or more:
    libs   7.8Mb
installed size is  7.7Mb
  sub-directories of 1Mb or more:
    dict   1.5Mb
    libs   5.1Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
trying URL 'https://arxiv.org/e-print/1406.4806v1'
Content type 'application/x-eprint-tar' length 29273 bytes (28 KB)
==================================================
downloaded 28 KB

Quitting from lines 161-165 (intro.Rmd) 
Error: processing vignette 'intro.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘intro.Rmd’

SUMMARY: processing the following file failed:
  ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hurdat.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hurdat.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hurdat.Rmd’

SUMMARY: processing the following file failed:
  ‘hurdat.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hurricaneexposure.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hurricaneexposure.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hurricaneexposure.Rmd’

SUMMARY: processing the following file failed:
  ‘hurricaneexposure.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hwordcloud.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hwordcloud.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hwordcloud.Rmd’

SUMMARY: processing the following file failed:
  ‘hwordcloud.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘hydroGOF_Vignette.Rmd’ using rmarkdown
Loading required package: zoo

Attaching package: 'zoo'

The following objects are masked from 'package:base':

    as.Date, as.Date.numeric

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hydroGOF_Vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hydroGOF_Vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘hydroGOF_Vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘hydroPSO_GR4J-vignette-link.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hydroPSO_GR4J-vignette-link.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hydroPSO_GR4J-vignette-link.Rmd’

--- re-building ‘hydroPSO_TUWmodel-vignette-link.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hydroPSO_TUWmodel-vignette-link.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hydroPSO_TUWmodel-vignette-link.Rmd’

SUMMARY: processing the following files failed:
  ‘hydroPSO_GR4J-vignette-link.Rmd’
  ‘hydroPSO_TUWmodel-vignette-link.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘intro_hydroscoper.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro_hydroscoper.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro_hydroscoper.Rmd’

--- re-building ‘stations_with_data.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'stations_with_data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘stations_with_data.Rmd’

SUMMARY: processing the following files failed:
  ‘intro_hydroscoper.Rmd’ ‘stations_with_data.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hydroTSM_Vignette-knitr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hydroTSM_Vignette-knitr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hydroTSM_Vignette-knitr.Rmd’

SUMMARY: processing the following file failed:
  ‘hydroTSM_Vignette-knitr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hyfo.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hyfo.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hyfo.Rmd’

SUMMARY: processing the following file failed:
  ‘hyfo.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Getting_started_with_the_R_package_hystReet.Rmd’ using rmarkdown

Attaching package: 'lubridate'

The following object is masked from 'package:base':

    date


Attaching package: 'dplyr'

The following objects are masked from 'package:lubridate':

    intersect, setdiff, union

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: httr
Loading required package: jsonlite
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Getting_started_with_the_R_package_hystReet.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Getting_started_with_the_R_package_hystReet.Rmd’

SUMMARY: processing the following file failed:
  ‘Getting_started_with_the_R_package_hystReet.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Implementation_example.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Implementation_example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Implementation_example.Rmd’

--- re-building ‘Simulation_example.Rmd’ using rmarkdown
Loading required package: shiny
Loading required package: shinydashboard

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box


Attaching package: 'iAdapt'

The following object is masked from 'package:shiny':

    runExample

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Simulation_example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Simulation_example.Rmd’

SUMMARY: processing the following files failed:
  ‘Implementation_example.Rmd’ ‘Simulation_example.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘falsering-proportion.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'falsering-proportion.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘falsering-proportion.Rmd’

SUMMARY: processing the following file failed:
  ‘falsering-proportion.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘IAPWS95.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'IAPWS95.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘IAPWS95.Rmd’

SUMMARY: processing the following file failed:
  ‘IAPWS95.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.1Mb
  sub-directories of 1Mb or more:
    data   3.0Mb
    libs   5.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘ibmsunburst.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ibmsunburst.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ibmsunburst.Rmd’

SUMMARY: processing the following file failed:
  ‘ibmsunburst.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'BSgenome.Hsapiens.1000genomes.hs37d5',
  'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Mmusculus.UCSC.mm10'
Packages unavailable to check Rd xrefs: ‘BSgenome.Hsapiens.UCSC.hg38’, ‘BSgenome.Hsapiens.1000genomes.hs37d5’, ‘BSgenome.Mmusculus.UCSC.mm10’
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    libs   5.7Mb
Package required but not available: ‘KEGGgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘icd10gm_intro.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'icd10gm_intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘icd10gm_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘icd10gm_intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'graphite', 'org.Hs.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
installed size is 16.8Mb
  sub-directories of 1Mb or more:
    libs  15.4Mb
Packages suggested but not available for checking: 'mixAK', 'runjags'
Error(s) in re-building vignettes:
  ...
--- re-building ‘iCiteR-usage.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'iCiteR-usage.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘iCiteR-usage.Rmd’

SUMMARY: processing the following file failed:
  ‘iCiteR-usage.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘icpsrdata-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'icpsrdata-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘icpsrdata-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘icpsrdata-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ideamdb.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ideamdb.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ideamdb.Rmd’

SUMMARY: processing the following file failed:
  ‘ideamdb.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 28.0Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs  26.5Mb
Packages suggested but not available for checking: 'ggtree', 'treeio'
Error(s) in re-building vignettes:
  ...
--- re-building ‘idmeasurer-workflow-examples.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'idmeasurer-workflow-examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘idmeasurer-workflow-examples.Rmd’

SUMMARY: processing the following file failed:
  ‘idmeasurer-workflow-examples.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘model_details.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'model_details.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘model_details.Rmd’

--- re-building ‘parameter_details.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'parameter_details.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘parameter_details.Rmd’

--- re-building ‘resources.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'resources.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘resources.Rmd’

SUMMARY: processing the following files failed:
  ‘model_details.Rmd’ ‘parameter_details.Rmd’ ‘resources.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ids.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ids.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ids.Rmd’

SUMMARY: processing the following file failed:
  ‘ids.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Open-Channel-Flow_Examples_Geometric_Shapes.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Open-Channel-Flow_Examples_Geometric_Shapes.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Open-Channel-Flow_Examples_Geometric_Shapes.Rmd’

SUMMARY: processing the following file failed:
  ‘Open-Channel-Flow_Examples_Geometric_Shapes.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘igate-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'igate-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘igate-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘igate-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 22.8Mb
  sub-directories of 1Mb or more:
    R      1.4Mb
    help   1.1Mb
    libs  19.8Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘iheatmapr-minimal.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'iheatmapr-minimal.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘iheatmapr-minimal.Rmd’

SUMMARY: processing the following file failed:
  ‘iheatmapr-minimal.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    libs   3.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘imagefluency.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'imagefluency.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘imagefluency.Rmd’

SUMMARY: processing the following file failed:
  ‘imagefluency.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 23.0Mb
  sub-directories of 1Mb or more:
    data      1.4Mb
    doc       1.1Mb
    extdata   1.0Mb
    include   3.0Mb
    libs     15.8Mb
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    libs   7.6Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘IMaGES.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'IMaGES.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘IMaGES.Rmd’

SUMMARY: processing the following file failed:
  ‘IMaGES.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘IMIFA.Rmd’ using rmarkdown

Package 'IMIFA' version 2.1.2.

Type '?IMIFA' to see a brief guide to how to use this R package.
Type 'citation("IMIFA")' for citing the package in publications.
Type 'IMIFA_news()' to see new features, changes, and bug fixes.

Fontconfig error: Cannot load default config file
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'IMIFA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘IMIFA.Rmd’

SUMMARY: processing the following file failed:
  ‘IMIFA.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘intro.Rmd’ using rmarkdown
randomForest 4.6-14
Type rfNews() to see new features/changes/bug fixes.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro.Rmd’

--- re-building ‘parallel.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'parallel.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘parallel.Rmd’

SUMMARY: processing the following files failed:
  ‘intro.Rmd’ ‘parallel.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  IM4ECpp.cpp:24:54: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  IM4ECpp.cpp:24:65: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  IM4ECpp.cpp:33:54: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  IM4ECpp.cpp:33:65: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  ImmigrateCpp.cpp:22:62: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  ImmigrateCpp.cpp:32:62: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  imIM4ECpp.cpp:24:59: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  imIM4ECpp.cpp:24:67: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  imIM4ECpp.cpp:24:78: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  imIM4ECpp.cpp:33:59: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  imIM4ECpp.cpp:33:67: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  imIM4ECpp.cpp:33:78: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/Immigrate.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
--- re-building ‘IAT-example.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'IAT-example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘IAT-example.Rmd’

--- re-building ‘SC-IAT-example.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'SC-IAT-example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘SC-IAT-example.Rmd’

--- re-building ‘implicitMeasures.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'implicitMeasures.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘implicitMeasures.Rmd’

SUMMARY: processing the following files failed:
  ‘IAT-example.Rmd’ ‘SC-IAT-example.Rmd’ ‘implicitMeasures.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘importinegi.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'importinegi.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘importinegi.Rmd’

SUMMARY: processing the following file failed:
  ‘importinegi.Rmd’

Error: Vignette re-building failed.
Execution halted
Package unavailable to check Rd xrefs: ‘ridge’
Error(s) in re-building vignettes:
  ...
--- re-building ‘IMT-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'IMT-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘IMT-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘IMT-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'siggenes', 'RankProd'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘incR_pipeline.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'incR_pipeline.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘incR_pipeline.Rmd’

SUMMARY: processing the following file failed:
  ‘incR_pipeline.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking: 'rsprng', 'Rmpi'
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction.Rmd’

Error: Vignette re-building failed.
In addition: Warning messages:
1: Removed 15 row(s) containing missing values (geom_path). 
2: Removed 15 row(s) containing missing values (geom_path). 
3: In theme_hc(bgcolor = "darkunica") :
  `bgcolor` is deprecated. Use `style` instead.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘inferference_intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'inferference_intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘inferference_intro.Rmd’

--- re-building ‘inferference_plots.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'inferference_plots.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘inferference_plots.Rmd’

SUMMARY: processing the following files failed:
  ‘inferference_intro.Rmd’ ‘inferference_plots.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘intro.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro.Rmd’

SUMMARY: processing the following file failed:
  ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Package unavailable to check Rd xrefs: ‘minfi’
Error(s) in re-building vignettes:
  ...
--- re-building ‘Vignettes.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Vignettes.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Vignettes.Rmd’

SUMMARY: processing the following file failed:
  ‘Vignettes.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Information-vignette.Rmd’ using rmarkdown_notangle
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Information-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Information-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘Information-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘InformationValue.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'InformationValue.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘InformationValue.Rmd’

SUMMARY: processing the following file failed:
  ‘InformationValue.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘inpdfr-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'inpdfr-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘inpdfr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘inpdfr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘insect-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'insect-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘insect-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘insect-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘vignette.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 11.6Mb
  sub-directories of 1Mb or more:
    libs  11.4Mb
Packages suggested but not available for checking:
  'MLP', 'org.Hs.eg.db', 'a4Base'
Error(s) in re-building vignettes:
--- re-building ‘IntGraphTutorial.Rmd’ using rmarkdown
Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: DiagrammeR
Loading required package: DiagrammeRsvg
Loading required package: rsvg
Loading required package: gtools
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'IntGraphTutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘IntGraphTutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘IntGraphTutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘apeglm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘categorical.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'categorical.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘categorical.Rmd’

--- re-building ‘interactions.Rmd’ using rmarkdown
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
Loading required namespace: broom.mixed

Attaching package: 'huxtable'

The following object is masked from 'package:ggplot2':

    theme_grey

Loading required package: grid
Loading required package: Matrix
Loading required package: survival

Attaching package: 'survey'

The following object is masked from 'package:graphics':

    dotchart

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'interactions.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘interactions.Rmd’

SUMMARY: processing the following files failed:
  ‘categorical.Rmd’ ‘interactions.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘internet-archive.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'internet-archive.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘internet-archive.Rmd’

SUMMARY: processing the following file failed:
  ‘internet-archive.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘interplot-vignette.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: abind
Loading required package: arm
Loading required package: MASS
Loading required package: Matrix
Loading required package: lme4

arm (Version 1.10-1, built: 2018-4-12)

Working directory is /Volumes/Builds/packages/high-sierra-x86_64/results/4.0/interplot.Rcheck/vign_test/interplot/vignettes

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'interplot-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘interplot-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘interplot-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 27.1Mb
  sub-directories of 1Mb or more:
    libs  26.8Mb
Package required but not available: ‘Rdisop’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘intkriging-workflow.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intkriging-workflow.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intkriging-workflow.Rmd’

SUMMARY: processing the following file failed:
  ‘intkriging-workflow.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘intmed-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intmed-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intmed-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘intmed-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.3Mb
  sub-directories of 1Mb or more:
    libs   9.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘shinymp.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'shinymp.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘shinymp.Rmd’

SUMMARY: processing the following file failed:
  ‘shinymp.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘User_Guide.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'User_Guide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘User_Guide.Rmd’

SUMMARY: processing the following file failed:
  ‘User_Guide.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘common_ipf_problems.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'common_ipf_problems.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘common_ipf_problems.Rmd’

--- re-building ‘using_ipfr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using_ipfr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using_ipfr.Rmd’

SUMMARY: processing the following files failed:
  ‘common_ipf_problems.Rmd’ ‘using_ipfr.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.6Mb
  sub-directories of 1Mb or more:
    libs   7.3Mb
Error(s) in re-building vignettes:
--- re-building ‘kernel_matrix.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'kernel_matrix.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘kernel_matrix.Rmd’

--- re-building ‘tecator.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tecator.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tecator.Rmd’

--- re-building ‘iprior_paper.pdf.asis’ using asis
--- finished re-building ‘iprior_paper.pdf.asis’

SUMMARY: processing the following files failed:
  ‘kernel_matrix.Rmd’ ‘tecator.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘introduction_to_iptools.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction_to_iptools.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction_to_iptools.Rmd’

--- re-building ‘iptools_datasets.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'iptools_datasets.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘iptools_datasets.Rmd’

SUMMARY: processing the following files failed:
  ‘introduction_to_iptools.Rmd’ ‘iptools_datasets.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ipv-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ipv-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ipv-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘ipv-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespaces in Imports field not imported from:
  ‘coda’ ‘lattice’
  All declared Imports should be used.
Running examples in ‘IRATER-Ex.R’ failed
The error most likely occurred in:

> ### Name: clean.admb
> ### Title: delete IRATE (ADMB) run files
> ### Aliases: clean.admb clean.IRATE
> 
> ### ** Examples
> 
> example.setup <- IRATE.examples()
> new.setup <- new.setup.path <- example.setup[1] # select old IRATE setup to reparameterize
> print(new.setup) # print setup name to be run
[1] "HoenigNonMixing"
> old.setup.path <- system.file(paste0("IRATE.examples/",new.setup,".dat"), package = "IRATER")
> 
> system(paste("mkdir -p ",new.setup.path)) # create run folder for new setup
> system(paste("cp",old.setup.path, new.setup.path)) # copy old setup in new run folder
> setwd(new.setup.path)
> 
> run.IRATE(new.setup) # compile and run setup
sh: admb: command not found
Error in R2admb::compile_admb(setup.file, safe = safe, re = re, verbose = verbose,  : 
  base admb command failed: run setup_admb(), or check ADMB installation
Calls: run.IRATE -> <Anonymous>
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rectifiedI.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rectifiedI.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rectifiedI.Rmd’

SUMMARY: processing the following file failed:
  ‘rectifiedI.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  rf.c:492:17: warning: expression result unused [-Wunused-value]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/iRF.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
--- re-building ‘getting-started-with-irg.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
ndvi                    package:irg                    R Documentation

_R_a_w _N_D_V_I _T_i_m_e _S_e_r_i_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     A data.table containing NDVI samples for ten points over ten years
     (2002-2012).

_F_o_r_m_a_t:

     A data.table with 2530 rows and 5 variables:

        • id - individual identifier

        • yr - year of sample

        • DayOfYear - julian day/day of year of sample

        • NDVI - sampled value

        • SummaryQA - Summary quality assessment value

     SummaryQA details:

        • 0 - Good data, use with confidence

        • 1 - Marginal data, useful but look at detailed QA for more
          information

        • 2 - Pixel covered with snow/ice

        • 3 - Pixel is cloudy

_E_x_a_m_p_l_e_s:

     # Load data.table
     library(data.table)
     
     # Read example data
     ndvi <- fread(system.file("extdata", "ndvi.csv", package = "irg"))
     

Quitting from lines 99-153 (getting-started-with-irg.Rmd) 
Error: processing vignette 'getting-started-with-irg.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘getting-started-with-irg.Rmd’

SUMMARY: processing the following file failed:
  ‘getting-started-with-irg.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘pbdZMQ’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘Irreglong-vignette.Rmd’ using rmarkdown
Loading required package: lme4
Loading required package: Matrix

Attaching package: 'MEMSS'

The following objects are masked from 'package:datasets':

    CO2, Orange, Theoph

Loading required package: boot

Attaching package: 'boot'

The following object is masked from 'package:survival':

    aml

Loading required package: MASS
Loading required package: survC1
Loading required package: doBy

Attaching package: 'frailtypack'

The following object is masked from 'package:survival':

    cluster

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Irreglong-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Irreglong-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘Irreglong-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘irtoys-vignette.Rmd’ using rmarkdown
Loading required package: sm
Package 'sm', version 2.2-5.6: type help(sm) for summary information
Loading required package: ltm
Loading required package: MASS

Attaching package: 'MASS'

The following object is masked from 'package:sm':

    muscle

Loading required package: msm
Loading required package: polycor
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'irtoys-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘irtoys-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘irtoys-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/island.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘isni_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'isni_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘isni_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘isni_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.8Mb
  sub-directories of 1Mb or more:
    doc    1.1Mb
    libs   7.5Mb
Error(s) in re-building vignettes:
--- re-building ‘isoband1.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'isoband1.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘isoband1.Rmd’

--- re-building ‘isoband2.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'isoband2.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘isoband2.Rmd’

--- re-building ‘isoband3.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'isoband3.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘isoband3.Rmd’

SUMMARY: processing the following files failed:
  ‘isoband1.Rmd’ ‘isoband2.Rmd’ ‘isoband3.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘acf.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'acf.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘acf.Rmd’

--- re-building ‘inspect.Rmd’ using rmarkdown
Quitting from lines 101-106 (inspect.Rmd) 
Error: processing vignette 'inspect.Rmd' failed with diagnostics:
non-conformable arrays
--- failed re-building ‘inspect.Rmd’

--- re-building ‘test.Rmd’ using rmarkdown
Quitting from lines 187-200 (test.Rmd) 
Error: processing vignette 'test.Rmd' failed with diagnostics:
non-conformable arrays
--- failed re-building ‘test.Rmd’

SUMMARY: processing the following files failed:
  ‘acf.Rmd’ ‘inspect.Rmd’ ‘test.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 17.6Mb
  sub-directories of 1Mb or more:
    art_profiles   1.5Mb
    libs          15.3Mb
Package required but not available: ‘lfa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘testthat.R’ [6s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  bbox:           xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965
  CRS:            4267
  ── 3. Failure: show_missing_levels parameter works (@test-tabyl.R#216)  ────────
  z %>% tabyl(a, b, new, show_missing_levels = TRUE) not equal to list(...).
  Component "lvl1": Attributes: < Component "core": Component "a": 'current' is not a factor >
  Component "lvl1": Component "a": 'current' is not a factor
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 554 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
  1. Failure: totals col is correct (@test-add-totals.R#33) 
  2. Failure: values are converted to NAs at the data.frame level (@test-clean-NAs.R#31) 
  3. Failure: show_missing_levels parameter works (@test-tabyl.R#216) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘janitor.Rmd’ using rmarkdown

Attaching package: 'janitor'

The following objects are masked from 'package:stats':

    chisq.test, fisher.test

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'janitor.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘janitor.Rmd’

--- re-building ‘tabyls.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tabyls.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tabyls.Rmd’

SUMMARY: processing the following files failed:
  ‘janitor.Rmd’ ‘tabyls.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘jaod.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'jaod.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘jaod.Rmd’

SUMMARY: processing the following file failed:
  ‘jaod.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  'config' variable 'CPP' is deprecated
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/JavaGD.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘using_the_jcolors_package.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using_the_jcolors_package.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using_the_jcolors_package.Rmd’

SUMMARY: processing the following file failed:
  ‘using_the_jcolors_package.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.6Mb
  sub-directories of 1Mb or more:
    libs   7.5Mb
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    libs   5.3Mb
installed size is  6.9Mb
  sub-directories of 1Mb or more:
    data   1.1Mb
    libs   5.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘new-syntax.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'new-syntax.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘new-syntax.Rmd’

SUMMARY: processing the following file failed:
  ‘new-syntax.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘JoF_Vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'JoF_Vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘JoF_Vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘JoF_Vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘joineRmeta.Rmd’ using rmarkdown
Loading 'meta' package (version 4.11-0).
Type 'help(meta)' for a brief overview.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'joineRmeta.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘joineRmeta.Rmd’

SUMMARY: processing the following file failed:
  ‘joineRmeta.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    data   1.3Mb
    libs   3.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘joineRML.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'joineRML.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘joineRML.Rmd’

--- re-building ‘technical.Rnw’ using Sweave
--- finished re-building ‘technical.Rnw’

SUMMARY: processing the following file failed:
  ‘joineRML.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘competing-risks.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'competing-risks.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘competing-risks.Rmd’

--- re-building ‘joineR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'joineR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘joineR.Rmd’

SUMMARY: processing the following files failed:
  ‘competing-risks.Rmd’ ‘joineR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘article.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'article.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘article.Rmd’

--- re-building ‘joinet.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'joinet.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘joinet.Rmd’

SUMMARY: processing the following files failed:
  ‘article.Rmd’ ‘joinet.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘PSCBS’
Package unavailable to check Rd xrefs: ‘PSCBS’
Error(s) in re-building vignettes:
  ...
--- re-building ‘Functionality.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Functionality.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Functionality.Rmd’

SUMMARY: processing the following file failed:
  ‘Functionality.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  jomo1clmmC.c:105:3: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  jomo1clmmhrC.c:107:3: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  jomo2clmmC.c:128:3: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  jomo2clmmhrC.c:132:3: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  jomooprobitC.c:84:3: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/jomo.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘usage.Rmd’ using rmarkdown
Linking to GEOS 3.7.2, GDAL 2.4.2, PROJ 5.2.0
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'usage.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘usage.Rmd’

SUMMARY: processing the following file failed:
  ‘usage.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘boral’
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    doc    1.5Mb
    libs   4.1Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘jskm.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'jskm.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘jskm.Rmd’

SUMMARY: processing the following file failed:
  ‘jskm.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘jsmediation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'jsmediation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘jsmediation.Rmd’

SUMMARY: processing the following file failed:
  ‘jsmediation.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘jsmodule.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'jsmodule.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘jsmodule.Rmd’

SUMMARY: processing the following file failed:
  ‘jsmodule.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 16.4Mb
  sub-directories of 1Mb or more:
    libs  15.9Mb
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc    1.2Mb
    libs   3.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘quickstart.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'quickstart.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘quickstart.Rmd’

SUMMARY: processing the following file failed:
  ‘quickstart.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘jstable.Rmd’ using rmarkdown
Loading required package: Matrix
boundary (singular) fit: see ?isSingular
Computing profile confidence intervals ...
boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
Loading required package: bdsmatrix

Attaching package: 'bdsmatrix'

The following object is masked from 'package:base':

    backsolve

Loading required package: grid

Attaching package: 'survey'

The following object is masked from 'package:graphics':

    dotchart


Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'jstable.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘jstable.Rmd’

SUMMARY: processing the following file failed:
  ‘jstable.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘jumptest.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'jumptest.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘jumptest.Rmd’

SUMMARY: processing the following file failed:
  ‘jumptest.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘diagnostics-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'diagnostics-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘diagnostics-vignette.Rmd’

--- re-building ‘exploratory-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'exploratory-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘exploratory-vignette.Rmd’

--- re-building ‘model-test-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'model-test-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘model-test-vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘diagnostics-vignette.Rmd’ ‘exploratory-vignette.Rmd’
  ‘model-test-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘testing.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'testing.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘testing.Rmd’

SUMMARY: processing the following file failed:
  ‘testing.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘kayadata.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'kayadata.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘kayadata.Rmd’

--- re-building ‘policy_analysis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'policy_analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘policy_analysis.Rmd’

SUMMARY: processing the following files failed:
  ‘kayadata.Rmd’ ‘policy_analysis.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘pbdMPI’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
installed size is 16.2Mb
  sub-directories of 1Mb or more:
    libs  16.0Mb
installed size is 19.2Mb
  sub-directories of 1Mb or more:
    doc    1.3Mb
    libs  17.5Mb
Error(s) in re-building vignettes:
--- re-building ‘behaviour.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Warning: Removed 1 row(s) containing missing values (geom_path).
Warning: Removed 1 row(s) containing missing values (geom_path).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'behaviour.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘behaviour.Rmd’

--- re-building ‘kendall_rws.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'kendall_rws.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘kendall_rws.Rmd’

SUMMARY: processing the following files failed:
  ‘behaviour.Rmd’ ‘kendall_rws.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 11.1Mb
  sub-directories of 1Mb or more:
    libs  10.8Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘kernelTDA-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'kernelTDA-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘kernelTDA-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘kernelTDA-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘kgc-fine.Rmd’ using rmarkdown
Loading required package: shiny
Loading required package: shinythemes
Loading required package: plyr
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'kgc-fine.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘kgc-fine.Rmd’

--- re-building ‘kgc-vignette.Rmd’ using rmarkdown
Loading required package: shiny
Loading required package: shinythemes
Loading required package: plyr
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'kgc-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘kgc-vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘kgc-fine.Rmd’ ‘kgc-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘klic-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'klic-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘klic-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘klic-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/kmcudaR.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘kmed.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'kmed.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘kmed.Rmd’

SUMMARY: processing the following file failed:
  ‘kmed.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction_to_kmeRs_package.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction_to_kmeRs_package.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction_to_kmeRs_package.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_kmeRs_package.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘tutorial.Rmd’ using rmarkdown
Warning in get_engine(options$engine) :
  Unknown language engine 'eval' (must be registered via knit_engines$set()).
Writing 5 Bibtex entries ... OK
Results written to file 'references.bib'
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘lTab.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lTab.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lTab.Rmd’

--- re-building ‘sTab.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sTab.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sTab.Rmd’

--- re-building ‘xTab.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'xTab.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘xTab.Rmd’

SUMMARY: processing the following files failed:
  ‘lTab.Rmd’ ‘sTab.Rmd’ ‘xTab.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction-to-konfound.Rmd’ using rmarkdown
Loading required namespace: forcats
Note that for a non-linear model, impact threshold should not be interpreted.
Note that this is only an approximation. For exact results in terms of the number of cases that must be switched from treatment success to treatment failure to invalidate the inference see: https://msu.edu/~kenfrank/non%20linear%20replacement%20treatment.xlsm
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction-to-konfound.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction-to-konfound.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction-to-konfound.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘kraljic.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'kraljic.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘kraljic.Rmd’

SUMMARY: processing the following file failed:
  ‘kraljic.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘runUnitTests.R’ [1s/2s]
Running the tests in ‘tests/runUnitTests.R’ failed.
Last 13 lines of output:
  test.keysPool: (2 checks) ... OK (0.02 seconds)
  test.long2wide: (3 checks) ... OK (0.07 seconds)
  test.safeInteger: (2 checks) ... OK (0 seconds)
  test.wide2long: (2 checks) ... OK (0.08 seconds)
  > 
  > tmp <- getErrors(testResult)
  > if (tmp$nFail > 0 | tmp$nErr > 0) {
  +   stop(paste0("\n\nUnit testing failed (", tmp$nFail, " test failures), ",
  +               tmp$nErr, " R errors)\n\n"))
  + }
  Error: 
  
  Unit testing failed (1 test failures), 0 R errors)
  
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘shiny-app.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'shiny-app.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘shiny-app.Rmd’

--- re-building ‘tutorial.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following files failed:
  ‘shiny-app.Rmd’ ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.8Mb
  sub-directories of 1Mb or more:
    doc    2.4Mb
    libs   8.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘L0Learn-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'L0Learn-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘L0Learn-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘L0Learn-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro_labelled.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro_labelled.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro_labelled.Rmd’

SUMMARY: processing the following file failed:
  ‘intro_labelled.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.4Mb
  sub-directories of 1Mb or more:
    data   8.2Mb
Package unavailable to check Rd xrefs: ‘R2jags’
Found the following significant warnings:
  W_gamma_Cpp.cpp:14:39: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/LambertW.Rcheck/00install.out’ for details.
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    libs   3.2Mb
Error(s) in re-building vignettes:
--- re-building ‘getstarted.Rmd’ using rmarkdown
Loading required package: sp

Attaching package: 'dplyr'

The following objects are masked from 'package:raster':

    intersect, select, union

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'getstarted.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘getstarted.Rmd’

SUMMARY: processing the following file failed:
  ‘getstarted.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘overview.Rmd’ using rmarkdown
Loading required package: raster
Loading required package: sp
Warning: Removed 598 rows containing missing values (geom_raster).
Warning: Removed 598 rows containing missing values (geom_raster).
Warning: Removed 897 rows containing missing values (geom_raster).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'overview.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘overview.Rmd’

SUMMARY: processing the following file failed:
  ‘overview.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 138.7Mb
  sub-directories of 1Mb or more:
    libs  137.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘Intro_to_lavaanPlot.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Intro_to_lavaanPlot.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Intro_to_lavaanPlot.Rmd’

SUMMARY: processing the following file failed:
  ‘Intro_to_lavaanPlot.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘texmex’
Package unavailable to check Rd xrefs: ‘texmex’
Error(s) in re-building vignettes:
--- re-building ‘lax-vignette.Rmd’ using rmarkdown

Attaching package: 'extRemes'

The following objects are masked from 'package:stats':

    qqnorm, qqplot

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lax-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lax-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘lax-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘lazy_example.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lazy_example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lazy_example.Rmd’

SUMMARY: processing the following file failed:
  ‘lazy_example.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘LBSPR.Rmd’ using rmarkdown
Fitting model
Year:
1
2
3
4
5
6
Fitting model
Year:
1
2
3
4
5
6
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'LBSPR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘LBSPR.Rmd’

SUMMARY: processing the following file failed:
  ‘LBSPR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘lcars.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lcars.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lcars.Rmd’

SUMMARY: processing the following file failed:
  ‘lcars.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘lchemix-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lchemix-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lchemix-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘lchemix-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ldamatch-demos.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ldamatch-demos.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ldamatch-demos.Rmd’

SUMMARY: processing the following file failed:
  ‘ldamatch-demos.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  ./lda_svi.h:1:9: warning: '_lda_svi_guard' is used as a header guard here, followed by #define of a different macro [-Wheader-guard]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/lda.svi.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘topics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'topics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘topics.Rmd’

SUMMARY: processing the following file failed:
  ‘topics.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘LDlinkR_vignette_v8-2_TM.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'LDlinkR_vignette_v8-2_TM.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘LDlinkR_vignette_v8-2_TM.Rmd’

SUMMARY: processing the following file failed:
  ‘LDlinkR_vignette_v8-2_TM.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘leaflet-opacity.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'leaflet-opacity.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘leaflet-opacity.Rmd’

SUMMARY: processing the following file failed:
  ‘leaflet-opacity.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘getting_data_leanpub.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'getting_data_leanpub.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘getting_data_leanpub.Rmd’

SUMMARY: processing the following file failed:
  ‘getting_data_leanpub.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘CCM-data.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'CCM-data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘CCM-data.Rmd’

--- re-building ‘subnet-sim.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'subnet-sim.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘subnet-sim.Rmd’

SUMMARY: processing the following files failed:
  ‘CCM-data.Rmd’ ‘subnet-sim.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘shinyapps-publishing.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'shinyapps-publishing.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘shinyapps-publishing.Rmd’

SUMMARY: processing the following file failed:
  ‘shinyapps-publishing.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘ElasticNet.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ElasticNet.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ElasticNet.Rmd’

--- re-building ‘GxE_testing.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GxE_testing.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GxE_testing.Rmd’

--- re-building ‘LEGIT.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'LEGIT.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘LEGIT.Rmd’

SUMMARY: processing the following files failed:
  ‘ElasticNet.Rmd’ ‘GxE_testing.Rmd’ ‘LEGIT.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘demo.Rmd’ using rmarkdown
LexisNexisTools Version 0.3.0
Creating LNToutput from 1 file...
	...files loaded [0.0038 secs]
	...articles split [0.012 secs]
	...lengths extracted [0.017 secs]
	...newspapers extracted [0.02 secs]
	...dates extracted [0.022 secs]
	...authors extracted [0.023 secs]
	...sections extracted [0.024 secs]
	...editions extracted [0.024 secs]
	...headlines extracted [0.026 secs]
	...dates converted [0.037 secs]
	...metadata extracted [0.04 secs]
	...article texts extracted [0.10 secs]
	...paragraphs extracted [0.13 secs]
	...superfluous whitespace removed [0.13 secs]
Elapsed time: 0.13 secs
Checking similiarity for 10 articles over 4 dates...
	...quanteda dfm construced for similarity comparison [0.28 secs].

