Error(s) in re-building vignettes:
--- re-building 'msde-exmodels.Rmd' using rmarkdown
--- finished re-building 'msde-exmodels.Rmd'

--- re-building 'msde-quicktut.Rmd' using rmarkdown
In file included from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeUtils.h:7,
                 from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeRUtils.h:12,
                 from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeInterface.h:166,
                 from msde-22382aefd59_Exports.cpp:10:
D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/mvnUtils.h: In member function 'Numeric sdeRobj<sMod, sPi>::Prior(Numeric, Numeric, bool, bool, int, List) [with sMod = sdeModel; sPi = sdePrior]':
D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/mvnUtils.h:81:66: warning: 'prior.sdePrior::tmpZ' may be used uninitialized in this function [-Wmaybe-uninitialized]
     for(jj = 0; jj < ii; jj++) tmpSum += cholSd[colI + jj] * z[jj];
                                                              ~~~~^
In file included from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeInterface.h:166,
                 from msde-22382aefd59_Exports.cpp:10:
D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeRUtils.h:152:7: note: 'prior.sdePrior::tmpZ' was declared here
   sPi prior(priorArgs.phi, priorArgs.nArgs, priorArgs.nEachArg);
       ^~~~~
In file included from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeUtils.h:7,
                 from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeRUtils.h:12,
                 from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeInterface.h:166,
                 from msde-22382aefd59_Exports.cpp:10:
D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/mvnUtils.h:79:16: warning: 'prior.sdePrior::tmpX' may be used uninitialized in this function [-Wmaybe-uninitialized]
     resi = x[ii] - mean[ii];
            ~~~~^
In file included from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeInterface.h:166,
                 from msde-22382aefd59_Exports.cpp:10:
D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeRUtils.h:152:7: note: 'prior.sdePrior::tmpX' was declared here
   sPi prior(priorArgs.phi, priorArgs.nArgs, priorArgs.nEachArg);
       ^~~~~
D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeRUtils.h:152:7: warning: 'prior.sdePrior::cholSd' may be used uninitialized in this function [-Wmaybe-uninitialized]
In file included from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeUtils.h:7,
                 from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeRUtils.h:12,
                 from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeInterface.h:166,
                 from msde-22382aefd59_Exports.cpp:10:
D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/mvnUtils.h:79:27: warning: 'prior.sdePrior::mean' may be used uninitialized in this function [-Wmaybe-uninitialized]
     resi = x[ii] - mean[ii];
                    ~~~~~~~^
In file included from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeInterface.h:166,
                 from msde-22382aefd59_Exports.cpp:10:
D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeRUtils.h:152:7: note: 'prior.sdePrior::mean' was declared here
   sPi prior(priorArgs.phi, priorArgs.nArgs, priorArgs.nEachArg);
       ^~~~~
In file included from msde-22382aefd59_Exports.cpp:12:
D:/temp/RtmpMDZWGa/sdePrior.h:81:36: warning: 'prior.sdePrior::dataId' may be used uninitialized in this function [-Wmaybe-uninitialized]
     tmpX[nParamRV+ii] = x[dataId[ii]];
                           ~~~~~~~~~^
In file included from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeInterface.h:166,
                 from msde-22382aefd59_Exports.cpp:10:
D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeRUtils.h:152:7: note: 'prior.sdePrior::dataId' was declared here
   sPi prior(priorArgs.phi, priorArgs.nArgs, priorArgs.nEachArg);
       ^~~~~
In file included from msde-22382aefd59_Exports.cpp:12:
D:/temp/RtmpMDZWGa/sdePrior.h:78:32: warning: 'prior.sdePrior::paramId' may be used uninitialized in this function [-Wmaybe-uninitialized]
     tmpX[ii] = theta[paramId[ii]];
                      ~~~~~~~~~~^
In file included from D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeInterface.h:166,
                 from msde-22382aefd59_Exports.cpp:10:
