Error(s) in re-building vignettes:
  ...
--- re-building 'continuous.Rmd' using rmarkdown
Loading required package: sp
Loading required package: viridisLite

Attaching package: 'data.table'

The following object is masked from 'package:raster':

    shift


Attaching package: 'dplyr'

The following objects are masked from 'package:data.table':

    between, first, last

The following objects are masked from 'package:raster':

    intersect, select, union

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

--- finished re-building 'continuous.Rmd'

--- re-building 'discrete.Rmd' using rmarkdown
Loading required package: viridisLite

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Warning: Removed 3 rows containing missing values (geom_text).

Attaching package: 'dplyr'

The following objects are masked from 'package:igraph':

    as_data_frame, groups, union

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

--- finished re-building 'discrete.Rmd'

--- re-building 'none.Rmd' using rmarkdown
--- finished re-building 'none.Rmd'

--- re-building 'nosoi.Rmd' using rmarkdown
Loading required package: viridisLite

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

--- finished re-building 'nosoi.Rmd'

--- re-building 'output.Rmd' using rmarkdown
Loading required package: data.table
Starting the simulation
Initializing ... running ...
Time: 10 (10% of maximum length). Hosts count: 13 (6% of maximum infected hosts).
Time: 20 (20% of maximum length). Hosts count: 88 (44% of maximum infected hosts).
Time: 30 (30% of maximum length). Hosts count: 120 (60% of maximum infected hosts).
Time: 40 (40% of maximum length). Hosts count: 171 (86% of maximum infected hosts).
done. 
The simulation has run for 46 units of time and a total of 204 hosts have been infected.
`stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
Quitting from lines 392-408 (output.Rmd) 
Error: processing vignette 'output.Rmd' failed with diagnostics:
Assigned data `c(...)` must be compatible with existing data.
i Error occurred for column `branch.length`.
x Lossy cast from `value` <integer> to `x` <logical>.
* Locations: 1.
--- failed re-building 'output.Rmd'

SUMMARY: processing the following file failed:
  'output.Rmd'

Error: Vignette re-building failed.
Execution halted