	...processing date 2010-01-08: 0 duplicates found [0.28 secs]. 		
	...processing date 2010-01-09: 0 duplicates found [0.28 secs]. 		
	...processing date 2010-01-10: 0 duplicates found [0.38 secs]. 		
	...processing date 2010-01-11: 5 duplicates found [8.33 secs]. 		
Threshold = 0.97; 4 days processed; 5 duplicates found; in 8.33 secs
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'demo.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘demo.Rmd’

SUMMARY: processing the following file failed:
  ‘demo.Rmd’

Error: Vignette re-building failed.
Execution halted
Errors in running code in vignettes:
when running code in ‘liayson.Rnw’
  ...
> data(epg)

> data(segments)

> X = aggregateSegmentExpression(epg, segments, mingps = 20, 
+     GRCh = 38)

  When sourcing ‘liayson.R’:
Error: Service Unavailable (HTTP 503).
Execution halted

  ‘liayson.Rnw’... failed
Found the following significant warnings:
  clang: warning: -lOPF: 'linker' input unused [-Wunused-command-line-argument]
  clang: warning: -lm: 'linker' input unused [-Wunused-command-line-argument]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/LibOPF.Rcheck/00install.out’ for details.
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    libs   6.3Mb
installed size is  9.7Mb
  sub-directories of 1Mb or more:
    extdata   1.1Mb
    libs      6.5Mb
Running ‘testthat.R’ [69s/98s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  
  * This installation of lidR has not been compiled with OpenMP support
  
  * This installation of lidR has not been compiled with OpenMP support
  
  * This installation of lidR has not been compiled with OpenMP support
  
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 970 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Failure: catalog_apply automerge works with in memory POINTS (@test-catalog_apply-automerge.R#171) 
  2. Failure: catalog_apply can bypass errors (@test-catalog_apply-generic.R#171) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘summary.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'summary.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘summary.Rmd’

--- re-building ‘vignette_viz.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette_viz.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette_viz.Rmd’

SUMMARY: processing the following files failed:
  ‘summary.Rmd’ ‘vignette_viz.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking: 'gWidgetsRGtk2', 'RGtk2'
Error(s) in re-building vignettes:
--- re-building ‘liftr-addins.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'liftr-addins.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘liftr-addins.Rmd’

--- re-building ‘liftr-intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'liftr-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘liftr-intro.Rmd’

--- re-building ‘liftr-tidyverse.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'liftr-tidyverse.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘liftr-tidyverse.Rmd’

SUMMARY: processing the following files failed:
  ‘liftr-addins.Rmd’ ‘liftr-intro.Rmd’ ‘liftr-tidyverse.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    doc    1.2Mb
    libs   1.2Mb
Error(s) in re-building vignettes:
--- re-building ‘batch_import.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'batch_import.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘batch_import.Rmd’

--- re-building ‘renormalise.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'renormalise.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘renormalise.Rmd’

--- re-building ‘true_example.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'true_example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘true_example.Rmd’

SUMMARY: processing the following files failed:
  ‘batch_import.Rmd’ ‘renormalise.Rmd’ ‘true_example.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Understanding_lime.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Understanding_lime.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Understanding_lime.Rmd’

SUMMARY: processing the following file failed:
  ‘Understanding_lime.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘linear.tools.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'linear.tools.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘linear.tools.Rmd’

SUMMARY: processing the following file failed:
  ‘linear.tools.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘lin_eval.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lin_eval.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lin_eval.Rmd’

SUMMARY: processing the following file failed:
  ‘lin_eval.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘proxfun.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'proxfun.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘proxfun.Rmd’

SUMMARY: processing the following file failed:
  ‘proxfun.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘linkspotterVignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'linkspotterVignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘linkspotterVignette.Rmd’

SUMMARY: processing the following file failed:
  ‘linkspotterVignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘linl.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'linl.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘linl.Rmd’

SUMMARY: processing the following file failed:
  ‘linl.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘creating_linters.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'creating_linters.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘creating_linters.Rmd’

SUMMARY: processing the following file failed:
  ‘creating_linters.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 11.9Mb
  sub-directories of 1Mb or more:
    doc    2.2Mb
    libs   9.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘combined-list.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'combined-list.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘combined-list.Rmd’

SUMMARY: processing the following file failed:
  ‘combined-list.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘wine_quality.Rmd’ using rmarkdown
Loading required package: ParamHelpers
'mlr' is in maintenance mode since July 2019. Future development
efforts will go into its successor 'mlr3' (<https://mlr3.mlr-org.com>).
Welcome to live v1.5.13. Live is a part of DALEXverse. Find out more at https://github.com/pbiecek/DALEX.

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'e1071'

The following object is masked from 'package:mlr':

    impute

Loading required package: RWeka
Warning: Ignoring unknown aesthetics: x
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'wine_quality.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘wine_quality.Rmd’

SUMMARY: processing the following file failed:
  ‘wine_quality.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 28.4Mb
  sub-directories of 1Mb or more:
    R          1.5Mb
    doc        2.4Mb
    libs      22.0Mb
    testdata   1.6Mb
Running ‘AAAtest-all.R’ [87s/130s]
Running the tests in ‘tests/AAAtest-all.R’ failed.
Last 13 lines of output:
  +     test_check(pkg)
  +     ##======== ^^^
  +     print(warnings()) # TODO? catch most of these by expect_warning(..)
  + } else {
  +     cat( "package 'testthat' not available, cannot run unit tests\n" )
  + }
  ── 1. Failure: missDataFun (@test-formulaEval.R#218)  ──────────────────────────
  t2[["elapsed"]] is not less than 1/4 * t1[["elapsed"]]. Difference: 0.0575
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 790 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Failure: missDataFun (@test-formulaEval.R#218) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘lmem.qtler.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lmem.qtler.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lmem.qtler.Rmd’

SUMMARY: processing the following file failed:
  ‘lmem.qtler.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘localsolver-Ex.R’ failed
The error most likely occurred in:

> ### Name: add.output.expr
> ### Title: Add expression to output of ls.problem.
> ### Aliases: add.output.expr
> 
> ### ** Examples
> 
> model.text.lsp <- lsp.model.example('extdata/knapsack.txt')
> lsp <- ls.problem(model.text.lsp)
sh: localsolver: command not found
Error in ls.problem(model.text.lsp) : 
  has.localsolver(ls.path) is not TRUE
Calls: ls.problem -> stopifnot
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘localsolver.Rmd’ using knitr
sh: localsolver: command not found
Quitting from lines 66-68 (localsolver.Rmd) 
Error: processing vignette 'localsolver.Rmd' failed with diagnostics:
has.localsolver(ls.path) is not TRUE
--- failed re-building ‘localsolver.Rmd’

SUMMARY: processing the following file failed:
  ‘localsolver.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘localfdr-intro-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'localfdr-intro-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘localfdr-intro-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘localfdr-intro-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 13.9Mb
  sub-directories of 1Mb or more:
    libs  13.8Mb
Error(s) in re-building vignettes:
--- re-building ‘quickstart.Rmd’ using rmarkdown
Loading loewesadditivity

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'kableExtra'

The following object is masked from 'package:dplyr':

    group_rows

Warning in as.numeric(group[1]) %in% rot.groups :
  NAs introduced by coercion
Warning in as.numeric(group[1]) %in% rot.groups :
  NAs introduced by coercion
Warning in as.numeric(group[1]) %in% rot.groups :
  NAs introduced by coercion
Warning in as.numeric(group[1]) %in% rot.groups :
  NAs introduced by coercion
Warning in as.numeric(group[1]) %in% rot.groups :
  NAs introduced by coercion
Warning in as.numeric(group[1]) %in% rot.groups :
  NAs introduced by coercion
Warning in as.numeric(group[1]) %in% rot.groups :
  NAs introduced by coercion
Warning in as.numeric(group[1]) %in% rot.groups :
  NAs introduced by coercion
Warning in as.numeric(group[1]) %in% rot.groups :
  NAs introduced by coercion
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'quickstart.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘quickstart.Rmd’

SUMMARY: processing the following file failed:
  ‘quickstart.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘logisticPCA.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'logisticPCA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘logisticPCA.Rmd’

SUMMARY: processing the following file failed:
  ‘logisticPCA.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘logisticRR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'logisticRR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘logisticRR.Rmd’

SUMMARY: processing the following file failed:
  ‘logisticRR.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 19.3Mb
  sub-directories of 1Mb or more:
    libs  17.7Mb
Error(s) in re-building vignettes:
--- re-building ‘lolog-ergm.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lolog-ergm.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lolog-ergm.Rmd’

--- re-building ‘lolog-introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lolog-introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lolog-introduction.Rmd’

SUMMARY: processing the following files failed:
  ‘lolog-ergm.Rmd’ ‘lolog-introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'RDRToolbox', 'ElemStatLearn'
Error(s) in re-building vignettes:
--- re-building ‘Looping.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Looping.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Looping.Rmd’

SUMMARY: processing the following file failed:
  ‘Looping.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Overview.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Overview.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Overview.Rmd’

SUMMARY: processing the following file failed:
  ‘Overview.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘lowWAFOMNX.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lowWAFOMNX.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lowWAFOMNX.Rmd’

SUMMARY: processing the following file failed:
  ‘lowWAFOMNX.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘lowWAFOMSobol.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lowWAFOMSobol.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lowWAFOMSobol.Rmd’

SUMMARY: processing the following file failed:
  ‘lowWAFOMSobol.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘lplyr-vignette.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'lplyr'

The following object is masked from 'package:dplyr':

    pull

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lplyr-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lplyr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘lplyr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘Rsymphony’
Package required but not available: ‘GeneticsPed’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘lsa-tests.R’ [1s/1s]
Running the tests in ‘tests/lsa-tests.R’ failed.
Last 13 lines of output:
  > write( c("system", "human", "system", "EPS"), file=paste(td,"/c4", sep=""))
  > write( c("user", "response", "time"), file=paste(td,"/c5", sep=""))
  > write( c("trees"), file=paste(td,"/m1", sep=""))
  > write( c("graph", "trees"), file=paste(td,"/m2", sep=""))
  > write( c("graph", "minors", "trees"), file=paste(td,"/m3", sep=""))
  > write( c("graph", "minors", "survey"), file=paste(td,"/m4", sep=""))
  > 
  > # -  -  -  -  -  -  -  -  -  -  -  -  -  -  
  > # test normal matrix
  > 
  > dtm = textmatrix(td)
  > lsatest( all( rownames(dtm) == c("computer", "human",  "interface", "response", "survey", "system", "time", "user", "eps", "trees", "graph", "minors")), "[textmatrix] - landauer, terms")
  Error in lsatest(all(rownames(dtm) == c("computer", "human", "interface",  : 
    [textmatrix] - landauer, terms
  Execution halted
installed size is 51.9Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs  49.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘lspline.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 18-23 (lspline.Rmd) 
Error: processing vignette 'lspline.Rmd' failed with diagnostics:
object 'params' not found
--- failed re-building ‘lspline.Rmd’

SUMMARY: processing the following file failed:
  ‘lspline.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘LTRCtrees.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'LTRCtrees.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘LTRCtrees.Rmd’

SUMMARY: processing the following file failed:
  ‘LTRCtrees.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘lubridate.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lubridate.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lubridate.Rmd’

SUMMARY: processing the following file failed:
  ‘lubridate.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘lucid_examples.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: lucid
Loading required package: lattice
Loading required package: rjags
Quitting from lines 242-266 (lucid_examples.Rmd) 
Error: processing vignette 'lucid_examples.Rmd' failed with diagnostics:
could not find function "jags.model"
--- failed re-building ‘lucid_examples.Rmd’

SUMMARY: processing the following file failed:
  ‘lucid_examples.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘LUCIDus-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'LUCIDus-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘LUCIDus-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘LUCIDus-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
    libs   3.7Mb
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    R      1.6Mb
    help   1.1Mb
    libs   1.9Mb
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    R   4.0Mb
installed size is 26.1Mb
  sub-directories of 1Mb or more:
    libs  26.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘tutorial.Rmd’ using rmarkdown
Warning: Use of `pipo$x` is discouraged. Use `x` instead.
Warning: Use of `pipo$y` is discouraged. Use `y` instead.
Warning: Use of `pipo$b` is discouraged. Use `b` instead.
Warning: Use of `pipo$id` is discouraged. Use `id` instead.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘mable.Rmd’ using rmarkdown
Warning in mable(Vaal.Flow$Flow, M = c(2, 100), interval = c(0, 3000), IC = "all",  :
  The maximum candidate degree has been reached 
 with a p-value of the change-point 0.000000.
Warning in mable.ph(cbind(futime1, futime2) ~ age, data = ovarian2, M = c(2,  :
  
The maximum candidate degree has been reached 
with a p-value of the change-point 0.008885.
Warning in mable.ph(formula, data, M, g, pi0, tau, x0, controls, progress) :
  
The maximum candidate degree has been reached 
with a p-value of the change-point 0.008885.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mable.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mable.Rmd’

SUMMARY: processing the following file failed:
  ‘mable.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘macleish.Rmd’ using rmarkdown
Loading required package: etl
Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'lubridate'

The following objects are masked from 'package:dplyr':

    intersect, setdiff, union

The following objects are masked from 'package:base':

    date, intersect, setdiff, union

Loading required package: mgcv
Loading required package: nlme

Attaching package: 'nlme'

The following object is masked from 'package:dplyr':

    collapse

This is mgcv 1.8-31. For overview type 'help("mgcv-package")'.
`geom_smooth()` using method = 'gam' and formula 'y ~ s(x, bs = "cs")'
Loading required package: clifro
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'macleish.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘macleish.Rmd’

SUMMARY: processing the following file failed:
  ‘macleish.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MADPop-quicktut.Rmd’ using rmarkdown
[WARNING] Could not parse YAML metadata at line 38 column 1: Unexpected '
  '
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MADPop-quicktut.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MADPop-quicktut.Rmd’

SUMMARY: processing the following file failed:
  ‘MADPop-quicktut.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘madrat.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'madrat.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘madrat.Rmd’

SUMMARY: processing the following file failed:
  ‘madrat.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 84.9Mb
  sub-directories of 1Mb or more:
    doc    6.7Mb
    libs  77.6Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘using_mag.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using_mag.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using_mag.Rmd’

SUMMARY: processing the following file failed:
  ‘using_mag.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 21.0Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    libs  19.2Mb
Error(s) in re-building vignettes:
--- re-building ‘MALDIrppa_vignette.Rmd’ using rmarkdown
Loading required package: MALDIquant

This is MALDIquant version 1.19.3
Quantitative Analysis of Mass Spectrometry Data
 See '?MALDIquant' for more information about this package.

Loading required package: signal

Attaching package: 'signal'

The following objects are masked from 'package:stats':

    filter, poly

Loading required package: robustbase
Loading required package: wmtsa
Loading required package: lattice
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MALDIrppa_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MALDIrppa_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘MALDIrppa_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘manhattanly.Rmd’ using rmarkdown
Loading required package: ggplot2

Attaching package: 'plotly'

The following object is masked from 'package:ggplot2':

    last_plot

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:graphics':

    layout

Fontconfig error: Cannot load default config file
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'manhattanly.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘manhattanly.Rmd’

SUMMARY: processing the following file failed:
  ‘manhattanly.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘manipulateWidgets.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'manipulateWidgets.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘manipulateWidgets.Rmd’

SUMMARY: processing the following file failed:
  ‘manipulateWidgets.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction_to_MANOVA.RM.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction_to_MANOVA.RM.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction_to_MANOVA.RM.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_MANOVA.RM.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘a-gentle-introduction-to-manymodelr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'a-gentle-introduction-to-manymodelr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘a-gentle-introduction-to-manymodelr.Rmd’

SUMMARY: processing the following file failed:
  ‘a-gentle-introduction-to-manymodelr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘choropleth_maps_vignette.Rmd’ using rmarkdown
Warning: Column `pr_english`/`province` joining character vector and factor, coercing into character vector
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'choropleth_maps_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘choropleth_maps_vignette.Rmd’

--- re-building ‘riding_binplot_vignette.Rmd’ using rmarkdown
Warning: Removed 1 rows containing missing values (geom_tile).
Warning: Removed 1 rows containing missing values (geom_tile).
Warning: Removed 1 rows containing missing values (geom_tile).
Warning: Removed 1 rows containing missing values (geom_tile).
Warning: Removed 1 rows containing missing values (geom_tile).
Warning: Removed 1 rows containing missing values (geom_tile).
Warning: Removed 1 rows containing missing values (geom_tile).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'riding_binplot_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘riding_binplot_vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘choropleth_maps_vignette.Rmd’ ‘riding_binplot_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 19.5Mb
  sub-directories of 1Mb or more:
    data          1.3Mb
    doc           1.2Mb
    htmlwidgets   1.9Mb
    libs         14.8Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘mapdeck.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mapdeck.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mapdeck.Rmd’

SUMMARY: processing the following file failed:
  ‘mapdeck.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mapmisc.Rnw’ using knitr
Loading required package: sp
Loading required package: raster
map images will be cached in  /var/folders/08/nc4f1s3x1jqd9ln5mnvrqzqh0000gp/T//RtmppRkH7X/mapmiscCache
--- finished re-building ‘mapmisc.Rnw’

--- re-building ‘north.Rmd’ using docco_linear
Quitting from lines 221-238 (north.Rmd) 
Error: processing vignette 'north.Rmd' failed with diagnostics:
unable to find an inherited method for function 'coordinates' for signature '"numeric"'
--- failed re-building ‘north.Rmd’

pandoc --self-contained --to=html5 --css=http://diseasemapping.r-forge.r-project.org/webpage.css --output=north.html north.md	
make: pandoc: No such file or directory
make: *** [north.html] Error 1
Error in tools:::buildVignettes(dir = "/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/mapmisc.Rcheck/vign_test/mapmisc",  : 
  running 'make' failed
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 95-100 (intro.Rmd) 
Error: processing vignette 'intro.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘intro.Rmd’

SUMMARY: processing the following file failed:
  ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘marcher.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'marcher.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘marcher.Rmd’

SUMMARY: processing the following file failed:
  ‘marcher.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MarginalMediation_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MarginalMediation_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MarginalMediation_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘MarginalMediation_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘MarketMatching-Vignette.Rmd’ using rmarkdown_notangle
Loading required package: proxy

Attaching package: 'proxy'

The following objects are masked from 'package:stats':

    as.dist, dist

The following object is masked from 'package:base':

    as.matrix

Loaded dtw v1.21-3. See ?dtw for help, citation("dtw") for use in publication.

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MarketMatching-Vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MarketMatching-Vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘MarketMatching-Vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction_to_marketer.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction_to_marketer.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction_to_marketer.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction_to_marketer.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘markmyassignment-teacher.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'markmyassignment-teacher.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘markmyassignment-teacher.Rmd’

--- re-building ‘markmyassignment.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'markmyassignment.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘markmyassignment.Rmd’

SUMMARY: processing the following files failed:
  ‘markmyassignment-teacher.Rmd’ ‘markmyassignment.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘estimaterates.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'estimaterates.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘estimaterates.Rmd’

SUMMARY: processing the following file failed:
  ‘estimaterates.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.0Mb
  sub-directories of 1Mb or more:
    libs   8.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘mason.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mason.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mason.Rmd’

SUMMARY: processing the following file failed:
  ‘mason.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘matahari.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'matahari.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘matahari.Rmd’

SUMMARY: processing the following file failed:
  ‘matahari.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 13.3Mb
  sub-directories of 1Mb or more:
    java   3.3Mb
    libs   8.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘investigateMatingScene.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'investigateMatingScene.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘investigateMatingScene.Rmd’

SUMMARY: processing the following file failed:
  ‘investigateMatingScene.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘policy_evaluation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'policy_evaluation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘policy_evaluation.Rmd’

SUMMARY: processing the following file failed:
  ‘policy_evaluation.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘ASGSCA’
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    libs   7.0Mb
Error(s) in re-building vignettes:
--- re-building ‘applybyname-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'applybyname-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘applybyname-vignette.Rmd’

--- re-building ‘matsbyname.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'matsbyname.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘matsbyname.Rmd’

SUMMARY: processing the following files failed:
  ‘applybyname-vignette.Rmd’ ‘matsbyname.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘matsindf.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'matsindf.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘matsindf.Rmd’

--- re-building ‘midf_apply_primer.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'midf_apply_primer.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘midf_apply_primer.Rmd’

SUMMARY: processing the following files failed:
  ‘matsindf.Rmd’ ‘midf_apply_primer.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Running_MAUT.Rmd’ using rmarkdown

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Running_MAUT.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Running_MAUT.Rmd’

SUMMARY: processing the following file failed:
  ‘Running_MAUT.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MaxentVariableSelection.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MaxentVariableSelection.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MaxentVariableSelection.Rmd’

SUMMARY: processing the following file failed:
  ‘MaxentVariableSelection.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MazamaLocationUtils.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MazamaLocationUtils.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MazamaLocationUtils.Rmd’

SUMMARY: processing the following file failed:
  ‘MazamaLocationUtils.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MazamaSpatialUtils.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MazamaSpatialUtils.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MazamaSpatialUtils.Rmd’

SUMMARY: processing the following file failed:
  ‘MazamaSpatialUtils.Rmd’

Error: Vignette re-building failed.
Execution halted
Package unavailable to check Rd xrefs: ‘gemtc’
Package suggested but not available for checking: ‘kangar00’
Package unavailable to check Rd xrefs: ‘kangar00’
Error(s) in re-building vignettes:
  ...
--- re-building ‘mboxr_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mboxr_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mboxr_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘mboxr_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 13.1Mb
  sub-directories of 1Mb or more:
    doc    3.8Mb
    libs   9.0Mb
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    doc   3.0Mb
Error(s) in re-building vignettes:
--- re-building ‘mcmcabn.Rmd’ using rmarkdown
Loading required package: nnet
Loading required package: MASS
Loading required package: lme4
Loading required package: Matrix
Loading required package: magrittr

Attaching package: 'magrittr'

The following object is masked from 'package:abn':

    or


********************************************************
Note: As of version 1.0.0, cowplot does not change the
  default ggplot2 theme anymore. To recover the previous
  behavior, execute:
  theme_set(theme_cowplot())
********************************************************


Attaching package: 'cowplot'

The following object is masked from 'package:ggpubr':

    get_legend


Attaching package: 'ggdag'

The following object is masked from 'package:stats':

    filter

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mcmcabn.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mcmcabn.Rmd’

SUMMARY: processing the following file failed:
  ‘mcmcabn.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 29.2Mb
  sub-directories of 1Mb or more:
    libs  28.1Mb
installed size is 17.4Mb
  sub-directories of 1Mb or more:
    libs  16.9Mb
Error(s) in re-building vignettes:
--- re-building ‘MCMCtree.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MCMCtree.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MCMCtree.Rmd’

--- re-building ‘MCMCtree_plot.Rmd’ using rmarkdown
Loading required package: ape
Loading required package: sn
Loading required package: stats4

Attaching package: 'sn'

The following object is masked from 'package:stats':

    sd

Loading required package: coda
The following objects are masked from MCMCtree.output (pos = 3):

    MCMCtree.phy, MCMCtree.posterior

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MCMCtree_plot.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MCMCtree_plot.Rmd’

SUMMARY: processing the following files failed:
  ‘MCMCtree.Rmd’ ‘MCMCtree_plot.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MCMCvis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MCMCvis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MCMCvis.Rmd’

SUMMARY: processing the following file failed:
  ‘MCMCvis.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Generation.Rmd’ using rmarkdown
Loading required package: BBmisc

Attaching package: 'BBmisc'

The following object is masked from 'package:base':

    isFALSE

Loading required package: ecr
Loading required package: smoof
Loading required package: ParamHelpers
Loading required package: checkmate
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Generation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Generation.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
Loading required package: BBmisc

Attaching package: 'BBmisc'

The following object is masked from 'package:base':

    isFALSE

Loading required package: ecr
Loading required package: smoof
Loading required package: ParamHelpers
Loading required package: checkmate
Loading required package: ggplot2
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following files failed:
  ‘Generation.Rmd’ ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   5.5Mb
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction.Rmd’

--- re-building ‘levelcoverageprob.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'levelcoverageprob.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘levelcoverageprob.Rmd’

SUMMARY: processing the following files failed:
  ‘introduction.Rmd’ ‘levelcoverageprob.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mde-Missing-Data-Explorer.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mde-Missing-Data-Explorer.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mde-Missing-Data-Explorer.Rmd’

SUMMARY: processing the following file failed:
  ‘mde-Missing-Data-Explorer.Rmd’

Error: Vignette re-building failed.
Execution halted
Package which this enhances but not available for checking: ‘JointAI’
Error(s) in re-building vignettes:
  ...
--- re-building ‘mdmr-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mdmr-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mdmr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘mdmr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Intro_and_usage_examples.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Intro_and_usage_examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Intro_and_usage_examples.Rmd’

SUMMARY: processing the following file failed:
  ‘Intro_and_usage_examples.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    doc       1.9Mb
    extdata   5.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘mds_intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mds_intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mds_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘mds_intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mdsstat_intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mdsstat_intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mdsstat_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘mdsstat_intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘data_input.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'data_input.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘data_input.Rmd’

--- re-building ‘meaRtoolsGeneralUsage.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'meaRtoolsGeneralUsage.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘meaRtoolsGeneralUsage.Rmd’

--- re-building ‘sttc.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sttc.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sttc.Rmd’

SUMMARY: processing the following files failed:
  ‘data_input.Rmd’ ‘meaRtoolsGeneralUsage.Rmd’ ‘sttc.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 25.4Mb
  sub-directories of 1Mb or more:
    doc    3.3Mb
    libs  21.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘extract_meta_data.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'extract_meta_data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘extract_meta_data.Rmd’

SUMMARY: processing the following file failed:
  ‘extract_meta_data.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘adjusted-pvalues.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'adjusted-pvalues.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘adjusted-pvalues.Rmd’

--- re-building ‘case-studies.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'case-studies.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘case-studies.Rmd’

--- re-building ‘mediana.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mediana.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mediana.Rmd’

SUMMARY: processing the following files failed:
  ‘adjusted-pvalues.Rmd’ ‘case-studies.Rmd’ ‘mediana.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘MEDseq.Rmd’ using rmarkdown

Package 'MEDseq' version 1.1.0.

See '?MEDseq' for a brief guide to how to use this R package.
See 'citation("MEDseq")' for citing the package in publications.
See 'MEDseq_news()' for new features, recent changes, and bug fixes.

 [>] state coding:
       [alphabet]  [label]  [long label] 
     1  FE          EM       Employment
     2  HE          FE       Further Education
     3  employment  HE       Higher Education
     4  joblessness JL       Joblessness
     5  school      SC       School
     6  training    TR       Training
 [>] 712 sequences in the data set
 [>] min/max sequence length: 71/71
Best model occurs at the min of the number of components considered

Best model occurs at the max of the number of components considered

Fontconfig error: Cannot load default config file
 [>] state coding:
       [alphabet]  [label]  [long label] 
     1  1           P        Parent
     2  2           L        Left
     3  3           M        Married
     4  4           L+M      Left+Marr
     5  5           C        Child
     6  6           L+C      Left+Child
     7  7           L+M+C    Left+Marr+Child
     8  8           D        Divorced
 [>] 2000 sequences in the data set
 [>] min/max sequence length: 16/16
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MEDseq.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MEDseq.Rmd’

SUMMARY: processing the following file failed:
  ‘MEDseq.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'TxDb.Hsapiens.UCSC.hg19.knownGene', 'org.Hs.eg.db'
Error(s) in re-building vignettes:
--- re-building ‘mega2rtutorial.Rmd’ using rmarkdown
Loading required package: SKAT
Loading required package: Matrix
Loading required package: SPAtest
Loading required package: pedgene
Loading required package: CompQuadForm
Loading required package: survey
Loading required package: grid
Loading required package: survival

Attaching package: 'survey'

The following object is masked from 'package:graphics':

    dotchart

Loading required package: kinship2
Loading required package: quadprog
Loading required package: gdsfmt
Quitting from lines 694-696 (mega2rtutorial.Rmd) 
Error: processing vignette 'mega2rtutorial.Rmd' failed with diagnostics:
there is no package called 'TxDb.Hsapiens.UCSC.hg19.knownGene'
--- failed re-building ‘mega2rtutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘mega2rtutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘MEGENA_pipeline_10062016.Rmd’ using rmarkdown
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MEGENA_pipeline_10062016.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MEGENA_pipeline_10062016.Rmd’

SUMMARY: processing the following file failed:
  ‘MEGENA_pipeline_10062016.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mekko-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mekko-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mekko-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘mekko-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘memery.Rmd’ using rmarkdown
Loading required package: showtext
Loading required package: sysfonts
Loading required package: showtextdb
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'memery.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘memery.Rmd’

SUMMARY: processing the following file failed:
  ‘memery.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    R     1.2Mb
    doc   2.9Mb
Error(s) in re-building vignettes:
--- re-building ‘Change_in_Mean.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Change_in_Mean.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Change_in_Mean.Rmd’

--- re-building ‘break_in_persistence.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'break_in_persistence.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘break_in_persistence.Rmd’

SUMMARY: processing the following files failed:
  ‘Change_in_Mean.Rmd’ ‘break_in_persistence.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘using_memoria.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using_memoria.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using_memoria.Rmd’

SUMMARY: processing the following file failed:
  ‘using_memoria.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘memor.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'memor.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘memor.Rmd’

SUMMARY: processing the following file failed:
  ‘memor.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Vignette_MR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Vignette_MR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Vignette_MR.Rmd’

SUMMARY: processing the following file failed:
  ‘Vignette_MR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mercator.Rmd’ using rmarkdown
hclust 
tsne 
mds 
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mercator.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mercator.Rmd’

SUMMARY: processing the following file failed:
  ‘mercator.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘merlin.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'merlin.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘merlin.Rmd’

SUMMARY: processing the following file failed:
  ‘merlin.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    data   2.7Mb
    libs   4.9Mb
installed size is 76.9Mb
  sub-directories of 1Mb or more:
    libs  76.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘metaBMA.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'metaBMA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘metaBMA.Rmd’

SUMMARY: processing the following file failed:
  ‘metaBMA.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'clpAPI', 'topGO', 'KEGGREST', 'ctc'
Error(s) in re-building vignettes:
  ...
--- re-building ‘MetabolicSurv.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MetabolicSurv.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MetabolicSurv.Rmd’

SUMMARY: processing the following file failed:
  ‘MetabolicSurv.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘ropls’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘MetaboLouise_Intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MetaboLouise_Intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MetaboLouise_Intro.Rmd’

SUMMARY: processing the following file failed:
  ‘MetaboLouise_Intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction_to_metaforest.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction_to_metaforest.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction_to_metaforest.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_metaforest.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘GEOmetadb’

Package suggested but not available for checking: ‘BiocStyle’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘metagenomeSeq’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'org.Hs.eg.db', 'annaffy', 'hgu133plus2.db', 'hgu133a.db',
  'hgu95av2.db'
Packages suggested but not available for checking: 'runjags', 'rjags'
Error(s) in re-building vignettes:
--- re-building ‘metan_start.Rmd’ using rmarkdown
[]=====================================================[]
[] Multi-Environment Trial Analysis (metan) v1.4.0     []
[] Author: Tiago Olivoto                               []
[] Type citation('metan') to know how to cite metan    []
[] Type vignette('metan_start') for a short tutorial   []
[] Visit http://bit.ly/2TIq6JE for a complete tutorial []
[]=====================================================[]
No issues detected while inspecting data.
`geom_smooth()` using formula 'y ~ x'
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'metan_start.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘metan_start.Rmd’

SUMMARY: processing the following file failed:
  ‘metan_start.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'hgu133plus2.db', 'doSMP'
Error(s) in re-building vignettes:
  ...
--- re-building ‘how_to_use_crosshairs.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'how_to_use_crosshairs.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘how_to_use_crosshairs.Rmd’

SUMMARY: processing the following file failed:
  ‘how_to_use_crosshairs.Rmd’

Error: Vignette re-building failed.
Execution halted
Errors in running code in vignettes:
when running code in ‘metaRNASeq.Rnw’
  ...
    estimateSizeFactorsForMatrix,
    getVarianceStabilizedData,
    varianceStabilizingTransformation


> library(HTSFilter)

  When sourcing ‘metaRNASeq.R’:
Error: there is no package called ‘HTSFilter’
Execution halted

  ‘metaRNASeq.Rnw’... failed
installed size is 78.6Mb
  sub-directories of 1Mb or more:
    libs  78.2Mb
Running ‘testthat.R’ [3s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
    Expected in: /usr/lib/libSystem.B.dylib
  
  ── 1. Error: knit_print() and include_meta() work in Rmd (@test-rmd.R#5)  ──────
  pandoc document conversion failed with error 6
  Backtrace:
   1. rmarkdown::render(...)
   2. rmarkdown:::convert(output_file, run_citeproc)
   3. rmarkdown::pandoc_convert(...)
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 59 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: knit_print() and include_meta() work in Rmd (@test-rmd.R#5) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘funnelinf.Rmd’ using rmarkdown
Warning in nullabor::decrypt("EwkU v7d7 9S YTV9d9TS Wo") :
  NAs introduced by coercion
To see the solution run nullabor::decrypt("nQTG mMZM AK CbrAZAbK 5H")
To see the solution run nullabor::decrypt("nQTG mMZM AK CbrAZAbK SS")
Warning in nullabor::decrypt("EwkU v7d7 9S YTV9d9TS Wu") :
  NAs introduced by coercion
To see the solution run nullabor::decrypt("nQTG mMZM AK CbrAZAbK SS")
Warning in nullabor::decrypt("EwkU v7d7 9S YTV9d9TS WW") :
  NAs introduced by coercion
To see the solution run nullabor::decrypt("nQTG mMZM AK CbrAZAbK SS")
To see the solution run nullabor::decrypt("nQTG mMZM AK CbrAZAbK SS")
To see the solution run nullabor::decrypt("nQTG mMZM AK CbrAZAbK SS")
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'funnelinf.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘funnelinf.Rmd’

--- re-building ‘metaviz.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'metaviz.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘metaviz.Rmd’

SUMMARY: processing the following files failed:
  ‘funnelinf.Rmd’ ‘metaviz.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘metawho.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'metawho.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘metawho.Rmd’

SUMMARY: processing the following file failed:
  ‘metawho.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    R      1.0Mb
    libs   3.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘UserGuide.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'UserGuide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘UserGuide.Rmd’