D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeRUtils.h:152:7: note: 'prior.sdePrior::paramId' was declared here
   sPi prior(priorArgs.phi, priorArgs.nArgs, priorArgs.nEachArg);
       ^~~~~
D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeRUtils.h:152:7: warning: 'prior.sdePrior::nDataRV' may be used uninitialized in this function [-Wmaybe-uninitialized]
D:/temp/RtmpOo9ZTJ/RLIBS_149187ff23cb0/msde/include/sdeRUtils.h:152:7: warning: 'prior.sdePrior::nParamRV' may be used uninitialized in this function [-Wmaybe-uninitialized]
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: msde-22382aefd59_Exports.o:msde-22382aefd59_Exports.cpp:(.text+0x179): undefined reference to `omp_get_num_threads'
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: msde-22382aefd59_Exports.o:msde-22382aefd59_Exports.cpp:(.text+0x180): undefined reference to `omp_get_thread_num'
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: msde-22382aefd59_Exports.o:msde-22382aefd59_Exports.cpp:(.text+0x6e0): undefined reference to `omp_get_num_threads'
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: msde-22382aefd59_Exports.o:msde-22382aefd59_Exports.cpp:(.text+0x6e7): undefined reference to `omp_get_thread_num'
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: msde-22382aefd59_Exports.o:msde-22382aefd59_Exports.cpp:(.text$_ZN7sdeRobjI8sdeModel8sdePriorE6LogLikEN4Rcpp6VectorILi14ENS3_15PreserveStorageEEES6_S6_iibbi[_ZN7sdeRobjI8sdeModel8sdePriorE6LogLikEN4Rcpp6VectorILi14ENS3_15PreserveStorageEEES6_S6_iibbi]+0x36d): undefined reference to `GOMP_parallel'
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: msde-22382aefd59_Exports.o:msde-22382aefd59_Exports.cpp:(.text$_ZN7sdeMCMCI8sdeModel8sdePriorE15missGibbsUpdateEPdPiS4_[_ZN7sdeMCMCI8sdeModel8sdePriorE15missGibbsUpdateEPdPiS4_]+0x16b): undefined reference to `GOMP_parallel'
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: msde-22382aefd59_Exports.o:msde-22382aefd59_Exports.cpp:(.text$_ZN7sdeMCMCI8sdeModel8sdePriorE15missGibbsUpdateEPdPiS4_[_ZN7sdeMCMCI8sdeModel8sdePriorE15missGibbsUpdateEPdPiS4_]+0x19d): undefined reference to `GOMP_parallel'
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: msde-22382aefd59_Exports.o:msde-22382aefd59_Exports.cpp:(.text$_ZN7sdeRobjI8sdeModel8sdePriorE4PostEN4Rcpp6VectorILi14ENS3_15PreserveStorageEEES6_S6_NS4_ILi13ES5_EENS4_ILi10ES5_EEiiiiS7_S7_S7_ddNS4_ILi19ES5_EES9_iiiiib[_ZN7sdeRobjI8sdeModel8sdePriorE4PostEN4Rcpp6VectorILi14ENS3_15PreserveStorageEEES6_S6_NS4_ILi13ES5_EENS4_ILi10ES5_EEiiiiS7_S7_S7_ddNS4_ILi19ES5_EES9_iiiiib]+0x1fdf): undefined reference to `omp_get_thread_num'
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: msde-22382aefd59_Exports.o:msde-22382aefd59_Exports.cpp:(.text$_ZN7sdeRobjI8sdeModel8sdePriorE4PostEN4Rcpp6VectorILi14ENS3_15PreserveStorageEEES6_S6_NS4_ILi13ES5_EENS4_ILi10ES5_EEiiiiS7_S7_S7_ddNS4_ILi19ES5_EES9_iiiiib[_ZN7sdeRobjI8sdeModel8sdePriorE4PostEN4Rcpp6VectorILi14ENS3_15PreserveStorageEEES6_S6_NS4_ILi13ES5_EENS4_ILi10ES5_EEiiiiS7_S7_S7_ddNS4_ILi19ES5_EES9_iiiiib]+0x212b): undefined reference to `GOMP_parallel'
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: msde-22382aefd59_Exports.o:msde-22382aefd59_Exports.cpp:(.text$_ZN7sdeRobjI8sdeModel8sdePriorE4PostEN4Rcpp6VectorILi14ENS3_15PreserveStorageEEES6_S6_NS4_ILi13ES5_EENS4_ILi10ES5_EEiiiiS7_S7_S7_ddNS4_ILi19ES5_EES9_iiiiib[_ZN7sdeRobjI8sdeModel8sdePriorE4PostEN4Rcpp6VectorILi14ENS3_15PreserveStorageEEES6_S6_NS4_ILi13ES5_EENS4_ILi10ES5_EEiiiiS7_S7_S7_ddNS4_ILi19ES5_EES9_iiiiib]+0x21de): undefined reference to `GOMP_parallel'
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: msde-22382aefd59_Exports.o:msde-22382aefd59_Exports.cpp:(.text$_ZN7sdeRobjI8sdeModel8sdePriorE4PostEN4Rcpp6VectorILi14ENS3_15PreserveStorageEEES6_S6_NS4_ILi13ES5_EENS4_ILi10ES5_EEiiiiS7_S7_S7_ddNS4_ILi19ES5_EES9_iiiiib[_ZN7sdeRobjI8sdeModel8sdePriorE4PostEN4Rcpp6VectorILi14ENS3_15PreserveStorageEEES6_S6_NS4_ILi13ES5_EENS4_ILi10ES5_EEiiiiS7_S7_S7_ddNS4_ILi19ES5_EES9_iiiiib]+0x22e8): undefined reference to `GOMP_parallel'
collect2.exe: error: ld returned 1 exit status
Quitting from lines 223-231 (msde-quicktut.Rmd) 
Error: processing vignette 'msde-quicktut.Rmd' failed with diagnostics:
Error occurred building shared library.
--- failed re-building 'msde-quicktut.Rmd'

SUMMARY: processing the following file failed:
  'msde-quicktut.Rmd'

Error: Vignette re-building failed.
Execution halted