SUMMARY: processing the following file failed:
  ‘UserGuide.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    doc    2.3Mb
    help   2.0Mb
    libs   2.6Mb
Error(s) in re-building vignettes:
--- re-building ‘Visualization-tools.Rmd’ using rmarkdown
Scale for 'mag' is already present. Adding another scale for 'mag', which
will replace the existing scale.
Scale for 'mag' is already present. Adding another scale for 'mag', which
will replace the existing scale.
Scale for 'mag' is already present. Adding another scale for 'mag', which
will replace the existing scale.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Visualization-tools.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Visualization-tools.Rmd’

--- re-building ‘Working-with-data.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Working-with-data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Working-with-data.Rmd’

SUMMARY: processing the following files failed:
  ‘Visualization-tools.Rmd’ ‘Working-with-data.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 23.4Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    doc    1.1Mb
    libs  18.8Mb
    misc   1.1Mb
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    libs   6.6Mb
installed size is 18.7Mb
  sub-directories of 1Mb or more:
    libs  17.7Mb
Error(s) in re-building vignettes:
--- re-building ‘MFKnockoffs.Rmd’ using rmarkdown
Loading required package: Matrix
Loaded glmnet 3.0-2

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MFKnockoffs.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MFKnockoffs.Rmd’

--- re-building ‘advanced.Rmd’ using rmarkdown
Loading required package: Matrix
Loaded glmnet 3.0-2

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'advanced.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘advanced.Rmd’

--- re-building ‘fixed.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fixed.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fixed.Rmd’

SUMMARY: processing the following files failed:
  ‘MFKnockoffs.Rmd’ ‘advanced.Rmd’ ‘fixed.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘mgcviz.rmd’ using rmarkdown
Loading required package: mgcv
Loading required package: nlme
This is mgcv 1.8-31. For overview type 'help("mgcv-package")'.
Loading required package: qgam
Loading required package: ggplot2
Registered S3 method overwritten by 'mgcViz':
  method from  
  +.gg   GGally

Attaching package: 'mgcViz'

The following objects are masked from 'package:stats':

    qqline, qqnorm, qqplot

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mgcviz.rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mgcviz.rmd’

SUMMARY: processing the following file failed:
  ‘mgcviz.rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘mgdrive_examples.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mgdrive_examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mgdrive_examples.Rmd’

--- re-building ‘mgdrive_math.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mgdrive_math.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mgdrive_math.Rmd’

--- re-building ‘mgdrive_run.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mgdrive_run.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mgdrive_run.Rmd’

SUMMARY: processing the following files failed:
  ‘mgdrive_examples.Rmd’ ‘mgdrive_math.Rmd’ ‘mgdrive_run.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 22.5Mb
  sub-directories of 1Mb or more:
    doc    1.1Mb
    libs  21.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘mgwrsar-basic_examples.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mgwrsar-basic_examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mgwrsar-basic_examples.Rmd’

SUMMARY: processing the following file failed:
  ‘mgwrsar-basic_examples.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘fdr-test.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fdr-test.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fdr-test.Rmd’

--- re-building ‘fwer-support-test.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fwer-support-test.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fwer-support-test.Rmd’

--- re-building ‘fwer-ztest.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fwer-ztest.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fwer-ztest.Rmd’

SUMMARY: processing the following files failed:
  ‘fdr-test.Rmd’ ‘fwer-support-test.Rmd’ ‘fwer-ztest.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘mica-dar.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mica-dar.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mica-dar.Rmd’

--- re-building ‘mica-search.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mica-search.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mica-search.Rmd’

SUMMARY: processing the following files failed:
  ‘mica-dar.Rmd’ ‘mica-search.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.2Mb
  sub-directories of 1Mb or more:
    libs   8.9Mb
Error(s) in re-building vignettes:
--- re-building ‘diagnosticPlotting.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'diagnosticPlotting.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘diagnosticPlotting.Rmd’

--- re-building ‘miceAlgorithm.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'miceAlgorithm.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘miceAlgorithm.Rmd’

--- re-building ‘usingMiceRanger.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'usingMiceRanger.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘usingMiceRanger.Rmd’

SUMMARY: processing the following files failed:
  ‘diagnosticPlotting.Rmd’ ‘miceAlgorithm.Rmd’ ‘usingMiceRanger.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘biotools’
Package unavailable to check Rd xrefs: ‘biotools’
Running examples in ‘micompr-Ex.R’ failed
The error most likely occurred in:

> ### Name: assumptions.cmpoutput
> ### Title: Get assumptions for parametric tests performed on output
> ###   comparisons
> ### Aliases: assumptions.cmpoutput
> 
> ### ** Examples
> 
> 
> # Create a cmpoutput object from the provided datasets
> cmp <- cmpoutput("All", 0.9, pphpc_ok$data[["All"]], pphpc_ok$obs_lvls)
> 
> # Get the assumptions for the parametric tests performed in cmp
> acmp <- assumptions(cmp)
sROC 0.1-2 loaded
MANOVA assumptions require 'MVN' and 'biotools' packages.
Error in `*tmp*`[[i]] : subscript out of bounds
Calls: assumptions -> assumptions.cmpoutput
Execution halted
Running ‘testthat.R’ [11s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  subscript out of bounds
  Backtrace:
   1. micompr::assumptions(mic1a)
   2. micompr:::assumptions.micomp(mic1a)
   3. base::lapply(obj, function(x) assumptions(x))
   4. micompr:::FUN(X[[i]], ...)
   6. micompr:::assumptions.cmpoutput(x)
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 291 | SKIPPED: 0 | WARNINGS: 72 | FAILED: 2 ]
  1. Error: assumptions.cmpoutput creates the correct object (@test_cmpoutput.R#214) 
  2. Error: micomp assumptions have the correct properties (@test_micomp.R#281) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘paper.Rnw’ using knitr
Quitting from lines 341-342 (paper.Rnw) 
Error: processing vignette 'paper.Rnw' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘paper.Rnw’

--- re-building ‘tolatex-examples.Rnw’ using knitr
Warning in wilcox.test.default(x = c(-2.17390550005803e-11, -2.17097451127302e-11,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(2.13309370167281e-11, 2.12594386539422e-11,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(1.99236183107132e-11, 1.97388771994156e-11,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(1.00897068477934e-12, 1.02406971791424e-12,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(8.95727936267576e-13, 8.4909856923332e-13,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(9.80548975348938e-13, 8.81072992342524e-13,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(5.90887339058099e-11, 6.09077233093558e-11,  :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = c(9.97119053991469e-15, 9.92695509127728e-15,  :
  cannot compute exact p-value with ties
--- finished re-building ‘tolatex-examples.Rnw’

SUMMARY: processing the following file failed:
  ‘paper.Rnw’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘microhaplot-data-prep.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'microhaplot-data-prep.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘microhaplot-data-prep.Rmd’

--- re-building ‘microhaplot-walkthrough.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'microhaplot-walkthrough.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘microhaplot-walkthrough.Rmd’

--- re-building ‘troubleshoot.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'troubleshoot.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘troubleshoot.Rmd’

SUMMARY: processing the following files failed:
  ‘microhaplot-data-prep.Rmd’ ‘microhaplot-walkthrough.Rmd’
  ‘troubleshoot.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘microsamplingDesign.Rmd’ using rmarkdown
Loading required package: Rcpp
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'microsamplingDesign.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘microsamplingDesign.Rmd’

SUMMARY: processing the following file failed:
  ‘microsamplingDesign.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘gWidgets2RGtk2’
Error(s) in re-building vignettes:
--- re-building ‘milorGWAS.Rmd’ using rmarkdown
Loading required package: gaston
Loading required package: Rcpp
Loading required package: RcppParallel

Attaching package: 'RcppParallel'

The following object is masked from 'package:Rcpp':

    LdFlags

Gaston set number of threads to 2. Use setThreadOptions() to modify this.

Attaching package: 'gaston'

The following object is masked from 'package:stats':

    sigma

The following objects are masked from 'package:base':

    cbind, rbind


Attaching package: 'milorGWAS'

The following object is masked from 'package:gaston':

    qqplot.pvalues

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'milorGWAS.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘milorGWAS.Rmd’

SUMMARY: processing the following file failed:
  ‘milorGWAS.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mimsy.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mimsy.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mimsy.Rmd’

SUMMARY: processing the following file failed:
  ‘mimsy.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 22.5Mb
  sub-directories of 1Mb or more:
    libs  22.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘miniMeta_manual.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'miniMeta_manual.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘miniMeta_manual.Rmd’

SUMMARY: processing the following file failed:
  ‘miniMeta_manual.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MInt.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MInt.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MInt.Rmd’

SUMMARY: processing the following file failed:
  ‘MInt.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘mipred_for_glm.Rmd’ using rmarkdown

Attaching package: 'mice'

The following objects are masked from 'package:base':

    cbind, rbind

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mipred_for_glm.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mipred_for_glm.Rmd’

SUMMARY: processing the following file failed:
  ‘mipred_for_glm.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'globaltest', 'GlobalAncova'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
installed size is  8.1Mb
  sub-directories of 1Mb or more:
    R      1.4Mb
    libs   6.1Mb
Package unavailable to check Rd xrefs: ‘rgl’
Running examples in ‘misc3d-Ex.R’ failed
The error most likely occurred in:

> ### Name: contour3d
> ### Title: Draw an Isosurface, a Three Dimension Contour Plot
> ### Aliases: contour3d
> ### Keywords: hplot
> 
> ### ** Examples
> 
>   #Example 1: Draw a ball
>   f <- function(x, y, z)x^2+y^2+z^2
>   x <- seq(-2,2,len=20)
>   contour3d(f,4,x,x,x)
Error in loadRGL() : rgl is mot available
Calls: contour3d -> drawScene.rgl -> loadRGL
Execution halted
Packages suggested but not available for checking: 'mixAK', 'BRugs'
Package unavailable to check Rd xrefs: ‘mixAK’
Error(s) in re-building vignettes:
  ...
--- re-building ‘miscset.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'miscset.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘miscset.Rmd’

SUMMARY: processing the following file failed:
  ‘miscset.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘miselect.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'miselect.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘miselect.Rmd’

SUMMARY: processing the following file failed:
  ‘miselect.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  simcensor.cpp:91:16: warning: result of comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
  simcensor.cpp:91:41: warning: result of comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
  simcensor.cpp:95:17: warning: result of comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/missDeaths.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Generating-missing-values.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Generating-missing-values.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Generating-missing-values.Rmd’

SUMMARY: processing the following file failed:
  ‘Generating-missing-values.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘vignette_missRanger.Rmd’ using rmarkdown
Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: mice

Attaching package: 'mice'

The following objects are masked from 'package:base':

    cbind, rbind

Loading required package: survival
Warning: Unknown or uninitialised column: 'df.residual'.
Warning in pool.fitlist(getfit(object), dfcom = dfcom) :
  Large sample assumed.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette_missRanger.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette_missRanger.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette_missRanger.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘case_study_war_networks.Rmd’ using rmarkdown

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union


Attaching package: 'missSBM'

The following objects are masked from 'package:stats':

    simulate, smooth

The following object is masked from 'package:base':

    sample

Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'case_study_war_networks.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘case_study_war_networks.Rmd’

SUMMARY: processing the following file failed:
  ‘case_study_war_networks.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘README.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'README.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘README.Rmd’

SUMMARY: processing the following file failed:
  ‘README.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 25.3Mb
  sub-directories of 1Mb or more:
    libs  23.1Mb
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    libs   7.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘mixedClustLite.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mixedClustLite.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mixedClustLite.Rmd’

SUMMARY: processing the following file failed:
  ‘mixedClustLite.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘MixSIAR-Ex.R’ failed
The error most likely occurred in:

> ### Name: mixsiar_gui
> ### Title: Run the GUI version of MixSIAR
> ### Aliases: mixsiar_gui
> 
> ### ** Examples
> 
> mixsiar_gui()
Loading required package: gWidgetsRGtk2
Loading required package: RGtk2
Loading required package: gWidgets
Loading required package: cairoDevice

 *** caught segfault ***
address 0x0, cause 'memory not mapped'

Traceback:
 1: .RGtkCall("S_gtk_widget_show", object, PACKAGE = "RGtk2")
 2: method(obj, ...)
 3: getWidget(obj)$Show()
 4: `.visible<-`(`*tmp*`, toolkit, ..., value = value)
 5: `.visible<-`(`*tmp*`, toolkit, ..., value = value)
 6: gWidgets::`visible<-`(`*tmp*`, value = TRUE)
 7: gWidgets::`visible<-`(`*tmp*`, value = TRUE)
 8: mixsiar_gui()
An irrecoverable exception occurred. R is aborting now ...
Error(s) in re-building vignettes:
  ...
--- re-building ‘MKdescr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MKdescr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MKdescr.Rmd’

SUMMARY: processing the following file failed:
  ‘MKdescr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MKinfer.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MKinfer.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MKinfer.Rmd’

SUMMARY: processing the following file failed:
  ‘MKinfer.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MKmisc.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MKmisc.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MKmisc.Rmd’

SUMMARY: processing the following file failed:
  ‘MKmisc.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MKpower.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MKpower.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MKpower.Rmd’

SUMMARY: processing the following file failed:
  ‘MKpower.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘MLID.Rmd’ using rmarkdown
              pcntID
Tower Hamlets  10.58
              pcntN
Tower Hamlets  0.41
              pcntID
Tower Hamlets  10.58
              pcntN
Tower Hamlets  0.41
              impact
Tower Hamlets   2566
              impact
Tower Hamlets  25.66
              scldSD
Tower Hamlets   6.85
              scldMax
Tower Hamlets   30.78
              pNYgtrNX
Tower Hamlets     44.5
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MLID.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MLID.Rmd’

SUMMARY: processing the following file failed:
  ‘MLID.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'minfi', 'IlluminaHumanMethylation450kmanifest'
Error(s) in re-building vignettes:
  ...
--- re-building ‘gwas-manual.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gwas-manual.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gwas-manual.Rmd’

SUMMARY: processing the following file failed:
  ‘gwas-manual.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘survival.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'survival.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘survival.Rmd’

SUMMARY: processing the following file failed:
  ‘survival.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mlrMBO.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mlrMBO.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mlrMBO.Rmd’

SUMMARY: processing the following file failed:
  ‘mlrMBO.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘mlr.Rmd’ using rmarkdown
Loading required package: ParamHelpers
'mlr' is in maintenance mode since July 2019. Future development
efforts will go into its successor 'mlr3' (<https://mlr3.mlr-org.com>).

Attaching package: 'BBmisc'

The following object is masked from 'package:base':

    isFALSE

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mlr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mlr.Rmd’

SUMMARY: processing the following file failed:
  ‘mlr.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 34.5Mb
  sub-directories of 1Mb or more:
    libs  34.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘MLZ.Rmd’ using rmarkdown
`stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
Data from slot @Len_df used to calculate mean lengths.
Data from slot @Len_df used to plot modal lengths.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MLZ.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MLZ.Rmd’

SUMMARY: processing the following file failed:
  ‘MLZ.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 22.3Mb
  sub-directories of 1Mb or more:
    libs  21.6Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘MMABIGvignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MMABIGvignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MMABIGvignette.Rmd’

SUMMARY: processing the following file failed:
  ‘MMABIGvignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MMAvignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MMAvignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MMAvignette.Rmd’

SUMMARY: processing the following file failed:
  ‘MMAvignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘ALL’
Running examples in ‘MMDvariance-Ex.R’ failed
The error most likely occurred in:

> ### Name: gsMMD.v
> ### Title: Gene selection based on variances by using a mixture of marginal
> ###   distributions
> ### Aliases: gsMMD.v
> ### Keywords: classif
> 
> ### ** Examples
> 
>       t1 = proc.time()
>       library(ALL)
Error in library(ALL) : there is no package called ‘ALL’
Execution halted
installed size is 17.6Mb
  sub-directories of 1Mb or more:
    libs  17.4Mb
installed size is 15.1Mb
  sub-directories of 1Mb or more:
    libs  14.8Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘mniw-distributions.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mniw-distributions.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mniw-distributions.Rmd’

SUMMARY: processing the following file failed:
  ‘mniw-distributions.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘doMPI’

Packages which this enhances but not available for checking:
  'miraculix', 'MoBPSmaps'
Package required but not available: ‘doMPI’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘mocks-and-testthat.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mocks-and-testthat.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mocks-and-testthat.Rmd’

SUMMARY: processing the following file failed:
  ‘mocks-and-testthat.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘kmeans.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'kmeans.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘kmeans.Rmd’

--- re-building ‘linear-regression.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'linear-regression.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘linear-regression.Rmd’

SUMMARY: processing the following files failed:
  ‘kmeans.Rmd’ ‘linear-regression.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘modelplotr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'modelplotr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘modelplotr.Rmd’

SUMMARY: processing the following file failed:
  ‘modelplotr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘vignette_modelStudio.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette_modelStudio.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette_modelStudio.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette_modelStudio.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘why-moderndive.Rmd’ using rmarkdown
`geom_smooth()` using formula 'y ~ x'
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'why-moderndive.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘why-moderndive.Rmd’

SUMMARY: processing the following file failed:
  ‘why-moderndive.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Conduct.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Conduct.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Conduct.Rmd’

--- re-building ‘Design.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Design.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Design.Rmd’

SUMMARY: processing the following files failed:
  ‘Conduct.Rmd’ ‘Design.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘modistools-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'modistools-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘modistools-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘modistools-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MODIStsp.Rmd’ using rmarkdown
[WARNING] Note with key '1^' defined at line 939 column 1 but not used.
[WARNING] Note with key '2^' defined at line 941 column 1 but not used.
[WARNING] Note with key '3^' defined at line 943 column 1 but not used.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MODIStsp.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MODIStsp.Rmd’

SUMMARY: processing the following file failed:
  ‘MODIStsp.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘irace’
Error(s) in re-building vignettes:
--- re-building ‘Basic_Usage.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘Basic_Usage.Rmd’

--- re-building ‘Comparison_Usage.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 302-315 (Comparison_Usage.Rmd) 
Error: processing vignette 'Comparison_Usage.Rmd' failed with diagnostics:
there is no package called 'irace'
--- failed re-building ‘Comparison_Usage.Rmd’

--- re-building ‘Modification_Usage.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘Modification_Usage.Rmd’

--- re-building ‘problem-definition.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘problem-definition.Rmd’

--- re-building ‘writing-functions-for-moeadr.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘writing-functions-for-moeadr.Rmd’

SUMMARY: processing the following file failed:
  ‘Comparison_Usage.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘MoEClust.Rmd’ using rmarkdown

Package 'MoEClust' version 1.3.0.

Type '?MoEClust' to see a brief guide to how to use this R package.
Type 'citation("MoEClust")' for citing the package in publications.
Type 'MoE_news()' to see new features recent changes and bug fixes.







Fontconfig error: Cannot load default config file
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MoEClust.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MoEClust.Rmd’

SUMMARY: processing the following file failed:
  ‘MoEClust.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘nb_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'nb_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nb_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘nb_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘molaR_vignette.Rmd’ using rmarkdown
Loading required package: alphahull
Loading required package: rgl
Loading required package: Rvcg
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'molaR_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘molaR_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘molaR_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  7.9Mb
  sub-directories of 1Mb or more:
    R      1.1Mb
    doc    1.7Mb
    libs   4.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘monkeylearn_intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'monkeylearn_intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘monkeylearn_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘monkeylearn_intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘tutorial.Rmd’ using rmarkdown
Loading required package: maptools
Loading required package: sp
Checking rgeos availability: TRUE
Assuming the columns are ordered as: species, collector name, collector number, herbarium acronym and herbarium number
Assuming the columns are ordered as: species, collector name, collector number, herbarium acronym, herbarium number, country, state, municipality
Assuming the columns are ordered as: Character_in_description, complement, separator, and the species in the remaining columns
Assuming the columns are ordered as: species, month (number) and phenology
Assuming the columns are ordered as: species, longitude, latitude, phenology
Assuming the columns are ordered as: species, longitude and latitude
Assuming the columns are ordered as: species, longitude and latitude
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘moonBook.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'moonBook.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘moonBook.Rmd’

--- re-building ‘moonBook_update.Rmd’ using rmarkdown
Loading required package: moonBook
Loading required package: ztable
Welcome to package ztable ver 0.2.0
Loading required package: magrittr
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'moonBook_update.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘moonBook_update.Rmd’

SUMMARY: processing the following files failed:
  ‘moonBook.Rmd’ ‘moonBook_update.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.1Mb
  sub-directories of 1Mb or more:
    data   2.0Mb
    libs   6.5Mb
Error(s) in re-building vignettes:
--- re-building ‘mortAAR_vignette-1.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mortAAR_vignette-1.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mortAAR_vignette-1.Rmd’

--- re-building ‘mortAAR_vignette_extended.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mortAAR_vignette_extended.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mortAAR_vignette_extended.Rmd’

SUMMARY: processing the following files failed:
  ‘mortAAR_vignette-1.Rmd’ ‘mortAAR_vignette_extended.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Manual.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Manual.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Manual.Rmd’

SUMMARY: processing the following file failed:
  ‘Manual.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Installation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Installation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Installation.Rmd’

--- re-building ‘Intro.Rmd’ using rmarkdown

HINT: Most of the functions work well with 'poissonL', however for complex mortality laws like Heligman-Pollard (HP) one can obtain a better fit using other loss functions (e.g. 'LF2'). You are strongly encouraged to test different option before deciding on the final version. The results might be slightly different.

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Intro.Rmd’

SUMMARY: processing the following files failed:
  ‘Installation.Rmd’ ‘Intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘using-the-mortalityTables-package.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: scales
Loading table dataset 'Austria_Annuities'
Loading table dataset 'Austria_Annuities_AVOe1996R'
Loading table dataset 'Austria_Annuities_AVOe2005R'
Loading table dataset 'Austria_Annuities_EROMF'
Loading table dataset 'Austria_Annuities_RR67'
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using-the-mortalityTables-package.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using-the-mortalityTables-package.Rmd’

SUMMARY: processing the following file failed:
  ‘using-the-mortalityTables-package.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘mosaicData-Ex.R’ failed
The error most likely occurred in:

> ### Name: SnowGR
> ### Title: Snowfall data for Grand Rapids, MI
> ### Aliases: SnowGR
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(SnowGR)
> if (require(mosaic)) {
+   df_stats(~ Total, data = SnowGR)
+   gf_histogram( ~ Total, data = SnowGR)
+   gf_point(Total ~ SeasonStart, data = SnowGR) %>%
+     gf_smooth()
+ }
Loading required package: mosaic
Loading required package: dplyr

Attaching package: ‘dplyr’

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

Loading required package: lattice
Loading required package: ggformula
Loading required package: ggplot2
Loading required package: ggstance

Attaching package: ‘ggstance’

The following objects are masked from ‘package:ggplot2’:

    GeomErrorbarh, geom_errorbarh

Error: package or namespace load failed for ‘ggformula’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
 there is no package called ‘stringi’
Failed with error:  ‘package ‘ggformula’ could not be loaded’
> if (require(tidyr)) {
+   Snow2 <- 
+     SnowGR %>%
+     gather("Time", "Snowfall", Jul:Total) 
+   gf_boxplot(Snowfall ~ Time, data = Snow2)
+ }
Loading required package: tidyr
Error in gf_boxplot(Snowfall ~ Time, data = Snow2) : 
  could not find function "gf_boxplot"
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Basics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Basics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Basics.Rmd’

SUMMARY: processing the following file failed:
  ‘Basics.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘demo.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'demo.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘demo.Rmd’

--- re-building ‘multifidelity.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'multifidelity.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘multifidelity.Rmd’

SUMMARY: processing the following files failed:
  ‘demo.Rmd’ ‘multifidelity.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘motmot.Rmd’ using rmarkdown
Loading required package: ape
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'motmot.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘motmot.Rmd’

SUMMARY: processing the following file failed:
  ‘motmot.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘motoRneuron.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: dygraphs
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'motoRneuron.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘motoRneuron.Rmd’

SUMMARY: processing the following file failed:
  ‘motoRneuron.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   2.0Mb
    libs   2.5Mb
Error(s) in re-building vignettes:
--- re-building ‘estimatingWindSpeed.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'estimatingWindSpeed.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘estimatingWindSpeed.Rmd’

--- re-building ‘windEstimationParameters.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'windEstimationParameters.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘windEstimationParameters.Rmd’

SUMMARY: processing the following files failed:
  ‘estimatingWindSpeed.Rmd’ ‘windEstimationParameters.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘Heatplus’
installed size is 49.8Mb
  sub-directories of 1Mb or more:
    R             1.1Mb
    libs         46.0Mb
    mathematica   1.5Mb
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(mpMap2)
  > 
  > omp_set_num_threads(1)
  Error in omp_set_num_threads(1) : Not built with openmp suppport
  Execution halted
installed size is 10.4Mb
  sub-directories of 1Mb or more:
    libs   9.2Mb
Error(s) in re-building vignettes:
--- re-building ‘introduction-bayen_kuhlmann_2011.rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction-bayen_kuhlmann_2011.rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction-bayen_kuhlmann_2011.rmd’

SUMMARY: processing the following file failed:
  ‘introduction-bayen_kuhlmann_2011.rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘intro.Rmd’ using rmarkdown
Extracting simulation results from file:
/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/mptools.Rcheck/mptools/example.mp
Extracting population metadata from file:
/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/mptools.Rcheck/mptools/example.mp
Extracting simulation results from file:
/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/mptools.Rcheck/mptools/example.mp
rgdal: version: 1.4-8, (SVN revision 845)
 Geospatial Data Abstraction Library extensions to R successfully loaded
 Loaded GDAL runtime: GDAL 2.4.2, released 2019/06/28
 Path to GDAL shared files: /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.0/rgdal/gdal
 GDAL binary built with GEOS: FALSE 
 Loaded PROJ.4 runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520]
 Path to PROJ.4 shared files: /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.0/rgdal/proj
 Linking to sp version: 1.4-1 
Extracting simulation results from file:
/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/mptools.Rcheck/mptools/example.mp
Creating gif animation.
Fontconfig error: Cannot load default config file
Output at: dynamics.gif
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro.Rmd’

SUMMARY: processing the following file failed:
  ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘mrbayes-Ex.R’ failed
The error most likely occurred in:

> ### Name: mr_egger_rjags
> ### Title: Bayesian implementation of the MR-Egger model with choice of
> ###   prior distributions fitted using JAGS.
> ### Aliases: mr_egger_rjags
> 
> ### ** Examples
> 
> data(bmi_insulin)
> fit <- mr_egger_rjags(bmi_insulin, n.chains = 1)
Error in loadNamespace(name) : there is no package called ‘rjags’
Calls: mr_egger_rjags ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 3 | SKIPPED: 2 | WARNINGS: 0 | FAILED: 12 ]
  1. Error: MR-Egger using default prior method (@test-mr_egger_rjags.R#16) 
  2. Error: MR-Egger using weak prior method (@test-mr_egger_rjags.R#34) 
  3. Error: MR-Egger using pseudo prior method (@test-mr_egger_rjags.R#53) 
  4. Error: MR-Egger using betaprior and sigmaprior method (@test-mr_egger_rjags.R#91) 
  5. Error: IVW using default prior method (@test-mr_ivw_rjags.R#20) 
  6. Error: IVW using weak prior method (@test-mr_ivw_rjags.R#36) 
  7. Error: IVW using pseudo prior method (@test-mr_ivw_rjags.R#51) 
  8. Error: IVW using beta prior method (@test-mr_ivw_rjags.R#67) 
  9. Error: Radial-Egger using default prior method (@test-mr_radialegger_rjags.R#15) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘mrbsizeR.Rmd’ using rmarkdown
Loading required package: spam
Loading required package: dotCall64
Loading required package: grid
Spam version 2.5-1 (2019-12-12) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction 
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.

Attaching package: 'spam'

The following objects are masked from 'package:base':

    backsolve, forwardsolve

Loading required package: maps
See https://github.com/NCAR/Fields for
 an extensive vignette, other supplements and source code 
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mrbsizeR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mrbsizeR.Rmd’

SUMMARY: processing the following file failed:
  ‘mrbsizeR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mrf2d.Rmd’ using rmarkdown
Scale for 'x' is already present. Adding another scale for 'x', which will
replace the existing scale.
Scale for 'y' is already present. Adding another scale for 'y', which will
replace the existing scale.
Scale for 'fill' is already present. Adding another scale for 'fill', which
will replace the existing scale.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mrf2d.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mrf2d.Rmd’

SUMMARY: processing the following file failed:
  ‘mrf2d.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 16.1Mb
  sub-directories of 1Mb or more:
    data   1.6Mb
    libs  14.0Mb
File ‘MRwarping/libs/MRwarping.so’:
  Found ‘_rand’, possibly from ‘rand’ (C)
    Object: ‘interfaceRC_warp.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘msaenet.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'msaenet.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘msaenet.Rmd’

SUMMARY: processing the following file failed:
  ‘msaenet.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘msaR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'msaR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘msaR.Rmd’

SUMMARY: processing the following file failed:
  ‘msaR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘details.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'details.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘details.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following files failed:
  ‘details.Rmd’ ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘CheckingSynth.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'CheckingSynth.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘CheckingSynth.Rmd’

--- re-building ‘UsingTimeSeries.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'UsingTimeSeries.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘UsingTimeSeries.Rmd’

--- re-building ‘WorkingWithMSCMT.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'WorkingWithMSCMT.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘WorkingWithMSCMT.Rmd’

SUMMARY: processing the following files failed:
  ‘CheckingSynth.Rmd’ ‘UsingTimeSeries.Rmd’ ‘WorkingWithMSCMT.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mscstext4r_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mscstext4r_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mscstext4r_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘mscstext4r_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mscsweblm4r_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mscsweblm4r_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mscsweblm4r_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘mscsweblm4r_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 41.6Mb
  sub-directories of 1Mb or more:
    R      1.4Mb
    doc    1.1Mb
    libs  38.6Mb
installed size is 46.4Mb
  sub-directories of 1Mb or more:
    libs  46.0Mb
Error(s) in re-building vignettes:
--- re-building ‘README.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'README.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘README.Rmd’

--- re-building ‘msgl-getting-started.Rmd’ using rmarkdown
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'msgl-getting-started.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘msgl-getting-started.Rmd’

SUMMARY: processing the following files failed:
  ‘README.Rmd’ ‘msgl-getting-started.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘msigdbr-intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'msigdbr-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘msigdbr-intro.Rmd’

SUMMARY: processing the following file failed:
  ‘msigdbr-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘msir.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in normalizePath(f2) :
  path[1]="webshotd9471e091d75.png": No such file or directory
Warning in file(con, "rb") :
  cannot open file 'webshotd9471e091d75.png': No such file or directory
Quitting from lines 102-104 (msir.Rmd) 
Error: processing vignette 'msir.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘msir.Rmd’

SUMMARY: processing the following file failed:
  ‘msir.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘msmtools.Rmd’ using rmarkdown_notangle
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'msmtools.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘msmtools.Rmd’

SUMMARY: processing the following file failed:
  ‘msmtools.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 17.7Mb
  sub-directories of 1Mb or more:
    help   1.0Mb
    libs  16.6Mb
Running examples in ‘mssqlR-Ex.R’ failed
Error(s) in re-building vignettes:
  ...
--- re-building ‘mstherm.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mstherm.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mstherm.Rmd’

SUMMARY: processing the following file failed:
  ‘mstherm.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘guide.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'guide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘guide.Rmd’

SUMMARY: processing the following file failed:
  ‘guide.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘MST-Ex.R’ failed
The error most likely occurred in:

> ### Name: MST
> ### Title: Multivariate Survival Trees
> ### Aliases: MST splitting.stat.MST1 splitting.stat.MST2
> ###   splitting.stat.MST3 splitting.stat.MST4
> ### Keywords: Trees Survival Multivariate Correlated
> 
> ### ** Examples
> 
> set.seed(186117)
> data <- rmultime(N = 200, K = 4, beta = c(-1, 0.8, 0.8, 0, 0), cutoff = c(0.5, 0.3, 0, 0),
+     model = "marginal.multivariate.exponential", rho = 0.65)$dat
> test <- rmultime(N = 100, K = 4, beta = c(-1, 0.8, 0.8, 0, 0), cutoff = c(0.5, 0.3, 0, 0),
+     model = "marginal.multivariate.exponential", rho = 0.65)$dat
> 
> #Construct Multivariate Survival Tree:
> fit <- MST(formula = Surv(time, status) ~ x1 + x2 + x3 + x4 | id, data, test,
+     method = "marginal", minsplit = 100, minevents = 20, selection.method = "test.sample")
Error in plot.window(...) : need finite 'ylim' values
Calls: MST -> plot -> plot.default -> localWindow -> plot.window
In addition: Warning messages:
1: In min(x) : no non-missing arguments to min; returning Inf
2: In max(x) : no non-missing arguments to max; returning -Inf
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mstrio.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mstrio.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mstrio.Rmd’

SUMMARY: processing the following file failed:
  ‘mstrio.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘MTA.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MTA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MTA.Rmd’

--- re-building ‘MTA_Scenario.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MTA_Scenario.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MTA_Scenario.Rmd’

SUMMARY: processing the following files failed:
  ‘MTA.Rmd’ ‘MTA_Scenario.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘create_mtc_device.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'create_mtc_device.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building 'create_mtc_device.Rmd'

--- re-building ‘simulate_map_gcode.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'simulate_map_gcode.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building 'simulate_map_gcode.Rmd'

SUMMARY: processing the following files failed:
  ‘create_mtc_device.Rmd’ ‘simulate_map_gcode.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘workflow.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'workflow.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘workflow.Rmd’

SUMMARY: processing the following file failed:
  ‘workflow.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘mudata2.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mudata2.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mudata2.Rmd’

--- re-building ‘mudata_create.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mudata_create.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mudata_create.Rmd’

SUMMARY: processing the following files failed:
  ‘mudata2.Rmd’ ‘mudata_create.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    libs   4.8Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘rmd.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rmd.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rmd.Rmd’

SUMMARY: processing the following file failed:
  ‘rmd.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'org.Hs.eg.db', 'org.Mm.eg.db', 'org.Ce.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘lmer-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lmer-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lmer-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘lmer-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 76.7Mb
  sub-directories of 1Mb or more:
    libs  76.4Mb
Error(s) in re-building vignettes:
--- re-building ‘panel-positioning.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'panel-positioning.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘panel-positioning.Rmd’

--- re-building ‘scaling-clipping-images.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'scaling-clipping-images.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘scaling-clipping-images.Rmd’

SUMMARY: processing the following files failed:
  ‘panel-positioning.Rmd’ ‘scaling-clipping-images.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘multistateutils-Ex.R’ failed
The error most likely occurred in:

> ### Name: cohort_simulation
> ### Title: Runs a cohort discrete event simulation
> ### Aliases: cohort_simulation
> 
> ### ** Examples
> 
> library(multistateutils)
> library(mstate)
Loading required package: survival
> library(flexsurv)
> 
> # Convert data to long
> data(ebmt3)
> tmat <- trans.illdeath()
> long <- msprep(time=c(NA, 'prtime', 'rfstime'),
+                status=c(NA, 'prstat', 'rfsstat'),
+                data=ebmt3,
+                trans=tmat,
+                keep=c('age', 'dissub'))
> 
> # Fit parametric models
> models <- lapply(1:3, function(i) {
+     flexsurvreg(Surv(time, status) ~ age + dissub, data=long, dist='weibull')
+ })
> 
> sim <- cohort_simulation(models, ebmt3, tmat)

 *** caught illegal operation ***
address 0x10947c8e0, cause 'illegal opcode'

Traceback:
 1: desCpp(transitions, trans_mat, newdata_mat, start_times, start_states -     1, tcovs)
 2: data.table::as.data.table(desCpp(transitions, trans_mat, newdata_mat,     start_times, start_states - 1, tcovs))
 3: run_sim(transition_list, attr_mat, trans_mat, tcovs, start_times,     start_states)
 4: state_occupancy(models, trans_mat, newdata, tcovs, start_time,     start_state, ci, M, agelimit, agecol, agescale)
 5: cohort_simulation(models, ebmt3, tmat)
An irrecoverable exception occurred. R is aborting now ...
Running ‘testthat.R’ [3s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  32: withOneRestart(expr, restarts[[1L]])
  33: withRestarts(testthat_abort_reporter = function() NULL, force(code))
  34: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,     {        reporter$start_file(basename(path))        lister$start_file(basename(path))        source_file(path, new.env(parent = env), chdir = TRUE,             wrap = wrap)        reporter$.end_context()        reporter$end_file()    })
  35: FUN(X[[i]], ...)
  36: lapply(paths, test_file, env = env, reporter = current_reporter,     start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
  37: force(code)
  38: doWithOneRestart(return(expr), restart)
  39: withOneRestart(expr, restarts[[1L]])
  40: withRestarts(testthat_abort_reporter = function() NULL, force(code))
  41: with_reporter(reporter = current_reporter, results <- lapply(paths,     test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,     load_helpers = FALSE, wrap = wrap))
  42: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,     stop_on_warning = stop_on_warning, wrap = wrap)
  43: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,     ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,     wrap = wrap)
  44: test_package_dir(package = package, test_path = test_path, filter = filter,     reporter = reporter, ..., stop_on_failure = stop_on_failure,     stop_on_warning = stop_on_warning, wrap = wrap)
  45: test_check("multistateutils")
  An irrecoverable exception occurred. R is aborting now ...
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   4.9Mb
installed size is 42.0Mb
  sub-directories of 1Mb or more:
    libs  41.9Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘using_musica.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using_musica.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using_musica.Rmd’

SUMMARY: processing the following file failed:
  ‘using_musica.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [1s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  > 
  > test_check("mustashe")
  ── 1. Failure: stashing works (@test-stash.R#53)  ──────────────────────────────
  file_time(file.path(target_dir, "a.rds")) == old_rds_time isn't false.
  
  ── 2. Failure: stashing works (@test-stash.R#54)  ──────────────────────────────
  file_time(file.path(target_dir, "a.hash")) == old_hash_time isn't false.
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 54 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
  1. Failure: stashing works (@test-stash.R#53) 
  2. Failure: stashing works (@test-stash.R#54) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘getting-started.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'getting-started.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘getting-started.Rmd’

--- re-building ‘how-mustashe-works.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'how-mustashe-works.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘how-mustashe-works.Rmd’

SUMMARY: processing the following files failed:
  ‘getting-started.Rmd’ ‘how-mustashe-works.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    libs   5.5Mb
Error(s) in re-building vignettes:
--- re-building ‘MVSPC-Workflow.Rmd’ using rmarkdown
Loading required package: zoo

Attaching package: 'zoo'

The following objects are masked from 'package:base':

    as.Date, as.Date.numeric

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MVSPC-Workflow.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MVSPC-Workflow.Rmd’

SUMMARY: processing the following file failed:
  ‘MVSPC-Workflow.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘How_to_use_mvMORPH.Rmd’ using rmarkdown
Loading required package: phytools
Loading required package: ape
Loading required package: maps
Loading required package: corpcor
Loading required package: subplex
##
## mvMORPH package (1.1.1)
## Multivariate evolutionary models
##
## See the tutorials: browseVignettes("mvMORPH")
##
## To cite package 'mvMORPH': citation("mvMORPH")
##
Done.
Efficient parameterization is not yet implemented for user-defined constraints
Please check the results carefully!!
Efficient parameterization is not yet implemented for user-defined constraints
Please check the results carefully!!
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'How_to_use_mvMORPH.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘How_to_use_mvMORPH.Rmd’

--- re-building ‘tutorial_mvMORPH.Rmd’ using rmarkdown
Done.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tutorial_mvMORPH.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tutorial_mvMORPH.Rmd’

SUMMARY: processing the following files failed:
  ‘How_to_use_mvMORPH.Rmd’ ‘tutorial_mvMORPH.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘mvp.Rmd’ using rmarkdown

Attaching package: 'mvp'

The following object is masked from 'package:base':

    trunc


Attaching package: 'spray'

The following objects are masked from 'package:mvp':

    aderiv, constant, constant<-, homog, is.zero, knight, linear,
    nterms, ooom, product, subs, xyz

The following objects are masked from 'package:base':

    pmax, pmin


Attaching package: 'mpoly'

The following objects are masked from 'package:mvp':

    is.constant, vars

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mvp.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mvp.Rmd’

SUMMARY: processing the following file failed:
  ‘mvp.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘mvQuad-Ex.R’ failed
The error most likely occurred in:

> ### Name: plot (plot.NIGrid)
> ### Title: plots an NIGrid-object
> ### Aliases: 'plot (plot.NIGrid)' plot.NIGrid
> 
> ### ** Examples
> 
> myGrid <- createNIGrid(dim=4, type=c("GHe", "cNC1", "GLe", "oNC1"),
+                        level=c(3,4,5,6))
> plot(myGrid) ## dimension 1-min(3,dim(myGrid)) are plotted
Error in plot.NIGrid(myGrid) : 
  wrong dimensions stated to be plotted (no 'rgl'-package for 3d-plot)
Calls: plot -> plot.NIGrid
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mWaveD.Rmd’ using rmarkdown
Warning: Removed 2469 row(s) containing missing values (geom_path).
Warning: Removed 2469 row(s) containing missing values (geom_path).
Warning: Removed 2469 row(s) containing missing values (geom_path).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mWaveD.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mWaveD.Rmd’

SUMMARY: processing the following file failed:
  ‘mWaveD.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘mws-dependencies.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mws-dependencies.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mws-dependencies.Rmd’

--- re-building ‘mws-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mws-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mws-vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘mws-dependencies.Rmd’ ‘mws-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘mmod_tutorial.Rmd’ using rmarkdown
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.0 ──
✔ ggplot2 3.3.0     ✔ purrr   0.3.3
✔ tibble  2.1.3     ✔ dplyr   0.8.5
✔ tidyr   1.0.2     ✔ stringr 1.4.0
✔ readr   1.3.1     ✔ forcats 0.5.0
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag()    masks stats::lag()
OpenMx may run faster if it is compiled to take advantage of multiple cores.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mmod_tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mmod_tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘mmod_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   2.0Mb
    doc    2.5Mb
Running ‘testthat.R’ [63s/138s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Backtrace:
   1. testthat::expect_null(render(nacho_object = GSE74821, clean = FALSE))
   4. NACHO::render(nacho_object = GSE74821, clean = FALSE)
   5. rmarkdown::render(...)
   6. rmarkdown:::convert(output_file, run_citeproc)
   7. rmarkdown::pandoc_convert(...)
  
  ══ testthat results  ═════════════════════════════════════════════════════════════════════════════════════════
  [ OK: 202 | SKIPPED: 0 | WARNINGS: 40 | FAILED: 3 ]
  1. Error: Default parameters (@test-render.R#3) 
  2. Error: with legend (@test-render.R#11) 
  3. Error: with Rmd (@test-render.R#19) 
  
  Error: testthat unit tests failed
  Execution halted
Running ‘testthat.R’ [4s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
   2. rmarkdown:::convert(output_file, run_citeproc)
   3. rmarkdown::pandoc_convert(...)
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 15 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ]
  1. Error: unname_all_chunks works in case is.null(chunk_name_prefix) == TRUE (@test-unname_all_chunks.R#24) 
  2. Failure: unname_all_chunks works in case is.null(chunk_name_prefix) == FALSE (@test-unname_all_chunks.R#53) 
  3. Error: unname_all_chunks works in case is.null(chunk_name_prefix) == FALSE (@test-unname_all_chunks.R#56) 
  4. Failure: unname_all_chunks works in case chunk_name_prefix == 'setup'  (@test-unname_all_chunks.R#85) 
  5. Failure: unname_all_chunks works in case chunk_name_prefix == 'setup'  (@test-unname_all_chunks.R#86) 
  6. Failure: unname_all_chunks works in case chunk_name_prefix == 'setup'  (@test-unname_all_chunks.R#87) 
  7. Error: unname_all_chunks works in case chunk_name_prefix == 'setup'  (@test-unname_all_chunks.R#90) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘namer.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'namer.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘namer.Rmd’

SUMMARY: processing the following file failed:
  ‘namer.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    libs   4.5Mb
Error(s) in re-building vignettes:
--- re-building ‘nasapower.Rmd’ using rmarkdown_notangle
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'nasapower.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nasapower.Rmd’

--- re-building ‘nasapower_states_example.Rmd’ using rmarkdown_notangle
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'nasapower_states_example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nasapower_states_example.Rmd’

SUMMARY: processing the following files failed:
  ‘nasapower.Rmd’ ‘nasapower_states_example.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘NBLAST-Clustering.Rmd’ using rmarkdown
Loading required package: rgl
Loading required package: nat
Some nat functions depend on a CMTK installation. See ?cmtk and README.md for details.

Attaching package: 'nat'

The following objects are masked from 'package:base':

    intersect, setdiff, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'NBLAST-Clustering.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘NBLAST-Clustering.Rmd’

SUMMARY: processing the following file failed:
  ‘NBLAST-Clustering.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Installation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Installation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Installation.Rmd’

--- re-building ‘neurons-intro.Rmd’ using rmarkdown
Loading required package: rgl
Registered S3 method overwritten by 'nat':
  method             from
  as.mesh3d.ashape3d rgl 
Some nat functions depend on a CMTK installation. See ?cmtk and README.md for details.

Attaching package: 'nat'

The following objects are masked from 'package:base':

    intersect, setdiff, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'neurons-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘neurons-intro.Rmd’

SUMMARY: processing the following files failed:
  ‘Installation.Rmd’ ‘neurons-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘NBAloveR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'NBAloveR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘NBAloveR.Rmd’

SUMMARY: processing the following file failed:
  ‘NBAloveR.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘sSeq’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘doRUnit.R’ [9s/11s]
Running the tests in ‘tests/doRUnit.R’ failed.
Last 13 lines of output:
  unit testing failed (#test failures: 1, #R errors: 0)
  
  In addition: Warning messages:
  1: In log(fitte) : NaNs produced
  2: In drm.fit(formula, data = data, fit.4pl = fit.4pl, w = outcome.var^(-init.gamma/2),  :
    drm.fit: default ssfct fails, try additional starting functions.  
  3: In drm.fit(formula, data = data, fit.4pl = fit.4pl, w = outcome.var^(-init.gamma/2),  :
    drm.fit: default ssfct fails, try additional starting functions.  
  4: In drm.fit(formula, data = data, fit.4pl = fit.4pl, w = (data[[outcome.coln]])^(-1),  :
    drm.fit: default ssfct fails, try additional starting functions.  
  5: In drm.fit(formula, data = data, fit.4pl = fit.4pl, w = outcome.var^(-init.gamma/2),  :
    drm.fit: default ssfct fails, try additional starting functions.  
  6: In drm.fit(formula, data = data, fit.4pl = fit.4pl, w = outcome.var^(-init.gamma/2),  :
    drm.fit: default ssfct fails, try additional starting functions.  
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ncappc-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ncappc-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ncappc-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘ncappc-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.8Mb
  sub-directories of 1Mb or more:
    libs  10.5Mb
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    data   1.5Mb
    libs   4.2Mb
File ‘NeatMap/libs/NeatMap.so’:
  Found ‘_rand’, possibly from ‘rand’ (C)
    Object: ‘nMDS_R.o’
  Found ‘_srand’, possibly from ‘srand’ (C)
    Object: ‘nMDS_R.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package required but not available: ‘ConsensusClusterPlus’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘neat.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'neat.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘neat.Rmd’

SUMMARY: processing the following file failed:
  ‘neat.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘netCoin.Rmd’ using rmarkdown

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'netCoin.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘netCoin.Rmd’

--- re-building ‘surCoin.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'surCoin.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘surCoin.Rmd’

SUMMARY: processing the following files failed:
  ‘netCoin.Rmd’ ‘surCoin.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘nettest.Rmd’ using rmarkdown

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'nettest.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nettest.Rmd’

SUMMARY: processing the following file failed:
  ‘nettest.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘graphite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘developingNetjack.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'developingNetjack.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘developingNetjack.Rmd’

--- re-building ‘netjackIntro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'netjackIntro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘netjackIntro.Rmd’

SUMMARY: processing the following files failed:
  ‘developingNetjack.Rmd’ ‘netjackIntro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘NLR-Dictionary.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'NLR-Dictionary.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘NLR-Dictionary.Rmd’

--- re-building ‘ProgrammingGuide.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ProgrammingGuide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ProgrammingGuide.Rmd’

SUMMARY: processing the following files failed:
  ‘NLR-Dictionary.Rmd’ ‘ProgrammingGuide.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    libs   3.8Mb
installed size is  8.3Mb
  sub-directories of 1Mb or more:
    doc    1.8Mb
    libs   5.5Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘vignette.Rmd’ using rmarkdown
`stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘basics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'basics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘basics.Rmd’

SUMMARY: processing the following file failed:
  ‘basics.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Installing_Packages_from_Neuroconductor.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Installing_Packages_from_Neuroconductor.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Installing_Packages_from_Neuroconductor.Rmd’

SUMMARY: processing the following file failed:
  ‘Installing_Packages_from_Neuroconductor.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hcp.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'hcp.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘hcp.Rmd’

SUMMARY: processing the following file failed:
  ‘hcp.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘neutraltytestr.Rmd’ using rmarkdown
Warning: Removed 2 rows containing missing values (geom_bar).
Warning: Removed 2 rows containing missing values (geom_bar).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'neutraltytestr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘neutraltytestr.Rmd’

SUMMARY: processing the following file failed:
  ‘neutraltytestr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘usage-newsanchor.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'usage-newsanchor.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘usage-newsanchor.Rmd’

SUMMARY: processing the following file failed:
  ‘usage-newsanchor.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘KEGGgraph’

Packages suggested but not available for checking: 'graphite', 'NFPdata'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introducing_nhanesA.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introducing_nhanesA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introducing_nhanesA.Rmd’

SUMMARY: processing the following file failed:
  ‘Introducing_nhanesA.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘nhstplot.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'nhstplot.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nhstplot.Rmd’

SUMMARY: processing the following file failed:
  ‘nhstplot.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 35.4Mb
  sub-directories of 1Mb or more:
    CppCode        1.2Mb
    R              6.1Mb
    classic-bugs   1.5Mb
    include        5.5Mb
    libs          18.9Mb
    tests          1.6Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘nitrcbot.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'nitrcbot.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nitrcbot.Rmd’

SUMMARY: processing the following file failed:
  ‘nitrcbot.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘geocode.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 127-133 (geocode.Rmd) 
Error: processing vignette 'geocode.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘geocode.Rmd’

SUMMARY: processing the following file failed:
  ‘geocode.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    libs   6.6Mb
installed size is 17.4Mb
  sub-directories of 1Mb or more:
    libs  15.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘getstarted.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'getstarted.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘getstarted.Rmd’

SUMMARY: processing the following file failed:
  ‘getstarted.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated]
  DIRsubrout.c:505:10: warning: explicitly assigning value of variable of type 'integer' (aka 'int') to itself [-Wself-assign]
  hybrid.c:91:12: warning: 'nlopt_minimize' is deprecated [-Wdeprecated-declarations]
  newuoa.c:184:9: warning: 'nlopt_minimize_constrained' is deprecated [-Wdeprecated-declarations]
  newuoa.c:1241:10: warning: 'nlopt_minimize_constrained' is deprecated [-Wdeprecated-declarations]
  general.c:134:38: warning: 'syscall' is deprecated: first deprecated in macOS 10.12 - syscall(2) is unsupported; please switch to a supported interface. For SYS_kdebug_trace use kdebug_signpost(). [-Wdeprecated-declarations]
  ./f77funcs.h:57:14: warning: 'nlopt_minimize_constrained' is deprecated [-Wdeprecated-declarations]
  ./f77funcs.h:96:6: warning: 'nlopt_get_local_search_algorithm' is deprecated [-Wdeprecated-declarations]
  ./f77funcs.h:104:6: warning: 'nlopt_set_local_search_algorithm' is deprecated [-Wdeprecated-declarations]
  ./f77funcs.h:109:13: warning: 'nlopt_get_stochastic_population' is deprecated [-Wdeprecated-declarations]
  ./f77funcs.h:113:6: warning: 'nlopt_set_stochastic_population' is deprecated [-Wdeprecated-declarations]
  testopt.cpp:218:11: warning: 'nlopt_minimize' is deprecated [-Wdeprecated-declarations]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/nloptr.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘using_nlpred.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using_nlpred.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using_nlpred.Rmd’

SUMMARY: processing the following file failed:
  ‘using_nlpred.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘nlraa-AgronJ-paper.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'nlraa-AgronJ-paper.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nlraa-AgronJ-paper.Rmd’

--- re-building ‘nlraa-Oddi-LFMC.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'nlraa-Oddi-LFMC.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nlraa-Oddi-LFMC.Rmd’

--- re-building ‘nlraa.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'nlraa.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nlraa.Rmd’

SUMMARY: processing the following files failed:
  ‘nlraa-AgronJ-paper.Rmd’ ‘nlraa-Oddi-LFMC.Rmd’ ‘nlraa.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘testthat-class.R’ [1s/2s]
  Running ‘testthat-exe1.R’ [1s/1s]
  Running ‘testthat-exe2.R’ [1s/1s]
  Running ‘testthat-exe3.R’ [1s/1s]
  Running ‘testthat-nldoc.R’ [2s/2s]
Running the tests in ‘tests/testthat-nldoc.R’ failed.
Last 13 lines of output:
  ── 1. Error: nldoc (@test-nldoc.R#14)  ─────────────────────────────────────────
  pandoc document conversion failed with error 6
  Backtrace:
   1. nlrx::nldoc(...)
   2. nlrx:::nldoc_write_nldoc(...)
   3. rmarkdown::render(mdfile)
   4. rmarkdown:::convert(output_file, run_citeproc)
   5. rmarkdown::pandoc_convert(...)
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: nldoc (@test-nldoc.R#14) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘nlstimedist.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'nlstimedist.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nlstimedist.Rmd’

SUMMARY: processing the following file failed:
  ‘nlstimedist.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘NMFEM_for_travelers.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'NMFEM_for_travelers.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘NMFEM_for_travelers.Rmd’

SUMMARY: processing the following file failed:
  ‘NMFEM_for_travelers.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘The_Biomarker_Crisis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'The_Biomarker_Crisis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘The_Biomarker_Crisis.Rmd’

--- re-building ‘Using_the_NNTbiomarker_package.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Using_the_NNTbiomarker_package.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Using_the_NNTbiomarker_package.Rmd’

--- re-building ‘debugTools.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'debugTools.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘debugTools.Rmd’

SUMMARY: processing the following files failed:
  ‘The_Biomarker_Crisis.Rmd’ ‘Using_the_NNTbiomarker_package.Rmd’
  ‘debugTools.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘getting_started.Rmd’ using rmarkdown
Loading required package: testthat
Loading required package: curl
Tracing function "form_file" as seen from package "httr"

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'getting_started.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘getting_started.Rmd’

SUMMARY: processing the following file failed:
  ‘getting_started.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘details.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'details.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘details.Rmd’

--- re-building ‘noaastormevents.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'noaastormevents.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘noaastormevents.Rmd’

SUMMARY: processing the following files failed:
  ‘details.Rmd’ ‘noaastormevents.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘noncomplyR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'noncomplyR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘noncomplyR.Rmd’

SUMMARY: processing the following file failed:
  ‘noncomplyR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘nonlinearTseries_quickstart.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'nonlinearTseries_quickstart.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘nonlinearTseries_quickstart.Rmd’

SUMMARY: processing the following file failed:
  ‘nonlinearTseries_quickstart.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘GOFvignette.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: gridExtra
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GOFvignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GOFvignette.Rmd’

SUMMARY: processing the following file failed:
  ‘GOFvignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘parameter-table.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'parameter-table.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘parameter-table.Rmd’

SUMMARY: processing the following file failed:
  ‘parameter-table.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    data   4.8Mb
Packages suggested but not available for checking: 'treeio', 'ggtree'
Package unavailable to check Rd xrefs: ‘treeio’
Error(s) in re-building vignettes:
--- re-building ‘examples.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘examples.Rmd’

--- re-building ‘usage.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'usage.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘usage.Rmd’

SUMMARY: processing the following files failed:
  ‘examples.Rmd’ ‘usage.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘basic_use_nsapi_package.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'basic_use_nsapi_package.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘basic_use_nsapi_package.Rmd’

SUMMARY: processing the following file failed:
  ‘basic_use_nsapi_package.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘downloading_data_nsrr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'downloading_data_nsrr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘downloading_data_nsrr.Rmd’

SUMMARY: processing the following file failed:
  ‘downloading_data_nsrr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘DAPIclassification.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'DAPIclassification.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘DAPIclassification.Rmd’

--- re-building ‘workflow_many.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'workflow_many.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘workflow_many.Rmd’

--- re-building ‘workflow.html.asis’ using asis
--- finished re-building ‘workflow.html.asis’

SUMMARY: processing the following files failed:
  ‘DAPIclassification.Rmd’ ‘workflow_many.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 22.6Mb
  sub-directories of 1Mb or more:
    doc    7.4Mb
    libs  14.8Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘NutrienTrackeR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'NutrienTrackeR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘NutrienTrackeR.Rmd’

SUMMARY: processing the following file failed:
  ‘NutrienTrackeR.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc    3.2Mb
    libs   2.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘vignette-obfuscatoR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette-obfuscatoR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette-obfuscatoR.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette-obfuscatoR.Rmd’

Error: Vignette re-building failed.
Execution halted
File ‘obliclus/libs/obliclus.so’:
  Found ‘_rand’, possibly from ‘rand’ (C)
    Object: ‘random_cluster_C.o’
  Found ‘_srand’, possibly from ‘srand’ (C)
    Object: ‘random_cluster_C.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Observation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Observation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Observation.Rmd’

SUMMARY: processing the following file failed:
  ‘Observation.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘observer-vignette.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'observer-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘observer-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘observer-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘integration_shiny.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'integration_shiny.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘integration_shiny.Rmd’

--- re-building ‘oceanis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'oceanis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘oceanis.Rmd’

SUMMARY: processing the following files failed:
  ‘integration_shiny.Rmd’ ‘oceanis.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘oceanwaves-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'oceanwaves-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘oceanwaves-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘oceanwaves-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 12.2Mb
  sub-directories of 1Mb or more:
    R      2.4Mb
    doc    2.3Mb
    help   2.7Mb
    libs   3.2Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘OCNet.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'OCNet.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘OCNet.Rmd’

SUMMARY: processing the following file failed:
  ‘OCNet.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.9Mb
  sub-directories of 1Mb or more:
    libs   6.5Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘oddsratio.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'oddsratio.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘oddsratio.Rmd’

SUMMARY: processing the following file failed:
  ‘oddsratio.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ODEnetwork.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ODEnetwork.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ODEnetwork.Rmd’

SUMMARY: processing the following file failed:
  ‘ODEnetwork.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ODEsensitivity.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ODEsensitivity.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ODEsensitivity.Rmd’

SUMMARY: processing the following file failed:
  ‘ODEsensitivity.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘oenb.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'oenb.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘oenb.Rmd’

SUMMARY: processing the following file failed:
  ‘oenb.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘OmicsPLS_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'OmicsPLS_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘OmicsPLS_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘OmicsPLS_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘ridge’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
installed size is 36.0Mb
  sub-directories of 1Mb or more:
    libs  34.3Mb
MLparameters: no visible global function definition for ‘optim’
comp.freq: no visible global function definition for ‘x11’
comp.freq: no visible global function definition for ‘par’
Undefined global functions or variables:
  optim par x11
Consider adding
  importFrom("grDevices", "x11")
  importFrom("graphics", "par")
  importFrom("stats", "optim")
to your NAMESPACE file.
Error(s) in re-building vignettes:
  ...
--- re-building ‘onemapsgapi_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'onemapsgapi_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘onemapsgapi_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘onemapsgapi_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘opal-files.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'opal-files.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘opal-files.Rmd’

--- re-building ‘opal-projects.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'opal-projects.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘opal-projects.Rmd’

--- re-building ‘opal-rsession.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'opal-rsession.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘opal-rsession.Rmd’

SUMMARY: processing the following files failed:
  ‘opal-files.Rmd’ ‘opal-projects.Rmd’ ‘opal-rsession.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘opencage.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'opencage.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘opencage.Rmd’

SUMMARY: processing the following file failed:
  ‘opencage.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/OpenCL.Rcheck/00install.out’ for details.
installed size is 74.7Mb
  sub-directories of 1Mb or more:
    libs   64.9Mb
    share   9.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro-opendatatoronto.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro-opendatatoronto.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro-opendatatoronto.Rmd’

SUMMARY: processing the following file failed:
  ‘intro-opendatatoronto.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.9Mb
  sub-directories of 1Mb or more:
    doc    2.2Mb
    libs   6.2Mb
Error(s) in re-building vignettes:
--- re-building ‘openland_vignette.Rmd’ using rmarkdown
trying URL 'https://zenodo.org/record/3685230/files/SaoLourencoBasin.rda?download=1'
Content type 'application/octet-stream' length 5309066 bytes (5.1 MB)
==================================================
downloaded 5.1 MB

Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
Warning: `expand_scale()` is deprecated; use `expansion()` instead.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'openland_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘openland_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘openland_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/OpenMx.Rcheck/00install.out’ for details.
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    doc    2.6Mb
    libs   3.1Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘Warnings_and_Errors.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Warnings_and_Errors.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Warnings_and_Errors.Rmd’

SUMMARY: processing the following file failed:
  ‘Warnings_and_Errors.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    extdata   1.0Mb
    libs      4.2Mb
Packages suggested but not available for checking:
  'gurobi', 'ggtree', 'Rsymphony', 'lpsymphony'
installed size is  7.7Mb
  sub-directories of 1Mb or more:
    libs   6.0Mb
Package unavailable to check Rd xrefs: ‘ggtree’
Error(s) in re-building vignettes:
  ...
--- re-building ‘oppr.Rmd’ using rmarkdown_notangle
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'oppr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘oppr.Rmd’

SUMMARY: processing the following file failed:
  ‘oppr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘optci.Rmd’ using rmarkdown
Loading required package: MASS
Loading required package: ggplot2
This is 'LambertW' version 0.6.4.  Please see the NEWS file and citation("LambertW").

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'optci.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘optci.Rmd’

SUMMARY: processing the following file failed:
  ‘optci.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘org.At.tair.db’
Error(s) in re-building vignettes:
--- re-building ‘index.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'index.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘index.Rmd’

--- re-building ‘presentation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'presentation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘presentation.Rmd’

SUMMARY: processing the following files failed:
  ‘index.Rmd’ ‘presentation.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    extdata   1.8Mb
    libs      2.8Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘optparse.Rrst’ using knitr
sh: +RTS: command not found
Warning in system(command) : error in running command
Error: processing vignette 'optparse.Rrst' failed with diagnostics:
pandoc document conversion failed with error 127
--- failed re-building ‘optparse.Rrst’

SUMMARY: processing the following file failed:
  ‘optparse.Rrst’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘ROracle’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘changelog.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'changelog.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘changelog.Rmd’

--- re-building ‘orderly.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'orderly.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘orderly.Rmd’

--- re-building ‘remote.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'remote.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘remote.Rmd’

SUMMARY: processing the following files failed:
  ‘changelog.Rmd’ ‘orderly.Rmd’ ‘remote.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘IsoGene’
Error(s) in re-building vignettes:
  ...
--- re-building ‘orf_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'orf_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘orf_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘orf_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
File ‘OriGen/libs/OriGen.so’:
  Found ‘__gfortran_st_close’, possibly from ‘close’ (Fortran)
    Object: ‘OriGen.o’
  Found ‘__gfortran_st_open’, possibly from ‘open’ (Fortran)
    Object: ‘OriGen.o’
  Found ‘__gfortran_st_read’, possibly from ‘read’ (Fortran)
    Object: ‘OriGen.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Error(s) in re-building vignettes:
--- re-building ‘localizacionplana.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'localizacionplana.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘localizacionplana.Rmd’

--- re-building ‘planarlocation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'planarlocation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘planarlocation.Rmd’

SUMMARY: processing the following files failed:
  ‘localizacionplana.Rmd’ ‘planarlocation.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ormPlot.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ormPlot.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ormPlot.Rmd’

SUMMARY: processing the following file failed:
  ‘ormPlot.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.3Mb
  sub-directories of 1Mb or more:
    libs   8.0Mb
Error(s) in re-building vignettes:
--- re-building ‘auth.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'auth.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘auth.Rmd’

--- re-building ‘getting_started.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'getting_started.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘getting_started.Rmd’

SUMMARY: processing the following files failed:
  ‘auth.Rmd’ ‘getting_started.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.3Mb
  sub-directories of 1Mb or more:
    doc    3.6Mb
    libs   5.7Mb
Error(s) in re-building vignettes:
--- re-building ‘osm-sf-translation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'osm-sf-translation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘osm-sf-translation.Rmd’

--- re-building ‘osmdata-sc.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'osmdata-sc.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘osmdata-sc.Rmd’

--- re-building ‘osmdata.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'osmdata.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘osmdata.Rmd’

SUMMARY: processing the following files failed:
  ‘osm-sf-translation.Rmd’ ‘osmdata-sc.Rmd’ ‘osmdata.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘osrmr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'osrmr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘osrmr.Rmd’

SUMMARY: processing the following file failed:
  ‘osrmr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘OTclust.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'OTclust.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘OTclust.Rmd’

SUMMARY: processing the following file failed:
  ‘OTclust.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    doc    3.7Mb
    libs   2.1Mb
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/outbreaker.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
--- re-building ‘intro-to-outcomerate.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro-to-outcomerate.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro-to-outcomerate.Rmd’

SUMMARY: processing the following file failed:
  ‘intro-to-outcomerate.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘outRanger.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'outRanger.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘outRanger.Rmd’

SUMMARY: processing the following file failed:
  ‘outRanger.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 11.0Mb
  sub-directories of 1Mb or more:
    libs  10.6Mb
Error(s) in re-building vignettes:
--- re-building ‘OwenQ.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'OwenQ.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘OwenQ.Rmd’

--- re-building ‘Validation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Validation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Validation.Rmd’

SUMMARY: processing the following files failed:
  ‘OwenQ.Rmd’ ‘Validation.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ozmaps.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ozmaps.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ozmaps.Rmd’

SUMMARY: processing the following file failed:
  ‘ozmaps.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘An_Introduction_to_packager.Rmd’ using rmarkdown
* Adding `.Rprofile` to /var/folders/08/nc4f1s3x1jqd9ln5mnvrqzqh0000gp/T//RtmpCqeVjw/myFirstPackage/.gitignore
* Adding `*.tar.gz` to /var/folders/08/nc4f1s3x1jqd9ln5mnvrqzqh0000gp/T//RtmpCqeVjw/myFirstPackage/.gitignore
* Adding `myFirstPackage.Rcheck` to /var/folders/08/nc4f1s3x1jqd9ln5mnvrqzqh0000gp/T//RtmpCqeVjw/myFirstPackage/.gitignore
* Creating `Makefile` from template.
* Adding `Makefile` to `.Rbuildignore`.
* Creating `vignettes`.
* Creating `vignettes/An_Introduction_to_myFirstPackage.Rmd` from template.
* Creating `NEWS.md` from template.
* Creating `README.Rmd` from template.
* Adding `README.Rmd` to `.Rbuildignore`.
* Adding pre-commit hook
* Creating `.travis.yml` from template.
* Adding `.travis.yml` to `.Rbuildignore`.
* Creating `.gitlab-ci.yml` from template.
* Adding `.gitlab-ci.yml` to `.Rbuildignore`.
* Creating `devel.R` from template.
* Adding `devel.R` to `.Rbuildignore`.
- make sure https://gitlab.com/foobar/myFirstPackage exists!
* Creating `R/throw.R` from template.
* Creating `tests/testthat/test-throw.R` from template.
* Creating `tests/runit.R` from template.
* Creating `inst/runit_tests/runit-throw.R` from template.
* Creating `make.R` from template.
* Adding `make.R` to `.Rbuildignore`.
* Creating `log`.
* Adding `log` to `.Rbuildignore`.
Error: processing vignette 'An_Introduction_to_packager.Rmd' failed with diagnostics:
callr subprocess failed: Vignette re-building failed.
--- failed re-building ‘An_Introduction_to_packager.Rmd’

SUMMARY: processing the following file failed:
  ‘An_Introduction_to_packager.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘graph_packing.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘graph_packing.Rmd’

--- re-building ‘intro.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘intro.Rmd’

--- re-building ‘progressive_packing.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 196-217 (progressive_packing.Rmd) 
Error: processing vignette 'progressive_packing.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘progressive_packing.Rmd’

SUMMARY: processing the following file failed:
  ‘progressive_packing.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘genbankr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Accessing_Wikimedia_pageviews.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Accessing_Wikimedia_pageviews.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Accessing_Wikimedia_pageviews.Rmd’

SUMMARY: processing the following file failed:
  ‘Accessing_Wikimedia_pageviews.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘h-block-crossvalidation.Rmd’ using rmarkdown
This is rioja 0.9-21
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.0 ──
✔ ggplot2 3.3.0     ✔ purrr   0.3.3
✔ tibble  2.1.3     ✔ dplyr   0.8.5
✔ tidyr   1.0.2     ✔ stringr 1.4.0
✔ readr   1.3.1     ✔ forcats 0.5.0
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag()    masks stats::lag()
Warning in Merge(object$y, newdata, split = TRUE) :
  Some row names were changed to avoid duplicates.
# A tibble: 1 x 1
   RMSE
  <dbl>
1  1.15
# A tibble: 1 x 1
      h
  <dbl>
1   700
# A tibble: 1 x 1
      h
  <dbl>
1   700
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'h-block-crossvalidation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘h-block-crossvalidation.Rmd’

SUMMARY: processing the following file failed:
  ‘h-block-crossvalidation.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘paleoTS_basics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'paleoTS_basics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘paleoTS_basics.Rmd’

SUMMARY: processing the following file failed:
  ‘paleoTS_basics.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘using_panelmatch.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using_panelmatch.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using_panelmatch.Rmd’

SUMMARY: processing the following file failed:
  ‘using_panelmatch.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘reshape.Rmd’ using rmarkdown
Loading required package: lme4
Loading required package: Matrix

Attaching package: 'panelr'

The following object is masked from 'package:stats':

    filter

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'reshape.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘reshape.Rmd’

--- re-building ‘wbm.Rmd’ using rmarkdown
Loading required package: lme4
Loading required package: Matrix

Attaching package: 'panelr'

The following object is masked from 'package:stats':

    filter

Loading required namespace: geepack
Loading required namespace: clubSandwich
Loading required namespace: car
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'wbm.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘wbm.Rmd’

SUMMARY: processing the following files failed:
  ‘reshape.Rmd’ ‘wbm.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking: 'M3C', 'Zelig'
Package unavailable to check Rd xrefs: ‘irace’
Running ‘run-all.R’ [9s/11s]
Running the tests in ‘tests/run-all.R’ failed.
Last 13 lines of output:
  
  ── 2. Error: convertParamSetToIrace work with vecparam (@test_convertParamSetToI
  For convertParamSetToIrace please install the following packages: irace
  Backtrace:
   1. ParamHelpers::convertParamSetToIrace(ps)
   2. BBmisc::requirePackages(...)
   3. BBmisc::stopf(...)
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 1047 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 2 ]
  1. Error: convertParamSetToIrace uses correct boundaries (@test_convertParamSetToIrace.R#71) 
  2. Error: convertParamSetToIrace work with vecparam (@test_convertParamSetToIrace.R#85) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction-to-parcoords-.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction-to-parcoords-.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction-to-parcoords-.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction-to-parcoords-.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Pareto.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Pareto.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Pareto.Rmd’

SUMMARY: processing the following file failed:
  ‘Pareto.Rmd’

Error: Vignette re-building failed.
Execution halted
File ‘parmigene/libs/parmigene.so’:
  Found ‘_rand_r’, possibly from ‘rand_r’ (C)
    Object: ‘points.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘parmsurvfit_vig.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'parmsurvfit_vig.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘parmsurvfit_vig.Rmd’

SUMMARY: processing the following file failed:
  ‘parmsurvfit_vig.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘parsnip_Intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'parsnip_Intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘parsnip_Intro.Rmd’

SUMMARY: processing the following file failed:
  ‘parsnip_Intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘tests.R’ [7s/8s]
Running the tests in ‘tests/tests.R’ failed.
Last 13 lines of output:
  \begin{tabular}{crrr}
   & \multicolumn{3}{c}{NULL: Random Walk} \\ 
    & \multicolumn{1}{c}{p=0.01} & \multicolumn{1}{c}{p=0.05} & \multicolumn{1}{c}{p=0.10}\\ 
  \hline 
  n=50   &      -4.7  &      -2.9  &      -2.2  \\ 
  n=100   &      -4.7  &      -3.0  &      -2.2  \\ 
  n=250   &      -4.6  &      -3.0  &      -2.2  \\ 
  n=500   &      -4.7  &      -3.2  &      -2.4  \\ 
  n=1000   &      -4.8  &      -3.1  &      -2.4  \\ 
  n=2500   &      -4.8  &      -3.1  &      -2.4  \\ 
  \end{tabular}
  
  
  Error in test_par(TRUE) : ERRORS! 1 tests failed
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘pci_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pci_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pci_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘pci_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘intro.Rmd’ using rmarkdown

Attaching package: 'particles'

The following objects are masked from 'package:stats':

    filter, simulate


Attaching package: 'tidygraph'

The following object is masked from 'package:stats':

    filter

Loading required package: ggplot2
Using `stress` as default layout
Using `stress` as default layout
Using `stress` as default layout
Using `stress` as default layout
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro.Rmd’

SUMMARY: processing the following file failed:
  ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘extending-partition.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'extending-partition.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘extending-partition.Rmd’

--- re-building ‘introduction-to-partition.Rmd’ using rmarkdown
`stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
Warning: Removed 2 rows containing missing values (geom_bar).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction-to-partition.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction-to-partition.Rmd’

SUMMARY: processing the following files failed:
  ‘extending-partition.Rmd’ ‘introduction-to-partition.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘passt.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'passt.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘passt.Rmd’

SUMMARY: processing the following file failed:
  ‘passt.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘patchwork.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'patchwork.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘patchwork.Rmd’

SUMMARY: processing the following file failed:
  ‘patchwork.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'org.Hs.eg.db', 'KEGGREST', 'KEGGgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'jetset', 'Mfuzz'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘tpm.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tpm.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tpm.Rmd’

SUMMARY: processing the following file failed:
  ‘tpm.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'pbdMPI', 'pbdSLAP'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages which this enhances but not available for checking:
  'pbdPROF', 'pbdZMQ'
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/pbdMPI.Rcheck/00install.out’ for details.
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/pbdPROF.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘PBD_ML_demo.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PBD_ML_demo.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PBD_ML_demo.Rmd’

SUMMARY: processing the following file failed:
  ‘PBD_ML_demo.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages which this enhances but not available for checking:
  'pbdZMQ', 'remoter', 'pbdMPI'
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/pbdZMQ.Rcheck/00install.out’ for details.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc        1.3Mb
    examples   1.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘pca3d.rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pca3d.rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pca3d.rmd’

SUMMARY: processing the following file failed:
  ‘pca3d.rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘pcaBootPlot.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pcaBootPlot.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pcaBootPlot.Rmd’

SUMMARY: processing the following file failed:
  ‘pcaBootPlot.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    libs      2.2Mb
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/pcaL1.Rcheck/00install.out’ for details.
installed size is 12.4Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
    libs   7.1Mb
installed size is 99.9Mb
  sub-directories of 1Mb or more:
    doc    2.7Mb
    libs  96.7Mb
installed size is 35.8Mb
  sub-directories of 1Mb or more:
    libs  34.6Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘PCMBaseCpp.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PCMBaseCpp.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PCMBaseCpp.Rmd’

SUMMARY: processing the following file failed:
  ‘PCMBaseCpp.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘PCMBase.Rmd’ using rmarkdown
Failed with error:  'there is no package called 'ggtree''
Quitting from lines 37-53 (PCMBase.Rmd) 
Error: processing vignette 'PCMBase.Rmd' failed with diagnostics:
argument is not interpretable as logical
--- failed re-building ‘PCMBase.Rmd’

--- re-building ‘PCMCreateModel.Rmd’ using rmarkdown
Failed with error:  'there is no package called 'ggtree''
Quitting from lines 37-54 (PCMCreateModel.Rmd) 
Error: processing vignette 'PCMCreateModel.Rmd' failed with diagnostics:
argument is not interpretable as logical
--- failed re-building ‘PCMCreateModel.Rmd’

--- re-building ‘PCMParam.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PCMParam.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PCMParam.Rmd’

--- re-building ‘PCMTracePruning.Rmd’ using rmarkdown
Failed with error:  'there is no package called 'ggtree''
Quitting from lines 37-59 (PCMTracePruning.Rmd) 
Error: processing vignette 'PCMTracePruning.Rmd' failed with diagnostics:
argument is not interpretable as logical
--- failed re-building ‘PCMTracePruning.Rmd’

SUMMARY: processing the following files failed:
  ‘PCMBase.Rmd’ ‘PCMCreateModel.Rmd’ ‘PCMParam.Rmd’
  ‘PCMTracePruning.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘pcode-vignette.Rmd’ using rmarkdown
Loading required package: splines
Loading required package: Matrix

Attaching package: 'fda'

The following object is masked from 'package:graphics':

    matplot


Attaching package: 'pracma'

The following objects are masked from 'package:Matrix':

    expm, lu, tril, triu

The following object is masked from 'package:deSolve':

    rk4

Loading required package: lattice
Loading required package: survival
Loading required package: Formula
Loading required package: ggplot2

Attaching package: 'Hmisc'

The following object is masked from 'package:pracma':

    ceil

The following objects are masked from 'package:base':

    format.pval, units

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pcode-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pcode-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘pcode-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘PCRedux.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PCRedux.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PCRedux.Rmd’

--- re-building ‘SI1.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'SI1.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘SI1.Rmd’

SUMMARY: processing the following files failed:
  ‘PCRedux.Rmd’ ‘SI1.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘qpcr_analysis.Rmd’ using rmarkdown

********************************************************
Note: As of version 1.0.0, cowplot does not change the
  default ggplot2 theme anymore. To recover the previous
  behavior, execute:
  theme_set(theme_cowplot())
********************************************************

`geom_smooth()` using formula 'y ~ x'
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'qpcr_analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘qpcr_analysis.Rmd’

SUMMARY: processing the following file failed:
  ‘qpcr_analysis.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro_to_pdfsearch.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro_to_pdfsearch.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro_to_pdfsearch.Rmd’

SUMMARY: processing the following file failed:
  ‘intro_to_pdfsearch.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘convert_pdf_tables.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'convert_pdf_tables.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘convert_pdf_tables.Rmd’

SUMMARY: processing the following file failed:
  ‘convert_pdf_tables.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 18.6Mb
  sub-directories of 1Mb or more:
    libs    6.5Mb
    share  11.9Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘pds3.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pds3.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pds3.Rmd’

SUMMARY: processing the following file failed:
  ‘pds3.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    libs   6.1Mb
Error(s) in re-building vignettes:
--- re-building ‘depth_ranktests.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'depth_ranktests.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘depth_ranktests.Rmd’

--- re-building ‘wavelet_est_clust.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'wavelet_est_clust.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘wavelet_est_clust.Rmd’

SUMMARY: processing the following files failed:
  ‘depth_ranktests.Rmd’ ‘wavelet_est_clust.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘globaltest’
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   5.1Mb
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    libs   6.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘pensim.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pensim.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pensim.Rmd’

SUMMARY: processing the following file failed:
  ‘pensim.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘my-vignette.Rmd’ using rmarkdown

---------------------
Welcome to dendextend version 1.13.4
Type citation('dendextend') for how to cite the package.

Type browseVignettes(package = 'dendextend') for the package vignette.
The github page is: https://github.com/talgalili/dendextend/

Suggestions and bug-reports can be submitted at: https://github.com/talgalili/dendextend/issues
Or contact: <tal.galili@gmail.com>

	To suppress this message use:  suppressPackageStartupMessages(library(dendextend))
---------------------


Attaching package: 'dendextend'

The following object is masked from 'package:stats':

    cutree

Loading required package: cluster

Attaching package: 'gclus'

The following object is masked from 'package:dendextend':

    order.hclust

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘my-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘my-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/permGPU.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘permutes.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'permutes.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘permutes.Rmd’

SUMMARY: processing the following file failed:
  ‘permutes.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘perturbR-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'perturbR-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘perturbR-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘perturbR-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction_to_PetfindeR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction_to_PetfindeR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction_to_PetfindeR.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_PetfindeR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘pewdata-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pewdata-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pewdata-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘pewdata-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Introduction.Rmd’ using rmarkdown_notangle
Fontconfig error: Cannot load default config file
ERROR: Duplicated records found in prim.key field
ERROR: NULL records found in prim.key field
OK: No duplicated records found in prim.key field
OK: No NULL records found in prim.key field
Fuzzy matching
Phonetic matching
Semantic matching
Fuzzy matching
Phonetic matching
Semantic matching
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Package unavailable to check Rd xrefs: ‘phase1RMD’
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data       2.3Mb
    examples   2.6Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘phenesse_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'phenesse_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘phenesse_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘phenesse_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘phenocamr-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'phenocamr-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘phenocamr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘phenocamr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘getting-started.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'getting-started.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘getting-started.Rmd’

SUMMARY: processing the following file failed:
  ‘getting-started.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    doc       1.5Mb
    extdata   3.1Mb
Error(s) in re-building vignettes:
--- re-building ‘Distances.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Distances.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Distances.Rmd’

--- re-building ‘Information_Theory.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Information_Theory.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Information_Theory.Rmd’

--- re-building ‘Introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction.Rmd’

SUMMARY: processing the following files failed:
  ‘Distances.Rmd’ ‘Information_Theory.Rmd’ ‘Introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘user-guide.Rmd’ using rmarkdown
Loading required package: tibble
News at https://www.r4photobiology.info/
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘user-guide.Rmd’

SUMMARY: processing the following file failed:
  ‘user-guide.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘user-guide.Rmd’ using rmarkdown
Loading required package: photobiology
Loading required package: tibble
News at https://www.r4photobiology.info/
Loading required package: ggplot2
Loading required package: photobiologyWavebands
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘user-guide.Rmd’

SUMMARY: processing the following file failed:
  ‘user-guide.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘userguide1-intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'userguide1-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘userguide1-intro.Rmd’

--- re-building ‘userguide2-radiation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'userguide2-radiation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘userguide2-radiation.Rmd’

--- re-building ‘userguide3-astronomy.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'userguide3-astronomy.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘userguide3-astronomy.Rmd’

SUMMARY: processing the following files failed:
  ‘userguide1-intro.Rmd’ ‘userguide2-radiation.Rmd’
  ‘userguide3-astronomy.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘user-guide.Rmd’ using rmarkdown
Loading required package: tibble
News at https://www.r4photobiology.info/
For news about 'photobiologySensors', please, see http://www.r4photobiology.info/
For on-line documentation see http://docs.r4photobiology.info/photobiologySensors/
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘user-guide.Rmd’

SUMMARY: processing the following file failed:
  ‘user-guide.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘user-guide.Rmd’ using rmarkdown
Loading required package: tibble
News at https://www.r4photobiology.info/

Attaching package: 'lubridate'

The following object is masked from 'package:base':

    date

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘user-guide.Rmd’

SUMMARY: processing the following file failed:
  ‘user-guide.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘photosynthesis-introduction.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: units
udunits system database from /usr/local/share/udunits

Attaching package: 'purrr'

The following object is masked from 'package:magrittr':

    set_names

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'photosynthesis-introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘photosynthesis-introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘photosynthesis-introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  phreeqcpp/transport.cpp:794:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/phreeqc.Rcheck/00install.out’ for details.
installed size is 32.8Mb
  sub-directories of 1Mb or more:
    libs  32.1Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘phybreak_intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'phybreak_intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘phybreak_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘phybreak_intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Advanced_Usage.Rmd’ using rmarkdown
Warning in asMethod(object) :
  trees with unknown order may be unsafe in ape
Warning in asMethod(object) :
  trees with unknown order may be unsafe in ape
Warning in asMethod(object) :
  trees with unknown order may be unsafe in ape
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Advanced_Usage.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Advanced_Usage.Rmd’

--- re-building ‘Basic_Use.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Basic_Use.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Basic_Use.Rmd’

SUMMARY: processing the following files failed:
  ‘Advanced_Usage.Rmd’ ‘Basic_Use.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘binary_models.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'binary_models.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘binary_models.Rmd’

--- re-building ‘intro_to_phylopath.Rmd’ using rmarkdown
Warning: The curvature argument has been deprecated in favour of strength
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro_to_phylopath.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro_to_phylopath.Rmd’

SUMMARY: processing the following files failed:
  ‘binary_models.Rmd’ ‘intro_to_phylopath.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Benchmark.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Benchmark.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Benchmark.Rmd’

--- re-building ‘phyloregion-intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'phyloregion-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘phyloregion-intro.Rmd’

SUMMARY: processing the following files failed:
  ‘Benchmark.Rmd’ ‘phyloregion-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gt_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gt_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gt_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘gt_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Basics.Rmd’ using rmarkdown
Loading required package: ade4

Attaching package: 'phylobase'

The following object is masked from 'package:ape':

    edges

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Basics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Basics.Rmd’

--- re-building ‘Demo_plots.Rmd’ using rmarkdown
Loading required package: ade4

Attaching package: 'phylobase'

The following object is masked from 'package:ape':

    edges

Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Demo_plots.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Demo_plots.Rmd’

SUMMARY: processing the following files failed:
  ‘Basics.Rmd’ ‘Demo_plots.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 11.9Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   9.5Mb
Error(s) in re-building vignettes:
--- re-building ‘benchmarks.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'benchmarks.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘benchmarks.Rmd’

--- re-building ‘pglmm.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pglmm.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pglmm.Rmd’

--- re-building ‘plot-re.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'plot-re.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘plot-re.Rmd’

SUMMARY: processing the following files failed:
  ‘benchmarks.Rmd’ ‘pglmm.Rmd’ ‘plot-re.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    libs   5.1Mb
Error(s) in re-building vignettes:
--- re-building ‘piecewiseSEM.Rmd’ using rmarkdown
Warning in eval(family$initialize) :
  non-integer #successes in a binomial glm!
Loading required package: Matrix

Attaching package: 'lme4'

The following object is masked from 'package:nlme':

    lmList

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'piecewiseSEM.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘piecewiseSEM.Rmd’

SUMMARY: processing the following file failed:
  ‘piecewiseSEM.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘alternatives.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'alternatives.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘alternatives.Rmd’

--- re-building ‘intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro.Rmd’

SUMMARY: processing the following files failed:
  ‘alternatives.Rmd’ ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘pimeta.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pimeta.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pimeta.Rmd’

SUMMARY: processing the following file failed:
  ‘pimeta.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘pinbasicVignette.Rmd’ using rmarkdown
pin_ll(param = NULL, numbuys = NULL, numsells = NULL, factorization = "Lin_Ke")
initial_vals(numbuys = NULL, numsells = NULL, method = "HAC", length = 5,
    num_clust = 5, details = FALSE)
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pinbasicVignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pinbasicVignette.Rmd’

SUMMARY: processing the following file failed:
  ‘pinbasicVignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘pinp.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pinp.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pinp.Rmd’

SUMMARY: processing the following file failed:
  ‘pinp.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘pivotaltrackR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pivotaltrackR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pivotaltrackR.Rmd’

SUMMARY: processing the following file failed:
  ‘pivotaltrackR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘v00-vignettes.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'v00-vignettes.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘v00-vignettes.Rmd’

SUMMARY: processing the following file failed:
  ‘v00-vignettes.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘test-async.R’ [12s/16s]
  Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  ── 1. Error: load_primary_pkgs (@test-metadata-cache.R#191)  ───────────────────
  No metadata available
  Backtrace:
   1. pkgcache:::synchronise(get_private(cmc)$load_primary_pkgs(oneday()))
   2. get_private(cmc)$load_primary_pkgs(oneday())
   3. pkgcache:::cmc__load_primary_pkgs(self, private, max_age)
   4. private$update_replica_rds(alert = FALSE)
   5. pkgcache:::cmc__update_replica_rds(self, private, alert)
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 305 | SKIPPED: 28 | WARNINGS: 2 | FAILED: 1 ]
  1. Error: load_primary_pkgs (@test-metadata-cache.R#191) 
  
  Error: testthat unit tests failed
  Execution halted
Running ‘testthat.R’ [41s/56s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  * pandoc document conversion failed with error 6
  Backtrace:
    1. testthat::expect_warning(...)
   15. pkgdown::build_article("open-graph", pkg = pkg, quiet = TRUE)
   16. pkgdown:::render_rmarkdown(...)
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 400 | SKIPPED: 18 | WARNINGS: 0 | FAILED: 4 ]
  1. Error: can override defaults in _pkgdown.yml (@test-figure.R#16) 
  2. Error: render_rmarkdown copies image files in subdirectories (@test-rmarkdown.R#6) 
  3. Error: opengraph tags are populated on home, reference, and articles (@test-template-content.R#43) 
  4. Error: customized open graph tags are populated on home, reference, and articles (@test-template-content.R#114) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘vignette_pkggraph.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette_pkggraph.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette_pkggraph.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette_pkggraph.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘testthat.R’ [155s/232s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Component "matches": Component "Topic": 137 string mismatches
  Component "matches": Component "Title": Lengths (13041, 13042) differ (string compare on first 13041)
  Component "matches": Component "Title": 135 string mismatches
  Component "matches": Component "Name": Lengths (13041, 13042) differ (string compare on first 13041)
  Component "matches": Component "Name": 137 string mismatches
  Component "matches": Component "ID": Lengths (13041, 13042) differ (string compare on first 13041)
  Component "matches": Component "ID": 323 string mismatches
  ...
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 303 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Failure: shim_question behaves like util::? for searches (@test-help.r#35) 
  
  Error: testthat unit tests failed
  Execution halted
Package required but not available: ‘rggobi’

Depends: includes the non-default packages:
  'RGtk2', 'gWidgetsRGtk2', 'cairoDevice', 'lattice', 'rggobi',
  'ggplot2', 'proto'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘multiplot.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'multiplot.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘multiplot.Rmd’

--- re-building ‘noncompartmental-analysis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'noncompartmental-analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘noncompartmental-analysis.Rmd’

SUMMARY: processing the following files failed:
  ‘multiplot.Rmd’ ‘noncompartmental-analysis.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘pbpk_apap.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pbpk_apap.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pbpk_apap.Rmd’

--- re-building ‘pbtk1cpt.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pbtk1cpt.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pbtk1cpt.Rmd’

SUMMARY: processing the following files failed:
  ‘pbpk_apap.Rmd’ ‘pbtk1cpt.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'BiocStyle', 'BradleyTerryScalable'
Error(s) in re-building vignettes:
--- re-building ‘Overview.Rmd’ using rmarkdown

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Network of items is not strongly connected
Rankings with only 1 item set to `NA`
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Overview.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Overview.Rmd’

SUMMARY: processing the following file failed:
  ‘Overview.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 25.5Mb
  sub-directories of 1Mb or more:
    libs  25.4Mb
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    libs   4.9Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘examples.Rmd’ using rmarkdown
The infinite line meets the circle at two points, but one of them is not on the half-line.
M is on the line
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘examples.Rmd’

SUMMARY: processing the following file failed:
  ‘examples.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc    2.1Mb
    libs   2.5Mb
Error(s) in re-building vignettes:
--- re-building ‘Example_dataset_creation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Example_dataset_creation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Example_dataset_creation.Rmd’

--- re-building ‘Using_plantecowrap.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Using_plantecowrap.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Using_plantecowrap.Rmd’

SUMMARY: processing the following files failed:
  ‘Example_dataset_creation.Rmd’ ‘Using_plantecowrap.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘plater-basics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'plater-basics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘plater-basics.Rmd’

SUMMARY: processing the following file failed:
  ‘plater-basics.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘PLmixed_intro.Rmd’ using rmarkdown
Loading required package: sm
Package 'sm', version 2.2-5.6: type help(sm) for summary information
Loading required package: ltm
Loading required package: MASS

Attaching package: 'MASS'

The following object is masked from 'package:sm':

    muscle

Loading required package: msm
Loading required package: polycor
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PLmixed_intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PLmixed_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘PLmixed_intro.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.4Mb
  sub-directories of 1Mb or more:
    doc    1.6Mb
    libs   7.9Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘using_plotdap.Rmd’ using rmarkdown
grid object contains more than 50000 pixels
increase `maxpixels` for a finer resolution
grid object contains more than 10000 pixels
increase `maxpixels` for a finer resolution
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using_plotdap.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using_plotdap.Rmd’

SUMMARY: processing the following file failed:
  ‘using_plotdap.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘plotluck.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'plotluck.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘plotluck.Rmd’

SUMMARY: processing the following file failed:
  ‘plotluck.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    htmlwidgets   3.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘examples.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘examples.Rmd’

SUMMARY: processing the following file failed:
  ‘examples.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘plotrr-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'plotrr-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘plotrr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘plotrr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘plsmselect.Rmd’ using rmarkdown
Fitting a lasso and gam loop ... 

Fitting a lasso and gam loop ... 

Fitting a lasso and gam loop ... 

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'plsmselect.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘plsmselect.Rmd’

SUMMARY: processing the following file failed:
  ‘plsmselect.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘testthat.R’ [9s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
    Expected in: /usr/lib/libSystem.B.dylib
  
  <simpleError: pandoc document conversion failed with error 6>
  ── 1. Error: Includes work (@test-include.R#25)  ───────────────────────────────
  is.character(act$val) is not TRUE
  Backtrace:
   1. testthat::expect_match(val$body, "<html.*<h2>R Output</h2>.*</html>\\s*$")
   2. base::stopifnot(is.character(act$val))
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 514 | SKIPPED: 11 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: Includes work (@test-include.R#25) 
  
  Error: testthat unit tests failed
  Execution halted
Package suggested but not available for checking: ‘enviGCMS’
Running examples in ‘pmd-Ex.R’ failed
The error most likely occurred in:

> ### Name: getreact
> ### Title: Get quantitative paired peaks list for specific reaction/pmd
> ### Aliases: getreact
> 
> ### ** Examples
> 
> data(spmeinvivo)
> pmd <- getreact(spmeinvivo,pmd=15.99)
Error in loadNamespace(name) : there is no package called ‘enviGCMS’
Calls: getreact ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘globalstd.Rmd’ using rmarkdown
Quitting from lines 130-134 (globalstd.Rmd) 
Error: processing vignette 'globalstd.Rmd' failed with diagnostics:
there is no package called 'enviGCMS'
--- failed re-building ‘globalstd.Rmd’

SUMMARY: processing the following file failed:
  ‘globalstd.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘PML.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PML.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PML.Rmd’

SUMMARY: processing the following file failed:
  ‘PML.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘GDP.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GDP.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GDP.Rmd’

--- re-building ‘Precipitation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Precipitation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Precipitation.Rmd’

--- re-building ‘Tutorial.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Tutorial.Rmd’

SUMMARY: processing the following files failed:
  ‘GDP.Rmd’ ‘Precipitation.Rmd’ ‘Tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘pointRes_functionality.Rmd’ using rmarkdown
Loading required package: ggplot2
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pointRes_functionality.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pointRes_functionality.Rmd’

SUMMARY: processing the following file failed:
  ‘pointRes_functionality.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘politeness.Rmd’ using rmarkdown
politeness v0.5.1 successfully loaded. See ?politeness for help.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'politeness.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘politeness.Rmd’

SUMMARY: processing the following file failed:
  ‘politeness.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘gdd.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gdd.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gdd.Rmd’

--- re-building ‘intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro.Rmd’

SUMMARY: processing the following files failed:
  ‘gdd.Rmd’ ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘crosstab3way.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'crosstab3way.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘crosstab3way.Rmd’

--- re-building ‘crosstabs.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'crosstabs.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘crosstabs.Rmd’

--- re-building ‘toplines.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'toplines.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘toplines.Rmd’

SUMMARY: processing the following files failed:
  ‘crosstab3way.Rmd’ ‘crosstabs.Rmd’ ‘toplines.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘examples.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Parsed with column specification:
cols(
  Favorable = col_double(),
  Unfavorable = col_double(),
  Undecided = col_double(),
  poll_slug = col_character(),
  survey_house = col_character(),
  start_date = col_date(format = ""),
  end_date = col_date(format = ""),
  question_text = col_character(),
  sample_subpopulation = col_character(),
  observations = col_double(),
  margin_of_error = col_double(),
  mode = col_character(),
  partisanship = col_character(),
  partisan_affiliation = col_character()
)
Parsed with column specification:
cols(
  label = col_character(),
  date = col_date(format = ""),
  value = col_double(),
  low = col_logical(),
  high = col_logical()
)
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘examples.Rmd’

SUMMARY: processing the following file failed:
  ‘examples.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘OpenCPU.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'OpenCPU.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘OpenCPU.Rmd’

--- re-building ‘vignette.Rmd’ using rmarkdown
... activating corpus: GERMAPARLMINI
... activating corpus: REUTERS
... get encoding: latin1
... get cpos and strucs
... get encoding: latin1
... get cpos and strucs
... get encoding: latin1
... get cpos and strucs
... get encoding: latin1
... get cpos and strucs
... getting counts for p-attribute(s): word
... get encoding: latin1
... get cpos and strucs
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘OpenCPU.Rmd’ ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Vignette_polymapR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Vignette_polymapR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Vignette_polymapR.Rmd’

SUMMARY: processing the following file failed:
  ‘Vignette_polymapR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘POMDP.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'POMDP.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘POMDP.Rmd’

SUMMARY: processing the following file failed:
  ‘POMDP.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Three_node_exmaple.Rmd’ using rmarkdown
Loading required package: reshape2
Warning: Removed 450 row(s) containing missing values (geom_path).
Warning: Removed 15000 row(s) containing missing values (geom_path).
Warning: Removed 675 row(s) containing missing values (geom_path).
Warning: Removed 450 row(s) containing missing values (geom_path).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Three_node_exmaple.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Three_node_exmaple.Rmd’

SUMMARY: processing the following file failed:
  ‘Three_node_exmaple.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘popdemo.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'popdemo.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘popdemo.Rmd’

SUMMARY: processing the following file failed:
  ‘popdemo.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘sir.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sir.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sir.Rmd’

--- re-building ‘survtab_examples.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'survtab_examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘survtab_examples.Rmd’

SUMMARY: processing the following files failed:
  ‘sir.Rmd’ ‘survtab_examples.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘popkin.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'popkin.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘popkin.Rmd’

SUMMARY: processing the following file failed:
  ‘popkin.Rmd’

Error: Vignette re-building failed.
Execution halted
Package unavailable to check Rd xrefs: ‘ragt2ridges’
Error(s) in re-building vignettes:
--- re-building ‘portal_researcher_examples.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'portal_researcher_examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘portal_researcher_examples.Rmd’

--- re-building ‘rodent-abundance-demo.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rodent-abundance-demo.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rodent-abundance-demo.Rmd’

SUMMARY: processing the following files failed:
  ‘portal_researcher_examples.Rmd’ ‘rodent-abundance-demo.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘ROI.plugin.symphony’
Package required but not available: ‘Rsymphony’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘posterdown.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'posterdown.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘posterdown.Rmd’

SUMMARY: processing the following file failed:
  ‘posterdown.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘PosteriorBootstrap.Rmd’ using rmarkdown_notangle
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PosteriorBootstrap.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PosteriorBootstrap.Rmd’

SUMMARY: processing the following file failed:
  ‘PosteriorBootstrap.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.5Mb
  sub-directories of 1Mb or more:
    libs   7.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘powdR_vignette.Rmd’ using rmarkdown
powdR: Full Pattern Summation of X-Ray Powder Diffraction Data
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'powdR_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘powdR_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘powdR_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    libs   4.3Mb
Error(s) in re-building vignettes:
--- re-building ‘PPforest-vignette.Rmd’ using rmarkdown
Loading required package: PPforest
Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: RColorBrewer
Loading required package: GGally
Loading required package: ggplot2

Attaching package: 'GGally'

The following object is masked from 'package:dplyr':

    nasa

Loading required package: gridExtra

Attaching package: 'gridExtra'

The following object is masked from 'package:dplyr':

    combine

Loading required package: PPtreeViz
Loading required package: partykit
Loading required package: grid
Loading required package: libcoin
Loading required package: mvtnorm
Loading required package: Rcpp
Warning: funs() is soft deprecated as of dplyr 0.8.0
Please use a list of either functions or lambdas: 

  # Simple named list: 
  list(mean = mean, median = median)

  # Auto named with `tibble::lst()`: 
  tibble::lst(mean, median)

  # Using lambdas
  list(~ mean(., trim = .2), ~ median(., na.rm = TRUE))
This warning is displayed once per session.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PPforest-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PPforest-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘PPforest-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ppgmmga.Rmd’ using rmarkdown
Package 'ppgmmga' version 1.2
Package 'mclust' version 5.4.5
Type 'citation("mclust")' for citing this R package in publications.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ppgmmga.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ppgmmga.Rmd’

SUMMARY: processing the following file failed:
  ‘ppgmmga.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘PPQnote.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PPQnote.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PPQnote.Rmd’

--- re-building ‘PPQplan-vignette.Rmd’ using rmarkdown
Fontconfig error: Cannot load default config file
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PPQplan-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PPQplan-vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘PPQnote.Rmd’ ‘PPQplan-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.3Mb
  sub-directories of 1Mb or more:
    libs   7.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction_to_prcr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction_to_prcr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction_to_prcr.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction_to_prcr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘predict3d.Rmd’ using rmarkdown
Loading required package: predict3d
Loading required package: rgl
Loading required package: TH.data
Loading required package: survival
Loading required package: MASS

Attaching package: 'TH.data'

The following object is masked from 'package:MASS':

    geyser

Warning in eval(family$initialize) :
  non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a binomial glm!
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'predict3d.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘predict3d.Rmd’

SUMMARY: processing the following file failed:
  ‘predict3d.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Predict-race-of-surname.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Predict-race-of-surname.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Predict-race-of-surname.Rmd’

SUMMARY: processing the following file failed:
  ‘Predict-race-of-surname.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 17.1Mb
  sub-directories of 1Mb or more:
    libs  16.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro_prevR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro_prevR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro_prevR.Rmd’

SUMMARY: processing the following file failed:
  ‘intro_prevR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘prevtoinc_vignette.Rmd’ using rmarkdown
Loading required package: prevtoinc
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'prevtoinc_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘prevtoinc_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘prevtoinc_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘getting_started_with_prewas.Rmd’ using rmarkdown
Warning in subset_tree_and_matrix(tree, dna_mat) :
  These samples were dropped from the matrix: t1
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'getting_started_with_prewas.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘getting_started_with_prewas.Rmd’

SUMMARY: processing the following file failed:
  ‘getting_started_with_prewas.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘printr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'printr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘printr.Rmd’

SUMMARY: processing the following file failed:
  ‘printr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘priorcd.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'priorcd.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘priorcd.Rmd’

SUMMARY: processing the following file failed:
  ‘priorcd.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'velox', 'gurobi', 'lpsymphony', 'Rsymphony'
installed size is 11.6Mb
  sub-directories of 1Mb or more:
    doc    1.2Mb
    libs   8.4Mb
Error(s) in re-building vignettes:
--- re-building ‘prioritylasso_vignette.Rmd’ using rmarkdown
Type 'citation("pROC")' for a citation.

Attaching package: 'pROC'

The following objects are masked from 'package:stats':

    cov, smooth, var

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'prioritylasso_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘prioritylasso_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘prioritylasso_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘PRISMA.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PRISMA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PRISMA.Rmd’

--- re-building ‘exclusionflowcharts.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'exclusionflowcharts.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘exclusionflowcharts.Rmd’

SUMMARY: processing the following files failed:
  ‘PRISMA.Rmd’ ‘exclusionflowcharts.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘prism.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'prism.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘prism.Rmd’

SUMMARY: processing the following file failed:
  ‘prism.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘equivocal-zones.Rmd’ using rmarkdown

Attaching package: 'probably'

The following objects are masked from 'package:base':

    as.factor, as.ordered


Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'equivocal-zones.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘equivocal-zones.Rmd’

--- re-building ‘where-to-use.Rmd’ using rmarkdown

Attaching package: 'probably'

The following objects are masked from 'package:base':

    as.factor, as.ordered


Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: tidyr
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'where-to-use.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘where-to-use.Rmd’

SUMMARY: processing the following files failed:
  ‘equivocal-zones.Rmd’ ‘where-to-use.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 21.7Mb
  sub-directories of 1Mb or more:
    libs  21.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘processcheckr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'processcheckr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘processcheckr.Rmd’

SUMMARY: processing the following file failed:
  ‘processcheckr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘processmapr.rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'processmapr.rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘processmapr.rmd’

SUMMARY: processing the following file failed:
  ‘processmapr.rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘processmonitR.rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'processmonitR.rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘processmonitR.rmd’

SUMMARY: processing the following file failed:
  ‘processmonitR.rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘processR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'processR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘processR.Rmd’

SUMMARY: processing the following file failed:
  ‘processR.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘testthat.R’ [37s/56s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 8640 | SKIPPED: 12 | WARNINGS: 72 | FAILED: 11 ]
  1. Error: Ggroc screenshot looks normal (@test-ggroc.R#9) 
  2. Error: Ggroc list screenshot looks normal (@test-ggroc.R#16) 
  3. Error: Ggroc list can take multiple aes (@test-ggroc.R#23) 
  4. Error: Ggroc list extra aestetics screenshot looks normal (@test-ggroc.R#30) 
  5. Error: Ggroc list with group facet screenshot looks normal (@test-ggroc.R#39) 
  6. Error: plot draws correctly (@test-plot.R#13) 
  7. Error: legacy.axis works correctly (@test-plot.R#25) 
  8. Error: Advanced screenshot 1 works correctly (@test-plot.R#47) 
  9. Error: Advanced screenshot 3 works correctly (@test-plot.R#89) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘prodigenr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'prodigenr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘prodigenr.Rmd’

SUMMARY: processing the following file failed:
  ‘prodigenr.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 15.4Mb
  sub-directories of 1Mb or more:
    extdata   7.4Mb
    libs      6.9Mb
Packages suggested but not available for checking:
  'qtbase', 'RGtk2', 'cairoDevice', 'gWidgetsRGtk2'
Running ‘run-all.R’ [9s/21s]
Running the tests in ‘tests/run-all.R’ failed.
Last 13 lines of output:
  [1] FALSE
  [1] FALSE
  [1] FALSE
  [1] FALSE
  [1] FALSE
  [1] TRUE
  [1] FALSE
  [1] FALSE
  [1] FALSE
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 852 | SKIPPED: 4 | WARNINGS: 281 | FAILED: 1 ]
  1. Failure: Custom configuration is added to config (@test-add_config.R#12) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘quick_start.Rmd’ using rmarkdown
Loading required package: Rcpp
Loading required package: rlang

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'quick_start.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘quick_start.Rmd’

SUMMARY: processing the following file failed:
  ‘quick_start.Rmd’

Error: Vignette re-building failed.
Execution halted
Package unavailable to check Rd xrefs: ‘prevalence’
Packages suggested but not available for checking: 'ALDEx2', 'SDMTools'
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   1.5Mb
    doc    1.4Mb
    libs   2.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘proPublicaBillsAPIWrapper.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'proPublicaBillsAPIWrapper.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘proPublicaBillsAPIWrapper.Rmd’

SUMMARY: processing the following file failed:
  ‘proPublicaBillsAPIWrapper.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 24.0Mb
  sub-directories of 1Mb or more:
    libs  23.9Mb
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
    libs   3.1Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘gettingstarted.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gettingstarted.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gettingstarted.Rmd’

SUMMARY: processing the following file failed:
  ‘gettingstarted.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introdution_psda.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introdution_psda.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introdution_psda.Rmd’

SUMMARY: processing the following file failed:
  ‘introdution_psda.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘psfmi-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'psfmi-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘psfmi-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘psfmi-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘PSF_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PSF_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PSF_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘PSF_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    libs   7.7Mb
Error(s) in re-building vignettes:
--- re-building ‘vignette.Rmd’ using rmarkdown
Loading required package: mpmi
Loading required package: KernSmooth
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 22.2Mb
  sub-directories of 1Mb or more:
    libs  21.2Mb
Error(s) in re-building vignettes:
--- re-building ‘bayesian.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'bayesian.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘bayesian.Rmd’

--- re-building ‘overview.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'overview.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘overview.Rmd’

SUMMARY: processing the following files failed:
  ‘bayesian.Rmd’ ‘overview.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘illustrationBONDS.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'illustrationBONDS.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘illustrationBONDS.Rmd’

--- re-building ‘illustrationSNP.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'illustrationSNP.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘illustrationSNP.Rmd’

SUMMARY: processing the following files failed:
  ‘illustrationBONDS.Rmd’ ‘illustrationSNP.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction_to_the_ptest_package.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction_to_the_ptest_package.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction_to_the_ptest_package.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_the_ptest_package.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  pinpolyhedronA.cc:594:7: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  pinpolyhedronA.cc:1766:5: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/ptinpoly.Rcheck/00install.out’ for details.
Package required but not available: ‘tweeDEseq’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘ptstem.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ptstem.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ptstem.Rmd’

SUMMARY: processing the following file failed:
  ‘ptstem.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘testthat.R’ [45s/79s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  The following labels will be shortened to ease plotting:
    jurkat_06_100731121305
  Starting to work on MS/MS Peak shape ...
  
  Memory [MB] prior|after|max(diff) : 103.7 | 103.5 | 4302095 (4301991)
  
  Duration: 0 s
  
  ... MS/MS Peak shape  done
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 111 | SKIPPED: 0 | WARNINGS: 27 | FAILED: 1 ]
  1. Error: createReport (@test_computeQC.R#41) 
  
  Error: testthat unit tests failed
  Execution halted
installed size is 40.3Mb
  sub-directories of 1Mb or more:
    libs  39.8Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘pubtatordb.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pubtatordb.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pubtatordb.Rmd’

SUMMARY: processing the following file failed:
  ‘pubtatordb.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 35.9Mb
  sub-directories of 1Mb or more:
    libs  35.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘PUlasso-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'PUlasso-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘PUlasso-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘PUlasso-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
Running examples in ‘pulseTD-Ex.R’ failed
The error most likely occurred in:

> ### Name: estimateExpression
> ### Title: Estimated Expression
> ### Aliases: estimateExpression
> 
> ### ** Examples
> 
> library(TxDb.Hsapiens.UCSC.hg19.knownGene)
Error in library(TxDb.Hsapiens.UCSC.hg19.knownGene) : 
  there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘tutorial.Rmd’ using rmarkdown
Quitting from lines 63-65 (tutorial.Rmd) 
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
there is no package called 'TxDb.Hsapiens.UCSC.hg19.knownGene'
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘pvaluefun.Rmd’ using rmarkdown
Fontconfig error: Cannot load default config file
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pvaluefun.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pvaluefun.Rmd’

SUMMARY: processing the following file failed:
  ‘pvaluefun.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘pxweb.Rmd’ using rmarkdown
pxweb: R tools for PX-WEB API.
Copyright (C) 2014-2018 Mans Magnusson, Leo Lahti et al.
https://github.com/ropengov/pxweb

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pxweb.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pxweb.Rmd’

SUMMARY: processing the following file failed:
  ‘pxweb.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘pysd2r.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'pysd2r.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘pysd2r.Rmd’

SUMMARY: processing the following file failed:
  ‘pysd2r.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    gui          1.6Mb
    staticdocs   3.3Mb
Package suggested but not available for checking: ‘sbrl’
Running examples in ‘qCBA-Ex.R’ failed
The error most likely occurred in:

> ### Name: sbrlModel2arcCBARuleModel
> ### Title: sbrlModel2arcCBARuleModel Converts a model created by 'sbrl' so
> ###   that it can be passed to qCBA
> ### Aliases: sbrlModel2arcCBARuleModel
> 
> ### ** Examples
> 
> if (! requireNamespace("rCBA", quietly = TRUE)) {
+   message("Please install rCBA to allow for sbrl model conversion")
+   return()
+ } else
+ {
+   library(rCBA)
+ }
> if (! requireNamespace("sbrl", quietly = TRUE)) {
+   message("Please install sbrl to allow for postprocessing of sbrl models")
+   return()
+ } else
+ {
+   library(sbrl)
+ }
Please install sbrl to allow for postprocessing of sbrl models
Error: no function to return from, jumping to top level
Execution halted
Running ‘testthat.R’ [16s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 201 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 17 ]
  1. Failure: cm_2long gives the desired output for ranges (@test-cm_2long.R#31) 
  2. Failure: cm_2long gives the desired output for ranges (@test-cm_2long.R#32) 
  3. Failure: cm_2long gives the desired output for time spans (@test-cm_2long.R#110) 
  4. Failure: cm_2long gives the desired output for time spans (@test-cm_2long.R#111) 
  5. Failure: cm_code.blank, gives the desired output (@test-cm_code.blank.R#31) 
  6. Failure: cm_code.blank, gives the desired output (@test-cm_code.blank.R#50) 
  7. Failure: cm_code.blank, gives the desired output (@test-cm_code.blank.R#66) 
  8. Failure: cm_code.blank, gives the desired output (@test-cm_code.blank.R#82) 
  9. Failure: colSplit splits columns and column names (@test-colSplit.R#17) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted
Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Component "type": Modes: character, numeric
  Component "type": Attributes: < target is NULL, current is list >
  Component "type": target is character, current is factor
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 122 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 6 ]
  1. Failure: loc_split gived intended output (@test-loc_split.R#60) 
  2. Failure: loc_split gived intended output (@test-loc_split.R#61) 
  3. Failure: loc_split gived intended output (@test-loc_split.R#62) 
  4. Failure: loc_split gived intended output (@test-loc_split.R#63) 
  5. Failure: loc_split gived intended output (@test-loc_split.R#64) 
  6. Failure: loc_split gived intended output (@test-loc_split.R#65) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘ModelingWorkflow.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ModelingWorkflow.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ModelingWorkflow.Rmd’

--- re-building ‘ParallelExecution.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ParallelExecution.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ParallelExecution.Rmd’

SUMMARY: processing the following files failed:
  ‘ModelingWorkflow.Rmd’ ‘ParallelExecution.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘qgam.Rmd’ using rmarkdown
Loading required package: mgcv
Loading required package: nlme
This is mgcv 1.8-31. For overview type 'help("mgcv-package")'.
Loading required package: RhpcBLASctl
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'qgam.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘qgam.Rmd’

SUMMARY: processing the following file failed:
  ‘qgam.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘sendplot’
Package unavailable to check Rd xrefs: ‘sendplot’
Error(s) in re-building vignettes:
--- re-building ‘qicharts2.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'qicharts2.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘qicharts2.Rmd’

SUMMARY: processing the following file failed:
  ‘qicharts2.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘controlcharts.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'controlcharts.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘controlcharts.Rmd’

--- re-building ‘runcharts.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'runcharts.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘runcharts.Rmd’

SUMMARY: processing the following files failed:
  ‘controlcharts.Rmd’ ‘runcharts.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 60.0Mb
  sub-directories of 1Mb or more:
    libs  59.7Mb
installed size is 15.3Mb
  sub-directories of 1Mb or more:
    libs  15.2Mb
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
Loading required package: qqplotr
Loading required package: ggplot2

Attaching package: 'qqplotr'

The following objects are masked from 'package:ggplot2':

    StatQqLine, stat_qq_line

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘qsort-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'qsort-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘qsort-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘qsort-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.9Mb
  sub-directories of 1Mb or more:
    libs   9.8Mb
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/qtbase.Rcheck/00install.out’ for details.
installed size is 21.8Mb
  sub-directories of 1Mb or more:
    libs  21.2Mb
Error(s) in re-building vignettes:
--- re-building ‘bootstrap-cluster.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'bootstrap-cluster.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘bootstrap-cluster.Rmd’

--- re-building ‘d-variate-analysis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'd-variate-analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘d-variate-analysis.Rmd’

--- re-building ‘recla-analysis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'recla-analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘recla-analysis.Rmd’

SUMMARY: processing the following files failed:
  ‘bootstrap-cluster.Rmd’ ‘d-variate-analysis.Rmd’ ‘recla-analysis.Rmd’

Error: Vignette re-building failed.
Execution halted
Errors in running code in vignettes:
when running code in ‘qtlnet.Rnw’
  ...
97   .  .  .  .  1  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   .
98   .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   .
99   1  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   .
100  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   .

acyclc> summary(graph.qdg(acyclic.qdg))

  When sourcing ‘qtlnet.R’:
Error: Some vertex names in edge list are not listed in vertex data frame
Execution halted

  ‘qtlnet.Rnw’... failed
installed size is 11.2Mb
  sub-directories of 1Mb or more:
    R         1.7Mb
    contrib   3.7Mb
    doc       3.0Mb
    libs      1.3Mb
Error(s) in re-building vignettes:
--- re-building ‘Qtools.Rmd’ using rmarkdown
Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Qtools.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Qtools.Rmd’

SUMMARY: processing the following file failed:
  ‘Qtools.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘quadmesh.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'quadmesh.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘quadmesh.Rmd’

--- re-building ‘topography.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'topography.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘topography.Rmd’

SUMMARY: processing the following files failed:
  ‘quadmesh.Rmd’ ‘topography.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    libs   7.5Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘qualmap.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'qualmap.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘qualmap.Rmd’

SUMMARY: processing the following file failed:
  ‘qualmap.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 83-117 (introduction.Rmd) 
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘qualtRics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'qualtRics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘qualtRics.Rmd’

SUMMARY: processing the following file failed:
  ‘qualtRics.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘wilcox1973.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 92-106 (wilcox1973.Rmd) 
Error: processing vignette 'wilcox1973.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘wilcox1973.Rmd’

SUMMARY: processing the following file failed:
  ‘wilcox1973.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 11.1Mb
  sub-directories of 1Mb or more:
    R      1.0Mb
    libs   8.0Mb
Error(s) in re-building vignettes:
--- re-building ‘quickstart.Rmd’ using rmarkdown
Package version: 2.0.1
Parallel computing: 2 of 6 threads used.
See https://quanteda.io for tutorials and examples.

Attaching package: 'quanteda'

The following object is masked from 'package:utils':

    View

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'quickstart.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘quickstart.Rmd’

SUMMARY: processing the following file failed:
  ‘quickstart.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.2Mb
  sub-directories of 1Mb or more:
    data   3.8Mb
    libs   6.1Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘textmodel_performance.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'textmodel_performance.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘textmodel_performance.Rmd’

SUMMARY: processing the following file failed:
  ‘textmodel_performance.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  rf.c:454:1: warning: expression result unused [-Wunused-value]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/quantregForest.Rcheck/00install.out’ for details.
installed size is  9.2Mb
  sub-directories of 1Mb or more:
    data   4.5Mb
    libs   4.0Mb
Error(s) in re-building vignettes:
--- re-building ‘Release.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Release.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Release.Rmd’

--- re-building ‘Use_case.Rmd’ using rmarkdown
Warning: Removed 16 rows containing missing values (geom_point).
Warning: Removed 16 rows containing missing values (geom_point).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Use_case.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Use_case.Rmd’

SUMMARY: processing the following files failed:
  ‘Release.Rmd’ ‘Use_case.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Critical-distances.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Critical-distances.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Critical-distances.Rmd’

--- re-building ‘Tree-distance-metrics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Tree-distance-metrics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Tree-distance-metrics.Rmd’

SUMMARY: processing the following files failed:
  ‘Critical-distances.Rmd’ ‘Tree-distance-metrics.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘recoding_addins.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'recoding_addins.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘recoding_addins.Rmd’

SUMMARY: processing the following file failed:
  ‘recoding_addins.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Howto.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Howto.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Howto.Rmd’

--- re-building ‘MMk_queues.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'MMk_queues.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MMk_queues.Rmd’

SUMMARY: processing the following files failed:
  ‘Howto.Rmd’ ‘MMk_queues.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘iii-plotting.Rmd’ using rmarkdown

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: sp

Attaching package: 'raster'

The following object is masked from 'package:data.table':

    shift

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'iii-plotting.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘iii-plotting.Rmd’

SUMMARY: processing the following file failed:
  ‘iii-plotting.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘quickReg.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'quickReg.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘quickReg.Rmd’

SUMMARY: processing the following file failed:
  ‘quickReg.Rmd’

Error: Vignette re-building failed.
Execution halted
File ‘QUIC/libs/QUIC.so’:
  Found ‘_rand’, possibly from ‘rand’ (C)
    Object: ‘QUIC.o’
  Found ‘_srand’, possibly from ‘srand’ (C)
    Object: ‘QUIC.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘quint.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'quint.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘quint.Rmd’

SUMMARY: processing the following file failed:
  ‘quint.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘quokar.Rmd’ using rmarkdown
Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve


Attaching package: 'dplyr'

The following object is masked from 'package:gridExtra':

    combine

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Smoothing formula not specified. Using: y ~ x
Smoothing formula not specified. Using: y ~ x
Smoothing formula not specified. Using: y ~ x
Smoothing formula not specified. Using: y ~ x
`geom_smooth()` using formula 'y ~ x'
Smoothing formula not specified. Using: y ~ x
Smoothing formula not specified. Using: y ~ x
Smoothing formula not specified. Using: y ~ x
Smoothing formula not specified. Using: y ~ x
Smoothing formula not specified. Using: y ~ x
Smoothing formula not specified. Using: y ~ x
Smoothing formula not specified. Using: y ~ x
Smoothing formula not specified. Using: y ~ x
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'quokar.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘quokar.Rmd’

SUMMARY: processing the following file failed:
  ‘quokar.Rmd’

Error: Vignette re-building failed.
Execution halted
File ‘qVarSel/libs/qVarSel.so’:
  Found ‘_rand’, possibly from ‘rand’ (C)
    Object: ‘qVarSelH.o’
  Found ‘_srand’, possibly from ‘srand’ (C)
    Object: ‘qVarSelH.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘summary-statistics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'summary-statistics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘summary-statistics.Rmd’

SUMMARY: processing the following file failed:
  ‘summary-statistics.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘R2019nCoV-introduction.Rmd’ using rmarkdown
Warning: Use of `world_map$long` is discouraged. Use `long` instead.
Warning: Use of `world_map$lat` is discouraged. Use `lat` instead.
Warning: Use of `world_map$group` is discouraged. Use `group` instead.
Warning: Use of `china_line_data$long` is discouraged. Use `long` instead.
Warning: Use of `china_line_data$lat` is discouraged. Use `lat` instead.
Warning: Use of `china_line_data$group` is discouraged. Use `group` instead.
Warning: Use of `china_data$long` is discouraged. Use `long` instead.
Warning: Use of `china_data$lat` is discouraged. Use `lat` instead.
Warning: Use of `china_data$group` is discouraged. Use `group` instead.
Warning: Use of `china_data$value_factor` is discouraged. Use `value_factor` instead.
Warning: Removed 101 row(s) containing missing values (geom_path).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'R2019nCoV-introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘R2019nCoV-introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘R2019nCoV-introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
'library' or 'require' calls in package code:
  ‘RDCOMClient’ ‘rcom’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    libs   4.6Mb
Running examples in ‘R2SWF-Ex.R’ failed
The error most likely occurred in:

> ### Name: dev2swf
> ### Title: Convert R graphics to SWF using different graphics devices
> ### Aliases: dev2swf
> 
> ### ** Examples
> 
> olddir = setwd(tempdir())
> output1 = dev2swf({
+   for(i in 1:10) plot(runif(20), ylim = c(0, 1))
+ }, dev='png', file.ext='png', output='movie-png.swf')
SWF file created at movie-png.swf
> swf2html(output1)
output at /private/var/folders/08/nc4f1s3x1jqd9ln5mnvrqzqh0000gp/T/RtmpFmPBy7/movie-png.html
> 
> if(capabilities("cairo")) {
+     output2 = dev2swf({
+         for(i in 1:10) plot(runif(20), ylim = c(0, 1))
+     }, dev='svg', file.ext='svg', output='movie-svg.swf')
+ }
Fontconfig error: Cannot load default config file
Error in getNodeSet(svgFile, sprintf("//*[@id='%s']/svg:path", refID))[[1]] : 
  subscript out of bounds
Calls: dev2swf ... file2swf -> <Anonymous> -> lapply -> FUN -> lapply -> FUN
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘vignette_R2ucare.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette_R2ucare.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette_R2ucare.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette_R2ucare.Rmd’

Error: Vignette re-building failed.
Execution halted
Package unavailable to check Rd xrefs: ‘BRugs’
Error(s) in re-building vignettes:
  ...
--- re-building ‘Vignette.Rmd’ using rmarkdown
Warning in roc.default(response, predictors[, 1], ...) :
  'response' has more than two levels. Consider setting 'levels' explicitly or using 'multiclass.roc' instead
Warning in coords.roc(rocobj, "all", ret = c("tp")) :
  The 'transpose' argument to FALSE by default since pROC 1.16. Set transpose = TRUE explicitly to revert to the previous behavior, or transpose = TRUE to silence this warning. Type help(coords_transpose) for additional information.
Warning in coords.roc(rocobj, "all", ret = "fp") :
  The 'transpose' argument to FALSE by default since pROC 1.16. Set transpose = TRUE explicitly to revert to the previous behavior, or transpose = TRUE to silence this warning. Type help(coords_transpose) for additional information.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘Vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘r4ss-intro-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'r4ss-intro-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘r4ss-intro-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘r4ss-intro-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘r511-intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'r511-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘r511-intro.Rmd’

SUMMARY: processing the following file failed:
  ‘r511-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘RAbHIT-vignette.Rmd’ using rmarkdown
Loading required package: ggplot2
RAbHIT version: 0.1.4
Fontconfig error: Cannot load default config file
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RAbHIT-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RAbHIT-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘RAbHIT-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘loosebirdtag.Rmd’ using rmarkdown
Warning in rabi::rs_IDs(total.length, redundancy, alphabet) :
  NOTE: Reed-Solomon codes require the 'alphabet size' (e.g. the number of paint colors you have) to be a prime number. Automatically adjusting to use an alphabet size 7 instead of the entered value of 8.
Warning in rabi::rs_IDs(total.length = 5, redundancy = 2, alphabet = 8) :
  NOTE: Reed-Solomon codes require the 'alphabet size' (e.g. the number of paint colors you have) to be a prime number. Automatically adjusting to use an alphabet size 7 instead of the entered value of 8.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'loosebirdtag.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘loosebirdtag.Rmd’

SUMMARY: processing the following file failed:
  ‘loosebirdtag.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking: 'batchelor', 'destiny'
installed size is  9.7Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
    doc    5.9Mb
    libs   1.2Mb
Error(s) in re-building vignettes:
--- re-building ‘RaceID.Rmd’ using rmarkdown

Attaching package: 'FateID'

The following objects are masked from 'package:RaceID':

    diffexpnb, plotdiffgenesnb

[WARNING] Could not parse YAML metadata at line 1398 column 1: Unexpected '
  '
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RaceID.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RaceID.Rmd’

SUMMARY: processing the following file failed:
  ‘RaceID.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘RADanalysis_intro.Rmd’ using rmarkdown
Warning in plot.xy(xy.coords(x, y), type = type, ...) :
  "border" is not a graphical parameter
Warning in plot.xy(xy.coords(x, y), type = type, ...) :
  "border" is not a graphical parameter
Warning in plot.xy(xy.coords(x, y), type = type, ...) :
  "border" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "border" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "border" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "border" is not a graphical parameter
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RADanalysis_intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RADanalysis_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘RADanalysis_intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘preparingData.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'preparingData.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘preparingData.Rmd’

SUMMARY: processing the following file failed:
  ‘preparingData.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘programming.Rmd’ using rmarkdown
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'programming.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘programming.Rmd’

SUMMARY: processing the following file failed:
  ‘programming.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘TextureAnalysis.Rmd’ using rmarkdown
radiomics: Functions for texture analysis of greyscale images.
Enter ?calc_features to see available texture features.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'TextureAnalysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘TextureAnalysis.Rmd’

SUMMARY: processing the following file failed:
  ‘TextureAnalysis.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
   11. base::sapply(...)
   12. base::lapply(X = X, FUN = FUN, ...)
   13. rmarkdown:::FUN(X[[i]], ...)
   14. rmarkdown:::render_one(...)
   17. rmarkdown::render(...)
   18. rmarkdown:::convert(output_file, run_citeproc)
   19. rmarkdown::pandoc_convert(...)
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 2 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 2 ]
  1. Failure: blogs can be created (@test-blog.R#16) 
  2. Failure: websites can be created (@test-website.R#7) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction_to_radsafer.Rmd’ using rmarkdown
Warning in dk_correct(half_life = 10, time_unit = "y", date1 = "2010-01-01") :
  Date mode only provides precision to the day. Use time_lapse mode if more precision is needed.
Warning in dk_correct(RN_select = "Sr-90", date1 = "2005-01-01", date2 = c("2009-01-01",  :
  Date mode only provides precision to the day. Use time_lapse mode if more precision is needed.
Warning in dk_correct(RN_select = "Cs-137", date1 = "2019-01-01", date2 = c("2009-01-01",  :
  Date mode only provides precision to the day. Use time_lapse mode if more precision is needed.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction_to_radsafer.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction_to_radsafer.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_radsafer.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘multivariate_analysis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'multivariate_analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘multivariate_analysis.Rmd’

--- re-building ‘single_cell_projections.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'single_cell_projections.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘single_cell_projections.Rmd’

SUMMARY: processing the following files failed:
  ‘multivariate_analysis.Rmd’ ‘single_cell_projections.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘KEGGgraph’
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   4.8Mb
Package required but not available: ‘CGHbase’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘ragtop_convertibles_in_r.Rmd’ using rmarkdown
Warning: Removed 39 row(s) containing missing values (geom_path).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ragtop_convertibles_in_r.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ragtop_convertibles_in_r.Rmd’

SUMMARY: processing the following file failed:
  ‘ragtop_convertibles_in_r.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 31.4Mb
  sub-directories of 1Mb or more:
    libs  30.5Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘RAINBOWR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RAINBOWR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RAINBOWR.Rmd’

SUMMARY: processing the following file failed:
  ‘RAINBOWR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ralger.Rmd’ using rmarkdown
Warning in (function (..., deparse.level = 1)  :
  number of rows of result is not a multiple of vector length (arg 2)
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ralger.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ralger.Rmd’

SUMMARY: processing the following file failed:
  ‘ralger.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro-to-altmetric.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro-to-altmetric.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro-to-altmetric.Rmd’

SUMMARY: processing the following file failed:
  ‘intro-to-altmetric.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 11.8Mb
  sub-directories of 1Mb or more:
    api           3.1Mb
    htmlwidgets   7.0Mb
Package required but not available: ‘InterpretMSSpectrum’

Package suggested but not available for checking: ‘xcms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘ramlegacy.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ramlegacy.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ramlegacy.Rmd’

--- re-building ‘tables_description.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tables_description.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tables_description.Rmd’

SUMMARY: processing the following files failed:
  ‘ramlegacy.Rmd’ ‘tables_description.Rmd’

Error: Vignette re-building failed.
Execution halted
Package unavailable to check Rd xrefs: ‘Heatplus’
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    R      1.6Mb
    help   1.2Mb
    libs   4.5Mb
Found the following significant warnings:
  rf.c:460:17: warning: expression result unused [-Wunused-value]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/randomForest.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘randomNames.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'randomNames.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘randomNames.Rmd’

SUMMARY: processing the following file failed:
  ‘randomNames.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘randomsearch.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'randomsearch.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘randomsearch.Rmd’

SUMMARY: processing the following file failed:
  ‘randomsearch.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    libs   6.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘RanglaPunjab.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RanglaPunjab.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RanglaPunjab.Rmd’

SUMMARY: processing the following file failed:
  ‘RanglaPunjab.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘dataFormat.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'dataFormat.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘dataFormat.Rmd’

--- re-building ‘Rankcluster.Rnw’ using Sweave
--- finished re-building ‘Rankcluster.Rnw’

SUMMARY: processing the following file failed:
  ‘dataFormat.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘rapbase-Ex.R’ failed
The error most likely occurred in:

> ### Name: getRapPackages
> ### Title: Get all installed Rapporteket packages
> ### Aliases: getRapPackages
> 
> ### ** Examples
> 
> getRapPackages()
Warning in utils::packageDescription(pkg) :
  DESCRIPTION file of package 'orthoDr' is missing or broken
Error: $ operator is invalid for atomic vectors
Execution halted
installed size is 15.4Mb
  sub-directories of 1Mb or more:
    data   3.6Mb
    doc    1.4Mb
    libs   9.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘raptr.Rmd’ using rmarkdown_notangle
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'raptr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘raptr.Rmd’

SUMMARY: processing the following file failed:
  ‘raptr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘An_Introduction_to_rasciidoc.Rmd’ using rmarkdown
sh: asciidoc: command not found
sh: asciidoc: command not found
sh: asciidoc: command not found
sh: asciidoc: command not found
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'An_Introduction_to_rasciidoc.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘An_Introduction_to_rasciidoc.Rmd’

SUMMARY: processing the following file failed:
  ‘An_Introduction_to_rasciidoc.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘rpanel’
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
Loading required package: Rcpp

Attaching package: 'lubridate'

The following objects are masked from 'package:data.table':

    hour, isoweek, mday, minute, month, quarter, second, wday, week,
    yday, year

The following object is masked from 'package:base':

    date

Loading required package: ggplot2

Attaching package: 'plotly'

The following object is masked from 'package:ggplot2':

    last_plot

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:graphics':

    layout

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 10.2Mb
  sub-directories of 1Mb or more:
    R      2.5Mb
    libs   6.7Mb
Packages suggested but not available for checking:
  'cairoDevice', 'gWidgetsRGtk2', 'rggobi', 'RGtk2', 'RODBC'
Error(s) in re-building vignettes:
--- re-building ‘raustats_introduction.Rmd’ using rmarkdown
Loading required package: readxl
Attaching package: 'raustats'
Navigating to /AUSSTATS/abs@.nsf/DetailsPage/5206.0Dec%202019?OpenDocument
Navigating to /AUSSTATS/abs@.nsf/DetailsPage/5206.0Dec%202019?OpenDocument
Navigating to /AUSSTATS/abs@.nsf/DetailsPage/6401.0Dec%202019?OpenDocument
Navigating to /AUSSTATS/abs@.nsf/DetailsPage/5206.0Dec%202017?OpenDocument
Navigating to /AUSSTATS/abs@.nsf/DetailsPage/5206.0Sep%202017?OpenDocument
Navigating to /AUSSTATS/abs@.nsf/DetailsPage/1270.0.55.001July%202016?OpenDocument
Navigating to /AUSSTATS/abs@.nsf/DetailsPage/5206.0Dec%202019?OpenDocument
Navigating to /AUSSTATS/abs@.nsf/DetailsPage/5625.0Dec%202019?OpenDocument

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'raustats_introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘raustats_introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘raustats_introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 33.9Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs  31.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘rbhl.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rbhl.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rbhl.Rmd’

SUMMARY: processing the following file failed:
  ‘rbhl.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘RBitmoji.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RBitmoji.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RBitmoji.Rmd’

SUMMARY: processing the following file failed:
  ‘RBitmoji.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following notes/warnings:
  Non-staged installation was used
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/Rblpapi.Rcheck/00install.out’ for details.
installed size is 12.0Mb
  sub-directories of 1Mb or more:
    blp    5.9Mb
    libs   5.2Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘rblt.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rblt.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rblt.Rmd’

SUMMARY: processing the following file failed:
  ‘rblt.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘docs.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'docs.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘docs.Rmd’

--- re-building ‘tutorial.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following files failed:
  ‘docs.Rmd’ ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rcarbon.Rmd’ using rmarkdown_notangle
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rcarbon.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rcarbon.Rmd’

SUMMARY: processing the following file failed:
  ‘rcarbon.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rccdates.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rccdates.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rccdates.Rmd’

SUMMARY: processing the following file failed:
  ‘rccdates.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘a_get_started.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'a_get_started.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘a_get_started.Rmd’

--- re-building ‘b_elephant.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'b_elephant.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘b_elephant.Rmd’

--- re-building ‘c_bulk_analysis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'c_bulk_analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘c_bulk_analysis.Rmd’

SUMMARY: processing the following files failed:
  ‘a_get_started.Rmd’ ‘b_elephant.Rmd’ ‘c_bulk_analysis.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 13.9Mb
  sub-directories of 1Mb or more:
    libs  13.5Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘arnova.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'arnova.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘arnova.Rmd’

SUMMARY: processing the following file failed:
  ‘arnova.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘rqubic’

Depends: includes the non-default packages:
  'biclust', 'fabia', 'iBBiG', 'superbiclust', 'BcDiag', 'rqubic',
  'BicARE', 's4vd', 'BiBitR'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘fuzzyrcmdrplugin.Rmd’ using rmarkdown
Quitting from lines 47-48 (fuzzyrcmdrplugin.Rmd) 
Error: processing vignette 'fuzzyrcmdrplugin.Rmd' failed with diagnostics:
Cluster setup failed. 1 worker of 1 failed to connect.
--- failed re-building ‘fuzzyrcmdrplugin.Rmd’

SUMMARY: processing the following file failed:
  ‘fuzzyrcmdrplugin.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘extrafont.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'extrafont.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘extrafont.Rmd’

--- re-building ‘geom-stepribbon.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'geom-stepribbon.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘geom-stepribbon.Rmd’

--- re-building ‘plot-km-requirement.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'plot-km-requirement.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘plot-km-requirement.Rmd’

SUMMARY: processing the following files failed:
  ‘extrafont.Rmd’ ‘geom-stepribbon.Rmd’ ‘plot-km-requirement.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘localizacionplanaRcmdr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'localizacionplanaRcmdr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘localizacionplanaRcmdr.Rmd’

--- re-building ‘planarlocationRcmdr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'planarlocationRcmdr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘planarlocationRcmdr.Rmd’

SUMMARY: processing the following files failed:
  ‘localizacionplanaRcmdr.Rmd’ ‘planarlocationRcmdr.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking: 'ROpenOffice', 'RODBC'
Error(s) in re-building vignettes:
--- re-building ‘additions.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'additions.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘additions.Rmd’

--- re-building ‘adiciones.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'adiciones.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘adiciones.Rmd’

SUMMARY: processing the following files failed:
  ‘additions.Rmd’ ‘adiciones.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘atmospheric_co2.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'atmospheric_co2.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘atmospheric_co2.Rmd’

SUMMARY: processing the following file failed:
  ‘atmospheric_co2.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘cored_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'cored_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘cored_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘cored_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    corpora   7.5Mb
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/Rcplex.Rcheck/00install.out’ for details.
installed size is 19.0Mb
  sub-directories of 1Mb or more:
    libs  17.8Mb
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    include   5.9Mb
    libs      2.1Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘RcppArmadillo-sparseMatrix.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Error: processing vignette 'RcppArmadillo-sparseMatrix.Rmd' failed with diagnostics:
there is no package called 'stringi'
--- failed re-building ‘RcppArmadillo-sparseMatrix.Rmd’

--- re-building ‘RcppArmadillo-intro.Rnw’ using Sweave
--- finished re-building ‘RcppArmadillo-intro.Rnw’

SUMMARY: processing the following file failed:
  ‘RcppArmadillo-sparseMatrix.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  WARNING: shared objects/dynamic libraries with hard-coded temporary installation paths
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RcppClassic.Rcheck/00install.out’ for details.
installed size is 32.8Mb
  sub-directories of 1Mb or more:
    include   7.6Mb
    libs     24.6Mb
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RcppMeCab.Rcheck/00install.out’ for details.
Found the following significant warnings:
  WARNING: shared objects/dynamic libraries with hard-coded temporary installation paths
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RcppMLPACK.Rcheck/00install.out’ for details.
installed size is 40.1Mb
  sub-directories of 1Mb or more:
    include   1.7Mb
    lib      27.7Mb
    libs     10.6Mb
installed size is  9.7Mb
  sub-directories of 1Mb or more:
    include   6.7Mb
    libs      2.6Mb
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    jsonexamples   3.8Mb
    libs           1.7Mb
Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Clearing default rcreds db folder, which was previously set to  '/var/folders/08/nc4f1s3x1jqd9ln5mnvrqzqh0000gp/T//RtmpdaZM5I/.rcreds/db_credential_files' 
  Setting the default rcreds db folder to '/var/folders/08/nc4f1s3x1jqd9ln5mnvrqzqh0000gp/T//RtmpdaZM5I/db/some/sub/folder'
  Setting the default rcreds db folder to '/var/folders/08/nc4f1s3x1jqd9ln5mnvrqzqh0000gp/T//RtmpdaZM5I/db/some/sub/folder/with_slash/'
  Clearing default rcreds  folder, which was previously not set 
  Clearing default rcreds  folder, which was previously not set 
  Setting the default rcreds folder to '/var/folders/08/nc4f1s3x1jqd9ln5mnvrqzqh0000gp/T//RtmpdaZM5I/credentials/some/sub/folder'
  Setting the default rcreds folder to '/var/folders/08/nc4f1s3x1jqd9ln5mnvrqzqh0000gp/T//RtmpdaZM5I/credentials/some/sub/folder/with_slash/'
  Folder does not exist. Creating it. 
  Setting the default rcreds folder to '/var/folders/08/nc4f1s3x1jqd9ln5mnvrqzqh0000gp/T//RtmpdaZM5I/testing/default'
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 121 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 1 ]
  1. Failure: Checking Overwriting Abilities (@test-TODOs.R#54) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘crossref_filters.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'crossref_filters.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘crossref_filters.Rmd’

--- re-building ‘rcrossref.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rcrossref.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rcrossref.Rmd’

SUMMARY: processing the following files failed:
  ‘crossref_filters.Rmd’ ‘rcrossref.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rcrtan-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rcrtan-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rcrtan-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rcrtan-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/rcrypt.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
--- re-building ‘vignette.Rmd’ using rmarkdown
Loading required package: sf
Linking to GEOS 3.7.2, GDAL 2.4.2, PROJ 5.2.0

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

RCzechia: downloading remote dataset.
RCzechia: downloading remote dataset.
udunits system database from /usr/local/share/udunits
RCzechia: downloading remote dataset.
RCzechia: using temporary local dataset.
although coordinates are longitude/latitude, st_intersection assumes that they are planar
RCzechia: using temporary local dataset.
Loading required package: sp

Attaching package: 'raster'

The following object is masked from 'package:dplyr':

    select

RCzechia: downloading remote dataset.
RCzechia: using temporary local dataset.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Rd2roxygen.Rmd’ using rmarkdown
rab(pkg, build = TRUE, build.opts = "--no-manual",
    install = FALSE,
    install.opts = if (build) "" else "--with-keep.source",
    check = FALSE, check.opts = "--as-cran --no-manual",
    remove.check = TRUE, reformat = TRUE, before = NULL,
    ...)
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Rd2roxygen.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Rd2roxygen.Rmd’

SUMMARY: processing the following file failed:
  ‘Rd2roxygen.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘rdf_intro.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rdf_intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rdf_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘rdf_intro.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 13.8Mb
  sub-directories of 1Mb or more:
    libs  12.3Mb
Found the following significant warnings:
  dist.cpp:19:33: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  dist.cpp:65:33: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  dist.cpp:111:36: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/rdist.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘RDota2.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RDota2.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RDota2.Rmd’

SUMMARY: processing the following file failed:
  ‘RDota2.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘GettingStarted.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GettingStarted.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GettingStarted.Rmd’

SUMMARY: processing the following file failed:
  ‘GettingStarted.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘readroper.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'readroper.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘readroper.Rmd’

SUMMARY: processing the following file failed:
  ‘readroper.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘locales.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'locales.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘locales.Rmd’

--- re-building ‘readr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'readr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘readr.Rmd’

SUMMARY: processing the following files failed:
  ‘locales.Rmd’ ‘readr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘readtext_vignette.Rmd’ using rmarkdown
Loading required package: quanteda
Package version: 2.0.1
Parallel computing: 2 of 6 threads used.
See https://quanteda.io for tutorials and examples.

Attaching package: 'quanteda'

The following object is masked from 'package:utils':

    View

Loading required package: stringi
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'readtext_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘readtext_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘readtext_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘testthat.R’ [19s/26s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 496 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 9 ]
  1. Failure: meta reads all classes (@test-meta.R#194) 
  2. Failure: meta sfc different types (@test-meta.R#500) 
  3. Failure: rws_get_sqlite_query works with meta = TRUE and logical (@test-query.R#51) 
  4. Failure: rws_read with meta = FALSE  (@test-read.R#68) 
  5. Failure: sf data frames with single geometry passed back (@test-write.R#560) 
  6. Failure: sf data frames with two geometries and correct one passed back (@test-write.R#582) 
  7. Failure: sf can change sf_column (@test-write.R#604) 
  8. Failure: sf data frames with two geometries and lots of other stuff and correct one passed back (@test-write.R#624) 
  9. Failure: initialized even with no rows of data (@test-write.R#644) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘using-readwritesqlite.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using-readwritesqlite.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using-readwritesqlite.Rmd’

SUMMARY: processing the following file failed:
  ‘using-readwritesqlite.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘cell-and-column-types.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'cell-and-column-types.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘cell-and-column-types.Rmd’

--- re-building ‘sheet-geometry.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sheet-geometry.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sheet-geometry.Rmd’

SUMMARY: processing the following files failed:
  ‘cell-and-column-types.Rmd’ ‘sheet-geometry.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘read-xlsb-workbook.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'read-xlsb-workbook.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘read-xlsb-workbook.Rmd’

SUMMARY: processing the following file failed:
  ‘read-xlsb-workbook.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘recexcavAAR-vignette-1.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 13-17 (recexcavAAR-vignette-1.Rmd) 
Error: processing vignette 'recexcavAAR-vignette-1.Rmd' failed with diagnostics:
These vignettes assume pandoc version 1.13.1; older versions will not work.
--- failed re-building ‘recexcavAAR-vignette-1.Rmd’

--- re-building ‘recexcavAAR-vignette-2.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 13-17 (recexcavAAR-vignette-2.Rmd) 
Error: processing vignette 'recexcavAAR-vignette-2.Rmd' failed with diagnostics:
These vignettes assume pandoc version 1.13.1; older versions will not work.
--- failed re-building ‘recexcavAAR-vignette-2.Rmd’

--- re-building ‘recexcavAAR-vignette-3.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 13-17 (recexcavAAR-vignette-3.Rmd) 
Error: processing vignette 'recexcavAAR-vignette-3.Rmd' failed with diagnostics:
These vignettes assume pandoc version 1.13.1; older versions will not work.
--- failed re-building ‘recexcavAAR-vignette-3.Rmd’

SUMMARY: processing the following files failed:
  ‘recexcavAAR-vignette-1.Rmd’ ‘recexcavAAR-vignette-2.Rmd’
  ‘recexcavAAR-vignette-3.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ReDaMoR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ReDaMoR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ReDaMoR.Rmd’

SUMMARY: processing the following file failed:
  ‘ReDaMoR.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    doc    3.3Mb
    libs   2.7Mb
Error(s) in re-building vignettes:
--- re-building ‘reda-Recur.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'reda-Recur.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘reda-Recur.Rmd’

--- re-building ‘reda-intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'reda-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘reda-intro.Rmd’

--- re-building ‘reda-simulate.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'reda-simulate.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘reda-simulate.Rmd’

SUMMARY: processing the following files failed:
  ‘reda-Recur.Rmd’ ‘reda-intro.Rmd’ ‘reda-simulate.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘api.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'api.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘api.Rmd’

--- re-building ‘export.Rmd’ using rmarkdown
* installing *source* package ‘rcd14465’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rcd14465)
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'export.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘export.Rmd’

SUMMARY: processing the following files failed:
  ‘api.Rmd’ ‘export.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    data   1.7Mb
    libs   4.5Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘redland_overview.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'redland_overview.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘redland_overview.Rmd’

SUMMARY: processing the following file failed:
  ‘redland_overview.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘ref-icar-vignette.Rmd’ using rmarkdown
Loading required package: sp
rgdal: version: 1.4-8, (SVN revision 845)
 Geospatial Data Abstraction Library extensions to R successfully loaded
 Loaded GDAL runtime: GDAL 2.4.2, released 2019/06/28
 Path to GDAL shared files: /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.0/rgdal/gdal
 GDAL binary built with GEOS: FALSE 
 Loaded PROJ.4 runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520]
 Path to PROJ.4 shared files: /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.0/rgdal/proj
 Linking to sp version: 1.4-1 
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ref-icar-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ref-icar-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘ref-icar-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   1.6Mb
    libs   4.1Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘RSCA-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RSCA-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RSCA-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘RSCA-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ReinforcementLearning.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ReinforcementLearning.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ReinforcementLearning.Rmd’

SUMMARY: processing the following file failed:
  ‘ReinforcementLearning.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ReIns.Rmd’ using rmarkdown
Warning in pClas(x, mean(X), var(X), mean((X - mean(X))^3)/sd(X)^3, method = "normal-power") :
  Only estimates for F(x) for values of x larger than or equal to mean + sqrt(variance) are provided.
Warning in pClas(x, mean(X), var(X), mean((X - mean(X))^3)/sd(X)^3, method = "shifted Gamma normal") :
  Only estimates for F(x) for values of x larger than or equal to mean + sqrt(variance) are provided.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ReIns.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ReIns.Rmd’

SUMMARY: processing the following file failed:
  ‘ReIns.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘Rsymphony’

Package which this enhances but not available for checking: ‘Rcplex’
Error(s) in re-building vignettes:
  ...
--- re-building ‘relMixVignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'relMixVignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘relMixVignette.Rmd’

SUMMARY: processing the following file failed:
  ‘relMixVignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘dependencies.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Error: processing vignette 'dependencies.Rmd' failed with diagnostics:
there is no package called 'stringi'
--- failed re-building ‘dependencies.Rmd’

SUMMARY: processing the following file failed:
  ‘dependencies.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘remss.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'remss.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘remss.Rmd’

SUMMARY: processing the following file failed:
  ‘remss.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.7Mb
  sub-directories of 1Mb or more:
    doc    6.5Mb
    libs   2.5Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘rentrez_tutorial.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rentrez_tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rentrez_tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘rentrez_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Repliscope.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Repliscope.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Repliscope.Rmd’

SUMMARY: processing the following file failed:
  ‘Repliscope.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘test-all.R’ [59s/91s]
Running the tests in ‘tests/test-all.R’ failed.
Last 13 lines of output:
  3      readRDS   Saving to repo 2.9943640232  secs
  4      readRDS Whole Cache call 3.0450119972  secs
    objectNames hashElements             hash objSize
  1        file         file b21fec818a7999a6   24104
  2        .FUN         .FUN 7a8f2865ef4bc06d    1256
    functionName         component  elapsedTime units
  1      readRDS           Hashing 0.0008170605  secs
  2      readRDS Loading from repo 0.0004200935  secs
  3      readRDS  Whole Cache call 0.0662450790  secs
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 314 | SKIPPED: 68 | WARNINGS: 2 | FAILED: 1 ]
  1. Error: prepInputs doesn't work (part 3) (@test-postProcess.R#40) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Cache-using-postgresql.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Cache-using-postgresql.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Cache-using-postgresql.Rmd’

--- re-building ‘Intro-to-Cache.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Intro-to-Cache.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Intro-to-Cache.Rmd’

SUMMARY: processing the following files failed:
  ‘Cache-using-postgresql.Rmd’ ‘Intro-to-Cache.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘UsingrerddapXtracto.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'UsingrerddapXtracto.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘UsingrerddapXtracto.Rmd’

SUMMARY: processing the following file failed:
  ‘UsingrerddapXtracto.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    data   3.1Mb
    libs   2.0Mb
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  > library(testthat)
  > library(reshape2)
  > 
  > test_check("reshape2")
  ── 1. Failure: labels are correct when missing combinations dropped/kept (@test-
  `x` not equal to `expected`.
  1/1 mismatches
  [1] 4 - 16 == -12
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 126 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 1 ]
  1. Failure: labels are correct when missing combinations dropped/kept (@test-cast.r#126) 
  
  Error: testthat unit tests failed
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘resources-introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'resources-introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘resources-introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘resources-introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    libs      3.2Mb
    swagger   1.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘RevEcoR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RevEcoR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RevEcoR.Rmd’

SUMMARY: processing the following file failed:
  ‘RevEcoR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘log_parsing.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Error: processing vignette 'log_parsing.Rmd' failed with diagnostics:
there is no package called 'stringi'
--- failed re-building ‘log_parsing.Rmd’

--- re-building ‘url_parsing.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Error: processing vignette 'url_parsing.Rmd' failed with diagnostics:
there is no package called 'stringi'
--- failed re-building ‘url_parsing.Rmd’

SUMMARY: processing the following files failed:
  ‘log_parsing.Rmd’ ‘url_parsing.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘rfacebookstat-authorization.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rfacebookstat-authorization.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rfacebookstat-authorization.Rmd’

--- re-building ‘rfacebookstat-get-statistics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rfacebookstat-get-statistics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rfacebookstat-get-statistics.Rmd’

SUMMARY: processing the following files failed:
  ‘rfacebookstat-authorization.Rmd’ ‘rfacebookstat-get-statistics.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 15.9Mb
  sub-directories of 1Mb or more:
    libs  15.4Mb
installed size is 34.3Mb
  sub-directories of 1Mb or more:
    libs  33.0Mb
Error(s) in re-building vignettes:
--- re-building ‘tutorial.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘basic-usage-example.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'basic-usage-example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘basic-usage-example.Rmd’

SUMMARY: processing the following file failed:
  ‘basic-usage-example.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘RFmerge-RainfallExample-minimal.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.

Attaching package: 'zoo'

The following objects are masked from 'package:base':

    as.Date, as.Date.numeric

Linking to GEOS 3.7.2, GDAL 2.4.2, PROJ 5.2.0
Loading required package: sp
rgdal: version: 1.4-8, (SVN revision 845)
 Geospatial Data Abstraction Library extensions to R successfully loaded
 Loaded GDAL runtime: GDAL 2.4.2, released 2019/06/28
 Path to GDAL shared files: /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.0/rgdal/gdal
 GDAL binary built with GEOS: FALSE 
 Loaded PROJ.4 runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520]
 Path to PROJ.4 shared files: /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.0/rgdal/proj
 Linking to sp version: 1.4-1 
(C) 2019 M. Zambrano-Bigiarini and Oscar M. Baez-Villanueva (GPL >=3 license)
Type 'citation('RFmerge')' to see how to cite this package
Quitting from lines 268-274 (RFmerge-RainfallExample-minimal.Rmd) 
Error: processing vignette 'RFmerge-RainfallExample-minimal.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building ‘RFmerge-RainfallExample-minimal.Rmd’

SUMMARY: processing the following file failed:
  ‘RFmerge-RainfallExample-minimal.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Statistical-functions.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Statistical-functions.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Statistical-functions.Rmd’

--- re-building ‘data-mining.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'data-mining.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘data-mining.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following files failed:
  ‘Statistical-functions.Rmd’ ‘data-mining.Rmd’ ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘rfm-customer-level-data.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following object is masked from 'package:kableExtra':

    group_rows

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rfm-customer-level-data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rfm-customer-level-data.Rmd’

--- re-building ‘rfm-transaction-level-data.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following object is masked from 'package:kableExtra':

    group_rows

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rfm-transaction-level-data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rfm-transaction-level-data.Rmd’

SUMMARY: processing the following files failed:
  ‘rfm-customer-level-data.Rmd’ ‘rfm-transaction-level-data.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rfVarImpOOB-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rfVarImpOOB-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rfVarImpOOB-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rfVarImpOOB-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    data      1.9Mb
    doc       2.2Mb
    extdata   2.7Mb
installed size is 139.2Mb
  sub-directories of 1Mb or more:
    libs      136.3Mb
    pictures    1.3Mb
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/rGEDI.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction_to_rgeolocate.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction_to_rgeolocate.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction_to_rgeolocate.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_rgeolocate.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 21.6Mb
  sub-directories of 1Mb or more:
    libs  20.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘rgexf.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rgexf.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rgexf.Rmd’

SUMMARY: processing the following file failed:
  ‘rgexf.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/rggobi.Rcheck/00install.out’ for details.
prepare_Rd: replacing previous import ‘sf::st_make_valid’ by ‘lwgeom::st_make_valid’ when loading ‘tmap’
Package unavailable to check Rd xrefs: ‘Rsymphony’
installed size is 14.2Mb
  sub-directories of 1Mb or more:
    doc     3.7Mb
    fonts   1.5Mb
    libs    7.1Mb
Error(s) in re-building vignettes:
--- re-building ‘WebGL.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'WebGL.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘WebGL.Rmd’

--- re-building ‘legacyWebGL.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'legacyWebGL.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘legacyWebGL.Rmd’

--- re-building ‘rgl.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rgl.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rgl.Rmd’

SUMMARY: processing the following files failed:
  ‘WebGL.Rmd’ ‘legacyWebGL.Rmd’ ‘rgl.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 33.6Mb
  sub-directories of 1Mb or more:
    R      3.7Mb
    help  10.9Mb
    libs  17.4Mb
Found a ‘configure.in’ file: ‘configure.ac’ has long been preferred.
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro_rhandsontable.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 34-47 (intro_rhandsontable.Rmd) 
Error: processing vignette 'intro_rhandsontable.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘intro_rhandsontable.Rmd’

SUMMARY: processing the following file failed:
  ‘intro_rhandsontable.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from lines 40-46 (introduction.Rmd) 
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
there is no package called 'ggtree'
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/Rhpc.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
--- re-building ‘RHRV-quickstart.Rmd’ using rmarkdown
Loading required package: tcltk
Loading required package: tkrplot
Loading required package: waveslim

waveslim: Wavelet Method for 1/2/3D Signals (version = 1.8.2)

Loading required package: nonlinearTseries

Attaching package: 'nonlinearTseries'

The following object is masked from 'package:grDevices':

    contourLines

Loading required package: lomb
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RHRV-quickstart.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RHRV-quickstart.Rmd’

SUMMARY: processing the following file failed:
  ‘RHRV-quickstart.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘local-debugging.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'local-debugging.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘local-debugging.Rmd’

--- re-building ‘rhub.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rhub.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rhub.Rmd’

SUMMARY: processing the following files failed:
  ‘local-debugging.Rmd’ ‘rhub.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro-to-rhymer.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'intro-to-rhymer.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘intro-to-rhymer.Rmd’

SUMMARY: processing the following file failed:
  ‘intro-to-rhymer.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘ri2_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ri2_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ri2_vignette.Rmd’

--- re-building ‘ri2_vs_ri.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ri2_vs_ri.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ri2_vs_ri.Rmd’

SUMMARY: processing the following files failed:
  ‘ri2_vignette.Rmd’ ‘ri2_vs_ri.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘RIA.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RIA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RIA.Rmd’

SUMMARY: processing the following file failed:
  ‘RIA.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘Ricetl-Ex.R’ failed
The error most likely occurred in:

> ### Name: Ricetl
> ### Title: Data Extraction for People's Republic of China Resident Identity
> ###   Card
> ### Aliases: Ricetl
> 
> ### ** Examples
> 
> 
> library(Ricetl)
> library(gWidgetsRGtk2)
Loading required package: RGtk2
Loading required package: gWidgets
Loading required package: cairoDevice
> Ricetl()

 *** caught segfault ***
address 0x0, cause 'memory not mapped'

Traceback:
 1: .RGtkCall("S_gtk_widget_show", object, PACKAGE = "RGtk2")
 2: method(obj, ...)
 3: getWidget(obj)$Show()
 4: `.visible<-`(`*tmp*`, toolkit, ..., value = value)
 5: `.visible<-`(`*tmp*`, toolkit, ..., value = value)
 6: `visible<-`(`*tmp*`, value = TRUE)
 7: `visible<-`(`*tmp*`, value = TRUE)
 8: Ricetl()
An irrecoverable exception occurred. R is aborting now ...
Error(s) in re-building vignettes:
--- re-building ‘rich_introduction.Rmd’ using rmarkdown

rich version 1.0.1 is loaded
You can access the package vignette by typing vignette('rich_introduction') in the R console

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rich_introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rich_introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘rich_introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘RIdeogram.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RIdeogram.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RIdeogram.Rmd’

SUMMARY: processing the following file failed:
  ‘RIdeogram.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/ridge.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘riem_package.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'riem_package.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘riem_package.Rmd’

SUMMARY: processing the following file failed:
  ‘riem_package.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘iex_stocks_and_market_data.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'iex_stocks_and_market_data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘iex_stocks_and_market_data.Rmd’

SUMMARY: processing the following file failed:
  ‘iex_stocks_and_market_data.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rif_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rif_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rif_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rif_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Rilostat.Rmd’ using rmarkdown
Loading required package: devtools
Loading required package: usethis
Loading required package: plotly
Loading required package: ggplot2

Attaching package: 'plotly'

The following object is masked from 'package:ggplot2':

    last_plot

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:graphics':

    layout

Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: plotrix
Loading required package: stringr
Loading required package: Rilostat
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Rilostat.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Rilostat.Rmd’

SUMMARY: processing the following file failed:
  ‘Rilostat.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespaces in Imports field not imported from:
  ‘httr’ ‘remotes’ ‘rmarkdown’ ‘shiny’
  All declared Imports should be used.
Package unavailable to check Rd xrefs: ‘installr’
Found the following significant warnings:
  WARNING: shared objects/dynamic libraries with hard-coded temporary installation paths
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RInside.Rcheck/00install.out’ for details.
File ‘RInside/libs/RInside.so’:
  Found ‘_srand’, possibly from ‘srand’ (C)
    Object: ‘RInside.o’
File ‘RInside/libs/RInside.so’:
  Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
    ‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
    ‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
    ‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘rio.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rio.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rio.Rmd’

SUMMARY: processing the following file failed:
  ‘rio.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 13.2Mb
  sub-directories of 1Mb or more:
    libs  13.1Mb
installed size is 23.9Mb
  sub-directories of 1Mb or more:
    doc    1.4Mb
    libs  22.3Mb
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    libs   5.7Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘ritis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ritis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ritis.Rmd’

SUMMARY: processing the following file failed:
  ‘ritis.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘RiverLoad-Ex.R’ failed
The error most likely occurred in:

> ### Name: method4
> ### Title: Load estimation with time-weighted concentration method
> ### Aliases: method4
> ### Keywords: univ
> 
> ### ** Examples
> 
> data("flow.data1", "conc.data1")
> union<-db.union(flow.data1, conc.data1)
> met4<-method4(union, 2)
> met4.month<-method4(union, 2, "month")
Error in x[[jj]][iseq] <- vjj : replacement has length zero
Calls: method4 -> [<- -> [<-.data.frame
Execution halted
Note: information on .o files is not available
File ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/rJava.Rcheck/rJava/libs/rJava.so’:
  Found ‘___stderrp’, possibly from ‘stderr’ (C)
  Found ‘___stdoutp’, possibly from ‘stdout’ (C)
File ‘rJava/libs/rJava.so’:
  Found non-API call to R: ‘R_GlobalContext’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package required but not available: ‘chopsticks’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘introduction_to_rkeops.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction_to_rkeops.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction_to_rkeops.Rmd’

--- re-building ‘using_rkeops.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using_rkeops.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using_rkeops.Rmd’

SUMMARY: processing the following files failed:
  ‘introduction_to_rkeops.Rmd’ ‘using_rkeops.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 19.4Mb
  sub-directories of 1Mb or more:
    libs  19.3Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘rKIN_Introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rKIN_Introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rKIN_Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘rKIN_Introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘golubEsets’
Error(s) in re-building vignettes:
  ...
--- re-building ‘Rknots_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Rknots_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Rknots_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘Rknots_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    libs   8.4Mb
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    libs   5.8Mb
installed size is 44.9Mb
  sub-directories of 1Mb or more:
    libs  44.3Mb
Error(s) in re-building vignettes:
--- re-building ‘GT_models.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'GT_models.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘GT_models.Rmd’

--- re-building ‘gettingStarted.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gettingStarted.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gettingStarted.Rmd’

SUMMARY: processing the following files failed:
  ‘GT_models.Rmd’ ‘gettingStarted.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/rLindo.Rcheck/00install.out’ for details.
installed size is 10.5Mb
  sub-directories of 1Mb or more:
    libs  10.3Mb
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    libs   8.9Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘rmapshaper.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rmapshaper.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rmapshaper.Rmd’

SUMMARY: processing the following file failed:
  ‘rmapshaper.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘rmapzen-introduction.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Linking to GEOS 3.7.2, GDAL 2.4.2, PROJ 5.2.0
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rmapzen-introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rmapzen-introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘rmapzen-introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gridded-event-detection.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'gridded-event-detection.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘gridded-event-detection.Rmd’

SUMMARY: processing the following file failed:
  ‘gridded-event-detection.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    rmd   8.2Mb
Found the following significant warnings:
  Warning: Software mark not found in path.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMark.Rcheck/00install.out’ for details.
installed size is 52.1Mb
  sub-directories of 1Mb or more:
    libs  51.4Mb
Error(s) in re-building vignettes:
--- re-building ‘replace_ampersands.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'replace_ampersands.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘replace_ampersands.Rmd’

--- re-building ‘wordcount.Rmd’ using rmarkdown
Warning: Removed 2 rows containing missing values (position_stack).
Warning: Removed 2 rows containing missing values (geom_text).
Warning: Removed 2 rows containing missing values (geom_text).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'wordcount.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘wordcount.Rmd’

SUMMARY: processing the following files failed:
  ‘replace_ampersands.Rmd’ ‘wordcount.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘custom-themes.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'custom-themes.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘custom-themes.Rmd’

SUMMARY: processing the following file failed:
  ‘custom-themes.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RmecabKo.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘rmetalog-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rmetalog-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rmetalog-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rmetalog-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.9Mb
  sub-directories of 1Mb or more:
    R      2.1Mb
    libs   5.8Mb
installed size is 40.4Mb
  sub-directories of 1Mb or more:
    libs  39.5Mb
installed size is 28.5Mb
  sub-directories of 1Mb or more:
    libs  28.4Mb
Error(s) in re-building vignettes:
--- re-building ‘dataFormat.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'dataFormat.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘dataFormat.Rmd’

--- re-building ‘mixtCompObject.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'mixtCompObject.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘mixtCompObject.Rmd’

SUMMARY: processing the following files failed:
  ‘dataFormat.Rmd’ ‘mixtCompObject.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/rMouse.Rcheck/00install.out’ for details.
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/Rmpi.Rcheck/00install.out’ for details.
Package required but not available: ‘splineTimeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘rmtl.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rmtl.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rmtl.Rmd’

SUMMARY: processing the following file failed:
  ‘rmtl.Rmd’

Error: Vignette re-building failed.
Execution halted
Error: package or namespace load failed for ‘RMySQL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMySQL.Rcheck/RMySQL/libs/RMySQL.so':
  dlopen(/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMySQL.Rcheck/RMySQL/libs/RMySQL.so, 6): Symbol not found: _GSS_C_NT_USER_NAME
  Referenced from: /Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMySQL.Rcheck/RMySQL/libs/RMySQL.so
  Expected in: flat namespace
 in /Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMySQL.Rcheck/RMySQL/libs/RMySQL.so
Execution halted
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMySQL.Rcheck/RMySQL/libs/RMySQL.so':
  dlopen(/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMySQL.Rcheck/RMySQL/libs/RMySQL.so, 6): Symbol not found: _GSS_C_NT_USER_NAME
  Referenced from: /Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMySQL.Rcheck/RMySQL/libs/RMySQL.so
  Expected in: flat namespace
 in /Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMySQL.Rcheck/RMySQL/libs/RMySQL.so
Calls: <Anonymous> ... eval -> eval -> loadNamespace -> library.dynam -> dyn.load
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error: package or namespace load failed for ‘RMySQL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMySQL.Rcheck/RMySQL/libs/RMySQL.so':
  dlopen(/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMySQL.Rcheck/RMySQL/libs/RMySQL.so, 6): Symbol not found: _GSS_C_NT_USER_NAME
  Referenced from: /Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMySQL.Rcheck/RMySQL/libs/RMySQL.so
  Expected in: flat namespace
 in /Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RMySQL.Rcheck/RMySQL/libs/RMySQL.so
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘rmytarget-auth.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rmytarget-auth.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rmytarget-auth.Rmd’

--- re-building ‘rmytarget-intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rmytarget-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rmytarget-intro.Rmd’

SUMMARY: processing the following files failed:
  ‘rmytarget-auth.Rmd’ ‘rmytarget-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘RNAseqNet.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RNAseqNet.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RNAseqNet.Rmd’

SUMMARY: processing the following file failed:
  ‘RNAseqNet.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘topGO’
Package unavailable to check Rd xrefs: ‘topGO’
Error(s) in re-building vignettes:
  ...
--- re-building ‘rnassqs.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rnassqs.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rnassqs.Rmd’

SUMMARY: processing the following file failed:
  ‘rnassqs.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rnbp.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rnbp.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rnbp.Rmd’

SUMMARY: processing the following file failed:
  ‘rnbp.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 19.2Mb
  sub-directories of 1Mb or more:
    libs  19.0Mb
Error(s) in re-building vignettes:
--- re-building ‘RNewsflow.Rmd’ using rmarkdown
Package version: 2.0.1
Parallel computing: 2 of 6 threads used.
See https://quanteda.io for tutorials and examples.

Attaching package: 'quanteda'

The following object is masked from 'package:utils':

    View

Loading required package: igraph

Attaching package: 'igraph'

The following object is masked from 'package:quanteda':

    as.igraph

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: tm
Loading required package: NLP

Attaching package: 'NLP'

The following objects are masked from 'package:quanteda':

    meta, meta<-


Attaching package: 'tm'

The following objects are masked from 'package:quanteda':

    as.DocumentTermMatrix, stopwords

Loading required package: Matrix
Dropped 30 rows from dtm that do not have a complete window:
    dtm date range:          2013-05-31 20:33:00 - 2013-06-30 16:48:00
    comparison window range: 2013-05-31 20:33:00 - 2013-06-29 04:48:00
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RNewsflow.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RNewsflow.Rmd’

SUMMARY: processing the following file failed:
  ‘RNewsflow.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    doxygen   1.5Mb
    libs      3.3Mb
installed size is 96.4Mb
  sub-directories of 1Mb or more:
    extdata   2.0Mb
    libs     94.2Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘rNMF.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rNMF.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rNMF.Rmd’

SUMMARY: processing the following file failed:
  ‘rNMF.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'MassSpecWavelet', 'speaq'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘RNOmni.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RNOmni.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RNOmni.Rmd’

SUMMARY: processing the following file failed:
  ‘RNOmni.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rnrfa-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rnrfa-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rnrfa-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rnrfa-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 19.4Mb
  sub-directories of 1Mb or more:
    data   1.3Mb
    libs  17.0Mb
Error(s) in re-building vignettes:
--- re-building ‘robin.Rmd’ using rmarkdown
Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: gprege
Loading required package: gptk
Loading required package: Matrix
Loading required package: fields
Loading required package: spam
Loading required package: dotCall64
Loading required package: grid
Spam version 2.5-1 (2019-12-12) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction 
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.

Attaching package: 'spam'

The following object is masked from 'package:Matrix':

    det

The following objects are masked from 'package:base':

    backsolve, forwardsolve

Loading required package: maps
See https://github.com/NCAR/Fields for
 an extensive vignette, other supplements and source code 
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'robin.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘robin.Rmd’

SUMMARY: processing the following file failed:
  ‘robin.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'affydata', 'hgu95av2cdf', 'beadarrayExampleData',
  'illuminaHumanv3.db'
Error(s) in re-building vignettes:
--- re-building ‘using_robotstxt.Rmd’ using rmarkdown

 google.com                      No encoding supplied: defaulting to UTF-8.



 google.com                      No encoding supplied: defaulting to UTF-8.



Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'using_robotstxt.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘using_robotstxt.Rmd’

SUMMARY: processing the following file failed:
  ‘using_robotstxt.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘robsurvey-vignette.Rmd’ using rmarkdown
Loading required package: grid
Loading required package: Matrix
Loading required package: survival

Attaching package: 'survey'

The following object is masked from 'package:graphics':

    dotchart

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'robsurvey-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘robsurvey-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘robsurvey-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 16.7Mb
  sub-directories of 1Mb or more:
    libs  16.3Mb
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    libs   5.0Mb
installed size is 33.2Mb
  sub-directories of 1Mb or more:
    libs  32.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘lcmv.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'lcmv.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘lcmv.Rmd’

SUMMARY: processing the following file failed:
  ‘lcmv.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction_to_robvis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Introduction_to_robvis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Introduction_to_robvis.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_robvis.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction_to_rock.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction_to_rock.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction_to_rock.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction_to_rock.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘how-to.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'how-to.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘how-to.Rmd’

SUMMARY: processing the following file failed:
  ‘how-to.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘clpAPI’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcplex’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘scrollama-basic.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'scrollama-basic.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘scrollama-basic.Rmd’

--- re-building ‘scrollama-sidebar.Rmd’ using rmarkdown
Warning: MathJax doesn't work with self_contained when not using the rmarkdown "default" template.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'scrollama-sidebar.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘scrollama-sidebar.Rmd’

SUMMARY: processing the following files failed:
  ‘scrollama-basic.Rmd’ ‘scrollama-sidebar.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    libs   5.9Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘roots.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'roots.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘roots.Rmd’

SUMMARY: processing the following file failed:
  ‘roots.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 24.2Mb
  sub-directories of 1Mb or more:
    libs  24.1Mb
sh: cmake: command not found
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
sh: cmake: command not found
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
sh: cmake: command not found
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
sh: cmake: command not found
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
sh: cmake: command not found
sh: cmake: command not found
sh: cmake: command not found
sh: cmake: command not found
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Error(s) in re-building vignettes:
--- re-building ‘install.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'install.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘install.Rmd’

--- re-building ‘usage.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'usage.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘usage.Rmd’

SUMMARY: processing the following files failed:
  ‘install.Rmd’ ‘usage.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ropercenter-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ropercenter-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ropercenter-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘ropercenter-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/ROracle.Rcheck/00install.out’ for details.
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    R      1.1Mb
    data   2.7Mb
    libs   5.1Mb
Error(s) in re-building vignettes:
--- re-building ‘data_mashups.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'data_mashups.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘data_mashups.Rmd’

--- re-building ‘meta-analysis.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'meta-analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘meta-analysis.Rmd’

--- re-building ‘rotl.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rotl.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rotl.Rmd’

SUMMARY: processing the following files failed:
  ‘data_mashups.Rmd’ ‘meta-analysis.Rmd’ ‘rotl.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/rpanel.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
--- re-building ‘Dissertation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Dissertation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Dissertation.Rmd’

--- re-building ‘Dissertation2.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Dissertation2.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Dissertation2.Rmd’

SUMMARY: processing the following files failed:
  ‘Dissertation.Rmd’ ‘Dissertation2.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘codelists.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'codelists.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘codelists.Rmd’

SUMMARY: processing the following file failed:
  ‘codelists.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 21.1Mb
  sub-directories of 1Mb or more:
    libs  20.1Mb
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/rpg.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘NEWS.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘NEWS.Rmd’

--- re-building ‘rpivotTableIntroduction.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 51-53 (rpivotTableIntroduction.Rmd) 
Error: processing vignette 'rpivotTableIntroduction.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘rpivotTableIntroduction.Rmd’

SUMMARY: processing the following file failed:
  ‘rpivotTableIntroduction.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    data   2.3Mb
    libs   4.8Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘Rpolyhedra.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Rpolyhedra.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Rpolyhedra.Rmd’

SUMMARY: processing the following file failed:
  ‘Rpolyhedra.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/Rpoppler.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
--- re-building ‘data-model.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'data-model.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘data-model.Rmd’

--- re-building ‘explorePgtraj.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'explorePgtraj.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘explorePgtraj.Rmd’

--- re-building ‘use-cases.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'use-cases.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘use-cases.Rmd’

SUMMARY: processing the following files failed:
  ‘data-model.Rmd’ ‘explorePgtraj.Rmd’ ‘use-cases.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rpredictit-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rpredictit-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rpredictit-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rpredictit-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction.Rmd’

--- re-building ‘visualization.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'visualization.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘visualization.Rmd’

SUMMARY: processing the following files failed:
  ‘introduction.Rmd’ ‘visualization.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘diagnostics.Rmd’ using rmarkdown
Loading required package: survival
Loading required package: Hmisc
Loading required package: lattice
Loading required package: Formula

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, units

Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve


Attaching package: 'dplyr'

The following objects are masked from 'package:Hmisc':

    src, summarize

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'diagnostics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘diagnostics.Rmd’

--- re-building ‘user_guide.Rmd’ using rmarkdown
Loading required package: survival
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'user_guide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘user_guide.Rmd’

SUMMARY: processing the following files failed:
  ‘diagnostics.Rmd’ ‘user_guide.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(rprojroot)
  > 
  > test_check("rprojroot")
  Error in loadNamespace(name) : there is no package called 'cli'
  Calls: test_check ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
installed size is 36.3Mb
  sub-directories of 1Mb or more:
    libs  34.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘rpsftm_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rpsftm_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rpsftm_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rpsftm_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rptR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rptR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rptR.Rmd’

SUMMARY: processing the following file failed:
  ‘rptR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘RPyGeo.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RPyGeo.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RPyGeo.Rmd’

SUMMARY: processing the following file failed:
  ‘RPyGeo.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘install_guide.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'install_guide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘install_guide.Rmd’

SUMMARY: processing the following file failed:
  ‘install_guide.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 90.7Mb
  sub-directories of 1Mb or more:
    libs  90.1Mb
Running ‘RQuantlib.R’ [1s/1s]
Running the tests in ‘tests/RQuantlib.R’ failed.
Last 13 lines of output:
  +                             settleDate=as.Date('2002-2-15'),
  +                             dt=0.25,
  +                             interpWhat='discount', interpHow='loglinear')
  > discountCurve <- DiscountCurve(discountCurve.param, list(flat=0.05))
  > 
  > ZeroCouponBond(bond, discountCurve, dateparams)
  
   *** caught segfault ***
  address 0x0, cause 'memory not mapped'
  
  Traceback:
   1: ZeroBondWithRebuiltCurve(bond, c(discountCurve$table$date), discountCurve$table$zeroRates,     dateparams)
   2: ZeroCouponBond.default(bond, discountCurve, dateparams)
   3: ZeroCouponBond(bond, discountCurve, dateparams)
  An irrecoverable exception occurred. R is aborting now ...
Error(s) in re-building vignettes:
--- re-building ‘Rraven.Rmd’ using rmarkdown
Loading required package: tuneR
Loading required package: seewave
Loading required package: NatureSounds
Loading required package: knitr

NOTE: functions are being renamed (run 'print(new_function_names)' to see new names). Both old and new names are available in this version 
 Please see citation('warbleR') for use in publication
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Rraven.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Rraven.Rmd’

SUMMARY: processing the following file failed:
  ‘Rraven.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/rrd.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘rrefine-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rrefine-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rrefine-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rrefine-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  rf.c:485:1: warning: expression result unused [-Wunused-value]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RRF.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
--- re-building ‘rromeo.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rromeo.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rromeo.Rmd’

--- re-building ‘setting_up_api_key.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'setting_up_api_key.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘setting_up_api_key.Rmd’

SUMMARY: processing the following files failed:
  ‘rromeo.Rmd’ ‘setting_up_api_key.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘RRreg.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RRreg.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RRreg.Rmd’

--- re-building ‘Heck_Moshagen_2018_JSS.pdf.asis’ using asis
--- finished re-building ‘Heck_Moshagen_2018_JSS.pdf.asis’

SUMMARY: processing the following file failed:
  ‘RRreg.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rrr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rrr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rrr.Rmd’

SUMMARY: processing the following file failed:
  ‘rrr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘RRRR.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RRRR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RRRR.Rmd’

SUMMARY: processing the following file failed:
  ‘RRRR.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rescaling_data.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rescaling_data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rescaling_data.Rmd’

SUMMARY: processing the following file failed:
  ‘rescaling_data.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Update.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Update.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Update.Rmd’

--- re-building ‘rrtable.Rmd’ using rmarkdown
Loading required package: moonBook
Loading required package: ztable
Welcome to package ztable ver 0.2.0
Loading required package: rrtable
Welcome to rrtable package
Register inputHandler for chooserInput

Attaching package: 'rrtable'

The following objects are masked from 'package:ztable':

    roundDf, ztable2flextable

Loading required package: ggplot2
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rrtable.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rrtable.Rmd’

SUMMARY: processing the following files failed:
  ‘Update.Rmd’ ‘rrtable.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Basics.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Basics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Basics.Rmd’

--- re-building ‘Working_with_rsets.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Working_with_rsets.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Working_with_rsets.Rmd’

SUMMARY: processing the following files failed:
  ‘Basics.Rmd’ ‘Working_with_rsets.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 21.4Mb
  sub-directories of 1Mb or more:
    dependencies  20.2Mb
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RSclient.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
--- re-building ‘api_key.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'api_key.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘api_key.Rmd’

--- re-building ‘multi_author.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'multi_author.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘multi_author.Rmd’

SUMMARY: processing the following files failed:
  ‘api_key.Rmd’ ‘multi_author.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rSEA_vignette.Rmd’ using rmarkdown
Loading required package: hommel
Loading required package: ggplot2
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rSEA_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rSEA_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rSEA_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘RSclient’
Note: information on .o files is not available
File ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/Rserve.Rcheck/Rserve/libs/Rserve.so’:
  Found ‘_exit’, possibly from ‘exit’ (C)
  Found ‘_rand’, possibly from ‘rand’ (C)
  Found ‘_random’, possibly from ‘random’ (C)
  Found ‘_srandom’, possibly from ‘srandom’ (C)
File ‘Rserve/libs/Rserve.so’:
  Found non-API call to R: ‘R_TempDir’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 25.4Mb
  sub-directories of 1Mb or more:
    libs  23.6Mb
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    libs   6.1Mb
installed size is 16.0Mb
  sub-directories of 1Mb or more:
    libs  15.6Mb
Errors in running code in vignettes:
when running code in ‘intro.Rnw’
  ...
5  -19 394.1379
6   16 287.6000

> with(defer(sr), S4Vectors::DataFrame(gain = arr_delay - 
+     dep_delay, speed = distance/air_time * 60))
DataFrame with 336776 rows and 2 columns

  When sourcing ‘intro.R’:
Error: '[' only accepts x[i] or x[] syntax
Execution halted

  ‘intro.Rnw’... failed
installed size is 11.6Mb
  sub-directories of 1Mb or more:
    libs  10.8Mb
installed size is 46.3Mb
  sub-directories of 1Mb or more:
    libs  45.7Mb
Error(s) in re-building vignettes:
--- re-building ‘benchmark.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'benchmark.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘benchmark.Rmd’

--- re-building ‘igraph.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'igraph.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘igraph.Rmd’

--- re-building ‘rsppfp.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rsppfp.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rsppfp.Rmd’

SUMMARY: processing the following files failed:
  ‘benchmark.Rmd’ ‘igraph.Rmd’ ‘rsppfp.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 11.6Mb
  sub-directories of 1Mb or more:
    libs  11.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘rsql.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rsql.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rsql.Rmd’

SUMMARY: processing the following file failed:
  ‘rsql.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘GMMAT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘rSQM-workflow.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rSQM-workflow.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rSQM-workflow.Rmd’

SUMMARY: processing the following file failed:
  ‘rSQM-workflow.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 148.5Mb
  sub-directories of 1Mb or more:
    R       1.6Mb
    doc     4.5Mb
    libs  141.8Mb
installed size is 28.4Mb
  sub-directories of 1Mb or more:
    libs  28.0Mb
Error(s) in re-building vignettes:
--- re-building ‘emaxmodel.Rmd’ using rmarkdown
Loading required package: Rcpp

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'emaxmodel.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘emaxmodel.Rmd’

SUMMARY: processing the following file failed:
  ‘emaxmodel.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 228.7Mb
  sub-directories of 1Mb or more:
    libs  226.0Mb
installed size is 73.9Mb
  sub-directories of 1Mb or more:
    libs  72.6Mb
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    libs   3.6Mb
installed size is 16.4Mb
  sub-directories of 1Mb or more:
    doc    1.4Mb
    libs  13.4Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘RSuite-vignette.Rmd’ using rmarkdown
Loading required package: data.table
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RSuite-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RSuite-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘RSuite-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 66.0Mb
  sub-directories of 1Mb or more:
    libs  65.9Mb
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/Rsymphony.Rcheck/00install.out’ for details.
installed size is 11.7Mb
  sub-directories of 1Mb or more:
    Lib  11.6Mb
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/rtiff.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
--- re-building ‘chai_data_cleaning.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'chai_data_cleaning.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘chai_data_cleaning.Rmd’

--- re-building ‘rtimicropem.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rtimicropem.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rtimicropem.Rmd’

SUMMARY: processing the following files failed:
  ‘chai_data_cleaning.Rmd’ ‘rtimicropem.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc        1.1Mb
    libs       2.1Mb
    projects   2.7Mb
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    libs   4.1Mb
installed size is 29.9Mb
  sub-directories of 1Mb or more:
    doc    7.8Mb
    libs  21.2Mb
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    R      3.0Mb
    libs   2.7Mb
installed size is 10.8Mb
  sub-directories of 1Mb or more:
    data   3.8Mb
    libs   6.5Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘ruin-intro.Rmd’ using rmarkdown
Set default RNG to L'Ecuyer-CMRG for a safe parallel simulation.
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ruin-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ruin-intro.Rmd’

SUMMARY: processing the following file failed:
  ‘ruin-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘design-and-format.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'design-and-format.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘design-and-format.Rmd’

--- re-building ‘rule-packs.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rule-packs.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rule-packs.Rmd’

--- re-building ‘validation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'validation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘validation.Rmd’

SUMMARY: processing the following files failed:
  ‘design-and-format.Rmd’ ‘rule-packs.Rmd’ ‘validation.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘architectures.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'architectures.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘architectures.Rmd’

--- re-building ‘troubleshooting.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'troubleshooting.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘troubleshooting.Rmd’

SUMMARY: processing the following files failed:
  ‘architectures.Rmd’ ‘troubleshooting.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 40.7Mb
  sub-directories of 1Mb or more:
    libs  40.0Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘rvertnet.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rvertnet.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rvertnet.Rmd’

SUMMARY: processing the following file failed:
  ‘rvertnet.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘selectorgadget.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'selectorgadget.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘selectorgadget.Rmd’

SUMMARY: processing the following file failed:
  ‘selectorgadget.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘rviewgraph-Ex.R’ failed
The error most likely occurred in:

> ### Name: rViewGraph
> ### Title: This is a function to create and start the Java graph animation
> ###   GUI.
> ### Aliases: rViewGraph rViewGraph.default rViewGraph.Matrix
> ###   rViewGraph.igraph
> ### Keywords: graph
> 
> ### ** Examples
> 
> # 
> # Viewing an Erdos Renyui random graph specified by random edges.
> f = sample(100,size=200,replace=TRUE)
> t = sample(100,size=200,replace=TRUE)
> vft = rViewGraph(cbind(f,t))
Error in .jnew("rviewgraph/RViewGraph", v, f, t, x, y, directed, running) : 
  java.awt.HeadlessException
Calls: rViewGraph ... rViewGraph.default -> rViewGraphCore -> init -> .jnew
Execution halted
installed size is 62.9Mb
  sub-directories of 1Mb or more:
    include   3.9Mb
    libs     58.6Mb
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RVowpalWabbit.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘rwars.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rwars.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rwars.Rmd’

SUMMARY: processing the following file failed:
  ‘rwars.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rwdataplyr-workflow.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rwdataplyr-workflow.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rwdataplyr-workflow.Rmd’

SUMMARY: processing the following file failed:
  ‘rwdataplyr-workflow.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Text_Analysis_using_WhatsApp_data.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Text_Analysis_using_WhatsApp_data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Text_Analysis_using_WhatsApp_data.Rmd’

SUMMARY: processing the following file failed:
  ‘Text_Analysis_using_WhatsApp_data.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  qwiener.c:60:12: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  qwiener.c:69:12: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/RWiener.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
--- re-building ‘RWildbook_demo1_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RWildbook_demo1_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RWildbook_demo1_vignette.Rmd’

--- re-building ‘RWildbook_demo2_vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RWildbook_demo2_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RWildbook_demo2_vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘RWildbook_demo1_vignette.Rmd’ ‘RWildbook_demo2_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Shortest_paths.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Shortest_paths.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Shortest_paths.Rmd’

SUMMARY: processing the following file failed:
  ‘Shortest_paths.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rwty.Rmd’ using rmarkdown
[WARNING] Could not parse YAML metadata at line 12 column 1: Unexpected '
  '
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rwty.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rwty.Rmd’

SUMMARY: processing the following file failed:
  ‘rwty.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rxnat.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'rxnat.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘rxnat.Rmd’

SUMMARY: processing the following file failed:
  ‘rxnat.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'SnakeCharmR', 'installr'
Error(s) in re-building vignettes:
--- re-building ‘RxODE-intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RxODE-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RxODE-intro.Rmd’

--- re-building ‘RxODE-syntax.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'RxODE-syntax.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘RxODE-syntax.Rmd’

SUMMARY: processing the following files failed:
  ‘RxODE-intro.Rmd’ ‘RxODE-syntax.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.6Mb
  sub-directories of 1Mb or more:
    libs   9.2Mb
installed size is  9.8Mb
  sub-directories of 1Mb or more:
    libs    8.1Mb
    yacas   1.3Mb
installed size is 10.7Mb
  sub-directories of 1Mb or more:
    libs    8.8Mb
    yacas   1.3Mb
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction.Rmd’

--- re-building ‘sentiment.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sentiment.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sentiment.Rmd’

SUMMARY: processing the following files failed:
  ‘introduction.Rmd’ ‘sentiment.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 16.4Mb
  sub-directories of 1Mb or more:
    libs  16.3Mb
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    libs   8.9Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘zooroh-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'zooroh-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘zooroh-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘zooroh-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  8.9Mb
  sub-directories of 1Mb or more:
    libs   8.1Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘sabre.Rmd’ using rmarkdown
Linking to GEOS 3.7.2, GDAL 2.4.2, PROJ 5.2.0
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sabre.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sabre.Rmd’

SUMMARY: processing the following file failed:
  ‘sabre.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘fixedPoint.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'fixedPoint.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘fixedPoint.Rmd’

SUMMARY: processing the following file failed:
  ‘fixedPoint.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  dists.cc:4239:21: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SafeBayes.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
--- re-building ‘customWorkflows.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'customWorkflows.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘customWorkflows.Rmd’

--- re-building ‘shinyUserGuide.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'shinyUserGuide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘shinyUserGuide.Rmd’

SUMMARY: processing the following files failed:
  ‘customWorkflows.Rmd’ ‘shinyUserGuide.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘UsingSAMBA.Rmd’ using rmarkdown
Using average prevalence to calculate marginal c
Using average prevalence to calculate marginal c
Using average prevalence to calculate marginal c
Using average prevalence to calculate marginal c
Using average prevalence to calculate marginal c
Using average prevalence to calculate marginal c
Using average prevalence to calculate marginal c
Using average prevalence to calculate marginal c
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'UsingSAMBA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘UsingSAMBA.Rmd’

SUMMARY: processing the following file failed:
  ‘UsingSAMBA.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 12.0Mb
  sub-directories of 1Mb or more:
    doc    2.4Mb
    libs   8.9Mb
Error(s) in re-building vignettes:
--- re-building ‘Power-and-sample-size.Rmd’ using rmarkdown
Loading required package: TeachingSampling
Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: magrittr
Loading required package: timeDate
With the parameters of this function: N = 1000 n =  873 P1 = 0.5 P2 = 0.5 D = 0.03 DEFF =  2 conf = 0.95 . 
The estimated power of the test is  80.02283 . 
 
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Power-and-sample-size.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Power-and-sample-size.Rmd’

SUMMARY: processing the following file failed:
  ‘Power-and-sample-size.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.8Mb
  sub-directories of 1Mb or more:
    doc    2.3Mb
    help   3.4Mb
    libs   3.6Mb
Packages suggested but not available for checking: 'mixer', 'org.Sc.sgd.db'
Error(s) in re-building vignettes:
  ...
--- re-building ‘sankeywheel.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sankeywheel.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sankeywheel.Rmd’

SUMMARY: processing the following file failed:
  ‘sankeywheel.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘saotd.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Selecting by n
Selecting by n
Selecting by n
Selecting by n
Selecting by n
Selecting by n
Joining, by = "word"
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'saotd.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘saotd.Rmd’

SUMMARY: processing the following file failed:
  ‘saotd.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘howto.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'howto.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘howto.Rmd’

SUMMARY: processing the following file failed:
  ‘howto.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘sars-r-package.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sars-r-package.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sars-r-package.Rmd’

SUMMARY: processing the following file failed:
  ‘sars-r-package.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘saver-tutorial.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'saver-tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘saver-tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘saver-tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/sbrl.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘scatterpie.Rmd’ using rmarkdown
Loading required package: ggplot2
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'scatterpie.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘scatterpie.Rmd’

SUMMARY: processing the following file failed:
  ‘scatterpie.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘scbursts.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'scbursts.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘scbursts.Rmd’

SUMMARY: processing the following file failed:
  ‘scbursts.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘scholar.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'scholar.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘scholar.Rmd’

SUMMARY: processing the following file failed:
  ‘scholar.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘theoffice.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'theoffice.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘theoffice.Rmd’

SUMMARY: processing the following file failed:
  ‘theoffice.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘scidb.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'scidb.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘scidb.Rmd’

SUMMARY: processing the following file failed:
  ‘scidb.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘sclr-math.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sclr-math.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sclr-math.Rmd’

--- re-building ‘sclr-usage.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sclr-usage.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sclr-usage.Rmd’

SUMMARY: processing the following files failed:
  ‘sclr-math.Rmd’ ‘sclr-usage.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Data_loading_and_manipulation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Data_loading_and_manipulation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Data_loading_and_manipulation.Rmd’

--- re-building ‘Statistical_assessment_of_the_differences.Rmd’ using rmarkdown
Warning: Removed 5 rows containing missing values (geom_text).
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Statistical_assessment_of_the_differences.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Statistical_assessment_of_the_differences.Rmd’

SUMMARY: processing the following files failed:
  ‘Data_loading_and_manipulation.Rmd’
  ‘Statistical_assessment_of_the_differences.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘scMappR_Vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'scMappR_Vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘scMappR_Vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘scMappR_Vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Scoper-Vignette.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: stringi
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Scoper-Vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Scoper-Vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘Scoper-Vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    libs   3.5Mb
Error(s) in re-building vignettes:
--- re-building ‘ginhoux.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'ginhoux.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘ginhoux.Rmd’

--- re-building ‘simulated-data.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'simulated-data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘simulated-data.Rmd’

--- re-building ‘seurat.html.asis’ using asis
--- finished re-building ‘seurat.html.asis’

SUMMARY: processing the following files failed:
  ‘ginhoux.Rmd’ ‘simulated-data.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘oligoClasses’
Packages required but not available: 'ALL', 'ConsensusClusterPlus'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building ‘changing-your-python-version.Rmd’ using rmarkdown
sh: where: command not found
Python 2.7.16
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'changing-your-python-version.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘changing-your-python-version.Rmd’

--- re-building ‘example-workflow.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'example-workflow.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘example-workflow.Rmd’

SUMMARY: processing the following files failed:
  ‘changing-your-python-version.Rmd’ ‘example-workflow.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘scrubr.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'scrubr.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘scrubr.Rmd’

SUMMARY: processing the following file failed:
  ‘scrubr.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘case-study.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'case-study.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘case-study.Rmd’

--- re-building ‘replicating-basque.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'replicating-basque.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘replicating-basque.Rmd’

SUMMARY: processing the following files failed:
  ‘case-study.Rmd’ ‘replicating-basque.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘SDALGCP-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'SDALGCP-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘SDALGCP-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘SDALGCP-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction-to-sdar.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'introduction-to-sdar.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘introduction-to-sdar.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction-to-sdar.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘usage.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'usage.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘usage.Rmd’

SUMMARY: processing the following file failed:
  ‘usage.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘sdcMicro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sdcMicro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sdcMicro.Rmd’

--- re-building ‘sdc_guidelines.rnw’ using knitr
--- finished re-building ‘sdc_guidelines.rnw’

SUMMARY: processing the following file failed:
  ‘sdcMicro.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    libs   3.9Mb
Error(s) in re-building vignettes:
  ...
--- re-building ‘sdcTable.rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'sdcTable.rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sdcTable.rmd’

SUMMARY: processing the following file failed:
  ‘sdcTable.rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘quickstart.Rmd’ using rmarkdown
Loading required package: raster
Loading required package: sp
Loading required package: rgdal
rgdal: version: 1.4-8, (SVN revision 845)
 Geospatial Data Abstraction Library extensions to R successfully loaded
 Loaded GDAL runtime: GDAL 2.4.2, released 2019/06/28
 Path to GDAL shared files: /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.0/rgdal/gdal
 GDAL binary built with GEOS: FALSE 
 Loaded PROJ.4 runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520]
 Path to PROJ.4 shared files: /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.0/rgdal/proj
 Linking to sp version: 1.4-1 
trying URL 'http://www.lifewatch.be/sdmpredictors/BO_ph_lonlat.tif'
Content type 'image/tiff' length 2518560 bytes (2.4 MB)
==================================================
downloaded 2.4 MB

trying URL 'http://www.lifewatch.be/sdmpredictors/BO_salinity_lonlat.tif'
Content type 'image/tiff' length 5841760 bytes (5.6 MB)
==================================================
downloaded 5.6 MB

trying URL 'http://www.lifewatch.be/sdmpredictors/BO_ph.tif'
Content type 'image/tiff' length 3201193 bytes (3.1 MB)
==================================================
downloaded 3.1 MB

dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'quickstart.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘quickstart.Rmd’

SUMMARY: processing the following file failed:
  ‘quickstart.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘SDMtune.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'SDMtune.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘SDMtune.Rmd’

SUMMARY: processing the following file failed:
  ‘SDMtune.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘BASPoints.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'BASPoints.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘BASPoints.Rmd’

--- re-building ‘HIPPoints.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'HIPPoints.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘HIPPoints.Rmd’

--- re-building ‘HIPPolygons.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'HIPPolygons.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘HIPPolygons.Rmd’

SUMMARY: processing the following files failed:
  ‘BASPoints.Rmd’ ‘HIPPoints.Rmd’ ‘HIPPolygons.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘reduce.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'reduce.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘reduce.Rmd’

--- re-building ‘stability.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'stability.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘stability.Rmd’

SUMMARY: processing the following files failed:
  ‘reduce.Rmd’ ‘stability.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘searchConsoleR-intro.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'searchConsoleR-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘searchConsoleR-intro.Rmd’

SUMMARY: processing the following file failed:
  ‘searchConsoleR-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘season-vignette.Rmd’ using rmarkdown
Warning in (function (fun = NULL, df = NULL, knots = NULL, ...)  :
  default knots placement along lags has changed since version 2.0.0.
See 'file.show(system.file('Changesince200',package='dlnm'))'.
See also help(logknots) for setting the knots
consistently with the previous versions
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'season-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘season-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘season-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘seastests-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'seastests-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘seastests-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘seastests-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘secrets.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'secrets.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘secrets.Rmd’

SUMMARY: processing the following file failed:
  ‘secrets.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 17.2Mb
  sub-directories of 1Mb or more:
    R      1.4Mb
    libs  14.1Mb
Error(s) in re-building vignettes:
--- re-building ‘secr-datainput.Rmd’ using rmarkdown
This is secr 4.2.0. For overview type ?secr
No errors found :-)
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'secr-datainput.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘secr-datainput.Rmd’

--- re-building ‘secr-overview.Rmd’ using rmarkdown
This is secr 4.2.0. For overview type ?secr
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'secr-overview.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘secr-overview.Rmd’

SUMMARY: processing the following files failed:
  ‘secr-datainput.Rmd’ ‘secr-overview.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Using_secsse.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Using_secsse.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Using_secsse.Rmd’

SUMMARY: processing the following file failed:
  ‘Using_secsse.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘seeds.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'seeds.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘seeds.Rmd’

SUMMARY: processing the following file failed:
  ‘seeds.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘segclust.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'segclust.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘segclust.Rmd’

SUMMARY: processing the following file failed:
  ‘segclust.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  BinNegative.cpp:108:5: warning: assigning field to itself [-Wself-assign-field]
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/Segmentor3IsBack.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘segRDA.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'segRDA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘segRDA.Rmd’

SUMMARY: processing the following file failed:
  ‘segRDA.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘selectSpecies.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'selectSpecies.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘selectSpecies.Rmd’

SUMMARY: processing the following file failed:
  ‘selectSpecies.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘basicOperation.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'basicOperation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘basicOperation.Rmd’

SUMMARY: processing the following file failed:
  ‘basicOperation.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Estimating.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Estimating.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Estimating.Rmd’

--- re-building ‘Preprocessing.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Preprocessing.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Preprocessing.Rmd’

SUMMARY: processing the following files failed:
  ‘Estimating.Rmd’ ‘Preprocessing.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Analyzing.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'Analyzing.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘Analyzing.Rmd’

SUMMARY: processing the following file failed:
  ‘Analyzing.Rmd’

Error: Vignette re-building failed.
Execution halted